
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.36.3689/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/303582/LUSC-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC-TP/2330213/1.GDAC_clinicalDataPicker.Finished/LUSC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=327, in cluster file=178, common to both=178
[1] 188 178
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           140             38 
  TP53 MUTATED TP53 WILD-TYPE 
           140             38 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              152 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              152 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              151 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              151 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            24            154 
  TPTE MUTATED TPTE WILD-TYPE 
            24            154 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              27              151 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              27              151 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             21             157 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             21             157 
[1] "SI MUTATION ANALYSIS"
[1] 3
  SI MUTATED SI WILD-TYPE 
          36          142 
  SI MUTATED SI WILD-TYPE 
          36          142 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            164 
  PTEN MUTATED PTEN WILD-TYPE 
            14            164 
[1] "OR5L2 MUTATION ANALYSIS"
[1] 3
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             165 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             165 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             27             151 
  FAM5C MUTATED FAM5C WILD-TYPE 
             27             151 
[1] "TRIM58 MUTATION ANALYSIS"
[1] 3
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              15              163 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              15              163 
[1] "REG1B MUTATION ANALYSIS"
[1] 3
  REG1B MUTATED REG1B WILD-TYPE 
             11             167 
  REG1B MUTATED REG1B WILD-TYPE 
             11             167 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             18             160 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             18             160 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             14             164 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             14             164 
[1] "DPPA4 MUTATION ANALYSIS"
[1] 3
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             12             166 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             12             166 
[1] "LRRC4C MUTATION ANALYSIS"
[1] 3
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              17              161 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              17              161 
[1] "ZBBX MUTATION ANALYSIS"
[1] 3
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            161 
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            161 
[1] "CRB1 MUTATION ANALYSIS"
[1] 3
  CRB1 MUTATED CRB1 WILD-TYPE 
            23            155 
  CRB1 MUTATED CRB1 WILD-TYPE 
            23            155 
[1] "CYP11B1 MUTATION ANALYSIS"
[1] 3
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               163 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               163 
[1] "USP29 MUTATION ANALYSIS"
[1] 3
  USP29 MUTATED USP29 WILD-TYPE 
             17             161 
  USP29 MUTATED USP29 WILD-TYPE 
             17             161 
[1] "OR6F1 MUTATION ANALYSIS"
[1] 3
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             13             165 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             13             165 
[1] "MAGEB2 MUTATION ANALYSIS"
[1] 3
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               9              169 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               9              169 
[1] "OR2G6 MUTATION ANALYSIS"
[1] 3
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             15             163 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             15             163 
[1] "CFHR4 MUTATION ANALYSIS"
[1] 3
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             168 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             168 
[1] "ESRRG MUTATION ANALYSIS"
[1] 3
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             166 
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             166 
[1] "OR51B2 MUTATION ANALYSIS"
[1] 3
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              168 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              168 
[1] "REG3G MUTATION ANALYSIS"
[1] 3
  REG3G MUTATED REG3G WILD-TYPE 
              8             170 
  REG3G MUTATED REG3G WILD-TYPE 
              8             170 
[1] "OR2T33 MUTATION ANALYSIS"
[1] 3
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              13              165 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              13              165 
[1] "PNLIPRP3 MUTATION ANALYSIS"
[1] 3
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                11                167 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                11                167 
[1] "SPHKAP MUTATION ANALYSIS"
[1] 3
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              25              153 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              25              153 
[1] "SLC13A1 MUTATION ANALYSIS"
[1] 3
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               166 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               166 
[1] "CPS1 MUTATION ANALYSIS"
[1] 3
  CPS1 MUTATED CPS1 WILD-TYPE 
            24            154 
  CPS1 MUTATED CPS1 WILD-TYPE 
            24            154 
[1] "ASB5 MUTATION ANALYSIS"
[1] 3
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            169 
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            169 
[1] "TGIF2LX MUTATION ANALYSIS"
[1] 3
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                8               170 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                8               170 
[1] "C20ORF26 MUTATION ANALYSIS"
[1] 3
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                19                159 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                19                159 
[1] "TRAT1 MUTATION ANALYSIS"
[1] 3
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              7             171 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              7             171 
[1] "CLVS2 MUTATION ANALYSIS"
[1] 3
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             169 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             169 
[1] "MTNR1B MUTATION ANALYSIS"
[1] 3
  MTNR1B MUTATED MTNR1B WILD-TYPE 
              10              168 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
              10              168 
[1] "OR10G8 MUTATION ANALYSIS"
[1] 3
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              168 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              168 
[1] "MS4A14 MUTATION ANALYSIS"
[1] 3
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              13              165 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              13              165 
[1] "REG3A MUTATION ANALYSIS"
[1] 3
  REG3A MUTATED REG3A WILD-TYPE 
             10             168 
  REG3A MUTATED REG3A WILD-TYPE 
             10             168 
[1] "SPANXN1 MUTATION ANALYSIS"
[1] 3
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               173 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               173 
[1] "KCNJ3 MUTATION ANALYSIS"
[1] 3
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             167 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             167 
[1] "OR4M1 MUTATION ANALYSIS"
[1] 3
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             165 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             165 
[1] "TECRL MUTATION ANALYSIS"
[1] 3
  TECRL MUTATED TECRL WILD-TYPE 
              9             169 
  TECRL MUTATED TECRL WILD-TYPE 
              9             169 
[1] "OR6K3 MUTATION ANALYSIS"
[1] 3
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             170 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             170 
[1] "ASCL4 MUTATION ANALYSIS"
[1] 3
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              6             172 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              6             172 
[1] "OR2A5 MUTATION ANALYSIS"
[1] 3
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             170 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             170 
[1] "REG1A MUTATION ANALYSIS"
[1] 3
  REG1A MUTATED REG1A WILD-TYPE 
             11             167 
  REG1A MUTATED REG1A WILD-TYPE 
             11             167 
[1] "PDYN MUTATION ANALYSIS"
[1] 3
  PDYN MUTATED PDYN WILD-TYPE 
             8            170 
  PDYN MUTATED PDYN WILD-TYPE 
             8            170 
[1] "POTEG MUTATION ANALYSIS"
[1] 3
  POTEG MUTATED POTEG WILD-TYPE 
             10             168 
  POTEG MUTATED POTEG WILD-TYPE 
             10             168 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           12           166 
  RB1 MUTATED RB1 WILD-TYPE 
           12           166 
[1] "CLSTN2 MUTATION ANALYSIS"
[1] 3
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              16              162 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              16              162 
[1] "PARK2 MUTATION ANALYSIS"
[1] 3
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             168 
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             168 
[1] "PYHIN1 MUTATION ANALYSIS"
[1] 3
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              167 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              167 
[1] "FAM5B MUTATION ANALYSIS"
[1] 3
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             164 
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             164 
[1] "SLC17A8 MUTATION ANALYSIS"
[1] 3
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               12               166 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               12               166 
[1] "ZFP42 MUTATION ANALYSIS"
[1] 3
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              8             170 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              8             170 
[1] "TRHDE MUTATION ANALYSIS"
[1] 3
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             164 
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             164 
[1] "OR2T8 MUTATION ANALYSIS"
[1] 3
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             170 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             170 
[1] "UGT3A2 MUTATION ANALYSIS"
[1] 3
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
              10              168 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
              10              168 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             9            169 
  GBA3 MUTATED GBA3 WILD-TYPE 
             9            169 
[1] "OR5M9 MUTATION ANALYSIS"
[1] 3
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              8             170 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              8             170 
[1] "OR2AK2 MUTATION ANALYSIS"
[1] 3
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              170 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              170 
[1] "ZIC1 MUTATION ANALYSIS"
[1] 3
  ZIC1 MUTATED ZIC1 WILD-TYPE 
            16            162 
  ZIC1 MUTATED ZIC1 WILD-TYPE 
            16            162 
[1] "PSG6 MUTATION ANALYSIS"
[1] 3
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            169 
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            169 
[1] "GABRA2 MUTATION ANALYSIS"
[1] 3
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              12              166 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              12              166 
[1] "RTN1 MUTATION ANALYSIS"
[1] 3
  RTN1 MUTATED RTN1 WILD-TYPE 
            12            166 
  RTN1 MUTATED RTN1 WILD-TYPE 
            12            166 
[1] "ZNF80 MUTATION ANALYSIS"
[1] 3
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             171 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             171 
[1] "GPC5 MUTATION ANALYSIS"
[1] 3
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            167 
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            167 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
             8            170 
  CD5L MUTATED CD5L WILD-TYPE 
             8            170 
[1] "OR52J3 MUTATION ANALYSIS"
[1] 3
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               7              171 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               7              171 
[1] "RPL10L MUTATION ANALYSIS"
[1] 3
  RPL10L MUTATED RPL10L WILD-TYPE 
               7              171 
  RPL10L MUTATED RPL10L WILD-TYPE 
               7              171 
[1] "FCAR MUTATION ANALYSIS"
[1] 3
  FCAR MUTATED FCAR WILD-TYPE 
             8            170 
  FCAR MUTATED FCAR WILD-TYPE 
             8            170 
[1] "OR2M7 MUTATION ANALYSIS"
[1] 3
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             170 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             170 
[1] "OR10A4 MUTATION ANALYSIS"
[1] 3
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              170 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              170 
[1] "C6ORF97 MUTATION ANALYSIS"
[1] 3
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
               12               166 
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
               12               166 
[1] "OR2T12 MUTATION ANALYSIS"
[1] 3
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              170 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              170 
[1] "APOBEC1 MUTATION ANALYSIS"
[1] 3
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                7               171 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                7               171 
[1] "C8ORF34 MUTATION ANALYSIS"
[1] 3
  C8ORF34 MUTATED C8ORF34 WILD-TYPE 
                9               169 
  C8ORF34 MUTATED C8ORF34 WILD-TYPE 
                9               169 
[1] "PRR23B MUTATION ANALYSIS"
[1] 3
  PRR23B MUTATED PRR23B WILD-TYPE 
               9              169 
  PRR23B MUTATED PRR23B WILD-TYPE 
               9              169 
[1] "OR2L13 MUTATION ANALYSIS"
[1] 3
  OR2L13 MUTATED OR2L13 WILD-TYPE 
              11              167 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
              11              167 
[1] "CALN1 MUTATION ANALYSIS"
[1] 3
  CALN1 MUTATED CALN1 WILD-TYPE 
              8             170 
  CALN1 MUTATED CALN1 WILD-TYPE 
              8             170 
[1] "RIMS2 MUTATION ANALYSIS"
[1] 3
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             22             156 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             22             156 
[1] "RNF144A MUTATION ANALYSIS"
[1] 3
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               171 
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               171 
[1] "OR4N2 MUTATION ANALYSIS"
[1] 3
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              9             169 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              9             169 
[1] "PNLIP MUTATION ANALYSIS"
[1] 3
  PNLIP MUTATED PNLIP WILD-TYPE 
             10             168 
  PNLIP MUTATED PNLIP WILD-TYPE 
             10             168 
[1] "OR4C11 MUTATION ANALYSIS"
[1] 3
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              171 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              171 
[1] "CNTNAP4 MUTATION ANALYSIS"
[1] 3
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               16               162 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               16               162 
[1] "CUL3 MUTATION ANALYSIS"
[1] 3
  CUL3 MUTATED CUL3 WILD-TYPE 
            11            167 
  CUL3 MUTATED CUL3 WILD-TYPE 
            11            167 
[1] "VN1R5 MUTATION ANALYSIS"
[1] 3
  VN1R5 MUTATED VN1R5 WILD-TYPE 
              9             169 
  VN1R5 MUTATED VN1R5 WILD-TYPE 
              9             169 
[1] "OR8H1 MUTATION ANALYSIS"
[1] 3
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              7             171 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              7             171 
[1] "GUCY1A2 MUTATION ANALYSIS"
[1] 3
  GUCY1A2 MUTATED GUCY1A2 WILD-TYPE 
               11               167 
  GUCY1A2 MUTATED GUCY1A2 WILD-TYPE 
               11               167 
[1] "SLC24A4 MUTATION ANALYSIS"
[1] 3
  SLC24A4 MUTATED SLC24A4 WILD-TYPE 
               10               168 
  SLC24A4 MUTATED SLC24A4 WILD-TYPE 
               10               168 
[1] "MNDA MUTATION ANALYSIS"
[1] 3
  MNDA MUTATED MNDA WILD-TYPE 
             8            170 
  MNDA MUTATED MNDA WILD-TYPE 
             8            170 
[1] "OR5AC2 MUTATION ANALYSIS"
[1] 3
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              171 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              171 
[1] "OR8K3 MUTATION ANALYSIS"
[1] 3
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             171 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             171 
[1] "TAS2R60 MUTATION ANALYSIS"
[1] 3
  TAS2R60 MUTATED TAS2R60 WILD-TYPE 
                7               171 
  TAS2R60 MUTATED TAS2R60 WILD-TYPE 
                7               171 
[1] "CCDC85A MUTATION ANALYSIS"
[1] 3
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               169 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               169 
[1] "ZNF98 MUTATION ANALYSIS"
[1] 3
  ZNF98 MUTATED ZNF98 WILD-TYPE 
              8             170 
  ZNF98 MUTATED ZNF98 WILD-TYPE 
              8             170 
[1] "PCDHB10 MUTATION ANALYSIS"
[1] 3
  PCDHB10 MUTATED PCDHB10 WILD-TYPE 
               12               166 
  PCDHB10 MUTATED PCDHB10 WILD-TYPE 
               12               166 
[1] "GABRA6 MUTATION ANALYSIS"
[1] 3
  GABRA6 MUTATED GABRA6 WILD-TYPE 
               8              170 
  GABRA6 MUTATED GABRA6 WILD-TYPE 
               8              170 
[1] "C8ORF22 MUTATION ANALYSIS"
[1] 3
  C8ORF22 MUTATED C8ORF22 WILD-TYPE 
                4               174 
  C8ORF22 MUTATED C8ORF22 WILD-TYPE 
                4               174 
[1] "ACSM2B MUTATION ANALYSIS"
[1] 3
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              13              165 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              13              165 
[1] "HDAC9 MUTATION ANALYSIS"
[1] 3
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             164 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             164 
[1] "OR2T2 MUTATION ANALYSIS"
[1] 3
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              7             171 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              7             171 
[1] "TEX13A MUTATION ANALYSIS"
[1] 3
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              170 
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              170 
[1] "OR14A16 MUTATION ANALYSIS"
[1] 3
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                8               170 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                8               170 
[1] "OR10R2 MUTATION ANALYSIS"
[1] 3
  OR10R2 MUTATED OR10R2 WILD-TYPE 
               7              171 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
               7              171 
[1] "OR5AS1 MUTATION ANALYSIS"
[1] 3
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              171 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              171 
[1] "OR5K1 MUTATION ANALYSIS"
[1] 3
  OR5K1 MUTATED OR5K1 WILD-TYPE 
              7             171 
  OR5K1 MUTATED OR5K1 WILD-TYPE 
              7             171 
[1] "RSRC1 MUTATION ANALYSIS"
[1] 3
  RSRC1 MUTATED RSRC1 WILD-TYPE 
              7             171 
  RSRC1 MUTATED RSRC1 WILD-TYPE 
              7             171 
[1] "C3ORF59 MUTATION ANALYSIS"
[1] 3
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
                9               169 
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
                9               169 
[1] "KCND2 MUTATION ANALYSIS"
[1] 3
  KCND2 MUTATED KCND2 WILD-TYPE 
             12             166 
  KCND2 MUTATED KCND2 WILD-TYPE 
             12             166 
[1] "BMP5 MUTATION ANALYSIS"
[1] 3
  BMP5 MUTATED BMP5 WILD-TYPE 
             8            170 
  BMP5 MUTATED BMP5 WILD-TYPE 
             8            170 
[1] "CDH20 MUTATION ANALYSIS"
[1] 3
  CDH20 MUTATED CDH20 WILD-TYPE 
             11             167 
  CDH20 MUTATED CDH20 WILD-TYPE 
             11             167 
[1] "KRTAP10-7 MUTATION ANALYSIS"
[1] 3
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  7                 171 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  7                 171 
[1] "OR6K2 MUTATION ANALYSIS"
[1] 3
  OR6K2 MUTATED OR6K2 WILD-TYPE 
              7             171 
  OR6K2 MUTATED OR6K2 WILD-TYPE 
              7             171 
[1] "CXORF66 MUTATION ANALYSIS"
[1] 3
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                7               171 
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                7               171 
[1] "GAP43 MUTATION ANALYSIS"
[1] 3
  GAP43 MUTATED GAP43 WILD-TYPE 
              6             172 
  GAP43 MUTATED GAP43 WILD-TYPE 
              6             172 
[1] "KCNN2 MUTATION ANALYSIS"
[1] 3
  KCNN2 MUTATED KCNN2 WILD-TYPE 
             10             168 
  KCNN2 MUTATED KCNN2 WILD-TYPE 
             10             168 
[1] "LEPROT MUTATION ANALYSIS"
[1] 3
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              174 
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              174 
[1] "EPB41L3 MUTATION ANALYSIS"
[1] 3
  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
               18               160 
  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
               18               160 
[1] "PACRGL MUTATION ANALYSIS"
[1] 3
  PACRGL MUTATED PACRGL WILD-TYPE 
               5              173 
  PACRGL MUTATED PACRGL WILD-TYPE 
               5              173 
[1] "MGC26647 MUTATION ANALYSIS"
[1] 3
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 6                172 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 6                172 
[1] "TYR MUTATION ANALYSIS"
[1] 3
  TYR MUTATED TYR WILD-TYPE 
            9           169 
  TYR MUTATED TYR WILD-TYPE 
            9           169 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              172 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              172 
[1] "HAO1 MUTATION ANALYSIS"
[1] 3
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            171 
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            171 
[1] "MAGEA6 MUTATION ANALYSIS"
[1] 3
  MAGEA6 MUTATED MAGEA6 WILD-TYPE 
               8              170 
  MAGEA6 MUTATED MAGEA6 WILD-TYPE 
               8              170 
[1] "ASB17 MUTATION ANALYSIS"
[1] 3
  ASB17 MUTATED ASB17 WILD-TYPE 
              6             172 
  ASB17 MUTATED ASB17 WILD-TYPE 
              6             172 
[1] "KIRREL2 MUTATION ANALYSIS"
[1] 3
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               167 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               167 
[1] "CLEC3A MUTATION ANALYSIS"
[1] 3
  CLEC3A MUTATED CLEC3A WILD-TYPE 
               5              173 
  CLEC3A MUTATED CLEC3A WILD-TYPE 
               5              173 
[1] "SLCO1B1 MUTATION ANALYSIS"
[1] 3
  SLCO1B1 MUTATED SLCO1B1 WILD-TYPE 
               13               165 
  SLCO1B1 MUTATED SLCO1B1 WILD-TYPE 
               13               165 
[1] "OR11L1 MUTATION ANALYSIS"
[1] 3
  OR11L1 MUTATED OR11L1 WILD-TYPE 
              11              167 
  OR11L1 MUTATED OR11L1 WILD-TYPE 
              11              167 
[1] "FAM159A MUTATION ANALYSIS"
[1] 3
  FAM159A MUTATED FAM159A WILD-TYPE 
                5               173 
  FAM159A MUTATED FAM159A WILD-TYPE 
                5               173 
[1] "FTHL17 MUTATION ANALYSIS"
[1] 3
  FTHL17 MUTATED FTHL17 WILD-TYPE 
               5              173 
  FTHL17 MUTATED FTHL17 WILD-TYPE 
               5              173 
[1] "MAGEA4 MUTATION ANALYSIS"
[1] 3
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               7              171 
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               7              171 
[1] "TRIM48 MUTATION ANALYSIS"
[1] 3
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               5              173 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               5              173 
[1] "ZNF254 MUTATION ANALYSIS"
[1] 3
  ZNF254 MUTATED ZNF254 WILD-TYPE 
               9              169 
  ZNF254 MUTATED ZNF254 WILD-TYPE 
               9              169 
[1] "DARC MUTATION ANALYSIS"
[1] 3
  DARC MUTATED DARC WILD-TYPE 
             7            171 
  DARC MUTATED DARC WILD-TYPE 
             7            171 
[1] "SLC18A3 MUTATION ANALYSIS"
[1] 3
  SLC18A3 MUTATED SLC18A3 WILD-TYPE 
                8               170 
  SLC18A3 MUTATED SLC18A3 WILD-TYPE 
                8               170 
[1] "SLC44A5 MUTATION ANALYSIS"
[1] 3
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
               10               168 
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
               10               168 
[1] "OR5T1 MUTATION ANALYSIS"
[1] 3
  OR5T1 MUTATED OR5T1 WILD-TYPE 
             10             168 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
             10             168 
[1] "CLRN2 MUTATION ANALYSIS"
[1] 3
  CLRN2 MUTATED CLRN2 WILD-TYPE 
              6             172 
  CLRN2 MUTATED CLRN2 WILD-TYPE 
              6             172 
[1] "ABCD2 MUTATION ANALYSIS"
[1] 3
  ABCD2 MUTATED ABCD2 WILD-TYPE 
             11             167 
  ABCD2 MUTATED ABCD2 WILD-TYPE 
             11             167 
[1] "ZNF835 MUTATION ANALYSIS"
[1] 3
  ZNF835 MUTATED ZNF835 WILD-TYPE 
               9              169 
  ZNF835 MUTATED ZNF835 WILD-TYPE 
               9              169 
[1] "GP2 MUTATION ANALYSIS"
[1] 3
  GP2 MUTATED GP2 WILD-TYPE 
           11           167 
  GP2 MUTATED GP2 WILD-TYPE 
           11           167 
[1] "LDB2 MUTATION ANALYSIS"
[1] 3
  LDB2 MUTATED LDB2 WILD-TYPE 
             7            171 
  LDB2 MUTATED LDB2 WILD-TYPE 
             7            171 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            171 
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            171 
[1] "SORCS1 MUTATION ANALYSIS"
[1] 3
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              19              159 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              19              159 
[1] "OR10Q1 MUTATION ANALYSIS"
[1] 3
  OR10Q1 MUTATED OR10Q1 WILD-TYPE 
               7              171 
  OR10Q1 MUTATED OR10Q1 WILD-TYPE 
               7              171 
[1] "CBLN4 MUTATION ANALYSIS"
[1] 3
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             173 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             173 
[1] "H1FNT MUTATION ANALYSIS"
[1] 3
  H1FNT MUTATED H1FNT WILD-TYPE 
              4             174 
  H1FNT MUTATED H1FNT WILD-TYPE 
              4             174 
[1] "OR2J3 MUTATION ANALYSIS"
[1] 3
  OR2J3 MUTATED OR2J3 WILD-TYPE 
              6             172 
  OR2J3 MUTATED OR2J3 WILD-TYPE 
              6             172 
[1] "TRPV5 MUTATION ANALYSIS"
[1] 3
  TRPV5 MUTATED TRPV5 WILD-TYPE 
             11             167 
  TRPV5 MUTATED TRPV5 WILD-TYPE 
             11             167 
[1] "DACH2 MUTATION ANALYSIS"
[1] 3
  DACH2 MUTATED DACH2 WILD-TYPE 
              9             169 
  DACH2 MUTATED DACH2 WILD-TYPE 
              9             169 
[1] "MYH8 MUTATION ANALYSIS"
[1] 3
  MYH8 MUTATED MYH8 WILD-TYPE 
            21            157 
  MYH8 MUTATED MYH8 WILD-TYPE 
            21            157 
[1] "NAA38 MUTATION ANALYSIS"
[1] 3
  NAA38 MUTATED NAA38 WILD-TYPE 
              3             175 
  NAA38 MUTATED NAA38 WILD-TYPE 
              3             175 
[1] "PCDH11X MUTATION ANALYSIS"
[1] 3
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               27               151 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               27               151 
[1] "FTMT MUTATION ANALYSIS"
[1] 3
  FTMT MUTATED FTMT WILD-TYPE 
             6            172 
  FTMT MUTATED FTMT WILD-TYPE 
             6            172 
[1] "OR4N4 MUTATION ANALYSIS"
[1] 3
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              8             170 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              8             170 
[1] "NKX2-2 MUTATION ANALYSIS"
[1] 3
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
               6              172 
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
               6              172 
[1] "HIST1H2BF MUTATION ANALYSIS"
[1] 3
  HIST1H2BF MUTATED HIST1H2BF WILD-TYPE 
                  4                 174 
  HIST1H2BF MUTATED HIST1H2BF WILD-TYPE 
                  4                 174 
[1] "CLLU1OS MUTATION ANALYSIS"
[1] 3
  CLLU1OS MUTATED CLLU1OS WILD-TYPE 
                4               174 
  CLLU1OS MUTATED CLLU1OS WILD-TYPE 
                4               174 
[1] "CD1B MUTATION ANALYSIS"
[1] 3
  CD1B MUTATED CD1B WILD-TYPE 
             6            172 
  CD1B MUTATED CD1B WILD-TYPE 
             6            172 
[1] "CNKSR2 MUTATION ANALYSIS"
[1] 3
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
              12              166 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
              12              166 
[1] "APLNR MUTATION ANALYSIS"
[1] 3
  APLNR MUTATED APLNR WILD-TYPE 
              7             171 
  APLNR MUTATED APLNR WILD-TYPE 
              7             171 
[1] "SCHIP1 MUTATION ANALYSIS"
[1] 3
  SCHIP1 MUTATED SCHIP1 WILD-TYPE 
               6              172 
  SCHIP1 MUTATED SCHIP1 WILD-TYPE 
               6              172 
[1] "TUBA3C MUTATION ANALYSIS"
[1] 3
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               7              171 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               7              171 
[1] "TMEM195 MUTATION ANALYSIS"
[1] 3
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                7               171 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                7               171 
[1] "MAGEC2 MUTATION ANALYSIS"
[1] 3
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               7              171 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               7              171 
[1] "MRGPRX1 MUTATION ANALYSIS"
[1] 3
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
                6               172 
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
                6               172 
[1] "OR4S2 MUTATION ANALYSIS"
[1] 3
  OR4S2 MUTATED OR4S2 WILD-TYPE 
             11             167 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
             11             167 
[1] "SPATA8 MUTATION ANALYSIS"
[1] 3
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               4              174 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               4              174 
[1] "PDZRN4 MUTATION ANALYSIS"
[1] 3
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              11              167 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
              11              167 
[1] "OR2M3 MUTATION ANALYSIS"
[1] 3
  OR2M3 MUTATED OR2M3 WILD-TYPE 
              8             170 
  OR2M3 MUTATED OR2M3 WILD-TYPE 
              8             170 
[1] "SFRS1 MUTATION ANALYSIS"
[1] 3
  SFRS1 MUTATED SFRS1 WILD-TYPE 
              5             173 
  SFRS1 MUTATED SFRS1 WILD-TYPE 
              5             173 
[1] "MCHR2 MUTATION ANALYSIS"
[1] 3
  MCHR2 MUTATED MCHR2 WILD-TYPE 
              6             172 
  MCHR2 MUTATED MCHR2 WILD-TYPE 
              6             172 
[1] "PSG2 MUTATION ANALYSIS"
[1] 3
  PSG2 MUTATED PSG2 WILD-TYPE 
             6            172 
  PSG2 MUTATED PSG2 WILD-TYPE 
             6            172 
[1] "ZSCAN4 MUTATION ANALYSIS"
[1] 3
  ZSCAN4 MUTATED ZSCAN4 WILD-TYPE 
               8              170 
  ZSCAN4 MUTATED ZSCAN4 WILD-TYPE 
               8              170 
[1] "COX7B2 MUTATION ANALYSIS"
[1] 3
  COX7B2 MUTATED COX7B2 WILD-TYPE 
               3              175 
  COX7B2 MUTATED COX7B2 WILD-TYPE 
               3              175 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             172 
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             172 
[1] "FRG2B MUTATION ANALYSIS"
[1] 3
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             173 
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             173 
[1] "FAM71B MUTATION ANALYSIS"
[1] 3
  FAM71B MUTATED FAM71B WILD-TYPE 
               8              170 
  FAM71B MUTATED FAM71B WILD-TYPE 
               8              170 
[1] "MMP8 MUTATION ANALYSIS"
[1] 3
  MMP8 MUTATED MMP8 WILD-TYPE 
             8            170 
  MMP8 MUTATED MMP8 WILD-TYPE 
             8            170 
[1] "ZFP36L2 MUTATION ANALYSIS"
[1] 3
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                5               173 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                5               173 
[1] "CLEC4C MUTATION ANALYSIS"
[1] 3
  CLEC4C MUTATED CLEC4C WILD-TYPE 
               5              173 
  CLEC4C MUTATED CLEC4C WILD-TYPE 
               5              173 
[1] "FYB MUTATION ANALYSIS"
[1] 3
  FYB MUTATED FYB WILD-TYPE 
           10           168 
  FYB MUTATED FYB WILD-TYPE 
           10           168 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "STOPPEDSMOKINGYEAR"                    
[19] "TOBACCOSMOKINGHISTORYINDICATOR"        
[20] "YEAROFTOBACCOSMOKINGONSET"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 178 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
        3516         1426         1852         1058          473          283 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
         962          908          656          329          223          131 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
          53          429          822          622         1067          734 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
        1161         1057          399          587          358          964 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
        1974         1932          444         1345           24         2170 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
         357          915         1912         1713          505         2524 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        3469         2979         1311         5286         3149         4299 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
         428           NA           80         1874          999         1528 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
        1575          994           NA          329          235          428 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
         698          168           NA          120           13          238 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
         207           12          103         2253         1360         2086 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
          NA         2130         1848           52          740           59 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
         832          474         1084           24          544          550 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
         352          573          258          213          183           85 
TCGA-43-6771 TCGA-46-3765 TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 
          NA           NA           NA           NA           NA           NA 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
          29           18           12           12           63          880 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
           3           NA           62           31          311          660 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
        2082         1505         1685          888          274         1456 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
        1075          931           96          793          733          693 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 TCGA-63-5131 TCGA-63-6202 
          37          719          358           NA           NA           NA 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
         516         1311          641           30           61           28 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
          30           30          638          761           30           61 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
          31           61           61          700          578           92 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
          61          578          366          121          365          759 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
          59          790         1217          699          123          153 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-70-6722 
         913          306         1645          122         1492           NA 
TCGA-70-6723 TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 
          NA           NA           11           24 
Variable 1:'AGE':	nDistinctValues=37,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=69,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=142,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=128,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'STOPPEDSMOKINGYEAR':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=40,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "STOPPEDSMOKINGYEAR"                    
[12] "TOBACCOSMOKINGHISTORYINDICATOR"        
[13] "YEAROFTOBACCOSMOKINGONSET"             
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
 1  2  3  4 
97 38 38  3 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 178 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=37, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 36 116  14  12 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 36 116  14  12 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 36 116  14  12 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 36 116  14  12 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
117  39  17   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
117  39  17   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
117  39  17   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
117  39  17   5 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 97  38  38   3 
[1] "table(vv)"
vv
     I     II III+IV 
    97     38     41 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 97  38  38   3 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


     I     II III+IV 
    97     38     41 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=56, binary=FALSE, numeric=TRUE
STOPPEDSMOKINGYEAR, nv=39, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=40, binary=FALSE, numeric=TRUE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
D1V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   83 50
  TP53 WILD-TYPE 14 20
  TP53 MUTATED TP53 WILD-TYPE 
           133             34 
  TP53 MUTATED TP53 WILD-TYPE 
            50             20 
$`TP53 MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-5592 TCGA-21-1076 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
        2.79         3.02        60.89        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
       10.82         7.33         1.74        14.10        27.02        35.08 
TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       24.13        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5236 
       19.76         2.63        61.61        32.84        51.78         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       10.82         7.73        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        70.03        60.76         1.71        24.33 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 TCGA-43-3920 
       27.35        15.58        35.64         0.79        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        8.48         7.00         2.79         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 
        1.02        10.22        21.70        68.45        55.40        29.19 
TCGA-60-2713 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
        1.22        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2777 
        2.01         1.02         2.01         2.01        23.01         2.01 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 
       12.00        24.95        25.97        40.01        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

$`TP53 WILD-TYPE`
TCGA-18-3412 TCGA-18-3417 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
       11.34        24.92        90.51        27.16       115.59        46.88 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-22-1002 TCGA-22-4591 TCGA-22-4599 
       34.78        15.55         9.30         4.31        20.45        38.17 
TCGA-22-5472 TCGA-34-5231 TCGA-34-5234 TCGA-34-5241 TCGA-39-5022 TCGA-39-5030 
       64.90        50.24        32.68        14.07        55.17         1.94 
TCGA-39-5039 TCGA-43-2578 TCGA-43-6647 TCGA-43-6771 TCGA-60-2709 TCGA-60-2712 
       17.88        18.08         6.02         5.42        49.48         9.01 
TCGA-60-2715 TCGA-60-2725 TCGA-60-2726 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
       35.34        23.64        11.77        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2789 
       12.03         3.98         1.94         4.04 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           1.94 
  TP53 MUTATED TP53 WILD-TYPE 
        173.79         115.59 
  TP53 MUTATED TP53 WILD-TYPE 
         16.60          18.54 
[1] "0.1 - 173.8 (16.6)" "1.9 - 115.6 (18.5)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
[1] "hr=" "1.5"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     36  104
  TP53 WILD-TYPE   11   27
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           36             11
  MALE            104             27
D1V4, continuous
D1V5, multiclass
                                                             clus
vv                                                            TP53 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          134
                                                             clus
vv                                                            TP53 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             38
D1V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1           27              9
  T2           91             25
  T3           10              4
  T4           12              0
D1V7, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           91             26
  N1           31              8
  N2           15              2
  N3            3              2
D1V8, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0          131             34
  M1            2              1
  MX            3              3
D1V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  I                74             23
  II               30              8
  III+IV           34              7
D1V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      4  136
  TP53 WILD-TYPE    0   38
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             4              0
  YES          136             38
D1V11, continuous
D1V12, continuous
D1V13, multiclass
                                             clus
vv                                            TP53 MUTATED TP53 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           76             18
  CURRENT REFORMED SMOKER FOR > 15 YEARS                32             11
  CURRENT SMOKER                                        23              5
  LIFELONG NON-SMOKER                                    4              4
D1V14, continuous

Clustering(2) Variable = CDKN2A MUTATION ANALYSIS
D2V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED   11 14
  CDKN2A WILD-TYPE 86 56
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              25              142 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              14               56 
$`CDKN2A MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3416 TCGA-21-5786 TCGA-21-5787 
        4.47        46.52        11.34        28.34        21.57        10.82 
TCGA-22-1012 TCGA-22-4593 TCGA-22-4599 TCGA-22-5477 TCGA-22-5492 TCGA-33-4538 
       14.10        35.08        38.17        44.22        16.60        97.94 
TCGA-34-2596 TCGA-34-5231 TCGA-37-4135 TCGA-39-5027 TCGA-39-5028 TCGA-43-3394 
        2.63        50.24         6.81        60.76         1.71        11.57 
TCGA-51-4080 TCGA-60-2698 TCGA-60-2725 TCGA-60-2726 TCGA-66-2786 TCGA-66-2787 
        0.39        10.22        23.64        11.77        25.97        40.01 
TCGA-66-2792 
       30.02 

$`CDKN2A WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46         4.80        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16       115.59        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-22-0944 TCGA-22-1002 
       15.55         9.30        31.63        29.85         7.33         4.31 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
        1.74        27.02        20.45        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       14.07        19.76        61.61        32.84        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         7.82         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 
       74.07        44.71        68.58        55.17        70.03        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.42         9.96         0.95         0.59         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
        1.94        22.98         4.04         5.03        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            0.39             0.10 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           97.94           173.79 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           21.57            17.42 
[1] "0.4 - 97.9 (21.6)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
[1] "hr=" "1.4"
D2V2, continuous
D2V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      6   20
  CDKN2A WILD-TYPE   41  111
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              6               41
  MALE               20              111
D2V4, continuous
D2V5, multiclass
                                                             clus
vv                                                            CDKN2A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             25
                                                             clus
vv                                                            CDKN2A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              147
D2V6, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  T1              5               31
  T2             19               97
  T3              0               14
  T4              2               10
D2V7, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  N0             15              102
  N1              7               32
  N2              4               13
  N3              0                5
D2V8, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  M0             25              140
  M1              0                3
  MX              0                6
D2V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  I                  13               84
  II                  6               32
  III+IV              7               34
D2V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      1   25
  CDKN2A WILD-TYPE    3  149
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               1                3
  YES             25              149
D2V11, continuous
D2V12, continuous
D2V13, multiclass
                                             clus
vv                                            CDKN2A MUTATED CDKN2A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   7               36
  CURRENT SMOKER                                           7               21
  LIFELONG NON-SMOKER                                      1                7
D2V14, continuous

Clustering(3) Variable = NFE2L2 MUTATION ANALYSIS
D3V1, survival
                  sevent
clus2               0  1
  NFE2L2 MUTATED   14 12
  NFE2L2 WILD-TYPE 83 58
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              26              141 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              12               58 
$`NFE2L2 MUTATED`
TCGA-18-3411 TCGA-18-3415 TCGA-18-4721 TCGA-18-5592 TCGA-21-1071 TCGA-22-5473 
       46.52        59.51        90.51         3.02        46.88        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5482 TCGA-33-4586 TCGA-34-2596 TCGA-34-2608 
       14.60        44.22        11.74        14.07         2.63        32.84 
TCGA-34-5236 TCGA-34-5240 TCGA-37-4135 TCGA-39-5022 TCGA-46-3768 TCGA-51-4079 
        9.04         7.73         6.81        55.17         9.96         0.39 
TCGA-51-4081 TCGA-56-5897 TCGA-60-2709 TCGA-66-2766 TCGA-66-2770 TCGA-66-2783 
        2.07         0.10        49.48         1.02        23.01        24.95 
TCGA-66-2787 TCGA-66-2795 
       40.01         4.01 

$`NFE2L2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
        2.79        27.16       115.59        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
        9.30        31.63        29.85        21.57        10.82         7.33 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        4.31         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 
       31.69        64.90         0.79        71.34        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2600 TCGA-34-5231 
      173.79       103.53       141.34        19.76        61.61        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       51.78        32.68        10.82        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         7.82         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 
        6.02         2.79         5.42         0.95         0.59         0.39 
TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       28.93         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01         2.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
            0.10             0.36 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
           90.51           173.79 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
          14.335           18.080 
[1] "0.1 - 90.5 (14.3)"  "0.4 - 173.8 (18.1)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NFE2L2 MUTATED      4   23
  NFE2L2 WILD-TYPE   43  108
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  FEMALE              4               43
  MALE               23              108
D3V4, continuous
D3V5, multiclass
                                                             clus
vv                                                            NFE2L2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             26
                                                             clus
vv                                                            NFE2L2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              146
D3V6, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  T1              5               31
  T2             17               99
  T3              4               10
  T4              1               11
D3V7, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  N0             18               99
  N1              5               34
  N2              3               14
  N3              1                4
D3V8, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  M0             24              141
  M1              0                3
  MX              2                4
D3V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  I                  15               82
  II                  5               33
  III+IV              7               34
D3V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NFE2L2 MUTATED      0   27
  NFE2L2 WILD-TYPE    4  147
     clus
vv    NFE2L2 MUTATED NFE2L2 WILD-TYPE
  NO               0                4
  YES             27              147
D3V11, continuous
D3V12, continuous
D3V13, multiclass
                                             clus
vv                                            NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   8               35
  CURRENT SMOKER                                           7               21
  LIFELONG NON-SMOKER                                      0                8
D3V14, continuous

Clustering(4) Variable = TPTE MUTATION ANALYSIS
D4V1, survival
                sevent
clus2             0  1
  TPTE MUTATED   14  8
  TPTE WILD-TYPE 83 62
  TPTE MUTATED TPTE WILD-TYPE 
            22            145 
  TPTE MUTATED TPTE WILD-TYPE 
             8             62 
$`TPTE MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3416 TCGA-18-3421 TCGA-18-5592 TCGA-22-4599 
       79.46         4.80        28.34        43.76         3.02        38.17 
TCGA-22-4613 TCGA-22-5473 TCGA-22-5482 TCGA-22-5492 TCGA-39-5016 TCGA-43-5668 
       11.77        63.52        11.74        16.60        74.07         8.48 
TCGA-46-6026 TCGA-51-4080 TCGA-56-6545 TCGA-60-2722 TCGA-60-2726 TCGA-66-2742 
        0.59         0.39         2.04        24.10        11.77        21.07 
TCGA-66-2757 TCGA-66-2766 TCGA-66-2783 TCGA-66-2795 
        0.99         1.02        24.95         4.01 

$`TPTE WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       59.51        24.92         1.61         6.15         2.79        90.51 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       27.16       115.59        46.88        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
        9.30        31.63        29.85        21.57        10.82         7.33 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        4.31         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       24.13        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22         0.79        71.34        30.08        62.86 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 
        0.43         7.82         6.81         0.39         3.39        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 
        5.42         9.96         0.95         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
        3.16        26.07        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 
       43.10         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         0.99         2.01         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 
        5.03        30.02        10.06        54.08        49.05         0.36 
TCGA-85-6561 
        0.79 

  TPTE MUTATED TPTE WILD-TYPE 
          0.39           0.10 
  TPTE MUTATED TPTE WILD-TYPE 
         79.46         173.79 
  TPTE MUTATED TPTE WILD-TYPE 
         11.77          18.84 
[1] "0.4 - 79.5 (11.8)"  "0.1 - 173.8 (18.8)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
[1] "hr=" "1"  
D4V2, continuous
D4V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      6   18
  TPTE WILD-TYPE   41  113
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            6             41
  MALE             18            113
D4V4, continuous
D4V5, multiclass
                                                             clus
vv                                                            TPTE MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           21
                                                             clus
vv                                                            TPTE WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            151
D4V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            5             31
  T2           13            103
  T3            3             11
  T4            3              9
D4V7, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0           12            105
  N1            9             30
  N2            2             15
  N3            1              4
D4V8, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  M0           22            143
  M1            1              2
  MX            0              6
D4V9, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  I                 8             89
  II                8             30
  III+IV            7             34
D4V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      1   23
  TPTE WILD-TYPE    3  151
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  NO             1              3
  YES           23            151
D4V11, continuous
D4V12, continuous
D4V13, multiclass
                                             clus
vv                                            TPTE MUTATED TPTE WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           13             81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 9             34
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D4V14, continuous

Clustering(5) Variable = PIK3CA MUTATION ANALYSIS
D5V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   11 14
  PIK3CA WILD-TYPE 86 56
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              25              142 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              14               56 
$`PIK3CA MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3414 TCGA-18-5595 TCGA-21-1071 TCGA-21-1078 
        4.47         4.80        13.02        27.16        46.88        15.55 
TCGA-21-5782 TCGA-22-4613 TCGA-22-5473 TCGA-22-5489 TCGA-22-5491 TCGA-33-4547 
       31.63        11.77        63.52        62.86        56.32        43.10 
TCGA-33-4583 TCGA-34-5232 TCGA-37-3783 TCGA-37-5819 TCGA-51-4079 TCGA-60-2724 
      141.34        51.78         3.95         3.39         0.39         1.22 
TCGA-60-2726 TCGA-66-2755 TCGA-66-2759 TCGA-66-2766 TCGA-66-2773 TCGA-66-2785 
       11.77         0.92        25.02         1.02         3.02         1.94 
TCGA-85-6560 
        0.36 

$`PIK3CA WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16        81.07        79.46        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1081 
       90.51         3.02       115.59        60.89        34.78         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       34.75        13.12        19.30        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 
       44.22         0.79        71.34        11.74        30.08        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 
       82.98       114.05        97.94       173.79       103.53        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 
       19.76         2.63        61.61        32.84        50.24        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        4.96         0.43         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       24.10        22.78        23.64        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
        0.99         2.01         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        2.01         2.01         2.01        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       54.08         4.01        49.05         0.79 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.36             0.10 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
          141.34           173.79 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           11.77            18.92 
[1] "0.4 - 141.3 (11.8)" "0.1 - 173.8 (18.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.6"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      4   23
  PIK3CA WILD-TYPE   43  108
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE              4               43
  MALE               23              108
D5V4, continuous
D5V5, multiclass
                                                             clus
vv                                                            PIK3CA MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             27
                                                             clus
vv                                                            PIK3CA WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              145
D5V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              6               30
  T2             15              101
  T3              5                9
  T4              1               11
D5V7, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0             17              100
  N1              6               33
  N2              4               13
  N3              0                5
D5V8, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  M0             25              140
  M1              1                2
  MX              0                6
D5V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  I                  16               81
  II                  2               36
  III+IV              9               32
D5V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      0   27
  PIK3CA WILD-TYPE    4  147
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO               0                4
  YES             27              147
D5V11, continuous
D5V12, continuous
D5V13, multiclass
                                             clus
vv                                            PIK3CA MUTATED PIK3CA WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  10               33
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      2                6
D5V14, continuous

Clustering(6) Variable = KEAP1 MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2              0  1
  KEAP1 MUTATED   15  6
  KEAP1 WILD-TYPE 82 64
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             21             146 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
              6              64 
$`KEAP1 MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-5595 TCGA-21-1077 TCGA-22-4599 TCGA-33-4532 
        4.47        79.46        27.16        34.78        38.17        82.98 
TCGA-33-4538 TCGA-37-4133 TCGA-39-5031 TCGA-39-5036 TCGA-43-2578 TCGA-43-6143 
       97.94         7.82        27.35        35.64        18.08         7.00 
TCGA-46-6025 TCGA-51-4081 TCGA-60-2710 TCGA-60-2722 TCGA-60-2723 TCGA-66-2754 
        0.95         2.07        55.40        24.10        22.78         2.01 
TCGA-66-2756 TCGA-66-2773 TCGA-66-2777 
        0.99         3.02         2.01 

$`KEAP1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        2.79        90.51         3.02       115.59        46.88        60.89 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
       15.55         9.30        31.63        29.85        21.57        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       35.08        24.13        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         0.43         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5037 
       60.76         1.71        24.33         1.94        15.58         0.79 
TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 
       17.88        11.57        18.84         8.48         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 
        5.42         9.96         0.59         0.39         0.39        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       49.48        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
        3.16        26.07         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       43.10        21.07         0.99         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       23.01        19.00        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  KEAP1 MUTATED KEAP1 WILD-TYPE 
           0.95            0.10 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          97.94          173.79 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          22.78           16.78 
[1] "0.9 - 97.9 (22.8)"  "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
[1] "hr=" "1.6"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      5   16
  KEAP1 WILD-TYPE   42  115
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  FEMALE             5              42
  MALE              16             115
D6V4, continuous
D6V5, multiclass
                                                             clus
vv                                                            KEAP1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            19
                                                             clus
vv                                                            KEAP1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             153
D6V6, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  T1             4              32
  T2            15             101
  T3             0              14
  T4             2              10
D6V7, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  N0            14             103
  N1             5              34
  N2             2              15
  N3             0               5
D6V8, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  M0            21             144
  M1             0               3
  MX             0               6
D6V9, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  I                 11              86
  II                 5              33
  III+IV             4              37
D6V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      0   21
  KEAP1 WILD-TYPE    4  153
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  NO              0               4
  YES            21             153
D6V11, continuous
D6V12, continuous
D6V13, multiclass
                                             clus
vv                                            KEAP1 MUTATED KEAP1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              39
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     1               7
D6V14, continuous

Clustering(7) Variable = SI MUTATION ANALYSIS
D7V1, survival
              sevent
clus2           0  1
  SI MUTATED   18 14
  SI WILD-TYPE 79 56
  SI MUTATED SI WILD-TYPE 
          32          135 
  SI MUTATED SI WILD-TYPE 
          14           56 
$`SI MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3412 TCGA-18-3419 TCGA-18-4083 TCGA-21-1078 
       12.16        79.46        11.34         1.61         6.15        15.55 
TCGA-21-5787 TCGA-22-5473 TCGA-33-4566 TCGA-33-4586 TCGA-34-2600 TCGA-34-5231 
       10.82        63.52       173.79        14.07        61.61        50.24 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5928 TCGA-39-5036 TCGA-43-3920 TCGA-46-3768 
       32.68         9.04         5.52        35.64        18.84         9.96 
TCGA-60-2698 TCGA-60-2713 TCGA-60-2722 TCGA-66-2727 TCGA-66-2756 TCGA-66-2758 
       10.22        47.87        24.10        16.96         0.99        20.98 
TCGA-66-2767 TCGA-66-2771 TCGA-66-2781 TCGA-66-2787 TCGA-66-2788 TCGA-66-2793 
        2.01        19.00         3.98        40.01        22.98        10.06 
TCGA-66-2795 TCGA-85-6560 
        4.01         0.36 

$`SI WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 
        4.47        81.07         4.80        46.52        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34        24.92        43.76         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1081 
       27.16       115.59        46.88        60.89        34.78         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 
       43.10       103.53       141.34        19.76         2.63        32.84 
TCGA-34-5232 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
       51.78        10.82         7.73        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 
        1.71        24.33         1.94        27.35        15.58         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.79         5.42         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        2.07        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 
       68.45        49.48        55.40        29.19         9.01        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       11.77        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        0.99        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       23.01         3.02         2.01        19.00        12.03        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       24.95         1.94        25.97         4.04         5.03        30.02 
TCGA-66-2794 TCGA-66-2800 TCGA-85-6561 
       54.08        49.05         0.79 

  SI MUTATED SI WILD-TYPE 
        0.36         0.10 
  SI MUTATED SI WILD-TYPE 
      173.79       141.34 
  SI MUTATED SI WILD-TYPE 
       14.81        19.00 
[1] "0.4 - 173.8 (14.8)" "0.1 - 141.3 (19.0)"
  TCGA-18-3406   TCGA-18-3407   TCGA-18-3408   TCGA-18-3409   TCGA-18-3410 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3411   TCGA-18-3412   TCGA-18-3414   TCGA-18-3415   TCGA-18-3416 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-18-3417   TCGA-18-3419   TCGA-18-3421   TCGA-18-4083   TCGA-18-4086 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-4721   TCGA-18-5592   TCGA-18-5595   TCGA-21-1070   TCGA-21-1071 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-1076   TCGA-21-1077   TCGA-21-1078   TCGA-21-1081   TCGA-21-5782 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-5784   TCGA-21-5786   TCGA-21-5787   TCGA-22-0944   TCGA-22-1002 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-1011   TCGA-22-1012   TCGA-22-1016   TCGA-22-4591   TCGA-22-4593 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4595   TCGA-22-4599   TCGA-22-4601   TCGA-22-4604   TCGA-22-4607 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4613   TCGA-22-5471   TCGA-22-5472   TCGA-22-5473   TCGA-22-5474 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-22-5477   TCGA-22-5478   TCGA-22-5480   TCGA-22-5482   TCGA-22-5485 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-5489   TCGA-22-5491   TCGA-22-5492   TCGA-33-4532   TCGA-33-4533 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4538   TCGA-33-4547   TCGA-33-4566   TCGA-33-4582   TCGA-33-4583 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4586   TCGA-33-6737   TCGA-34-2596   TCGA-34-2600   TCGA-34-2608 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5231   TCGA-34-5232   TCGA-34-5234   TCGA-34-5236   TCGA-34-5239 
  "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5240   TCGA-34-5241   TCGA-34-5927   TCGA-34-5928   TCGA-34-5929 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-37-3783   TCGA-37-3789   TCGA-37-4133   TCGA-37-4135   TCGA-37-4141 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-37-5819   TCGA-39-5016   TCGA-39-5019   TCGA-39-5021   TCGA-39-5022 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5024   TCGA-39-5027   TCGA-39-5028   TCGA-39-5029   TCGA-39-5030 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5031   TCGA-39-5035   TCGA-39-5036   TCGA-39-5037   TCGA-39-5039 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-2578   TCGA-43-3394   TCGA-43-3920   TCGA-43-5668   TCGA-43-6143 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-6647   TCGA-43-6770   TCGA-43-6771   TCGA-46-3768   TCGA-46-6025 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-46-6026   TCGA-51-4079   TCGA-51-4080   TCGA-51-4081   TCGA-56-1622 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-56-5897   TCGA-56-6545   TCGA-56-6546   TCGA-60-2698   TCGA-60-2707 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-60-2708   TCGA-60-2709   TCGA-60-2710   TCGA-60-2711   TCGA-60-2712 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2713   TCGA-60-2715   TCGA-60-2719   TCGA-60-2720   TCGA-60-2721 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2722   TCGA-60-2723   TCGA-60-2724   TCGA-60-2725   TCGA-60-2726 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2727   TCGA-66-2734   TCGA-66-2742   TCGA-66-2744   TCGA-66-2754 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2755   TCGA-66-2756   TCGA-66-2757   TCGA-66-2758   TCGA-66-2759 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2763   TCGA-66-2765   TCGA-66-2766   TCGA-66-2767   TCGA-66-2768 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2770   TCGA-66-2771   TCGA-66-2773   TCGA-66-2777   TCGA-66-2778 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2780   TCGA-66-2781   TCGA-66-2782   TCGA-66-2783   TCGA-66-2785 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2786   TCGA-66-2787   TCGA-66-2788   TCGA-66-2789   TCGA-66-2791 
"SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2792   TCGA-66-2793   TCGA-66-2794   TCGA-66-2795   TCGA-66-2800 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-85-6560   TCGA-85-6561 
  "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3406   TCGA-18-3407   TCGA-18-3408   TCGA-18-3409   TCGA-18-3410 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3411   TCGA-18-3412   TCGA-18-3414   TCGA-18-3415   TCGA-18-3416 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-18-3417   TCGA-18-3419   TCGA-18-3421   TCGA-18-4083   TCGA-18-4086 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-4721   TCGA-18-5592   TCGA-18-5595   TCGA-21-1070   TCGA-21-1071 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-1076   TCGA-21-1077   TCGA-21-1078   TCGA-21-1081   TCGA-21-5782 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-5784   TCGA-21-5786   TCGA-21-5787   TCGA-22-0944   TCGA-22-1002 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-1011   TCGA-22-1012   TCGA-22-1016   TCGA-22-4591   TCGA-22-4593 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4595   TCGA-22-4599   TCGA-22-4601   TCGA-22-4604   TCGA-22-4607 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4613   TCGA-22-5471   TCGA-22-5472   TCGA-22-5473   TCGA-22-5474 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-22-5477   TCGA-22-5478   TCGA-22-5480   TCGA-22-5482   TCGA-22-5485 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-5489   TCGA-22-5491   TCGA-22-5492   TCGA-33-4532   TCGA-33-4533 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4538   TCGA-33-4547   TCGA-33-4566   TCGA-33-4582   TCGA-33-4583 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4586   TCGA-33-6737   TCGA-34-2596   TCGA-34-2600   TCGA-34-2608 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5231   TCGA-34-5232   TCGA-34-5234   TCGA-34-5236   TCGA-34-5239 
  "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5240   TCGA-34-5241   TCGA-34-5927   TCGA-34-5928   TCGA-34-5929 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-37-3783   TCGA-37-3789   TCGA-37-4133   TCGA-37-4135   TCGA-37-4141 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-37-5819   TCGA-39-5016   TCGA-39-5019   TCGA-39-5021   TCGA-39-5022 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5024   TCGA-39-5027   TCGA-39-5028   TCGA-39-5029   TCGA-39-5030 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5031   TCGA-39-5035   TCGA-39-5036   TCGA-39-5037   TCGA-39-5039 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-2578   TCGA-43-3394   TCGA-43-3920   TCGA-43-5668   TCGA-43-6143 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-6647   TCGA-43-6770   TCGA-43-6771   TCGA-46-3768   TCGA-46-6025 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-46-6026   TCGA-51-4079   TCGA-51-4080   TCGA-51-4081   TCGA-56-1622 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-56-5897   TCGA-56-6545   TCGA-56-6546   TCGA-60-2698   TCGA-60-2707 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-60-2708   TCGA-60-2709   TCGA-60-2710   TCGA-60-2711   TCGA-60-2712 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2713   TCGA-60-2715   TCGA-60-2719   TCGA-60-2720   TCGA-60-2721 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2722   TCGA-60-2723   TCGA-60-2724   TCGA-60-2725   TCGA-60-2726 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2727   TCGA-66-2734   TCGA-66-2742   TCGA-66-2744   TCGA-66-2754 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2755   TCGA-66-2756   TCGA-66-2757   TCGA-66-2758   TCGA-66-2759 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2763   TCGA-66-2765   TCGA-66-2766   TCGA-66-2767   TCGA-66-2768 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2770   TCGA-66-2771   TCGA-66-2773   TCGA-66-2777   TCGA-66-2778 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2780   TCGA-66-2781   TCGA-66-2782   TCGA-66-2783   TCGA-66-2785 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2786   TCGA-66-2787   TCGA-66-2788   TCGA-66-2789   TCGA-66-2791 
"SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2792   TCGA-66-2793   TCGA-66-2794   TCGA-66-2795   TCGA-66-2800 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-85-6560   TCGA-85-6561 
  "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3406   TCGA-18-3407   TCGA-18-3408   TCGA-18-3409   TCGA-18-3410 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3411   TCGA-18-3412   TCGA-18-3414   TCGA-18-3415   TCGA-18-3416 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-18-3417   TCGA-18-3419   TCGA-18-3421   TCGA-18-4083   TCGA-18-4086 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-4721   TCGA-18-5592   TCGA-18-5595   TCGA-21-1070   TCGA-21-1071 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-1076   TCGA-21-1077   TCGA-21-1078   TCGA-21-1081   TCGA-21-5782 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-5784   TCGA-21-5786   TCGA-21-5787   TCGA-22-0944   TCGA-22-1002 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-1011   TCGA-22-1012   TCGA-22-1016   TCGA-22-4591   TCGA-22-4593 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4595   TCGA-22-4599   TCGA-22-4601   TCGA-22-4604   TCGA-22-4607 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4613   TCGA-22-5471   TCGA-22-5472   TCGA-22-5473   TCGA-22-5474 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-22-5477   TCGA-22-5478   TCGA-22-5480   TCGA-22-5482   TCGA-22-5485 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-5489   TCGA-22-5491   TCGA-22-5492   TCGA-33-4532   TCGA-33-4533 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4538   TCGA-33-4547   TCGA-33-4566   TCGA-33-4582   TCGA-33-4583 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4586   TCGA-33-6737   TCGA-34-2596   TCGA-34-2600   TCGA-34-2608 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5231   TCGA-34-5232   TCGA-34-5234   TCGA-34-5236   TCGA-34-5239 
  "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5240   TCGA-34-5241   TCGA-34-5927   TCGA-34-5928   TCGA-34-5929 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-37-3783   TCGA-37-3789   TCGA-37-4133   TCGA-37-4135   TCGA-37-4141 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-37-5819   TCGA-39-5016   TCGA-39-5019   TCGA-39-5021   TCGA-39-5022 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5024   TCGA-39-5027   TCGA-39-5028   TCGA-39-5029   TCGA-39-5030 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5031   TCGA-39-5035   TCGA-39-5036   TCGA-39-5037   TCGA-39-5039 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-2578   TCGA-43-3394   TCGA-43-3920   TCGA-43-5668   TCGA-43-6143 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-6647   TCGA-43-6770   TCGA-43-6771   TCGA-46-3768   TCGA-46-6025 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-46-6026   TCGA-51-4079   TCGA-51-4080   TCGA-51-4081   TCGA-56-1622 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-56-5897   TCGA-56-6545   TCGA-56-6546   TCGA-60-2698   TCGA-60-2707 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-60-2708   TCGA-60-2709   TCGA-60-2710   TCGA-60-2711   TCGA-60-2712 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2713   TCGA-60-2715   TCGA-60-2719   TCGA-60-2720   TCGA-60-2721 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2722   TCGA-60-2723   TCGA-60-2724   TCGA-60-2725   TCGA-60-2726 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2727   TCGA-66-2734   TCGA-66-2742   TCGA-66-2744   TCGA-66-2754 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2755   TCGA-66-2756   TCGA-66-2757   TCGA-66-2758   TCGA-66-2759 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2763   TCGA-66-2765   TCGA-66-2766   TCGA-66-2767   TCGA-66-2768 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2770   TCGA-66-2771   TCGA-66-2773   TCGA-66-2777   TCGA-66-2778 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2780   TCGA-66-2781   TCGA-66-2782   TCGA-66-2783   TCGA-66-2785 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2786   TCGA-66-2787   TCGA-66-2788   TCGA-66-2789   TCGA-66-2791 
"SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2792   TCGA-66-2793   TCGA-66-2794   TCGA-66-2795   TCGA-66-2800 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-85-6560   TCGA-85-6561 
  "SI MUTATED" "SI WILD-TYPE" 
[1] "hr=" "1"  
D7V2, continuous
D7V3, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  SI MUTATED      4   32
  SI WILD-TYPE   43   99
        clus
vv       SI MUTATED SI WILD-TYPE
  FEMALE          4           43
  MALE           32           99
D7V4, continuous
D7V5, multiclass
                                                             clus
vv                                                            SI MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                               1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)         34
                                                             clus
vv                                                            SI WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          138
D7V6, multiclass
    clus
vv   SI MUTATED SI WILD-TYPE
  T1          6           30
  T2         22           94
  T3          4           10
  T4          4            8
D7V7, multiclass
    clus
vv   SI MUTATED SI WILD-TYPE
  N0         23           94
  N1         10           29
  N2          2           15
  N3          1            4
D7V8, multiclass
    clus
vv   SI MUTATED SI WILD-TYPE
  M0         36          129
  M1          0            3
  MX          0            6
D7V9, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  I              17           80
  II             10           28
  III+IV          8           33
D7V10, binary
[1] "tbl2"
              cls
clus           [,1] [,2]
  SI MUTATED      1   35
  SI WILD-TYPE    3  139
     clus
vv    SI MUTATED SI WILD-TYPE
  NO           1            3
  YES         35          139
D7V11, continuous
D7V12, continuous
D7V13, multiclass
                                             clus
vv                                            SI MUTATED SI WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS         25           69
  CURRENT REFORMED SMOKER FOR > 15 YEARS               5           38
  CURRENT SMOKER                                       3           25
  LIFELONG NON-SMOKER                                  2            6
D7V14, continuous

Clustering(8) Variable = PTEN MUTATION ANALYSIS
D8V1, survival
                sevent
clus2             0  1
  PTEN MUTATED   12  2
  PTEN WILD-TYPE 85 68
  PTEN MUTATED PTEN WILD-TYPE 
            14            153 
  PTEN MUTATED PTEN WILD-TYPE 
             2             68 
$`PTEN MUTATED`
TCGA-18-3417 TCGA-18-3421 TCGA-22-4599 TCGA-22-5489 TCGA-33-4583 TCGA-39-5024 
       24.92        43.76        38.17        62.86       141.34        70.03 
TCGA-39-5027 TCGA-43-2578 TCGA-43-3920 TCGA-56-5897 TCGA-56-6546 TCGA-60-2707 
       60.76        18.08        18.84         0.10         1.02        21.70 
TCGA-66-2783 TCGA-66-2788 
       24.95        22.98 

$`PTEN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 
       11.34        13.02        59.51        28.34         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       27.02        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 
       44.22         0.79        71.34        11.74        30.08        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       68.58        55.17         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-5668 
       15.58        35.64         0.79        17.88        11.57         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-6545 
        0.59         0.39         0.39         2.07        28.93         2.04 
TCGA-60-2698 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       10.22        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00         1.94        25.97        40.01 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  PTEN MUTATED PTEN WILD-TYPE 
          0.10           0.36 
  PTEN MUTATED PTEN WILD-TYPE 
        141.34         173.79 
  PTEN MUTATED PTEN WILD-TYPE 
        24.935         14.600 
[1] "0.1 - 141.3 (24.9)" "0.4 - 173.8 (14.6)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr=" "4.6"
D8V2, continuous
D8V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      3   11
  PTEN WILD-TYPE   44  120
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            3             44
  MALE             11            120
D8V4, continuous
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4601     TCGA-22-4604 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5491     TCGA-22-5492     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
D8V5, multiclass
                                                             clus
vv                                                            PTEN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           14
                                                             clus
vv                                                            PTEN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            158
D8V6, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T1            4             32
  T2           10            106
  T3            0             14
  T4            0             12
D8V7, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  N0           11            106
  N1            1             38
  N2            1             16
  N3            1              4
D8V8, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  M0           11            154
  M1            1              2
  MX            2              4
D8V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  I                10             87
  II                0             38
  III+IV            3             38
D8V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      0   14
  PTEN WILD-TYPE    4  160
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  NO             0              4
  YES           14            160
D8V11, continuous
D8V12, continuous
D8V13, multiclass
                                             clus
vv                                            PTEN MUTATED PTEN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           10             84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             40
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D8V14, continuous

Clustering(9) Variable = OR5L2 MUTATION ANALYSIS
D9V1, survival
                 sevent
clus2              0  1
  OR5L2 MUTATED    9  4
  OR5L2 WILD-TYPE 88 66
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             154 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
              4              66 
$`OR5L2 MUTATED`
TCGA-18-3409 TCGA-18-3421 TCGA-21-5782 TCGA-22-4595 TCGA-22-4604 TCGA-33-4586 
       79.46        43.76        31.63        24.13        13.12        14.07 
TCGA-34-5234 TCGA-37-5819 TCGA-60-2723 TCGA-66-2758 TCGA-66-2794 TCGA-66-2800 
       32.68         3.39        22.78        20.98        54.08        49.05 
TCGA-85-6560 
        0.36 

$`OR5L2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       13.02        59.51        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 
       20.45        35.08        38.17        34.75        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       51.78         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        24.10         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99         0.99        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-85-6561 
       30.02        10.06         4.01         0.79 

  OR5L2 MUTATED OR5L2 WILD-TYPE 
           0.36            0.10 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
          79.46          173.79 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
          24.13           16.09 
[1] "0.4 - 79.5 (24.1)"  "0.1 - 173.8 (16.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "OR5L2 MUTATED"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "OR5L2 MUTATED"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "OR5L2 MUTATED"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
[1] "hr=" "1.6"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      3   10
  OR5L2 WILD-TYPE   44  121
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  FEMALE             3              44
  MALE              10             121
D9V4, continuous
D9V5, multiclass
                                                             clus
vv                                                            OR5L2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            OR5L2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
D9V6, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  T1             2              34
  T2             8             108
  T3             1              13
  T4             2              10
D9V7, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  N0             7             110
  N1             2              37
  N2             4              13
  N3             0               5
D9V8, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  M0            12             153
  M1             0               3
  MX             0               6
D9V9, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             6              35
D9V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      1   12
  OR5L2 WILD-TYPE    3  162
     clus
vv    OR5L2 MUTATED OR5L2 WILD-TYPE
  NO              1               3
  YES            12             162
D9V11, continuous
D9V12, continuous
D9V13, multiclass
                                             clus
vv                                            OR5L2 MUTATED OR5L2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D9V14, continuous

Clustering(10) Variable = FAM5C MUTATION ANALYSIS
D10V1, survival
                 sevent
clus2              0  1
  FAM5C MUTATED   13 13
  FAM5C WILD-TYPE 84 57
  FAM5C MUTATED FAM5C WILD-TYPE 
             26             141 
  FAM5C MUTATED FAM5C WILD-TYPE 
             13              57 
$`FAM5C MUTATED`
TCGA-18-3411 TCGA-18-3419 TCGA-18-5592 TCGA-21-1070 TCGA-21-5786 TCGA-21-5787 
       46.52         1.61         3.02       115.59        21.57        10.82 
TCGA-22-1002 TCGA-22-4613 TCGA-33-4532 TCGA-33-4538 TCGA-33-4566 TCGA-34-2596 
        4.31        11.77        82.98        97.94       173.79         2.63 
TCGA-34-5239 TCGA-34-5927 TCGA-37-3783 TCGA-39-5028 TCGA-39-5036 TCGA-39-5039 
       10.82        22.95         3.95         1.71        35.64        17.88 
TCGA-43-6771 TCGA-51-4079 TCGA-51-4080 TCGA-60-2708 TCGA-60-2726 TCGA-66-2754 
        5.42         0.39         0.39        68.45        11.77         2.01 
TCGA-66-2766 TCGA-66-2773 
        1.02         3.02 

$`FAM5C WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
        2.79        90.51        27.16        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-22-0944 TCGA-22-1011 
       15.55         9.30        31.63        29.85         7.33         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 TCGA-33-4582 
       62.86        56.32        16.60       114.05        43.10       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        14.07        19.76        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       51.78        32.68         9.04         7.73        14.07         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-2578 
       24.33         1.94        27.35        15.58         0.79        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        9.96         0.95         0.59         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        10.22        21.70        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       26.07        24.10        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         0.99         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  FAM5C MUTATED FAM5C WILD-TYPE 
           0.39            0.10 
  FAM5C MUTATED FAM5C WILD-TYPE 
         173.79          141.34 
  FAM5C MUTATED FAM5C WILD-TYPE 
          10.82           19.00 
[1] "0.4 - 173.8 (10.8)" "0.1 - 141.3 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
D10V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      6   21
  FAM5C WILD-TYPE   41  110
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  FEMALE             6              41
  MALE              21             110
D10V4, continuous
D10V5, multiclass
                                                             clus
vv                                                            FAM5C MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            26
                                                             clus
vv                                                            FAM5C WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             146
D10V6, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  T1             3              33
  T2            17              99
  T3             4              10
  T4             3               9
D10V7, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  N0            14             103
  N1             7              32
  N2             6              11
  N3             0               5
D10V8, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  M0            24             141
  M1             0               3
  MX             1               5
D10V9, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  I                 10              87
  II                 6              32
  III+IV            11              30
D10V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      1   26
  FAM5C WILD-TYPE    3  148
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  NO              1               3
  YES            26             148
D10V11, continuous
D10V12, continuous
D10V13, multiclass
                                             clus
vv                                            FAM5C MUTATED FAM5C WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            11              83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  7              36
  CURRENT SMOKER                                          5              23
  LIFELONG NON-SMOKER                                     1               7
D10V14, continuous

Clustering(11) Variable = TRIM58 MUTATION ANALYSIS
D11V1, survival
                  sevent
clus2               0  1
  TRIM58 MUTATED    9  5
  TRIM58 WILD-TYPE 88 65
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              14              153 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               5               65 
$`TRIM58 MUTATED`
TCGA-21-1076 TCGA-22-1016 TCGA-22-4599 TCGA-33-4566 TCGA-37-5819 TCGA-39-5031 
       60.89        27.02        38.17       173.79         3.39        27.35 
TCGA-43-5668 TCGA-43-6143 TCGA-60-2708 TCGA-60-2724 TCGA-66-2734 TCGA-66-2773 
        8.48         7.00        68.45         1.22        43.10         3.02 
TCGA-66-2793 TCGA-85-6561 
       10.06         0.79 

$`TRIM58 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
      115.59        46.88        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       14.10        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         6.81         0.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       11.57        18.84         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 
        0.10         2.04         1.02        10.22        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10        22.78        23.64        11.77 
TCGA-66-2727 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        23.01        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       40.01        22.98         4.04         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  TRIM58 MUTATED TRIM58 WILD-TYPE 
            0.79             0.10 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
          173.79           141.34 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
           18.54            17.88 
[1] "0.8 - 173.8 (18.5)" "0.1 - 141.3 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
[1] "hr=" "1.6"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      5   10
  TRIM58 WILD-TYPE   42  121
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  FEMALE              5               42
  MALE               10              121
D11V4, continuous
[1] "Remove cluster labels:" "TRIM58 MUTATED"        
clus
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-60-2698 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
D11V5, multiclass
                                                             clus
vv                                                            TRIM58 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             14
                                                             clus
vv                                                            TRIM58 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              158
D11V6, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  T1              2               34
  T2             11              105
  T3              1               13
  T4              1               11
D11V7, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  N0             10              107
  N1              4               35
  N2              1               16
  N3              0                5
D11V8, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  M0             15              150
  M1              0                3
  MX              0                6
D11V9, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  I                   8               89
  II                  4               34
  III+IV              3               38
D11V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      0   15
  TRIM58 WILD-TYPE    4  159
     clus
vv    TRIM58 MUTATED TRIM58 WILD-TYPE
  NO               0                4
  YES             15              159
D11V11, continuous
D11V12, continuous
D11V13, multiclass
                                             clus
vv                                            TRIM58 MUTATED TRIM58 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              9               85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D11V14, continuous

Clustering(12) Variable = REG1B MUTATION ANALYSIS
D12V1, survival
                 sevent
clus2              0  1
  REG1B MUTATED    6  4
  REG1B WILD-TYPE 91 66
  REG1B MUTATED REG1B WILD-TYPE 
             10             157 
  REG1B MUTATED REG1B WILD-TYPE 
              4              66 
$`REG1B MUTATED`
TCGA-18-3409 TCGA-18-4083 TCGA-22-5473 TCGA-34-2600 TCGA-34-5232 TCGA-34-5928 
       79.46         6.15        63.52        61.61        51.78         5.52 
TCGA-39-5037 TCGA-66-2781 TCGA-66-2789 TCGA-85-6560 
        0.79         3.98         4.04         0.36 

$`REG1B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       32.84        50.24        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       27.35        15.58        35.64        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6561 
        0.79 

  REG1B MUTATED REG1B WILD-TYPE 
           0.36            0.10 
  REG1B MUTATED REG1B WILD-TYPE 
          79.46          173.79 
  REG1B MUTATED REG1B WILD-TYPE 
          5.835          18.080 
[1] "0.4 - 79.5 (5.8)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
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"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
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"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
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"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
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"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
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"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
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"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
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"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
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"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
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"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
[1] "hr=" "1"  
D12V2, continuous
D12V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      3    8
  REG1B WILD-TYPE   44  123
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  FEMALE             3              44
  MALE               8             123
D12V4, continuous
[1] "Remove cluster labels:" "REG1B MUTATED"         
clus
  REG1B MUTATED REG1B WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
D12V5, multiclass
                                                             clus
vv                                                            REG1B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            REG1B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
D12V6, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  T1             5              31
  T2             5             111
  T3             1              13
  T4             0              12
D12V7, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  N0             5             112
  N1             5              34
  N2             0              17
  N3             1               4
D12V8, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  M0            11             154
  M1             0               3
  MX             0               6
D12V9, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  I                  3              94
  II                 5              33
  III+IV             2              39
D12V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      0   11
  REG1B WILD-TYPE    4  163
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  NO              0               4
  YES            11             163
D12V11, continuous
D12V12, continuous
D12V13, multiclass
                                             clus
vv                                            REG1B MUTATED REG1B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D12V14, continuous

Clustering(13) Variable = ELTD1 MUTATION ANALYSIS
D13V1, survival
                 sevent
clus2              0  1
  ELTD1 MUTATED    9  8
  ELTD1 WILD-TYPE 88 62
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             17             150 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              8              62 
$`ELTD1 MUTATED`
TCGA-18-3409 TCGA-18-3419 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 TCGA-22-5473 
       79.46         1.61         4.31        14.10        27.02        63.52 
TCGA-33-4566 TCGA-34-5239 TCGA-37-3783 TCGA-37-4133 TCGA-43-5668 TCGA-56-6546 
      173.79        10.82         3.95         7.82         8.48         1.02 
TCGA-60-2698 TCGA-60-2722 TCGA-60-2726 TCGA-66-2782 TCGA-85-6561 
       10.22        24.10        11.77        12.00         0.79 

$`ELTD1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-4591 TCGA-22-4593 
       21.57        10.82         7.33         1.74        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       31.69        64.90        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        4.96         0.43         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57        18.84         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2707 
        0.39         2.07        28.93         0.10         2.04        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       23.64        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
        3.02         2.01        19.00        12.03         3.98        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 

  ELTD1 MUTATED ELTD1 WILD-TYPE 
           0.79            0.10 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
         173.79          141.34 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
          10.82           19.00 
[1] "0.8 - 173.8 (10.8)" "0.1 - 141.3 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
[1] "hr=" "1.1"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      1   17
  ELTD1 WILD-TYPE   46  114
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  FEMALE             1              46
  MALE              17             114
D13V4, continuous
D13V5, multiclass
                                                             clus
vv                                                            ELTD1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            17
                                                             clus
vv                                                            ELTD1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             155
D13V6, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  T1             3              33
  T2             9             107
  T3             4              10
  T4             2              10
D13V7, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  N0            11             106
  N1             6              33
  N2             1              16
  N3             0               5
D13V8, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  M0            17             148
  M1             0               3
  MX             1               5
D13V9, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  I                  5              92
  II                 7              31
  III+IV             4              37
D13V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      0   18
  ELTD1 WILD-TYPE    4  156
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  NO              0               4
  YES            18             156
D13V11, continuous
D13V12, continuous
D13V13, multiclass
                                             clus
vv                                            ELTD1 MUTATED ELTD1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D13V14, continuous

Clustering(14) Variable = OR4M2 MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2              0  1
  OR4M2 MUTATED    7  4
  OR4M2 WILD-TYPE 90 66
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             11             156 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              4              66 
$`OR4M2 MUTATED`
TCGA-22-0944 TCGA-22-4591 TCGA-33-4533 TCGA-39-5037 TCGA-43-5668 TCGA-46-6026 
        7.33        20.45       114.05         0.79         8.48         0.59 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2770 TCGA-66-2773 TCGA-66-2791 
        0.99        20.98        23.01         3.02         5.03 

$`OR4M2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57        10.82         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60        82.98        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57        18.84         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
        2.79         5.42         9.96         0.95         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2759 
       21.07         0.99         2.01         0.92         0.99        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 
        0.99         2.01         1.02         2.01         2.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 
        1.94        25.97        40.01        22.98         4.04        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  OR4M2 MUTATED OR4M2 WILD-TYPE 
           0.59            0.10 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
         114.05          173.79 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
           7.33           18.46 
[1] "0.6 - 114.0 (7.3)"  "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
[1] "hr=" "1.2"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M2 MUTATED      2   12
  OR4M2 WILD-TYPE   45  119
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  FEMALE             2              45
  MALE              12             119
D14V4, continuous
[1] "Remove cluster labels:" "OR4M2 MUTATED"         
clus
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4593 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
D14V5, multiclass
                                                             clus
vv                                                            OR4M2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            OR4M2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
D14V6, multiclass
    clus
vv   OR4M2 MUTATED OR4M2 WILD-TYPE
  T1             4              32
  T2             8             108
  T3             2              12
  T4             0              12
D14V7, multiclass
    clus
vv   OR4M2 MUTATED OR4M2 WILD-TYPE
  N0             9             108
  N1             3              36
  N2             1              16
  N3             1               4
D14V8, multiclass
    clus
vv   OR4M2 MUTATED OR4M2 WILD-TYPE
  M0            14             151
  M1             0               3
  MX             0               6
D14V9, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  I                  7              90
  II                 5              33
  III+IV             2              39
D14V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M2 MUTATED      1   13
  OR4M2 WILD-TYPE    3  161
     clus
vv    OR4M2 MUTATED OR4M2 WILD-TYPE
  NO              1               3
  YES            13             161
D14V11, continuous
D14V12, continuous
D14V13, multiclass
                                             clus
vv                                            OR4M2 MUTATED OR4M2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D14V14, continuous

Clustering(15) Variable = DPPA4 MUTATION ANALYSIS
D15V1, survival
                 sevent
clus2              0  1
  DPPA4 MUTATED    6  4
  DPPA4 WILD-TYPE 91 66
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             10             157 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
              4              66 
$`DPPA4 MUTATED`
TCGA-18-3419 TCGA-22-5472 TCGA-22-5478 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 
        1.61        64.90         0.79        32.84        50.24        32.68 
TCGA-39-5027 TCGA-43-6143 TCGA-60-2698 TCGA-85-6561 
       60.76         7.00        10.22         0.79 

$`DPPA4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 
       34.75        13.12        19.30        11.77        31.69        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-5232 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       61.61        51.78         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         2.04         1.02        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 
        0.36 

  DPPA4 MUTATED DPPA4 WILD-TYPE 
           0.79            0.10 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
          64.90          173.79 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
          21.45           17.88 
[1] "0.8 - 64.9 (21.4)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "DPPA4 MUTATED"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "DPPA4 MUTATED"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "DPPA4 MUTATED"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
[1] "hr=" "1"  
D15V2, continuous
D15V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPPA4 MUTATED      1   11
  DPPA4 WILD-TYPE   46  120
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  FEMALE             1              46
  MALE              11             120
D15V4, continuous
D15V5, multiclass
                                                             clus
vv                                                            DPPA4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            DPPA4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
D15V6, multiclass
    clus
vv   DPPA4 MUTATED DPPA4 WILD-TYPE
  T1             3              33
  T2             8             108
  T3             0              14
  T4             1              11
D15V7, multiclass
    clus
vv   DPPA4 MUTATED DPPA4 WILD-TYPE
  N0            10             107
  N1             2              37
  N2             0              17
  N3             0               5
D15V8, multiclass
    clus
vv   DPPA4 MUTATED DPPA4 WILD-TYPE
  M0            12             153
  M1             0               3
  MX             0               6
D15V9, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  I                  8              89
  II                 4              34
  III+IV             0              41
D15V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPPA4 MUTATED      0   12
  DPPA4 WILD-TYPE    4  162
     clus
vv    DPPA4 MUTATED DPPA4 WILD-TYPE
  NO              0               4
  YES            12             162
D15V11, continuous
D15V12, continuous
D15V13, multiclass
                                             clus
vv                                            DPPA4 MUTATED DPPA4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D15V14, continuous

Clustering(16) Variable = LRRC4C MUTATION ANALYSIS
D16V1, survival
                  sevent
clus2               0  1
  LRRC4C MUTATED    4 11
  LRRC4C WILD-TYPE 93 59
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              15              152 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              11               59 
$`LRRC4C MUTATED`
TCGA-21-5782 TCGA-22-4591 TCGA-22-4613 TCGA-22-5473 TCGA-22-5491 TCGA-33-4566 
       31.63        20.45        11.77        63.52        56.32       173.79 
TCGA-34-5236 TCGA-34-5927 TCGA-37-4133 TCGA-43-6770 TCGA-43-6771 TCGA-51-4079 
        9.04        22.95         7.82         2.79         5.42         0.39 
TCGA-51-4080 TCGA-60-2698 TCGA-66-2785 
        0.39        10.22         1.94 

$`LRRC4C WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       13.12        19.30        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
        0.79        71.34        11.74        30.08        62.86        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       51.78        32.68        10.82         7.73        14.07         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 
        7.00         6.02         9.96         0.95         0.59         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  LRRC4C MUTATED LRRC4C WILD-TYPE 
            0.39             0.10 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
          173.79           141.34 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
           10.22            18.46 
[1] "0.4 - 173.8 (10.2)" "0.1 - 141.3 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
[1] "hr=" "1.9"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC4C MUTATED      5   12
  LRRC4C WILD-TYPE   42  119
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  FEMALE              5               42
  MALE               12              119
D16V4, continuous
D16V5, multiclass
                                                             clus
vv                                                            LRRC4C MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             16
                                                             clus
vv                                                            LRRC4C WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              156
D16V6, multiclass
    clus
vv   LRRC4C MUTATED LRRC4C WILD-TYPE
  T1              3               33
  T2              8              108
  T3              3               11
  T4              3                9
D16V7, multiclass
    clus
vv   LRRC4C MUTATED LRRC4C WILD-TYPE
  N0             14              103
  N1              2               37
  N2              1               16
  N3              0                5
D16V8, multiclass
    clus
vv   LRRC4C MUTATED LRRC4C WILD-TYPE
  M0             13              152
  M1              0                3
  MX              2                4
D16V9, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  I                  11               86
  II                  3               35
  III+IV              3               38
D16V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC4C MUTATED      0   17
  LRRC4C WILD-TYPE    4  157
     clus
vv    LRRC4C MUTATED LRRC4C WILD-TYPE
  NO               0                4
  YES             17              157
D16V11, continuous
D16V12, continuous
D16V13, multiclass
                                             clus
vv                                            LRRC4C MUTATED LRRC4C WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      0                8
D16V14, continuous

Clustering(17) Variable = ZBBX MUTATION ANALYSIS
D17V1, survival
                sevent
clus2             0  1
  ZBBX MUTATED    9  8
  ZBBX WILD-TYPE 88 62
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            150 
  ZBBX MUTATED ZBBX WILD-TYPE 
             8             62 
$`ZBBX MUTATED`
TCGA-18-5592 TCGA-21-1076 TCGA-21-5784 TCGA-22-1012 TCGA-22-4613 TCGA-22-5473 
        3.02        60.89        29.85        14.10        11.77        63.52 
TCGA-22-5492 TCGA-33-4586 TCGA-34-5231 TCGA-34-5236 TCGA-37-4141 TCGA-43-6143 
       16.60        14.07        50.24         9.04         0.39         7.00 
TCGA-60-2715 TCGA-60-2719 TCGA-66-2757 TCGA-66-2773 TCGA-66-2787 
       35.34        30.61         0.99         3.02        40.01 

$`ZBBX WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 
       46.88        34.78        15.55         9.30        31.63        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 
       10.82         7.33         4.31         1.74        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       31.69        64.90        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 
       11.74        30.08        62.86        56.32        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 
       97.94        43.10       173.79       103.53       141.34        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
        2.63        61.61        32.84        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         6.81         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         8.48         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       47.87         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  ZBBX MUTATED ZBBX WILD-TYPE 
          0.39           0.10 
  ZBBX MUTATED ZBBX WILD-TYPE 
         63.52         173.79 
  ZBBX MUTATED ZBBX WILD-TYPE 
         14.10          18.46 
[1] "0.4 - 63.5 (14.1)"  "0.1 - 173.8 (18.5)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZBBX WILD-TYPE"   "ZBBX MUTATED"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZBBX WILD-TYPE"   "ZBBX MUTATED"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZBBX WILD-TYPE"   "ZBBX MUTATED"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
[1] "hr=" "1.3"
D17V2, continuous
D17V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      8    9
  ZBBX WILD-TYPE   39  122
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  FEMALE            8             39
  MALE              9            122
D17V4, continuous
D17V5, multiclass
                                                             clus
vv                                                            ZBBX MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           16
                                                             clus
vv                                                            ZBBX WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            156
D17V6, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  T1            7             29
  T2            7            109
  T3            3             11
  T4            0             12
D17V7, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  N0           15            102
  N1            0             39
  N2            2             15
  N3            0              5
D17V8, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  M0           17            148
  M1            0              3
  MX            0              6
D17V9, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  I                13             84
  II                2             36
  III+IV            2             39
D17V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      0   17
  ZBBX WILD-TYPE    4  157
     clus
vv    ZBBX MUTATED ZBBX WILD-TYPE
  NO             0              4
  YES           17            157
D17V11, continuous
D17V12, continuous
D17V13, multiclass
                                             clus
vv                                            ZBBX MUTATED ZBBX WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            8             86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5             38
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    2              6
D17V14, continuous

Clustering(18) Variable = CRB1 MUTATION ANALYSIS
D18V1, survival
                sevent
clus2             0  1
  CRB1 MUTATED   12 10
  CRB1 WILD-TYPE 85 60
  CRB1 MUTATED CRB1 WILD-TYPE 
            22            145 
  CRB1 MUTATED CRB1 WILD-TYPE 
            10             60 
$`CRB1 MUTATED`
TCGA-18-3409 TCGA-18-5592 TCGA-21-1071 TCGA-21-5784 TCGA-22-1002 TCGA-22-4599 
       79.46         3.02        46.88        29.85         4.31        38.17 
TCGA-22-4613 TCGA-22-5480 TCGA-22-5485 TCGA-33-4566 TCGA-33-4586 TCGA-34-5927 
       11.77        71.34        30.08       173.79        14.07        22.95 
TCGA-37-5819 TCGA-39-5031 TCGA-43-6770 TCGA-60-2698 TCGA-60-2710 TCGA-66-2756 
        3.39        27.35         2.79        10.22        55.40         0.99 
TCGA-66-2763 TCGA-66-2788 TCGA-66-2791 TCGA-66-2800 
        0.99        22.98         5.03        49.05 

$`CRB1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 
        6.15         2.79        90.51        27.16       115.59        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 
       34.78        15.55         9.30        31.63        21.57        10.82 
TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        7.33         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       24.13        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5489 
       63.52        14.60        44.22         0.79        11.74        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 
       70.03        60.76         1.71        24.33         1.94        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         6.02         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 
        2.04         1.02        21.70        68.45        49.48        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-85-6560 
        4.04        30.02        10.06        54.08         4.01         0.36 
TCGA-85-6561 
        0.79 

  CRB1 MUTATED CRB1 WILD-TYPE 
          0.99           0.10 
  CRB1 MUTATED CRB1 WILD-TYPE 
        173.79         141.34 
  CRB1 MUTATED CRB1 WILD-TYPE 
        22.965         16.960 
[1] "1.0 - 173.8 (23.0)" "0.1 - 141.3 (17.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
[1] "hr=" "1.2"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRB1 MUTATED     10   13
  CRB1 WILD-TYPE   37  118
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  FEMALE           10             37
  MALE             13            118
D18V4, continuous
D18V5, multiclass
                                                             clus
vv                                                            CRB1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           22
                                                             clus
vv                                                            CRB1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            150
D18V6, multiclass
    clus
vv   CRB1 MUTATED CRB1 WILD-TYPE
  T1            8             28
  T2           12            104
  T3            1             13
  T4            2             10
D18V7, multiclass
    clus
vv   CRB1 MUTATED CRB1 WILD-TYPE
  N0           18             99
  N1            2             37
  N2            2             15
  N3            1              4
D18V8, multiclass
    clus
vv   CRB1 MUTATED CRB1 WILD-TYPE
  M0           22            143
  M1            0              3
  MX            1              5
D18V9, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  I                13             84
  II                4             34
  III+IV            5             36
D18V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRB1 MUTATED      0   23
  CRB1 WILD-TYPE    4  151
     clus
vv    CRB1 MUTATED CRB1 WILD-TYPE
  NO             0              4
  YES           23            151
D18V11, continuous
D18V12, continuous
D18V13, multiclass
                                             clus
vv                                            CRB1 MUTATED CRB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           12             82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4             39
  CURRENT SMOKER                                         6             22
  LIFELONG NON-SMOKER                                    0              8
D18V14, continuous

Clustering(19) Variable = CYP11B1 MUTATION ANALYSIS
D19V1, survival
                   sevent
clus2                0  1
  CYP11B1 MUTATED    4 11
  CYP11B1 WILD-TYPE 93 59
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               152 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               11                59 
$`CYP11B1 MUTATED`
TCGA-21-1077 TCGA-21-5787 TCGA-22-1016 TCGA-22-4595 TCGA-22-5491 TCGA-33-4566 
       34.78        10.82        27.02        24.13        56.32       173.79 
TCGA-43-6771 TCGA-51-4079 TCGA-51-4080 TCGA-60-2719 TCGA-60-2726 TCGA-66-2766 
        5.42         0.39         0.39        30.61        11.77         1.02 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2789 
       24.95         1.94         4.04 

$`CYP11B1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
      115.59        46.88        60.89        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
        0.79        71.34        11.74        30.08        62.86        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        9.96         0.95         0.59         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 
       55.40        29.19         9.01        47.87        35.34         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       26.07        24.10        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.99        20.98        25.02         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.03         3.98        12.00        25.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
             0.39              0.10 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
           173.79            141.34 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
            11.77             17.98 
[1] "0.4 - 173.8 (11.8)" "0.1 - 141.3 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
[1] "hr=" "2"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11B1 MUTATED      2   13
  CYP11B1 WILD-TYPE   45  118
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  FEMALE               2                45
  MALE                13               118
D19V4, continuous
D19V5, multiclass
                                                             clus
vv                                                            CYP11B1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              14
                                                             clus
vv                                                            CYP11B1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               158
D19V6, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  T1               3                33
  T2              10               106
  T3               1                13
  T4               1                11
D19V7, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  N0               7               110
  N1               3                36
  N2               3                14
  N3               2                 3
D19V8, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  M0              11               154
  M1               0                 3
  MX               1                 5
D19V9, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  I                    7                90
  II                   2                36
  III+IV               6                35
D19V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11B1 MUTATED      2   13
  CYP11B1 WILD-TYPE    2  161
     clus
vv    CYP11B1 MUTATED CYP11B1 WILD-TYPE
  NO                2                 2
  YES              13               161
D19V11, continuous
D19V12, continuous
D19V13, multiclass
                                             clus
vv                                            CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9                85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                40
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                 8
D19V14, continuous

Clustering(20) Variable = USP29 MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  USP29 MUTATED   10  6
  USP29 WILD-TYPE 87 64
  USP29 MUTATED USP29 WILD-TYPE 
             16             151 
  USP29 MUTATED USP29 WILD-TYPE 
              6              64 
$`USP29 MUTATED`
TCGA-18-3406 TCGA-22-5489 TCGA-33-4566 TCGA-34-2600 TCGA-39-5027 TCGA-39-5031 
       12.16        62.86       173.79        61.61        60.76        27.35 
TCGA-43-6143 TCGA-51-4079 TCGA-51-4081 TCGA-60-2708 TCGA-60-2721 TCGA-60-2725 
        7.00         0.39         2.07        68.45        26.07        23.64 
TCGA-66-2734 TCGA-66-2756 TCGA-66-2768 TCGA-66-2791 
       43.10         0.99         2.01         5.03 

$`USP29 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
        4.47        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         8.48         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 
        9.96         0.95         0.59         0.39        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        10.22        21.70        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 
       24.10        22.78         1.22        11.77        16.96        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         1.02         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  USP29 MUTATED USP29 WILD-TYPE 
           0.39            0.10 
  USP29 MUTATED USP29 WILD-TYPE 
         173.79          141.34 
  USP29 MUTATED USP29 WILD-TYPE 
         24.855          16.960 
[1] "0.4 - 173.8 (24.9)" "0.1 - 141.3 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
[1] "hr=" "1.6"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP29 MUTATED      6   11
  USP29 WILD-TYPE   41  120
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  FEMALE             6              41
  MALE              11             120
D20V4, continuous
D20V5, multiclass
                                                             clus
vv                                                            USP29 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            16
                                                             clus
vv                                                            USP29 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             156
D20V6, multiclass
    clus
vv   USP29 MUTATED USP29 WILD-TYPE
  T1             5              31
  T2            11             105
  T3             0              14
  T4             1              11
D20V7, multiclass
    clus
vv   USP29 MUTATED USP29 WILD-TYPE
  N0            13             104
  N1             3              36
  N2             0              17
  N3             1               4
D20V8, multiclass
    clus
vv   USP29 MUTATED USP29 WILD-TYPE
  M0            16             149
  M1             0               3
  MX             0               6
D20V9, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  I                 12              85
  II                 3              35
  III+IV             2              39
D20V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP29 MUTATED      0   17
  USP29 WILD-TYPE    4  157
     clus
vv    USP29 MUTATED USP29 WILD-TYPE
  NO              0               4
  YES            17             157
D20V11, continuous
D20V12, continuous
D20V13, multiclass
                                             clus
vv                                            USP29 MUTATED USP29 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D20V14, continuous

Clustering(21) Variable = OR6F1 MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  OR6F1 MUTATED    5  6
  OR6F1 WILD-TYPE 92 64
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             11             156 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
              6              64 
$`OR6F1 MUTATED`
TCGA-18-5592 TCGA-21-5782 TCGA-33-4586 TCGA-34-5232 TCGA-37-4141 TCGA-56-1622 
        3.02        31.63        14.07        51.78         0.39        28.93 
TCGA-60-2698 TCGA-66-2727 TCGA-66-2785 TCGA-66-2789 TCGA-85-6561 
       10.22        16.96         1.94         4.04         0.79 

$`OR6F1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53       141.34        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        50.24        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         6.81         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        0.39         2.07         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
        1.22        23.64        11.77        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 
       12.00        24.95        25.97        40.01        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 

  OR6F1 MUTATED OR6F1 WILD-TYPE 
           0.39            0.10 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
          51.78          173.79 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
          10.22           18.92 
[1] "0.4 - 51.8 (10.2)"  "0.1 - 173.8 (18.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
[1] "hr=" "2.3"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6F1 MUTATED      4    9
  OR6F1 WILD-TYPE   43  122
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  FEMALE             4              43
  MALE               9             122
D21V4, continuous
[1] "Remove cluster labels:" "OR6F1 MUTATED"         
clus
  OR6F1 MUTATED OR6F1 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
D21V5, multiclass
                                                             clus
vv                                                            OR6F1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            OR6F1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
D21V6, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  T1             4              32
  T2             7             109
  T3             1              13
  T4             1              11
D21V7, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  N0             9             108
  N1             2              37
  N2             1              16
  N3             1               4
D21V8, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  M0            13             152
  M1             0               3
  MX             0               6
D21V9, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  I                  6              91
  II                 5              33
  III+IV             2              39
D21V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6F1 MUTATED      0   13
  OR6F1 WILD-TYPE    4  161
     clus
vv    OR6F1 MUTATED OR6F1 WILD-TYPE
  NO              0               4
  YES            13             161
D21V11, continuous
D21V12, continuous
D21V13, multiclass
                                             clus
vv                                            OR6F1 MUTATED OR6F1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D21V14, continuous

Clustering(22) Variable = MAGEB2 MUTATION ANALYSIS
D22V1, survival
                  sevent
clus2               0  1
  MAGEB2 MUTATED    5  2
  MAGEB2 WILD-TYPE 92 68
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               7              160 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               2               68 
$`MAGEB2 MUTATED`
TCGA-33-4538 TCGA-34-5929 TCGA-56-6545 TCGA-60-2709 TCGA-66-2755 TCGA-66-2757 
       97.94         4.96         2.04        49.48         0.92         0.99 
TCGA-66-2781 
        3.98 

$`MAGEB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 
        0.10         1.02        10.22        21.70        68.45        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 
       16.96        43.10        21.07         0.99         2.01         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
            0.92             0.10 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
           97.94           173.79 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
            3.98            18.46 
[1] "0.9 - 97.9 (4.0)"   "0.1 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEB2 MUTATED      3    6
  MAGEB2 WILD-TYPE   44  125
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  FEMALE              3               44
  MALE                6              125
D22V4, continuous
D22V5, multiclass
                                                             clus
vv                                                            MAGEB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            MAGEB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
D22V6, multiclass
    clus
vv   MAGEB2 MUTATED MAGEB2 WILD-TYPE
  T1              1               35
  T2              7              109
  T3              0               14
  T4              1               11
D22V7, multiclass
    clus
vv   MAGEB2 MUTATED MAGEB2 WILD-TYPE
  N0              8              109
  N1              0               39
  N2              1               16
  N3              0                5
D22V8, multiclass
    clus
vv   MAGEB2 MUTATED MAGEB2 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              1                5
D22V9, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  I                   7               90
  II                  1               37
  III+IV              1               40
D22V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEB2 MUTATED      0    9
  MAGEB2 WILD-TYPE    4  165
     clus
vv    MAGEB2 MUTATED MAGEB2 WILD-TYPE
  NO               0                4
  YES              9              165
D22V11, continuous
D22V12, continuous
D22V13, multiclass
                                             clus
vv                                            MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D22V14, continuous

Clustering(23) Variable = OR2G6 MUTATION ANALYSIS
D23V1, survival
                 sevent
clus2              0  1
  OR2G6 MUTATED   11  3
  OR2G6 WILD-TYPE 86 67
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             14             153 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
              3              67 
$`OR2G6 MUTATED`
TCGA-18-3409 TCGA-33-4583 TCGA-34-2600 TCGA-37-3789 TCGA-37-4135 TCGA-39-5027 
       79.46       141.34        61.61         0.43         6.81        60.76 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-60-2698 TCGA-66-2759 TCGA-66-2771 
       18.84         8.48         7.00        10.22        25.02        19.00 
TCGA-66-2782 TCGA-85-6560 
       12.00         0.36 

$`OR2G6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       173.79       103.53        14.07        19.76 
TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        3.95         7.82         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        70.03         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
       11.57         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        23.01         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  OR2G6 MUTATED OR2G6 WILD-TYPE 
           0.36            0.10 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
         141.34          173.79 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
          15.42           17.88 
[1] "0.4 - 141.3 (15.4)" "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
[1] "hr=" "2.3"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G6 MUTATED      1   14
  OR2G6 WILD-TYPE   46  117
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  FEMALE             1              46
  MALE              14             117
D23V4, continuous
[1] "Remove cluster labels:" "OR2G6 MUTATED"         
clus
  OR2G6 MUTATED OR2G6 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-5819 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
D23V5, multiclass
                                                             clus
vv                                                            OR2G6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            OR2G6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
D23V6, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  T1             4              32
  T2             9             107
  T3             1              13
  T4             1              11
D23V7, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  N0            10             107
  N1             4              35
  N2             1              16
  N3             0               5
D23V8, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  M0            14             151
  M1             0               3
  MX             0               6
D23V9, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  I                  6              91
  II                 5              33
  III+IV             3              38
D23V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G6 MUTATED      0   15
  OR2G6 WILD-TYPE    4  159
     clus
vv    OR2G6 MUTATED OR2G6 WILD-TYPE
  NO              0               4
  YES            15             159
D23V11, continuous
D23V12, continuous
D23V13, multiclass
                                             clus
vv                                            OR2G6 MUTATED OR2G6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            10              84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              39
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D23V14, continuous

Clustering(24) Variable = CFHR4 MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  CFHR4 MUTATED    6  4
  CFHR4 WILD-TYPE 91 66
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             157 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
              4              66 
$`CFHR4 MUTATED`
TCGA-22-4613 TCGA-33-4538 TCGA-39-5027 TCGA-46-3768 TCGA-60-2720 TCGA-60-2724 
       11.77        97.94        60.76         9.96         3.16         1.22 
TCGA-66-2734 TCGA-66-2763 TCGA-66-2777 TCGA-66-2782 
       43.10         0.99         2.01        12.00 

$`CFHR4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 
        7.00         6.02         2.79         5.42         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 
       29.19         9.01        47.87        35.34        30.61        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 
       24.10        22.78        23.64        11.77        16.96        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
       19.00         3.02        19.00        12.03         3.98        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  CFHR4 MUTATED CFHR4 WILD-TYPE 
           0.99            0.10 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
          97.94          173.79 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
         10.865          18.840 
[1] "1.0 - 97.9 (10.9)"  "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" "CFHR4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" "CFHR4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" "CFHR4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
[1] "hr=" "1.1"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR4 MUTATED      4    6
  CFHR4 WILD-TYPE   43  125
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  FEMALE             4              43
  MALE               6             125
D24V4, continuous
[1] "Remove cluster labels:" "CFHR4 MUTATED"         
clus
  CFHR4 MUTATED CFHR4 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
D24V5, multiclass
                                                             clus
vv                                                            CFHR4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            CFHR4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
D24V6, multiclass
    clus
vv   CFHR4 MUTATED CFHR4 WILD-TYPE
  T1             1              35
  T2             6             110
  T3             3              11
  T4             0              12
D24V7, multiclass
    clus
vv   CFHR4 MUTATED CFHR4 WILD-TYPE
  N0             7             110
  N1             2              37
  N2             1              16
  N3             0               5
D24V8, multiclass
    clus
vv   CFHR4 MUTATED CFHR4 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
D24V9, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  I                  6              91
  II                 1              37
  III+IV             3              38
D24V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR4 MUTATED      0   10
  CFHR4 WILD-TYPE    4  164
     clus
vv    CFHR4 MUTATED CFHR4 WILD-TYPE
  NO              0               4
  YES            10             164
D24V11, continuous
D24V12, continuous
D24V13, multiclass
                                             clus
vv                                            CFHR4 MUTATED CFHR4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D24V14, continuous

Clustering(25) Variable = ESRRG MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  ESRRG MUTATED    8  4
  ESRRG WILD-TYPE 89 66
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             155 
  ESRRG MUTATED ESRRG WILD-TYPE 
              4              66 
$`ESRRG MUTATED`
TCGA-21-5786 TCGA-22-5473 TCGA-33-4566 TCGA-37-3789 TCGA-37-4133 TCGA-39-5029 
       21.57        63.52       173.79         0.43         7.82        24.33 
TCGA-43-5668 TCGA-60-2709 TCGA-66-2755 TCGA-66-2771 TCGA-66-2781 TCGA-66-2782 
        8.48        49.48         0.92        19.00         3.98        12.00 

$`ESRRG WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        3.95         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       68.45        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 
        2.01         1.02         2.01         2.01        23.01         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
        2.01        19.00        12.03        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  ESRRG MUTATED ESRRG WILD-TYPE 
           0.43            0.10 
  ESRRG MUTATED ESRRG WILD-TYPE 
         173.79          141.34 
  ESRRG MUTATED ESRRG WILD-TYPE 
          15.50           17.88 
[1] "0.4 - 173.8 (15.5)" "0.1 - 141.3 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ESRRG MUTATED"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ESRRG MUTATED"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ESRRG MUTATED"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
[1] "hr=" "1.8"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESRRG MUTATED      0   12
  ESRRG WILD-TYPE   47  119
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  FEMALE             0              47
  MALE              12             119
D25V4, continuous
[1] "Remove cluster labels:" "ESRRG MUTATED"         
clus
  ESRRG MUTATED ESRRG WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
D25V5, multiclass
                                                             clus
vv                                                            ESRRG MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            ESRRG WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
D25V6, multiclass
    clus
vv   ESRRG MUTATED ESRRG WILD-TYPE
  T1             2              34
  T2             7             109
  T3             2              12
  T4             1              11
D25V7, multiclass
    clus
vv   ESRRG MUTATED ESRRG WILD-TYPE
  N0             9             108
  N1             2              37
  N2             1              16
  N3             0               5
D25V8, multiclass
    clus
vv   ESRRG MUTATED ESRRG WILD-TYPE
  M0            10             155
  M1             0               3
  MX             1               5
D25V9, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  I                  7              90
  II                 3              35
  III+IV             2              39
D25V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESRRG MUTATED      0   12
  ESRRG WILD-TYPE    4  162
     clus
vv    ESRRG MUTATED ESRRG WILD-TYPE
  NO              0               4
  YES            12             162
D25V11, continuous
D25V12, continuous
D25V13, multiclass
                                             clus
vv                                            ESRRG MUTATED ESRRG WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D25V14, continuous

Clustering(26) Variable = OR51B2 MUTATION ANALYSIS
D26V1, survival
                  sevent
clus2               0  1
  OR51B2 MUTATED    6  4
  OR51B2 WILD-TYPE 91 66
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              157 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
               4               66 
$`OR51B2 MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-21-1077 TCGA-22-1016 TCGA-22-5482 TCGA-33-4532 
       12.16        79.46        34.78        27.02        11.74        82.98 
TCGA-60-2713 TCGA-66-2757 TCGA-66-2766 TCGA-66-2785 
       47.87         0.99         1.02         1.94 

$`OR51B2 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 
       10.82         7.33         4.31         1.74        14.10        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
        0.79        71.34        30.08        62.86        56.32        16.60 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
       24.95        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  OR51B2 MUTATED OR51B2 WILD-TYPE 
            0.99             0.10 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
           82.98           173.79 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
           19.59            17.88 
[1] "1.0 - 83.0 (19.6)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
[1] "hr=" "1.2"
D26V2, continuous
D26V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51B2 MUTATED      1    9
  OR51B2 WILD-TYPE   46  122
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  FEMALE              1               46
  MALE                9              122
D26V4, continuous
[1] "Remove cluster labels:" "OR51B2 MUTATED"        
clus
  OR51B2 MUTATED OR51B2 WILD-TYPE 
               2               34 
      TCGA-18-3407       TCGA-18-3410       TCGA-18-3414       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5787       TCGA-22-4591       TCGA-22-4593 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5485 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
D26V5, multiclass
                                                             clus
vv                                                            OR51B2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            OR51B2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
D26V6, multiclass
    clus
vv   OR51B2 MUTATED OR51B2 WILD-TYPE
  T1              3               33
  T2              7              109
  T3              0               14
  T4              0               12
D26V7, multiclass
    clus
vv   OR51B2 MUTATED OR51B2 WILD-TYPE
  N0              8              109
  N1              1               38
  N2              1               16
  N3              0                5
D26V8, multiclass
    clus
vv   OR51B2 MUTATED OR51B2 WILD-TYPE
  M0             10              155
  M1              0                3
  MX              0                6
D26V9, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  I                   7               90
  II                  1               37
  III+IV              1               40
D26V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51B2 MUTATED      0   10
  OR51B2 WILD-TYPE    4  164
     clus
vv    OR51B2 MUTATED OR51B2 WILD-TYPE
  NO               0                4
  YES             10              164
D26V11, continuous
D26V12, continuous
D26V13, multiclass
                                             clus
vv                                            OR51B2 MUTATED OR51B2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D26V14, continuous

Clustering(27) Variable = REG3G MUTATION ANALYSIS
D27V1, survival
                 sevent
clus2              0  1
  REG3G MUTATED    8  0
  REG3G WILD-TYPE 89 70
  REG3G MUTATED REG3G WILD-TYPE 
              8             159 
  REG3G MUTATED REG3G WILD-TYPE 
              0              70 
$`REG3G MUTATED`
TCGA-18-5592 TCGA-22-5471 TCGA-34-5231 TCGA-37-4141 TCGA-37-5819 TCGA-43-6143 
        3.02        31.69        50.24         0.39         3.39         7.00 
TCGA-66-2792 TCGA-85-6561 
       30.02         0.79 

$`REG3G WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        32.84        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-39-5016 TCGA-39-5019 
        3.95         0.43         7.82         6.81        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         8.48         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04         5.03        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  REG3G MUTATED REG3G WILD-TYPE 
           0.39            0.10 
  REG3G MUTATED REG3G WILD-TYPE 
          50.24          173.79 
  REG3G MUTATED REG3G WILD-TYPE 
          5.195          18.080 
[1] "0.4 - 50.2 (5.2)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
[1] "hr="     "2.6e+07"
D27V2, continuous
D27V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3G MUTATED      1    7
  REG3G WILD-TYPE   46  124
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  FEMALE             1              46
  MALE               7             124
D27V4, continuous
[1] "Remove cluster labels:" "REG3G MUTATED"         
clus
  REG3G MUTATED REG3G WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-4135 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
D27V5, multiclass
                                                             clus
vv                                                            REG3G MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            REG3G WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D27V6, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  T1             2              34
  T2             5             111
  T3             1              13
  T4             0              12
D27V7, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
D27V8, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
D27V9, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  I                  4              93
  II                 3              35
  III+IV             1              40
D27V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3G MUTATED      1    7
  REG3G WILD-TYPE    3  167
     clus
vv    REG3G MUTATED REG3G WILD-TYPE
  NO              1               3
  YES             7             167
D27V11, continuous
D27V12, continuous
D27V13, multiclass
                                             clus
vv                                            REG3G MUTATED REG3G WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     2               6
D27V14, continuous

Clustering(28) Variable = OR2T33 MUTATION ANALYSIS
D28V1, survival
                  sevent
clus2               0  1
  OR2T33 MUTATED    7  3
  OR2T33 WILD-TYPE 90 67
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              10              157 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               3               67 
$`OR2T33 MUTATED`
TCGA-18-3409 TCGA-34-2600 TCGA-37-3783 TCGA-43-2578 TCGA-43-5668 TCGA-46-3768 
       79.46        61.61         3.95        18.08         8.48         9.96 
TCGA-51-4080 TCGA-60-2713 TCGA-66-2742 TCGA-85-6560 
        0.39        47.87        21.07         0.36 

$`OR2T33 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       19.76         2.63        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 
        0.79        17.88        11.57        18.84         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        2.79         5.42         0.95         0.59         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 
       68.45        49.48        55.40        29.19         9.01        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 
       23.64        11.77        16.96        43.10         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6561 
        0.79 

  OR2T33 MUTATED OR2T33 WILD-TYPE 
            0.36             0.10 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
           79.46           173.79 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
           14.02            17.88 
[1] "0.4 - 79.5 (14.0)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
[1] "hr=" "1.3"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T33 MUTATED      2   11
  OR2T33 WILD-TYPE   45  120
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  FEMALE              2               45
  MALE               11              120
D28V4, continuous
D28V5, multiclass
                                                             clus
vv                                                            OR2T33 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             11
                                                             clus
vv                                                            OR2T33 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              161
D28V6, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  T1              5               31
  T2              5              111
  T3              2               12
  T4              1               11
D28V7, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  N0              7              110
  N1              5               34
  N2              1               16
  N3              0                5
D28V8, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  M0             11              154
  M1              1                2
  MX              0                6
D28V9, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  I                   5               92
  II                  2               36
  III+IV              5               36
D28V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T33 MUTATED      0   13
  OR2T33 WILD-TYPE    4  161
     clus
vv    OR2T33 MUTATED OR2T33 WILD-TYPE
  NO               0                4
  YES             13              161
D28V11, continuous
D28V12, continuous
D28V13, multiclass
                                             clus
vv                                            OR2T33 MUTATED OR2T33 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D28V14, continuous

Clustering(29) Variable = PNLIPRP3 MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                 0  1
  PNLIPRP3 MUTATED    5  5
  PNLIPRP3 WILD-TYPE 92 65
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                10                157 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                 5                 65 
$`PNLIPRP3 MUTATED`
TCGA-21-5784 TCGA-21-5787 TCGA-22-4601 TCGA-22-5473 TCGA-33-6737 TCGA-34-5928 
       29.85        10.82        34.75        63.52        19.76         5.52 
TCGA-37-4141 TCGA-60-2722 TCGA-66-2759 TCGA-66-2782 
        0.39        24.10        25.02        12.00 

$`PNLIPRP3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       31.63        21.57         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 
       27.02        20.45        35.08        24.13        38.17        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        14.07         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
        2.01         0.92         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
        3.02         2.01        19.00        12.03         3.98        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
              0.39               0.10 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
             63.52             173.79 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
             21.93              16.96 
[1] "0.4 - 63.5 (21.9)"  "0.1 - 173.8 (17.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
  "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
  "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
  "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
[1] "hr=" "1.3"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PNLIPRP3 MUTATED      4    7
  PNLIPRP3 WILD-TYPE   43  124
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  FEMALE                4                 43
  MALE                  7                124
D29V4, continuous
D29V5, multiclass
                                                             clus
vv                                                            PNLIPRP3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               11
                                                             clus
vv                                                            PNLIPRP3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                       1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                161
D29V6, multiclass
    clus
vv   PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  T1                1                 35
  T2                6                110
  T3                2                 12
  T4                2                 10
D29V7, multiclass
    clus
vv   PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  N0                6                111
  N1                2                 37
  N2                3                 14
  N3                0                  5
D29V8, multiclass
    clus
vv   PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  M0               11                154
  M1                0                  3
  MX                0                  6
D29V9, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  I                     3                 94
  II                    4                 34
  III+IV                4                 37
D29V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PNLIPRP3 MUTATED      1   10
  PNLIPRP3 WILD-TYPE    3  164
     clus
vv    PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  NO                 1                  3
  YES               10                164
D29V11, continuous
D29V12, continuous
D29V13, multiclass
                                             clus
vv                                            PNLIPRP3 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                5
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            PNLIPRP3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      40
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                          7
D29V14, continuous

Clustering(30) Variable = SPHKAP MUTATION ANALYSIS
D30V1, survival
                  sevent
clus2               0  1
  SPHKAP MUTATED   13 11
  SPHKAP WILD-TYPE 84 59
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              24              143 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              11               59 
$`SPHKAP MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 TCGA-18-3416 TCGA-21-1071 TCGA-21-1077 
       79.46        46.52        13.02        28.34        46.88        34.78 
TCGA-21-5782 TCGA-21-5784 TCGA-22-1016 TCGA-22-4613 TCGA-22-5473 TCGA-33-4566 
       31.63        29.85        27.02        11.77        63.52       173.79 
TCGA-33-4583 TCGA-34-5928 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
      141.34         5.52         6.81         0.39        74.07        44.71 
TCGA-51-4080 TCGA-60-2722 TCGA-66-2757 TCGA-66-2773 TCGA-66-2785 TCGA-66-2791 
        0.39        24.10         0.99         3.02         1.94         5.03 

$`SPHKAP WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07         4.80        11.34        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 
        3.02        27.16       115.59        60.89        15.55         9.30 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       19.30        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 
       82.98       114.05        97.94        43.10       103.53        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-5819 TCGA-39-5021 
        4.96         3.95         0.43         7.82         3.39        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.42         9.96         0.95         0.59         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01        22.98         4.04        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  SPHKAP MUTATED SPHKAP WILD-TYPE 
            0.39             0.10 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
          173.79           115.59 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
           27.68            16.60 
[1] "0.4 - 173.8 (27.7)" "0.1 - 115.6 (16.6)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
[1] "hr=" "1.3"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPHKAP MUTATED      7   18
  SPHKAP WILD-TYPE   40  113
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  FEMALE              7               40
  MALE               18              113
D30V4, continuous
D30V5, multiclass
                                                             clus
vv                                                            SPHKAP MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             22
                                                             clus
vv                                                            SPHKAP WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              150
D30V6, multiclass
    clus
vv   SPHKAP MUTATED SPHKAP WILD-TYPE
  T1              5               31
  T2             17               99
  T3              1               13
  T4              2               10
D30V7, multiclass
    clus
vv   SPHKAP MUTATED SPHKAP WILD-TYPE
  N0             16              101
  N1              7               32
  N2              1               16
  N3              1                4
D30V8, multiclass
    clus
vv   SPHKAP MUTATED SPHKAP WILD-TYPE
  M0             23              142
  M1              1                2
  MX              0                6
D30V9, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  I                  13               84
  II                  6               32
  III+IV              5               36
D30V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPHKAP MUTATED      0   25
  SPHKAP WILD-TYPE    4  149
     clus
vv    SPHKAP MUTATED SPHKAP WILD-TYPE
  NO               0                4
  YES             25              149
D30V11, continuous
D30V12, continuous
D30V13, multiclass
                                             clus
vv                                            SPHKAP MUTATED SPHKAP WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   9               34
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      1                7
D30V14, continuous

Clustering(31) Variable = SLC13A1 MUTATION ANALYSIS
D31V1, survival
                   sevent
clus2                0  1
  SLC13A1 MUTATED    8  4
  SLC13A1 WILD-TYPE 89 66
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               155 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
                4                66 
$`SLC13A1 MUTATED`
TCGA-18-3415 TCGA-18-4083 TCGA-22-5471 TCGA-39-5027 TCGA-39-5039 TCGA-43-6647 
       59.51         6.15        31.69        60.76        17.88         6.02 
TCGA-60-2698 TCGA-60-2719 TCGA-60-2726 TCGA-66-2742 TCGA-66-2767 TCGA-66-2787 
       10.22        30.61        11.77        21.07         2.01        40.01 

$`SLC13A1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        11.77        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 
       18.08        11.57        18.84         8.48         7.00         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        2.07        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       35.34         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       23.64        16.96        43.10         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
             2.01              0.10 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
            60.76            173.79 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
           19.475            16.960 
[1] "2.0 - 60.8 (19.5)"  "0.1 - 173.8 (17.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
[1] "hr=" "1.2"
D31V2, continuous
D31V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC13A1 MUTATED      2   10
  SLC13A1 WILD-TYPE   45  121
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  FEMALE               2                45
  MALE                10               121
D31V4, continuous
[1] "Remove cluster labels:" "SLC13A1 MUTATED"       
clus
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4133        TCGA-37-4135 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
D31V5, multiclass
                                                             clus
vv                                                            SLC13A1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              12
                                                             clus
vv                                                            SLC13A1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               160
D31V6, multiclass
    clus
vv   SLC13A1 MUTATED SLC13A1 WILD-TYPE
  T1               2                34
  T2              10               106
  T3               0                14
  T4               0                12
D31V7, multiclass
    clus
vv   SLC13A1 MUTATED SLC13A1 WILD-TYPE
  N0               6               111
  N1               5                34
  N2               0                17
  N3               1                 4
D31V8, multiclass
    clus
vv   SLC13A1 MUTATED SLC13A1 WILD-TYPE
  M0              10               155
  M1               1                 2
  MX               1                 5
D31V9, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  I                    5                92
  II                   5                33
  III+IV               2                39
D31V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC13A1 MUTATED      1   11
  SLC13A1 WILD-TYPE    3  163
     clus
vv    SLC13A1 MUTATED SLC13A1 WILD-TYPE
  NO                1                 3
  YES              11               163
D31V11, continuous
D31V12, continuous
D31V13, multiclass
                                             clus
vv                                            SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                39
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D31V14, continuous

Clustering(32) Variable = CPS1 MUTATION ANALYSIS
D32V1, survival
                sevent
clus2             0  1
  CPS1 MUTATED   16  8
  CPS1 WILD-TYPE 81 62
  CPS1 MUTATED CPS1 WILD-TYPE 
            24            143 
  CPS1 MUTATED CPS1 WILD-TYPE 
             8             62 
$`CPS1 MUTATED`
TCGA-18-3409 TCGA-18-3415 TCGA-18-3419 TCGA-18-5592 TCGA-21-1070 TCGA-21-1076 
       79.46        59.51         1.61         3.02       115.59        60.89 
TCGA-21-1077 TCGA-21-1081 TCGA-21-5784 TCGA-22-4591 TCGA-22-5482 TCGA-34-5236 
       34.78         9.30        29.85        20.45        11.74         9.04 
TCGA-39-5016 TCGA-46-6026 TCGA-51-4080 TCGA-60-2698 TCGA-60-2720 TCGA-60-2722 
       74.07         0.59         0.39        10.22         3.16        24.10 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 TCGA-85-6560 
        0.99        25.02         1.94        25.97         4.04         0.36 

$`CPS1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        28.34        24.92        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1071 TCGA-21-1078 TCGA-21-5782 TCGA-21-5786 
       90.51        27.16        46.88        15.55        31.63        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
        0.79        71.34        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       50.24        51.78        32.68        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39         3.39        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        9.96         0.95         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 
       29.19         9.01        47.87        35.34        30.61        26.07 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 
       12.00        24.95        40.01        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.79 

  CPS1 MUTATED CPS1 WILD-TYPE 
          0.36           0.10 
  CPS1 MUTATED CPS1 WILD-TYPE 
        115.59         173.79 
  CPS1 MUTATED CPS1 WILD-TYPE 
         10.98          18.08 
[1] "0.4 - 115.6 (11.0)" "0.1 - 173.8 (18.1)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "CPS1 MUTATED"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "CPS1 MUTATED"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "CPS1 MUTATED"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
[1] "hr=" "1.2"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CPS1 MUTATED      6   18
  CPS1 WILD-TYPE   41  113
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  FEMALE            6             41
  MALE             18            113
D32V4, continuous
D32V5, multiclass
                                                             clus
vv                                                            CPS1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           21
                                                             clus
vv                                                            CPS1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            151
D32V6, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  T1            4             32
  T2           15            101
  T3            4             10
  T4            1             11
D32V7, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  N0           12            105
  N1            9             30
  N2            2             15
  N3            1              4
D32V8, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  M0           23            142
  M1            0              3
  MX            0              6
D32V9, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  I                 8             89
  II                9             29
  III+IV            6             35
D32V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CPS1 MUTATED      1   23
  CPS1 WILD-TYPE    3  151
     clus
vv    CPS1 MUTATED CPS1 WILD-TYPE
  NO             1              3
  YES           23            151
D32V11, continuous
D32V12, continuous
D32V13, multiclass
                                             clus
vv                                            CPS1 MUTATED CPS1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           16             78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5             38
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D32V14, continuous

Clustering(33) Variable = ASB5 MUTATION ANALYSIS
D33V1, survival
                sevent
clus2             0  1
  ASB5 MUTATED    6  3
  ASB5 WILD-TYPE 91 67
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            158 
  ASB5 MUTATED ASB5 WILD-TYPE 
             3             67 
$`ASB5 MUTATED`
TCGA-18-3409 TCGA-18-3412 TCGA-22-4613 TCGA-33-4533 TCGA-33-4538 TCGA-39-5016 
       79.46        11.34        11.77       114.05        97.94        74.07 
TCGA-66-2755 TCGA-66-2766 TCGA-66-2768 
        0.92         1.02         2.01 

$`ASB5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       56.32        16.60        82.98        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 
        7.82         6.81         0.39         3.39        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 
       25.02         0.99         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  ASB5 MUTATED ASB5 WILD-TYPE 
          0.92           0.10 
  ASB5 MUTATED ASB5 WILD-TYPE 
        114.05         173.79 
  ASB5 MUTATED ASB5 WILD-TYPE 
         11.77          17.98 
[1] "0.9 - 114.0 (11.8)" "0.1 - 173.8 (18.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED"   "ASB5 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED"   "ASB5 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED"   "ASB5 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
[1] "hr=" "2.1"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      2    7
  ASB5 WILD-TYPE   45  124
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  FEMALE            2             45
  MALE              7            124
D33V4, continuous
[1] "Remove cluster labels:" "ASB5 MUTATED"          
clus
  ASB5 MUTATED ASB5 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
D33V5, multiclass
                                                             clus
vv                                                            ASB5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            ASB5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
D33V6, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  T1            2             34
  T2            7            109
  T3            0             14
  T4            0             12
D33V7, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  N0            5            112
  N1            2             37
  N2            2             15
  N3            0              5
D33V8, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  M0            9            156
  M1            0              3
  MX            0              6
D33V9, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  I                 4             93
  II                2             36
  III+IV            2             39
D33V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      0    9
  ASB5 WILD-TYPE    4  165
     clus
vv    ASB5 MUTATED ASB5 WILD-TYPE
  NO             0              4
  YES            9            165
D33V11, continuous
D33V12, continuous
D33V13, multiclass
                                             clus
vv                                            ASB5 MUTATED ASB5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4             39
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    1              7
D33V14, continuous

Clustering(34) Variable = TGIF2LX MUTATION ANALYSIS
D34V1, survival
                   sevent
clus2                0  1
  TGIF2LX MUTATED    4  4
  TGIF2LX WILD-TYPE 93 66
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                8               159 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                4                66 
$`TGIF2LX MUTATED`
TCGA-22-1016 TCGA-22-4601 TCGA-22-4613 TCGA-22-5471 TCGA-22-5480 TCGA-34-5231 
       27.02        34.75        11.77        31.69        71.34        50.24 
TCGA-37-3789 TCGA-60-2720 
        0.43         3.16 

$`TGIF2LX WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        1.74        14.10        20.45        35.08        24.13        38.17 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       13.12        19.30        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
        0.79        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 
       22.95         5.52         4.96         3.95         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
             0.43              0.10 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
            71.34            173.79 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
           29.355            16.960 
[1] "0.4 - 71.3 (29.4)"  "0.1 - 173.8 (17.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "TGIF2LX MUTATED"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "TGIF2LX MUTATED"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "TGIF2LX MUTATED"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
[1] "hr=" "1.1"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TGIF2LX MUTATED      4    4
  TGIF2LX WILD-TYPE   43  127
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  FEMALE               4                43
  MALE                 4               127
D34V4, continuous
D34V5, multiclass
                                                             clus
vv                                                            TGIF2LX MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               8
                                                             clus
vv                                                            TGIF2LX WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               164
D34V6, multiclass
    clus
vv   TGIF2LX MUTATED TGIF2LX WILD-TYPE
  T1               3                33
  T2               4               112
  T3               0                14
  T4               1                11
D34V7, multiclass
    clus
vv   TGIF2LX MUTATED TGIF2LX WILD-TYPE
  N0               8               109
  N1               0                39
  N2               0                17
  N3               0                 5
D34V8, multiclass
    clus
vv   TGIF2LX MUTATED TGIF2LX WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
D34V9, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  I                    7                90
  II                   0                38
  III+IV               1                40
D34V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TGIF2LX MUTATED      1    7
  TGIF2LX WILD-TYPE    3  167
     clus
vv    TGIF2LX MUTATED TGIF2LX WILD-TYPE
  NO                1                 3
  YES               7               167
D34V11, continuous
D34V12, continuous
D34V13, multiclass
                                             clus
vv                                            TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       2                 6
D34V14, continuous

Clustering(35) Variable = C20ORF26 MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                 0  1
  C20ORF26 MUTATED   12  5
  C20ORF26 WILD-TYPE 85 65
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                17                150 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                 5                 65 
$`C20ORF26 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-18-3421 TCGA-21-1070 TCGA-22-4591 TCGA-22-4595 
       79.46        28.34        43.76       115.59        20.45        24.13 
TCGA-22-5478 TCGA-22-5489 TCGA-39-5019 TCGA-39-5021 TCGA-43-2578 TCGA-60-2719 
        0.79        62.86        44.71        68.58        18.08        30.61 
TCGA-66-2754 TCGA-66-2758 TCGA-66-2766 TCGA-66-2785 TCGA-85-6560 
        2.01        20.98         1.02         1.94         0.36 

$`C20ORF26 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 
       13.02        59.51        24.92         1.61         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
       90.51         3.02        27.16        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
       15.55         9.30        31.63        29.85        21.57        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
        7.33         4.31         1.74        14.10        27.02        35.08 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 
       64.90        63.52        14.60        44.22        71.34        11.74 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
        3.39        74.07        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        35.34         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 
       21.07         0.99         0.92         0.99         0.99        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
       24.95        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       30.02        10.06        54.08         4.01        49.05         0.79 

  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
              0.36               0.10 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
            115.59             173.79 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
            24.130             15.565 
[1] "0.4 - 115.6 (24.1)" "0.1 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED"   "C20ORF26 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED"   "C20ORF26 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED"   "C20ORF26 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
[1] "hr=" "1.9"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C20ORF26 MUTATED      3   16
  C20ORF26 WILD-TYPE   44  115
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  FEMALE                3                 44
  MALE                 16                115
D35V4, continuous
D35V5, multiclass
                                                             clus
vv                                                            C20ORF26 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               18
                                                             clus
vv                                                            C20ORF26 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                       1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                154
D35V6, multiclass
    clus
vv   C20ORF26 MUTATED C20ORF26 WILD-TYPE
  T1                4                 32
  T2               11                105
  T3                3                 11
  T4                1                 11
D35V7, multiclass
    clus
vv   C20ORF26 MUTATED C20ORF26 WILD-TYPE
  N0               13                104
  N1                2                 37
  N2                4                 13
  N3                0                  5
D35V8, multiclass
    clus
vv   C20ORF26 MUTATED C20ORF26 WILD-TYPE
  M0               18                147
  M1                0                  3
  MX                0                  6
D35V9, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  I                     9                 88
  II                    3                 35
  III+IV                6                 35
D35V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C20ORF26 MUTATED      1   18
  C20ORF26 WILD-TYPE    3  156
     clus
vv    C20ORF26 MUTATED C20ORF26 WILD-TYPE
  NO                 1                  3
  YES               18                156
D35V11, continuous
D35V12, continuous
D35V13, multiclass
                                             clus
vv                                            C20ORF26 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               12
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            C20ORF26 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      38
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                          8
D35V14, continuous

Clustering(36) Variable = TRAT1 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  TRAT1 MUTATED    3  4
  TRAT1 WILD-TYPE 94 66
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              7             160 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              4              66 
$`TRAT1 MUTATED`
TCGA-18-4083 TCGA-21-1076 TCGA-22-4599 TCGA-22-5492 TCGA-66-2777 TCGA-66-2782 
        6.15        60.89        38.17        16.60         2.01        12.00 
TCGA-66-2785 
        1.94 

$`TRAT1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       46.88        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       27.02        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       19.00        12.03         3.98        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  TRAT1 MUTATED TRAT1 WILD-TYPE 
           1.94            0.10 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
          60.89          173.79 
  TRAT1 MUTATED TRAT1 WILD-TYPE 
          12.00           18.46 
[1] "1.9 - 60.9 (12.0)"  "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRAT1 MUTATED" "TRAT1 WILD-TYPE"   "TRAT1 MUTATED" "TRAT1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
[1] "hr=" "1.8"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRAT1 MUTATED      3    4
  TRAT1 WILD-TYPE   44  127
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  FEMALE             3              44
  MALE               4             127
D36V4, continuous
[1] "Remove cluster labels:" "TRAT1 MUTATED"         
clus
  TRAT1 MUTATED TRAT1 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4601      TCGA-22-4604 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-34-5234 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"TRAT1 WILD-TYPE" "TRAT1 WILD-TYPE" 
D36V5, multiclass
                                                             clus
vv                                                            TRAT1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            TRAT1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D36V6, multiclass
    clus
vv   TRAT1 MUTATED TRAT1 WILD-TYPE
  T1             0              36
  T2             6             110
  T3             1              13
  T4             0              12
D36V7, multiclass
    clus
vv   TRAT1 MUTATED TRAT1 WILD-TYPE
  N0             5             112
  N1             1              38
  N2             1              16
  N3             0               5
D36V8, multiclass
    clus
vv   TRAT1 MUTATED TRAT1 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
D36V9, multiclass
        clus
vv       TRAT1 MUTATED TRAT1 WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             1              40
D36V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRAT1 MUTATED      0    7
  TRAT1 WILD-TYPE    4  167
     clus
vv    TRAT1 MUTATED TRAT1 WILD-TYPE
  NO              0               4
  YES             7             167
D36V11, continuous
D36V12, continuous
D36V13, multiclass
                                             clus
vv                                            TRAT1 MUTATED TRAT1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              43
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D36V14, continuous

Clustering(37) Variable = CLVS2 MUTATION ANALYSIS
D37V1, survival
                 sevent
clus2              0  1
  CLVS2 MUTATED    5  4
  CLVS2 WILD-TYPE 92 66
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             158 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              4              66 
$`CLVS2 MUTATED`
TCGA-18-3416 TCGA-22-1002 TCGA-22-5473 TCGA-34-2600 TCGA-34-5929 TCGA-43-3920 
       28.34         4.31        63.52        61.61         4.96        18.84 
TCGA-60-2723 TCGA-66-2786 TCGA-66-2787 
       22.78        25.97        40.01 

$`CLVS2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57        10.82         7.33         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 
        7.73        14.07        22.95         5.52         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 
        3.98        12.00        24.95         1.94        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CLVS2 MUTATED CLVS2 WILD-TYPE 
           4.31            0.10 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
          63.52          173.79 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
          25.97           16.09 
[1] "4.3 - 63.5 (26.0)"  "0.1 - 173.8 (16.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLVS2 MUTATED      4    5
  CLVS2 WILD-TYPE   43  126
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  FEMALE             4              43
  MALE               5             126
D37V4, continuous
[1] "Remove cluster labels:" "CLVS2 MUTATED"         
clus
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
D37V5, multiclass
                                                             clus
vv                                                            CLVS2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            CLVS2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
D37V6, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  T1             4              32
  T2             4             112
  T3             1              13
  T4             0              12
D37V7, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  N0             8             109
  N1             1              38
  N2             0              17
  N3             0               5
D37V8, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             0               6
D37V9, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  I                  8              89
  II                 1              37
  III+IV             0              41
D37V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLVS2 MUTATED      0    9
  CLVS2 WILD-TYPE    4  165
     clus
vv    CLVS2 MUTATED CLVS2 WILD-TYPE
  NO              0               4
  YES             9             165
D37V11, continuous
D37V12, continuous
D37V13, multiclass
                                             clus
vv                                            CLVS2 MUTATED CLVS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D37V14, continuous

Clustering(38) Variable = MTNR1B MUTATION ANALYSIS
D38V1, survival
                  sevent
clus2               0  1
  MTNR1B MUTATED    6  3
  MTNR1B WILD-TYPE 91 67
  MTNR1B MUTATED MTNR1B WILD-TYPE 
               9              158 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
               3               67 
$`MTNR1B MUTATED`
TCGA-22-5471 TCGA-22-5489 TCGA-60-2698 TCGA-60-2707 TCGA-60-2711 TCGA-60-2715 
       31.69        62.86        10.22        21.70        29.19        35.34 
TCGA-60-2724 TCGA-66-2756 TCGA-66-2787 
        1.22         0.99        40.01 

$`MTNR1B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        13.12        19.30        11.77        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        0.10         2.04         1.02        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       22.78        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        25.97        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  MTNR1B MUTATED MTNR1B WILD-TYPE 
            0.99             0.10 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
           62.86           173.79 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
           29.19            16.78 
[1] "1.0 - 62.9 (29.2)"  "0.1 - 173.8 (16.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
[1] "hr=" "1.3"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MTNR1B MUTATED      1    9
  MTNR1B WILD-TYPE   46  122
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  FEMALE              1               46
  MALE                9              122
D38V4, continuous
D38V5, multiclass
                                                             clus
vv                                                            MTNR1B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             10
                                                             clus
vv                                                            MTNR1B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              162
D38V6, multiclass
    clus
vv   MTNR1B MUTATED MTNR1B WILD-TYPE
  T1              3               33
  T2              5              111
  T3              1               13
  T4              1               11
D38V7, multiclass
    clus
vv   MTNR1B MUTATED MTNR1B WILD-TYPE
  N0              7              110
  N1              3               36
  N2              0               17
  N3              0                5
D38V8, multiclass
    clus
vv   MTNR1B MUTATED MTNR1B WILD-TYPE
  M0             10              155
  M1              0                3
  MX              0                6
D38V9, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  I                   6               91
  II                  2               36
  III+IV              2               39
D38V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MTNR1B MUTATED      1    9
  MTNR1B WILD-TYPE    3  165
     clus
vv    MTNR1B MUTATED MTNR1B WILD-TYPE
  NO               1                3
  YES              9              165
D38V11, continuous
D38V12, continuous
D38V13, multiclass
                                             clus
vv                                            MTNR1B MUTATED MTNR1B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              9               85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D38V14, continuous

Clustering(39) Variable = OR10G8 MUTATION ANALYSIS
D39V1, survival
                  sevent
clus2               0  1
  OR10G8 MUTATED    6  4
  OR10G8 WILD-TYPE 91 66
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              157 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               4               66 
$`OR10G8 MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-22-5473 TCGA-22-5485 TCGA-33-4566 TCGA-33-4583 
       79.46         4.80        63.52        30.08       173.79       141.34 
TCGA-43-3920 TCGA-43-6647 TCGA-60-2708 TCGA-85-6561 
       18.84         6.02        68.45         0.79 

$`OR10G8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        71.34        11.74        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       11.57         8.48         7.00         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 
        0.10         2.04         1.02        10.22        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 
        0.36 

  OR10G8 MUTATED OR10G8 WILD-TYPE 
            0.79             0.10 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
          173.79           115.59 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
            46.8             16.6 
[1] "0.8 - 173.8 (46.8)" "0.1 - 115.6 (16.6)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
[1] "hr=" "2.8"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      3    7
  OR10G8 WILD-TYPE   44  124
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  FEMALE              3               44
  MALE                7              124
D39V4, continuous
D39V5, multiclass
                                                             clus
vv                                                            OR10G8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            OR10G8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
D39V6, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  T1              3               33
  T2              5              111
  T3              2               12
  T4              0               12
D39V7, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  N0              8              109
  N1              2               37
  N2              0               17
  N3              0                5
D39V8, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              1                5
D39V9, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  I                   5               92
  II                  3               35
  III+IV              1               40
D39V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      0   10
  OR10G8 WILD-TYPE    4  164
     clus
vv    OR10G8 MUTATED OR10G8 WILD-TYPE
  NO               0                4
  YES             10              164
D39V11, continuous
D39V12, continuous
D39V13, multiclass
                                             clus
vv                                            OR10G8 MUTATED OR10G8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D39V14, continuous

Clustering(40) Variable = MS4A14 MUTATION ANALYSIS
D40V1, survival
                  sevent
clus2               0  1
  MS4A14 MUTATED    7  6
  MS4A14 WILD-TYPE 90 64
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              13              154 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
               6               64 
$`MS4A14 MUTATED`
TCGA-18-3409 TCGA-18-3415 TCGA-18-4083 TCGA-22-4595 TCGA-22-4604 TCGA-22-4613 
       79.46        59.51         6.15        24.13        13.12        11.77 
TCGA-39-5021 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-60-2726 TCGA-66-2763 
       68.58        18.84         8.48         7.00        11.77         0.99 
TCGA-66-2788 
       22.98 

$`MS4A14 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-5471 
       20.45        35.08        38.17        34.75        19.30        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 
        6.81         0.39         3.39        74.07        44.71        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       26.07        24.10        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  MS4A14 MUTATED MS4A14 WILD-TYPE 
            0.99             0.10 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
           79.46           173.79 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
           13.12            17.98 
[1] "1.0 - 79.5 (13.1)"  "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED"   "MS4A14 MUTATED"   "MS4A14 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED"   "MS4A14 MUTATED"   "MS4A14 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED"   "MS4A14 MUTATED"   "MS4A14 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
[1] "hr=" "1.1"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A14 MUTATED      2   11
  MS4A14 WILD-TYPE   45  120
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  FEMALE              2               45
  MALE               11              120
D40V4, continuous
D40V5, multiclass
                                                             clus
vv                                                            MS4A14 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             11
                                                             clus
vv                                                            MS4A14 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              161
D40V6, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  T1              3               33
  T2              9              107
  T3              1               13
  T4              0               12
D40V7, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  N0              8              109
  N1              4               35
  N2              1               16
  N3              0                5
D40V8, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  M0             12              153
  M1              0                3
  MX              0                6
D40V9, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  I                   7               90
  II                  4               34
  III+IV              1               40
D40V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A14 MUTATED      1   12
  MS4A14 WILD-TYPE    3  162
     clus
vv    MS4A14 MUTATED MS4A14 WILD-TYPE
  NO               1                3
  YES             12              162
D40V11, continuous
D40V12, continuous
D40V13, multiclass
                                             clus
vv                                            MS4A14 MUTATED MS4A14 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               38
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0                8
D40V14, continuous

Clustering(41) Variable = REG3A MUTATION ANALYSIS
D41V1, survival
                 sevent
clus2              0  1
  REG3A MUTATED    4  6
  REG3A WILD-TYPE 93 64
  REG3A MUTATED REG3A WILD-TYPE 
             10             157 
  REG3A MUTATED REG3A WILD-TYPE 
              6              64 
$`REG3A MUTATED`
TCGA-21-5782 TCGA-21-5786 TCGA-22-5473 TCGA-33-4586 TCGA-34-5929 TCGA-39-5036 
       31.63        21.57        63.52        14.07         4.96        35.64 
TCGA-51-4079 TCGA-56-1622 TCGA-66-2756 TCGA-66-2787 
        0.39        28.93         0.99        40.01 

$`REG3A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53       141.34        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 
        7.73        14.07        22.95         5.52         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        15.58         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 
        5.42         9.96         0.95         0.59         0.39         2.07 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
       24.95         1.94        25.97        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  REG3A MUTATED REG3A WILD-TYPE 
           0.39            0.10 
  REG3A MUTATED REG3A WILD-TYPE 
          63.52          173.79 
  REG3A MUTATED REG3A WILD-TYPE 
          25.25           16.96 
[1] "0.4 - 63.5 (25.2)"  "0.1 - 173.8 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "REG3A MUTATED" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "REG3A MUTATED" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "REG3A MUTATED" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
[1] "hr=" "1.5"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      3    7
  REG3A WILD-TYPE   44  124
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  FEMALE             3              44
  MALE               7             124
D41V4, continuous
[1] "Remove cluster labels:" "REG3A MUTATED"         
clus
  REG3A MUTATED REG3A WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5474      TCGA-22-5477 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" 
D41V5, multiclass
                                                             clus
vv                                                            REG3A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            REG3A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
D41V6, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  T1             1              35
  T2             7             109
  T3             1              13
  T4             1              11
D41V7, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  N0             9             108
  N1             0              39
  N2             1              16
  N3             0               5
D41V8, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  M0             9             156
  M1             0               3
  MX             0               6
D41V9, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  I                  8              89
  II                 0              38
  III+IV             2              39
D41V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      0   10
  REG3A WILD-TYPE    4  164
     clus
vv    REG3A MUTATED REG3A WILD-TYPE
  NO              0               4
  YES            10             164
D41V11, continuous
D41V12, continuous
D41V13, multiclass
                                             clus
vv                                            REG3A MUTATED REG3A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D41V14, continuous

Clustering(42) Variable = SPANXN1 MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                0  1
  SPANXN1 MUTATED    5  0
  SPANXN1 WILD-TYPE 92 70
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               162 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                0                70 
$`SPANXN1 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-33-4532 TCGA-34-5232 TCGA-60-2711 
       79.46       115.59        82.98        51.78        29.19 

$`SPANXN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        50.24        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
            29.19              0.10 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
           115.59            173.79 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
            79.46             16.09 
[1] "29.2 - 115.6 (79.5)" "0.1 - 173.8 (16.1)" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN1 MUTATED      3    2
  SPANXN1 WILD-TYPE   44  129
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  FEMALE               3                44
  MALE                 2               129
D42V4, continuous
D42V5, multiclass
                                                             clus
vv                                                            SPANXN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               4
                                                             clus
vv                                                            SPANXN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               168
D42V6, multiclass
    clus
vv   SPANXN1 MUTATED SPANXN1 WILD-TYPE
  T1               2                34
  T2               2               114
  T3               1                13
  T4               0                12
D42V7, multiclass
    clus
vv   SPANXN1 MUTATED SPANXN1 WILD-TYPE
  N0               4               113
  N1               1                38
  N2               0                17
  N3               0                 5
D42V8, multiclass
    clus
vv   SPANXN1 MUTATED SPANXN1 WILD-TYPE
  M0               5               160
  M1               0                 3
  MX               0                 6
D42V9, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  I                    2                95
  II                   1                37
  III+IV               1                40
D42V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN1 MUTATED      0    5
  SPANXN1 WILD-TYPE    4  169
     clus
vv    SPANXN1 MUTATED SPANXN1 WILD-TYPE
  NO                0                 4
  YES               5               169
D42V11, continuous
D42V12, continuous
D42V13, multiclass
                                             clus
vv                                            SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D42V14, continuous
[1] "Remove cluster labels:" "SPANXN1 MUTATED"       
clus
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                1               104 
       TCGA-18-3406        TCGA-18-3417        TCGA-21-1078        TCGA-21-5782 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5786        TCGA-21-5787        TCGA-22-0944        TCGA-22-1002 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-4591 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4607        TCGA-22-4613        TCGA-22-5472 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5473        TCGA-22-5474        TCGA-22-5480        TCGA-22-5482 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4533        TCGA-33-4547        TCGA-33-4582 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4583        TCGA-33-4586        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-5819        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-6143        TCGA-43-6647 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6770        TCGA-43-6771        TCGA-56-1622        TCGA-56-5898 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2712        TCGA-60-2713 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-63-6202        TCGA-66-2727        TCGA-66-2734        TCGA-66-2742 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2770 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 

Clustering(43) Variable = KCNJ3 MUTATION ANALYSIS
D43V1, survival
                 sevent
clus2              0  1
  KCNJ3 MUTATED    7  4
  KCNJ3 WILD-TYPE 90 66
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             156 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
              4              66 
$`KCNJ3 MUTATED`
TCGA-22-1012 TCGA-22-4599 TCGA-22-4604 TCGA-33-4566 TCGA-37-3789 TCGA-43-2578 
       14.10        38.17        13.12       173.79         0.43        18.08 
TCGA-60-2709 TCGA-66-2759 TCGA-66-2765 TCGA-66-2770 TCGA-66-2785 
       49.48        25.02         2.01        23.01         1.94 

$`KCNJ3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
        1.74        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.70        68.45        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 
        0.99         1.02         2.01         2.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
           0.43            0.10 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
         173.79          141.34 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
          18.08           17.42 
[1] "0.4 - 173.8 (18.1)" "0.1 - 141.3 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
[1] "hr=" "1.7"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNJ3 MUTATED      3    8
  KCNJ3 WILD-TYPE   44  123
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  FEMALE             3              44
  MALE               8             123
D43V4, continuous
[1] "Remove cluster labels:" "KCNJ3 MUTATED"         
clus
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4601      TCGA-22-4613 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
D43V5, multiclass
                                                             clus
vv                                                            KCNJ3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            KCNJ3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
D43V6, multiclass
    clus
vv   KCNJ3 MUTATED KCNJ3 WILD-TYPE
  T1             1              35
  T2            10             106
  T3             0              14
  T4             0              12
D43V7, multiclass
    clus
vv   KCNJ3 MUTATED KCNJ3 WILD-TYPE
  N0             9             108
  N1             1              38
  N2             1              16
  N3             0               5
D43V8, multiclass
    clus
vv   KCNJ3 MUTATED KCNJ3 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             1               5
D43V9, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  I                  9              88
  II                 1              37
  III+IV             1              40
D43V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNJ3 MUTATED      0   11
  KCNJ3 WILD-TYPE    4  163
     clus
vv    KCNJ3 MUTATED KCNJ3 WILD-TYPE
  NO              0               4
  YES            11             163
D43V11, continuous
D43V12, continuous
D43V13, multiclass
                                             clus
vv                                            KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     1               7
D43V14, continuous

Clustering(44) Variable = OR4M1 MUTATION ANALYSIS
D44V1, survival
                 sevent
clus2              0  1
  OR4M1 MUTATED    8  5
  OR4M1 WILD-TYPE 89 65
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             154 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
              5              65 
$`OR4M1 MUTATED`
TCGA-18-3411 TCGA-18-3419 TCGA-21-5784 TCGA-21-5786 TCGA-22-4593 TCGA-34-5929 
       46.52         1.61        29.85        21.57        35.08         4.96 
TCGA-39-5027 TCGA-43-6143 TCGA-51-4080 TCGA-60-2724 TCGA-66-2744 TCGA-66-2782 
       60.76         7.00         0.39         1.22         0.99        12.00 
TCGA-66-2791 
        5.03 

$`OR4M1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5787 
       60.89        34.78        15.55         9.30        31.63        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10        22.78        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR4M1 MUTATED OR4M1 WILD-TYPE 
           0.39            0.10 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
          60.76          173.79 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
           7.00           18.46 
[1] "0.4 - 60.8 (7.0)"   "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
[1] "hr=" "1.4"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M1 MUTATED      3   10
  OR4M1 WILD-TYPE   44  121
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  FEMALE             3              44
  MALE              10             121
D44V4, continuous
[1] "Remove cluster labels:" "OR4M1 MUTATED"         
clus
  OR4M1 MUTATED OR4M1 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
D44V5, multiclass
                                                             clus
vv                                                            OR4M1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            OR4M1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
D44V6, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  T1             0              36
  T2            10             106
  T3             2              12
  T4             1              11
D44V7, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  N0             7             110
  N1             4              35
  N2             1              16
  N3             1               4
D44V8, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  M0            12             153
  M1             0               3
  MX             0               6
D44V9, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  I                  5              92
  II                 4              34
  III+IV             4              37
D44V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M1 MUTATED      0   13
  OR4M1 WILD-TYPE    4  161
     clus
vv    OR4M1 MUTATED OR4M1 WILD-TYPE
  NO              0               4
  YES            13             161
D44V11, continuous
D44V12, continuous
D44V13, multiclass
                                             clus
vv                                            OR4M1 MUTATED OR4M1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0               8
D44V14, continuous

Clustering(45) Variable = TECRL MUTATION ANALYSIS
D45V1, survival
                 sevent
clus2              0  1
  TECRL MUTATED    6  3
  TECRL WILD-TYPE 91 67
  TECRL MUTATED TECRL WILD-TYPE 
              9             158 
  TECRL MUTATED TECRL WILD-TYPE 
              3              67 
$`TECRL MUTATED`
TCGA-22-4599 TCGA-33-6737 TCGA-37-4141 TCGA-39-5024 TCGA-39-5039 TCGA-43-6143 
       38.17        19.76         0.39        70.03        17.88         7.00 
TCGA-43-6770 TCGA-60-2708 TCGA-66-2756 
        2.79        68.45         0.99 

$`TECRL WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        55.17        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6771 
       18.08        11.57        18.84         8.48         6.02         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  TECRL MUTATED TECRL WILD-TYPE 
           0.39            0.10 
  TECRL MUTATED TECRL WILD-TYPE 
          70.03          173.79 
  TECRL MUTATED TECRL WILD-TYPE 
          17.88           17.52 
[1] "0.4 - 70.0 (17.9)"  "0.1 - 173.8 (17.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
[1] "hr=" "1.3"
D45V2, continuous
D45V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TECRL MUTATED      5    4
  TECRL WILD-TYPE   42  127
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  FEMALE             5              42
  MALE               4             127
D45V4, continuous
[1] "Remove cluster labels:" "TECRL MUTATED"         
clus
  TECRL MUTATED TECRL WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4601      TCGA-22-4604 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
D45V5, multiclass
                                                             clus
vv                                                            TECRL MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            TECRL WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
D45V6, multiclass
    clus
vv   TECRL MUTATED TECRL WILD-TYPE
  T1             1              35
  T2             7             109
  T3             0              14
  T4             1              11
D45V7, multiclass
    clus
vv   TECRL MUTATED TECRL WILD-TYPE
  N0             6             111
  N1             1              38
  N2             2              15
  N3             0               5
D45V8, multiclass
    clus
vv   TECRL MUTATED TECRL WILD-TYPE
  M0             8             157
  M1             0               3
  MX             1               5
D45V9, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             3              38
D45V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TECRL MUTATED      0    9
  TECRL WILD-TYPE    4  165
     clus
vv    TECRL MUTATED TECRL WILD-TYPE
  NO              0               4
  YES             9             165
D45V11, continuous
D45V12, continuous
D45V13, multiclass
                                             clus
vv                                            TECRL MUTATED TECRL WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1               7
D45V14, continuous

Clustering(46) Variable = OR6K3 MUTATION ANALYSIS
D46V1, survival
                 sevent
clus2              0  1
  OR6K3 MUTATED    5  3
  OR6K3 WILD-TYPE 92 67
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             159 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              3              67 
$`OR6K3 MUTATED`
TCGA-18-3412 TCGA-18-4083 TCGA-21-1081 TCGA-33-4583 TCGA-34-5240 TCGA-66-2757 
       11.34         6.15         9.30       141.34         7.73         0.99 
TCGA-66-2766 TCGA-66-2785 
        1.02         1.94 

$`OR6K3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR6K3 MUTATED OR6K3 WILD-TYPE 
           0.99            0.10 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
         141.34          173.79 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
           6.94           19.00 
[1] "1.0 - 141.3 (6.9)"  "0.1 - 173.8 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
[1] "hr=" "1.3"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K3 MUTATED      2    6
  OR6K3 WILD-TYPE   45  125
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  FEMALE             2              45
  MALE               6             125
D46V4, continuous
D46V5, multiclass
                                                             clus
vv                                                            OR6K3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR6K3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D46V6, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  T1             2              34
  T2             6             110
  T3             0              14
  T4             0              12
D46V7, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  N0             4             113
  N1             3              36
  N2             1              16
  N3             0               5
D46V8, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
D46V9, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  I                  4              93
  II                 3              35
  III+IV             1              40
D46V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K3 MUTATED      0    8
  OR6K3 WILD-TYPE    4  166
     clus
vv    OR6K3 MUTATED OR6K3 WILD-TYPE
  NO              0               4
  YES             8             166
D46V11, continuous
D46V12, continuous
D46V13, multiclass
                                             clus
vv                                            OR6K3 MUTATED OR6K3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D46V14, continuous

Clustering(47) Variable = ASCL4 MUTATION ANALYSIS
D47V1, survival
                 sevent
clus2              0  1
  ASCL4 MUTATED    2  3
  ASCL4 WILD-TYPE 95 67
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              5             162 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              3              67 
$`ASCL4 MUTATED`
TCGA-22-4613 TCGA-33-4566 TCGA-37-4141 TCGA-66-2755 TCGA-66-2791 
       11.77       173.79         0.39         0.92         5.03 

$`ASCL4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 
        1.94        25.97        40.01        22.98         4.04        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  ASCL4 MUTATED ASCL4 WILD-TYPE 
           0.39            0.10 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
         173.79          141.34 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
           5.03           18.46 
[1] "0.4 - 173.8 (5.0)"  "0.1 - 141.3 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
[1] "hr=" "1"  
D47V2, continuous
D47V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL4 MUTATED      2    4
  ASCL4 WILD-TYPE   45  127
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  FEMALE             2              45
  MALE               4             127
D47V4, continuous
[1] "Remove cluster labels:" "ASCL4 MUTATED"         
clus
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
D47V5, multiclass
                                                             clus
vv                                                            ASCL4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            ASCL4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D47V6, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  T1             2              34
  T2             4             112
  T3             0              14
  T4             0              12
D47V7, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  N0             5             112
  N1             0              39
  N2             0              17
  N3             1               4
D47V8, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
D47V9, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  I                  5              92
  II                 0              38
  III+IV             1              40
D47V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL4 MUTATED      0    6
  ASCL4 WILD-TYPE    4  168
     clus
vv    ASCL4 MUTATED ASCL4 WILD-TYPE
  NO              0               4
  YES             6             168
D47V11, continuous
D47V12, continuous
D47V13, multiclass
                                             clus
vv                                            ASCL4 MUTATED ASCL4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D47V14, continuous

Clustering(48) Variable = OR2A5 MUTATION ANALYSIS
D48V1, survival
                 sevent
clus2              0  1
  OR2A5 MUTATED    5  3
  OR2A5 WILD-TYPE 92 67
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             159 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              3              67 
$`OR2A5 MUTATED`
TCGA-34-5929 TCGA-39-5016 TCGA-43-6771 TCGA-51-4079 TCGA-60-2709 TCGA-60-2711 
        4.96        74.07         5.42         0.39        49.48        29.19 
TCGA-66-2744 TCGA-66-2757 
        0.99         0.99 

$`OR2A5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
       22.95         5.52         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         6.02         2.79         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2712 
        1.02        10.22        21.70        68.45        55.40         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2A5 MUTATED OR2A5 WILD-TYPE 
           0.39            0.10 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
          74.07          173.79 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
           5.19           18.08 
[1] "0.4 - 74.1 (5.2)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "OR2A5 MUTATED" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "OR2A5 MUTATED" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "OR2A5 MUTATED" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
[1] "hr=" "1.1"
D48V2, continuous
D48V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2A5 MUTATED      4    4
  OR2A5 WILD-TYPE   43  127
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  FEMALE             4              43
  MALE               4             127
D48V4, continuous
D48V5, multiclass
                                                             clus
vv                                                            OR2A5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR2A5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D48V6, multiclass
    clus
vv   OR2A5 MUTATED OR2A5 WILD-TYPE
  T1             1              35
  T2             7             109
  T3             0              14
  T4             0              12
D48V7, multiclass
    clus
vv   OR2A5 MUTATED OR2A5 WILD-TYPE
  N0             6             111
  N1             2              37
  N2             0              17
  N3             0               5
D48V8, multiclass
    clus
vv   OR2A5 MUTATED OR2A5 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             2               4
D48V9, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  I                  6              91
  II                 2              36
  III+IV             0              41
D48V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2A5 MUTATED      0    8
  OR2A5 WILD-TYPE    4  166
     clus
vv    OR2A5 MUTATED OR2A5 WILD-TYPE
  NO              0               4
  YES             8             166
D48V11, continuous
D48V12, continuous
D48V13, multiclass
                                             clus
vv                                            OR2A5 MUTATED OR2A5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D48V14, continuous

Clustering(49) Variable = REG1A MUTATION ANALYSIS
D49V1, survival
                 sevent
clus2              0  1
  REG1A MUTATED    7  3
  REG1A WILD-TYPE 90 67
  REG1A MUTATED REG1A WILD-TYPE 
             10             157 
  REG1A MUTATED REG1A WILD-TYPE 
              3              67 
$`REG1A MUTATED`
TCGA-18-3409 TCGA-21-5786 TCGA-22-4613 TCGA-22-5473 TCGA-22-5478 TCGA-37-3783 
       79.46        21.57        11.77        63.52         0.79         3.95 
TCGA-60-2724 TCGA-66-2744 TCGA-66-2766 TCGA-66-2777 
        1.22         0.99         1.02         2.01 

$`REG1A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       13.12        19.30        31.69        64.90        14.60        44.22 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         4.96         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       22.78        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  REG1A MUTATED REG1A WILD-TYPE 
           0.79            0.10 
  REG1A MUTATED REG1A WILD-TYPE 
          79.46          173.79 
  REG1A MUTATED REG1A WILD-TYPE 
           2.98           18.84 
[1] "0.8 - 79.5 (3.0)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
[1] "hr=" "1"  
D49V2, continuous
D49V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1A MUTATED      1   10
  REG1A WILD-TYPE   46  121
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  FEMALE             1              46
  MALE              10             121
D49V4, continuous
D49V5, multiclass
                                                             clus
vv                                                            REG1A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            REG1A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
D49V6, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  T1             2              34
  T2             5             111
  T3             4              10
  T4             0              12
D49V7, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  N0             6             111
  N1             3              36
  N2             2              15
  N3             0               5
D49V8, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  M0            11             154
  M1             0               3
  MX             0               6
D49V9, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             4              37
D49V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1A MUTATED      0   11
  REG1A WILD-TYPE    4  163
     clus
vv    REG1A MUTATED REG1A WILD-TYPE
  NO              0               4
  YES            11             163
D49V11, continuous
D49V12, continuous
D49V13, multiclass
                                             clus
vv                                            REG1A MUTATED REG1A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D49V14, continuous

Clustering(50) Variable = PDYN MUTATION ANALYSIS
D50V1, survival
                sevent
clus2             0  1
  PDYN MUTATED    4  3
  PDYN WILD-TYPE 93 67
  PDYN MUTATED PDYN WILD-TYPE 
             7            160 
  PDYN MUTATED PDYN WILD-TYPE 
             3             67 
$`PDYN MUTATED`
TCGA-21-1070 TCGA-21-5787 TCGA-22-5477 TCGA-34-5928 TCGA-60-2724 TCGA-66-2788 
      115.59        10.82        44.22         5.52         1.22        22.98 
TCGA-66-2793 
       10.06 

$`PDYN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 
       10.82         7.73        14.07        22.95         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        24.10        22.78        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       25.97        40.01         4.04         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  PDYN MUTATED PDYN WILD-TYPE 
          1.22           0.10 
  PDYN MUTATED PDYN WILD-TYPE 
        115.59         173.79 
  PDYN MUTATED PDYN WILD-TYPE 
         10.82          17.98 
[1] "1.2 - 115.6 (10.8)" "0.1 - 173.8 (18.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PDYN MUTATED      2    6
  PDYN WILD-TYPE   45  125
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  FEMALE            2             45
  MALE              6            125
D50V4, continuous
[1] "Remove cluster labels:" "PDYN MUTATED"          
clus
  PDYN MUTATED PDYN WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-22-4591     TCGA-22-4593 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4595     TCGA-22-4599     TCGA-22-4601     TCGA-22-4604 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5485 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5489     TCGA-22-5491     TCGA-22-5492     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" 
D50V5, multiclass
                                                             clus
vv                                                            PDYN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            8
                                                             clus
vv                                                            PDYN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            164
D50V6, multiclass
    clus
vv   PDYN MUTATED PDYN WILD-TYPE
  T1            1             35
  T2            3            113
  T3            2             12
  T4            2             10
D50V7, multiclass
    clus
vv   PDYN MUTATED PDYN WILD-TYPE
  N0            4            113
  N1            3             36
  N2            1             16
  N3            0              5
D50V8, multiclass
    clus
vv   PDYN MUTATED PDYN WILD-TYPE
  M0            8            157
  M1            0              3
  MX            0              6
D50V9, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  I                 2             95
  II                2             36
  III+IV            4             37
D50V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PDYN MUTATED      1    7
  PDYN WILD-TYPE    3  167
     clus
vv    PDYN MUTATED PDYN WILD-TYPE
  NO             1              3
  YES            7            167
D50V11, continuous
D50V12, continuous
D50V13, multiclass
                                             clus
vv                                            PDYN MUTATED PDYN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             42
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D50V14, continuous

Clustering(51) Variable = POTEG MUTATION ANALYSIS
D51V1, survival
                 sevent
clus2              0  1
  POTEG MUTATED    5  4
  POTEG WILD-TYPE 92 66
  POTEG MUTATED POTEG WILD-TYPE 
              9             158 
  POTEG MUTATED POTEG WILD-TYPE 
              4              66 
$`POTEG MUTATED`
TCGA-18-3416 TCGA-21-1070 TCGA-21-5782 TCGA-22-5480 TCGA-39-5016 TCGA-39-5019 
       28.34       115.59        31.63        71.34        74.07        44.71 
TCGA-39-5028 TCGA-60-2726 TCGA-66-2756 
        1.71        11.77         0.99 

$`POTEG WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5021 
        0.43         7.82         6.81         0.39         3.39        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
        1.22        23.64        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  POTEG MUTATED POTEG WILD-TYPE 
           0.99            0.10 
  POTEG MUTATED POTEG WILD-TYPE 
         115.59          173.79 
  POTEG MUTATED POTEG WILD-TYPE 
          31.63           16.78 
[1] "1.0 - 115.6 (31.6)" "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"POTEG WILD-TYPE"   "POTEG MUTATED"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"POTEG WILD-TYPE"   "POTEG MUTATED"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"POTEG WILD-TYPE"   "POTEG MUTATED"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
[1] "hr=" "1.6"
D51V2, continuous
D51V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEG MUTATED      3    7
  POTEG WILD-TYPE   44  124
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  FEMALE             3              44
  MALE               7             124
D51V4, continuous
D51V5, multiclass
                                                             clus
vv                                                            POTEG MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            POTEG WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
D51V6, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  T1             1              35
  T2             5             111
  T3             1              13
  T4             3               9
D51V7, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  N0             6             111
  N1             4              35
  N2             0              17
  N3             0               5
D51V8, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
D51V9, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  I                  3              94
  II                 4              34
  III+IV             3              38
D51V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEG MUTATED      0   10
  POTEG WILD-TYPE    4  164
     clus
vv    POTEG MUTATED POTEG WILD-TYPE
  NO              0               4
  YES            10             164
D51V11, continuous
D51V12, continuous
D51V13, multiclass
                                             clus
vv                                            POTEG MUTATED POTEG WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D51V14, continuous

Clustering(52) Variable = RB1 MUTATION ANALYSIS
D52V1, survival
               sevent
clus2            0  1
  RB1 MUTATED    7  5
  RB1 WILD-TYPE 90 65
  RB1 MUTATED RB1 WILD-TYPE 
           12           155 
  RB1 MUTATED RB1 WILD-TYPE 
            5            65 
$`RB1 MUTATED`
TCGA-18-4086 TCGA-22-4601 TCGA-22-4607 TCGA-33-4533 TCGA-34-5240 TCGA-39-5021 
        2.79        34.75        19.30       114.05         7.73        68.58 
TCGA-39-5031 TCGA-43-2578 TCGA-43-6143 TCGA-56-1622 TCGA-66-2754 TCGA-66-2783 
       27.35        18.08         7.00        28.93         2.01        24.95 

$`RB1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60        82.98        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 
       15.58        35.64         0.79        17.88        11.57        18.84 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         0.39         2.07         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         0.99         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  RB1 MUTATED RB1 WILD-TYPE 
         2.01          0.10 
  RB1 MUTATED RB1 WILD-TYPE 
       114.05        173.79 
  RB1 MUTATED RB1 WILD-TYPE 
       22.125        16.600 
[1] "2.0 - 114.0 (22.1)" "0.1 - 173.8 (16.6)"
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" 
[1] "hr=" "1.2"
D52V2, continuous
D52V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      5    7
  RB1 WILD-TYPE   42  124
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           5            42
  MALE             7           124
D52V4, continuous
[1] "Remove cluster labels:" "RB1 MUTATED"           
clus
  RB1 MUTATED RB1 WILD-TYPE 
            1            35 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3410    TCGA-18-3414    TCGA-18-3419 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5782    TCGA-21-5787    TCGA-22-4591    TCGA-22-4593    TCGA-22-4595 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4599    TCGA-22-4604    TCGA-22-4613    TCGA-22-5472    TCGA-22-5473 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5474    TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5485    TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-34-5234 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-4133    TCGA-37-4135    TCGA-37-5819    TCGA-60-2698    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2715    TCGA-60-2725    TCGA-60-2726    TCGA-70-6722    TCGA-70-6723 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
D52V5, multiclass
                                                             clus
vv                                                            RB1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                 2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          10
                                                             clus
vv                                                            RB1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           162
D52V6, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  T1           2            34
  T2           9           107
  T3           0            14
  T4           1            11
D52V7, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  N0           9           108
  N1           1            38
  N2           1            16
  N3           1             4
D52V8, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  M0          12           153
  M1           0             3
  MX           0             6
D52V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  I                8            89
  II               1            37
  III+IV           3            38
D52V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0   12
  RB1 WILD-TYPE    4  162
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            0             4
  YES          12           162
D52V11, continuous
D52V12, continuous
D52V13, multiclass
                                             clus
vv                                            RB1 MUTATED RB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           8            86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2            41
  CURRENT SMOKER                                        2            26
  LIFELONG NON-SMOKER                                   0             8
D52V14, continuous

Clustering(53) Variable = CLSTN2 MUTATION ANALYSIS
D53V1, survival
                  sevent
clus2               0  1
  CLSTN2 MUTATED    7  8
  CLSTN2 WILD-TYPE 90 62
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              15              152 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
               8               62 
$`CLSTN2 MUTATED`
TCGA-18-3414 TCGA-22-5473 TCGA-33-4583 TCGA-34-2600 TCGA-34-5236 TCGA-39-5039 
       13.02        63.52       141.34        61.61         9.04        17.88 
TCGA-43-3394 TCGA-43-6771 TCGA-51-4080 TCGA-60-2712 TCGA-60-2724 TCGA-66-2754 
       11.57         5.42         0.39         9.01         1.22         2.01 
TCGA-66-2757 TCGA-66-2786 TCGA-66-2795 
        0.99        25.97         4.01 

$`CLSTN2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 
       32.84        50.24        51.78        32.68        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-2578 
        1.94        27.35        15.58        35.64         0.79        18.08 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 
       18.84         8.48         7.00         6.02         2.79         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       55.40        29.19        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        24.10        22.78        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 
       43.10        21.07         0.99         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95         1.94        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 
        4.04         5.03        30.02        10.06        54.08        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
            0.39             0.10 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
          141.34           173.79 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
            9.04            19.00 
[1] "0.4 - 141.3 (9.0)"  "0.1 - 173.8 (19.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
[1] "hr=" "1.6"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLSTN2 MUTATED      4   12
  CLSTN2 WILD-TYPE   43  119
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  FEMALE              4               43
  MALE               12              119
D53V4, continuous
D53V5, multiclass
                                                             clus
vv                                                            CLSTN2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             15
                                                             clus
vv                                                            CLSTN2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              157
D53V6, multiclass
    clus
vv   CLSTN2 MUTATED CLSTN2 WILD-TYPE
  T1              4               32
  T2              5              111
  T3              3               11
  T4              4                8
D53V7, multiclass
    clus
vv   CLSTN2 MUTATED CLSTN2 WILD-TYPE
  N0             10              107
  N1              5               34
  N2              1               16
  N3              0                5
D53V8, multiclass
    clus
vv   CLSTN2 MUTATED CLSTN2 WILD-TYPE
  M0             13              152
  M1              1                2
  MX              1                5
D53V9, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  I                   7               90
  II                  4               34
  III+IV              5               36
D53V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLSTN2 MUTATED      0   16
  CLSTN2 WILD-TYPE    4  158
     clus
vv    CLSTN2 MUTATED CLSTN2 WILD-TYPE
  NO               0                4
  YES             16              158
D53V11, continuous
D53V12, continuous
D53V13, multiclass
                                             clus
vv                                            CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             10               84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D53V14, continuous

Clustering(54) Variable = PARK2 MUTATION ANALYSIS
D54V1, survival
                 sevent
clus2              0  1
  PARK2 MUTATED    6  4
  PARK2 WILD-TYPE 91 66
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             157 
  PARK2 MUTATED PARK2 WILD-TYPE 
              4              66 
$`PARK2 MUTATED`
TCGA-18-3409 TCGA-21-1081 TCGA-21-5787 TCGA-22-4593 TCGA-34-2608 TCGA-60-2713 
       79.46         9.30        10.82        35.08        32.84        47.87 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2763 TCGA-66-2777 
        2.01         0.99         0.99         2.01 

$`PARK2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 
       46.88        60.89        34.78        15.55        31.63        29.85 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         0.99         0.92         0.99        20.98        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  PARK2 MUTATED PARK2 WILD-TYPE 
           0.99            0.10 
  PARK2 MUTATED PARK2 WILD-TYPE 
          79.46          173.79 
  PARK2 MUTATED PARK2 WILD-TYPE 
          10.06           18.08 
[1] "1.0 - 79.5 (10.1)"  "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
[1] "hr=" "1.1"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARK2 MUTATED      2    8
  PARK2 WILD-TYPE   45  123
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  FEMALE             2              45
  MALE               8             123
D54V4, continuous
[1] "Remove cluster labels:" "PARK2 MUTATED"         
clus
  PARK2 MUTATED PARK2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-22-4591      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
D54V5, multiclass
                                                             clus
vv                                                            PARK2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            PARK2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
D54V6, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  T1             2              34
  T2             8             108
  T3             0              14
  T4             0              12
D54V7, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  N0             7             110
  N1             1              38
  N2             2              15
  N3             0               5
D54V8, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
D54V9, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  I                  5              92
  II                 2              36
  III+IV             2              39
D54V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARK2 MUTATED      1    9
  PARK2 WILD-TYPE    3  165
     clus
vv    PARK2 MUTATED PARK2 WILD-TYPE
  NO              1               3
  YES             9             165
D54V11, continuous
D54V12, continuous
D54V13, multiclass
                                             clus
vv                                            PARK2 MUTATED PARK2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D54V14, continuous

Clustering(55) Variable = PYHIN1 MUTATION ANALYSIS
D55V1, survival
                  sevent
clus2               0  1
  PYHIN1 MUTATED    8  3
  PYHIN1 WILD-TYPE 89 67
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              156 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               3               67 
$`PYHIN1 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-21-5784 TCGA-22-4599 TCGA-37-3789 TCGA-37-4133 
       79.46       115.59        29.85        38.17         0.43         7.82 
TCGA-39-5030 TCGA-43-6770 TCGA-56-6545 TCGA-66-2773 TCGA-66-2792 
        1.94         2.79         2.04         3.02        30.02 

$`PYHIN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 
       60.89        34.78        15.55         9.30        31.63        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        24.13        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 
       55.17        70.03        60.76         1.71        24.33        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         7.00         6.02         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
            0.43             0.10 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
          115.59           173.79 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
            7.82            17.98 
[1] "0.4 - 115.6 (7.8)"  "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "PYHIN1 MUTATED"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "PYHIN1 MUTATED"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "PYHIN1 MUTATED"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
[1] "hr=" "1.6"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      6    5
  PYHIN1 WILD-TYPE   41  126
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  FEMALE              6               41
  MALE                5              126
D55V4, continuous
[1] "Remove cluster labels:" "PYHIN1 MUTATED"        
clus
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
D55V5, multiclass
                                                             clus
vv                                                            PYHIN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             10
                                                             clus
vv                                                            PYHIN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              162
D55V6, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  T1              1               35
  T2              8              108
  T3              1               13
  T4              1               11
D55V7, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  N0              9              108
  N1              1               38
  N2              1               16
  N3              0                5
D55V8, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              1                5
D55V9, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  I                   6               91
  II                  1               37
  III+IV              3               38
D55V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      0   11
  PYHIN1 WILD-TYPE    4  163
     clus
vv    PYHIN1 MUTATED PYHIN1 WILD-TYPE
  NO               0                4
  YES             11              163
D55V11, continuous
D55V12, continuous
D55V13, multiclass
                                             clus
vv                                            PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      1                7
D55V14, continuous

Clustering(56) Variable = FAM5B MUTATION ANALYSIS
D56V1, survival
                 sevent
clus2              0  1
  FAM5B MUTATED   11  3
  FAM5B WILD-TYPE 86 67
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             153 
  FAM5B MUTATED FAM5B WILD-TYPE 
              3              67 
$`FAM5B MUTATED`
TCGA-18-3421 TCGA-21-5784 TCGA-33-4586 TCGA-39-5016 TCGA-39-5022 TCGA-39-5035 
       43.76        29.85        14.07        74.07        55.17        15.58 
TCGA-43-5668 TCGA-56-6545 TCGA-60-2720 TCGA-66-2744 TCGA-66-2768 TCGA-66-2787 
        8.48         2.04         3.16         0.99         2.01        40.01 
TCGA-66-2791 TCGA-85-6560 
        5.03         0.36 

$`FAM5B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53       141.34        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 
       11.77        16.96        43.10        21.07         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       25.97        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  FAM5B MUTATED FAM5B WILD-TYPE 
           0.36            0.10 
  FAM5B MUTATED FAM5B WILD-TYPE 
          74.07          173.79 
  FAM5B MUTATED FAM5B WILD-TYPE 
         11.275          18.840 
[1] "0.4 - 74.1 (11.3)"  "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
[1] "hr=" "1.7"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5B MUTATED      4   10
  FAM5B WILD-TYPE   43  121
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  FEMALE             4              43
  MALE              10             121
D56V4, continuous
D56V5, multiclass
                                                             clus
vv                                                            FAM5B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            FAM5B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
D56V6, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  T1             3              33
  T2            11             105
  T3             0              14
  T4             0              12
D56V7, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  N0             7             110
  N1             5              34
  N2             1              16
  N3             1               4
D56V8, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  M0            14             151
  M1             0               3
  MX             0               6
D56V9, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  I                  7              90
  II                 4              34
  III+IV             3              38
D56V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5B MUTATED      0   14
  FAM5B WILD-TYPE    4  160
     clus
vv    FAM5B MUTATED FAM5B WILD-TYPE
  NO              0               4
  YES            14             160
D56V11, continuous
D56V12, continuous
D56V13, multiclass
                                             clus
vv                                            FAM5B MUTATED FAM5B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            11              83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D56V14, continuous

Clustering(57) Variable = SLC17A8 MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                0  1
  SLC17A8 MUTATED    5  7
  SLC17A8 WILD-TYPE 92 63
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               12               155 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
                7                63 
$`SLC17A8 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-21-5782 TCGA-22-4613 TCGA-22-5473 TCGA-22-5491 
       79.46        28.34        31.63        11.77        63.52        56.32 
TCGA-34-5929 TCGA-37-3783 TCGA-37-4141 TCGA-51-4080 TCGA-60-2726 TCGA-66-2787 
        4.96         3.95         0.39         0.39        11.77        40.01 

$`SLC17A8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       19.30        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 
       71.34        11.74        30.08        62.86        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
       22.95         5.52         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       26.07        24.10        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
             0.39              0.10 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
            79.46            173.79 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
           20.055            17.880 
[1] "0.4 - 79.5 (20.1)"  "0.1 - 173.8 (17.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED"   "SLC17A8 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED"   "SLC17A8 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED"   "SLC17A8 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
[1] "hr=" "1.3"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC17A8 MUTATED      4    8
  SLC17A8 WILD-TYPE   43  123
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  FEMALE               4                43
  MALE                 8               123
D57V4, continuous
D57V5, multiclass
                                                             clus
vv                                                            SLC17A8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              10
                                                             clus
vv                                                            SLC17A8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               162
D57V6, multiclass
    clus
vv   SLC17A8 MUTATED SLC17A8 WILD-TYPE
  T1               5                31
  T2               4               112
  T3               2                12
  T4               1                11
D57V7, multiclass
    clus
vv   SLC17A8 MUTATED SLC17A8 WILD-TYPE
  N0               8               109
  N1               3                36
  N2               1                16
  N3               0                 5
D57V8, multiclass
    clus
vv   SLC17A8 MUTATED SLC17A8 WILD-TYPE
  M0              11               154
  M1               0                 3
  MX               0                 6
D57V9, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  I                    7                90
  II                   2                36
  III+IV               2                39
D57V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC17A8 MUTATED      0   12
  SLC17A8 WILD-TYPE    4  162
     clus
vv    SLC17A8 MUTATED SLC17A8 WILD-TYPE
  NO                0                 4
  YES              12               162
D57V11, continuous
D57V12, continuous
D57V13, multiclass
                                             clus
vv                                            SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                38
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       1                 7
D57V14, continuous

Clustering(58) Variable = ZFP42 MUTATION ANALYSIS
D58V1, survival
                 sevent
clus2              0  1
  ZFP42 MUTATED    6  1
  ZFP42 WILD-TYPE 91 69
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              7             160 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              1              69 
$`ZFP42 MUTATED`
TCGA-18-5592 TCGA-22-5471 TCGA-34-2608 TCGA-37-4141 TCGA-60-2708 TCGA-66-2734 
        3.02        31.69        32.84         0.39        68.45        43.10 
TCGA-66-2759 
       25.02 

$`ZFP42 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        3.95         0.43         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        10.22        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  ZFP42 MUTATED ZFP42 WILD-TYPE 
           0.39            0.10 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
          68.45          173.79 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
          31.69           16.78 
[1] "0.4 - 68.5 (31.7)"  "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZFP42 WILD-TYPE"   "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZFP42 WILD-TYPE"   "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZFP42 WILD-TYPE"   "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
[1] "hr=" "3.5"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP42 MUTATED      3    5
  ZFP42 WILD-TYPE   44  126
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D58V4, continuous
D58V5, multiclass
                                                             clus
vv                                                            ZFP42 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            ZFP42 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
D58V6, multiclass
    clus
vv   ZFP42 MUTATED ZFP42 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             1              13
  T4             1              11
D58V7, multiclass
    clus
vv   ZFP42 MUTATED ZFP42 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
D58V8, multiclass
    clus
vv   ZFP42 MUTATED ZFP42 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
D58V9, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  I                  4              93
  II                 3              35
  III+IV             1              40
D58V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP42 MUTATED      1    7
  ZFP42 WILD-TYPE    3  167
     clus
vv    ZFP42 MUTATED ZFP42 WILD-TYPE
  NO              1               3
  YES             7             167
D58V11, continuous
D58V12, continuous
D58V13, multiclass
                                             clus
vv                                            ZFP42 MUTATED ZFP42 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D58V14, continuous

Clustering(59) Variable = TRHDE MUTATION ANALYSIS
D59V1, survival
                 sevent
clus2              0  1
  TRHDE MUTATED   11  3
  TRHDE WILD-TYPE 86 67
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             153 
  TRHDE MUTATED TRHDE WILD-TYPE 
              3              67 
$`TRHDE MUTATED`
TCGA-18-3409 TCGA-18-3417 TCGA-21-5786 TCGA-22-5473 TCGA-33-4586 TCGA-37-3783 
       79.46        24.92        21.57        63.52        14.07         3.95 
TCGA-37-4141 TCGA-66-2754 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.39         2.01         0.99         2.01         1.02         2.01 
TCGA-66-2782 TCGA-66-2787 
       12.00        40.01 

$`TRHDE WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         4.96         0.43         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        24.95         1.94        25.97        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  TRHDE MUTATED TRHDE WILD-TYPE 
           0.39            0.10 
  TRHDE MUTATED TRHDE WILD-TYPE 
          79.46          173.79 
  TRHDE MUTATED TRHDE WILD-TYPE 
          7.975          18.840 
[1] "0.4 - 79.5 (8.0)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
[1] "hr=" "1.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRHDE MUTATED      2   12
  TRHDE WILD-TYPE   45  119
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  FEMALE             2              45
  MALE              12             119
D59V4, continuous
[1] "Remove cluster labels:" "TRHDE MUTATED"         
clus
  TRHDE MUTATED TRHDE WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
D59V5, multiclass
                                                             clus
vv                                                            TRHDE MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            TRHDE WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
D59V6, multiclass
    clus
vv   TRHDE MUTATED TRHDE WILD-TYPE
  T1             3              33
  T2             8             108
  T3             3              11
  T4             0              12
D59V7, multiclass
    clus
vv   TRHDE MUTATED TRHDE WILD-TYPE
  N0             8             109
  N1             1              38
  N2             4              13
  N3             1               4
D59V8, multiclass
    clus
vv   TRHDE MUTATED TRHDE WILD-TYPE
  M0            13             152
  M1             1               2
  MX             0               6
D59V9, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  I                  6              91
  II                 1              37
  III+IV             6              35
D59V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRHDE MUTATED      0   14
  TRHDE WILD-TYPE    4  160
     clus
vv    TRHDE MUTATED TRHDE WILD-TYPE
  NO              0               4
  YES            14             160
D59V11, continuous
D59V12, continuous
D59V13, multiclass
                                             clus
vv                                            TRHDE MUTATED TRHDE WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D59V14, continuous

Clustering(60) Variable = OR2T8 MUTATION ANALYSIS
D60V1, survival
                 sevent
clus2              0  1
  OR2T8 MUTATED    2  6
  OR2T8 WILD-TYPE 95 64
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             159 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              6              64 
$`OR2T8 MUTATED`
TCGA-18-3412 TCGA-18-4086 TCGA-21-5782 TCGA-22-4599 TCGA-33-4538 TCGA-34-2600 
       11.34         2.79        31.63        38.17        97.94        61.61 
TCGA-37-5819 TCGA-60-2722 
        3.39        24.10 

$`OR2T8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        24.13        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       16.60        82.98       114.05        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 
      141.34        14.07        19.76         2.63        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2T8 MUTATED OR2T8 WILD-TYPE 
           2.79            0.10 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
          97.94          173.79 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
         27.865          16.960 
[1] "2.8 - 97.9 (27.9)"  "0.1 - 173.8 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
[1] "hr=" "1.5"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      3    5
  OR2T8 WILD-TYPE   44  126
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D60V4, continuous
D60V5, multiclass
                                                             clus
vv                                                            OR2T8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            OR2T8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
D60V6, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  T1             1              35
  T2             7             109
  T3             0              14
  T4             0              12
D60V7, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  N0             5             112
  N1             1              38
  N2             2              15
  N3             0               5
D60V8, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
D60V9, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             2              39
D60V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      0    8
  OR2T8 WILD-TYPE    4  166
     clus
vv    OR2T8 MUTATED OR2T8 WILD-TYPE
  NO              0               4
  YES             8             166
D60V11, continuous
D60V12, continuous
D60V13, multiclass
                                             clus
vv                                            OR2T8 MUTATED OR2T8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D60V14, continuous
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5787      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4593 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4607      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5480      TCGA-22-5482      TCGA-22-5492 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-34-5240      TCGA-34-5241      TCGA-37-4133 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-4135      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-2578      TCGA-43-3394      TCGA-43-3920 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6143      TCGA-43-6647      TCGA-43-6770      TCGA-43-6771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-1622      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2715 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2719      TCGA-60-2720      TCGA-60-2721      TCGA-60-2723 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-6202 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 

Clustering(61) Variable = UGT3A2 MUTATION ANALYSIS
D61V1, survival
                  sevent
clus2               0  1
  UGT3A2 MUTATED    6  3
  UGT3A2 WILD-TYPE 91 67
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
               9              158 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
               3               67 
$`UGT3A2 MUTATED`
TCGA-18-3411 TCGA-18-3421 TCGA-21-1081 TCGA-22-4613 TCGA-34-5240 TCGA-56-5897 
       46.52        43.76         9.30        11.77         7.73         0.10 
TCGA-66-2785 TCGA-66-2789 TCGA-66-2792 
        1.94         4.04        30.02 

$`UGT3A2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       13.02        59.51        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       19.30        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        0.39         2.07        28.93         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
            0.10             0.36 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
           46.52           173.79 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
            9.30            18.46 
[1] "0.1 - 46.5 (9.3)"   "0.4 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
[1] "hr=" "1.2"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT3A2 MUTATED      3    7
  UGT3A2 WILD-TYPE   44  124
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  FEMALE              3               44
  MALE                7              124
D61V4, continuous
[1] "Remove cluster labels:" "UGT3A2 MUTATED"        
clus
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
D61V5, multiclass
                                                             clus
vv                                                            UGT3A2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            UGT3A2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
D61V6, multiclass
    clus
vv   UGT3A2 MUTATED UGT3A2 WILD-TYPE
  T1              3               33
  T2              7              109
  T3              0               14
  T4              0               12
D61V7, multiclass
    clus
vv   UGT3A2 MUTATED UGT3A2 WILD-TYPE
  N0              4              113
  N1              4               35
  N2              1               16
  N3              1                4
D61V8, multiclass
    clus
vv   UGT3A2 MUTATED UGT3A2 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              1                5
D61V9, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  I                   4               93
  II                  4               34
  III+IV              2               39
D61V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT3A2 MUTATED      0   10
  UGT3A2 WILD-TYPE    4  164
     clus
vv    UGT3A2 MUTATED UGT3A2 WILD-TYPE
  NO               0                4
  YES             10              164
D61V11, continuous
D61V12, continuous
D61V13, multiclass
                                             clus
vv                                            UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D61V14, continuous

Clustering(62) Variable = GBA3 MUTATION ANALYSIS
D62V1, survival
                sevent
clus2             0  1
  GBA3 MUTATED    6  2
  GBA3 WILD-TYPE 91 68
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            159 
  GBA3 MUTATED GBA3 WILD-TYPE 
             2             68 
$`GBA3 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-18-4086 TCGA-21-5786 TCGA-39-5037 TCGA-43-5668 
       79.46        28.34         2.79        21.57         0.79         8.48 
TCGA-51-4080 TCGA-66-2757 
        0.39         0.99 

$`GBA3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 
       34.78        15.55         9.30        31.63        29.85        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.42         9.96         0.95         0.59         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  GBA3 MUTATED GBA3 WILD-TYPE 
          0.39           0.10 
  GBA3 MUTATED GBA3 WILD-TYPE 
         79.46         173.79 
  GBA3 MUTATED GBA3 WILD-TYPE 
         5.635         18.080 
[1] "0.4 - 79.5 (5.6)"   "0.1 - 173.8 (18.1)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
[1] "hr=" "1.2"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      1    8
  GBA3 WILD-TYPE   46  123
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  FEMALE            1             46
  MALE              8            123
D62V4, continuous
D62V5, multiclass
                                                             clus
vv                                                            GBA3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            GBA3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
D62V6, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  T1            4             32
  T2            4            112
  T3            0             14
  T4            1             11
D62V7, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  N0            5            112
  N1            4             35
  N2            0             17
  N3            0              5
D62V8, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  M0            8            157
  M1            0              3
  MX            0              6
D62V9, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  I                 4             93
  II                3             35
  III+IV            1             40
D62V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      0    9
  GBA3 WILD-TYPE    4  165
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  NO             0              4
  YES            9            165
D62V11, continuous
D62V12, continuous
D62V13, multiclass
                                             clus
vv                                            GBA3 MUTATED GBA3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             40
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D62V14, continuous

Clustering(63) Variable = OR5M9 MUTATION ANALYSIS
D63V1, survival
                 sevent
clus2              0  1
  OR5M9 MUTATED    2  4
  OR5M9 WILD-TYPE 95 66
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              6             161 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              4              66 
$`OR5M9 MUTATED`
TCGA-21-5786 TCGA-22-4593 TCGA-22-4613 TCGA-43-6771 TCGA-66-2742 TCGA-66-2789 
       21.57        35.08        11.77         5.42        21.07         4.04 

$`OR5M9 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        20.45        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        7.00         6.02         2.79         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  OR5M9 MUTATED OR5M9 WILD-TYPE 
           4.04            0.10 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
          35.08          173.79 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
          16.42           17.88 
[1] "4.0 - 35.1 (16.4)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
[1] "hr=" "2.2"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5M9 MUTATED      1    7
  OR5M9 WILD-TYPE   46  124
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  FEMALE             1              46
  MALE               7             124
D63V4, continuous
[1] "Remove cluster labels:" "OR5M9 MUTATED"         
clus
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
D63V5, multiclass
                                                             clus
vv                                                            OR5M9 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            OR5M9 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
D63V6, multiclass
    clus
vv   OR5M9 MUTATED OR5M9 WILD-TYPE
  T1             2              34
  T2             5             111
  T3             0              14
  T4             1              11
D63V7, multiclass
    clus
vv   OR5M9 MUTATED OR5M9 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             0              17
  N3             1               4
D63V8, multiclass
    clus
vv   OR5M9 MUTATED OR5M9 WILD-TYPE
  M0             6             159
  M1             1               2
  MX             1               5
D63V9, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             2              39
D63V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5M9 MUTATED      0    8
  OR5M9 WILD-TYPE    4  166
     clus
vv    OR5M9 MUTATED OR5M9 WILD-TYPE
  NO              0               4
  YES             8             166
D63V11, continuous
D63V12, continuous
D63V13, multiclass
                                             clus
vv                                            OR5M9 MUTATED OR5M9 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D63V14, continuous

Clustering(64) Variable = OR2AK2 MUTATION ANALYSIS
D64V1, survival
                  sevent
clus2               0  1
  OR2AK2 MUTATED    5  3
  OR2AK2 WILD-TYPE 92 67
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              159 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               3               67 
$`OR2AK2 MUTATED`
TCGA-18-5595 TCGA-21-5786 TCGA-33-4566 TCGA-37-4141 TCGA-56-6545 TCGA-60-2723 
       27.16        21.57       173.79         0.39         2.04        22.78 
TCGA-66-2789 TCGA-85-6560 
        4.04         0.36 

$`OR2AK2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 
       43.76         6.15         2.79        90.51         3.02       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        3.95         0.43         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 
        0.39         0.39         2.07        28.93         0.10         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       24.10         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
            0.36             0.10 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
          173.79           141.34 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
          12.805           17.880 
[1] "0.4 - 173.8 (12.8)" "0.1 - 141.3 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
[1] "hr=" "1.5"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2AK2 MUTATED      3    5
  OR2AK2 WILD-TYPE   44  126
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  FEMALE              3               44
  MALE                5              126
D64V4, continuous
D64V5, multiclass
                                                             clus
vv                                                            OR2AK2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            OR2AK2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
D64V6, multiclass
    clus
vv   OR2AK2 MUTATED OR2AK2 WILD-TYPE
  T1              2               34
  T2              6              110
  T3              0               14
  T4              0               12
D64V7, multiclass
    clus
vv   OR2AK2 MUTATED OR2AK2 WILD-TYPE
  N0              6              111
  N1              1               38
  N2              0               17
  N3              1                4
D64V8, multiclass
    clus
vv   OR2AK2 MUTATED OR2AK2 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
D64V9, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  I                   6               91
  II                  0               38
  III+IV              2               39
D64V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2AK2 MUTATED      0    8
  OR2AK2 WILD-TYPE    4  166
     clus
vv    OR2AK2 MUTATED OR2AK2 WILD-TYPE
  NO               0                4
  YES              8              166
D64V11, continuous
D64V12, continuous
D64V13, multiclass
                                             clus
vv                                            OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      2                6
D64V14, continuous

Clustering(65) Variable = ZIC1 MUTATION ANALYSIS
D65V1, survival
                sevent
clus2             0  1
  ZIC1 MUTATED   10  5
  ZIC1 WILD-TYPE 87 65
  ZIC1 MUTATED ZIC1 WILD-TYPE 
            15            152 
  ZIC1 MUTATED ZIC1 WILD-TYPE 
             5             65 
$`ZIC1 MUTATED`
TCGA-21-1077 TCGA-22-4599 TCGA-22-5473 TCGA-37-4133 TCGA-43-3920 TCGA-43-6771 
       34.78        38.17        63.52         7.82        18.84         5.42 
TCGA-56-6546 TCGA-60-2709 TCGA-60-2724 TCGA-60-2726 TCGA-66-2759 TCGA-66-2763 
        1.02        49.48         1.22        11.77        25.02         0.99 
TCGA-66-2766 TCGA-66-2770 TCGA-66-2783 
        1.02        23.01        24.95 

$`ZIC1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
      115.59        46.88        60.89        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        3.95         0.43         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57         8.48         7.00         6.02 
TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.79         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2698 TCGA-60-2707 
        2.07        28.93         0.10         2.04        10.22        21.70 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       68.45        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 
       30.61         3.16        26.07        24.10        22.78        23.64 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
        0.99         0.99        20.98         2.01         2.01         2.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  ZIC1 MUTATED ZIC1 WILD-TYPE 
          0.99           0.10 
  ZIC1 MUTATED ZIC1 WILD-TYPE 
         63.52         173.79 
  ZIC1 MUTATED ZIC1 WILD-TYPE 
         18.84          17.42 
[1] "1.0 - 63.5 (18.8)"  "0.1 - 173.8 (17.4)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "ZIC1 MUTATED" "ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZIC1 WILD-TYPE"   "ZIC1 MUTATED" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" "ZIC1 WILD-TYPE" 
[1] "hr=" "1"  
D65V2, continuous
D65V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIC1 MUTATED      2   14
  ZIC1 WILD-TYPE   45  117
        clus
vv       ZIC1 MUTATED ZIC1 WILD-TYPE
  FEMALE            2             45
  MALE             14            117
D65V4, continuous
D65V5, multiclass
                                                             clus
vv                                                            ZIC1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           16
                                                             clus
vv                                                            ZIC1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            156
D65V6, multiclass
    clus
vv   ZIC1 MUTATED ZIC1 WILD-TYPE
  T1            0             36
  T2           13            103
  T3            2             12
  T4            1             11
D65V7, multiclass
    clus
vv   ZIC1 MUTATED ZIC1 WILD-TYPE
  N0           10            107
  N1            3             36
  N2            2             15
  N3            1              4
D65V8, multiclass
    clus
vv   ZIC1 MUTATED ZIC1 WILD-TYPE
  M0           13            152
  M1            0              3
  MX            3              3
D65V9, multiclass
        clus
vv       ZIC1 MUTATED ZIC1 WILD-TYPE
  I                 7             90
  II                3             35
  III+IV            5             36
D65V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZIC1 MUTATED      0   16
  ZIC1 WILD-TYPE    4  158
     clus
vv    ZIC1 MUTATED ZIC1 WILD-TYPE
  NO             0              4
  YES           16            158
D65V11, continuous
D65V12, continuous
D65V13, multiclass
                                             clus
vv                                            ZIC1 MUTATED ZIC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            9             85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5             38
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D65V14, continuous

Clustering(66) Variable = PSG6 MUTATION ANALYSIS
D66V1, survival
                sevent
clus2             0  1
  PSG6 MUTATED    5  4
  PSG6 WILD-TYPE 92 66
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            158 
  PSG6 MUTATED PSG6 WILD-TYPE 
             4             66 
$`PSG6 MUTATED`
TCGA-22-1011 TCGA-33-4566 TCGA-37-5819 TCGA-39-5037 TCGA-46-3768 TCGA-60-2709 
        1.74       173.79         3.39         0.79         9.96        49.48 
TCGA-66-2756 TCGA-66-2771 TCGA-66-2791 
        0.99        19.00         5.03 

$`PSG6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.02         2.79         5.42         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       10.22        21.70        68.45        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        4.04        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  PSG6 MUTATED PSG6 WILD-TYPE 
          0.79           0.10 
  PSG6 MUTATED PSG6 WILD-TYPE 
        173.79         141.34 
  PSG6 MUTATED PSG6 WILD-TYPE 
          5.03          18.46 
[1] "0.8 - 173.8 (5.0)"  "0.1 - 141.3 (18.5)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
[1] "hr=" "1"  
D66V2, continuous
D66V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      0    9
  PSG6 WILD-TYPE   47  122
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  FEMALE            0             47
  MALE              9            122
D66V4, continuous
[1] "Remove cluster labels:" "PSG6 MUTATED"          
clus
  PSG6 MUTATED PSG6 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-34-5234     TCGA-37-4133     TCGA-37-4135 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
D66V5, multiclass
                                                             clus
vv                                                            PSG6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            9
                                                             clus
vv                                                            PSG6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            163
D66V6, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  T1            1             35
  T2            6            110
  T3            1             13
  T4            1             11
D66V7, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  N0            4            113
  N1            3             36
  N2            1             16
  N3            1              4
D66V8, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  M0            8            157
  M1            0              3
  MX            1              5
D66V9, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  I                 3             94
  II                2             36
  III+IV            4             37
D66V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      0    9
  PSG6 WILD-TYPE    4  165
     clus
vv    PSG6 MUTATED PSG6 WILD-TYPE
  NO             0              4
  YES            9            165
D66V11, continuous
D66V12, continuous
D66V13, multiclass
                                             clus
vv                                            PSG6 MUTATED PSG6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             42
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0              8
D66V14, continuous

Clustering(67) Variable = GABRA2 MUTATION ANALYSIS
D67V1, survival
                  sevent
clus2               0  1
  GABRA2 MUTATED    9  2
  GABRA2 WILD-TYPE 88 68
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              11              156 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
               2               68 
$`GABRA2 MUTATED`
TCGA-18-3409 TCGA-21-1081 TCGA-21-5786 TCGA-34-5231 TCGA-34-5232 TCGA-60-2698 
       79.46         9.30        21.57        50.24        51.78        10.22 
TCGA-66-2744 TCGA-66-2757 TCGA-66-2777 TCGA-66-2783 TCGA-66-2787 
        0.99         0.99         2.01        24.95        40.01 

$`GABRA2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 
       46.88        60.89        34.78        15.55        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       61.61        32.84        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  GABRA2 MUTATED GABRA2 WILD-TYPE 
            0.99             0.10 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
           79.46           173.79 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
           21.57            17.42 
[1] "1.0 - 79.5 (21.6)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
[1] "hr=" "2.4"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA2 MUTATED      2   10
  GABRA2 WILD-TYPE   45  121
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  FEMALE              2               45
  MALE               10              121
D67V4, continuous
[1] "Remove cluster labels:" "GABRA2 MUTATED"        
clus
  GABRA2 MUTATED GABRA2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-34-5234       TCGA-37-4133       TCGA-37-4135 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
D67V5, multiclass
                                                             clus
vv                                                            GABRA2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             11
                                                             clus
vv                                                            GABRA2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              161
D67V6, multiclass
    clus
vv   GABRA2 MUTATED GABRA2 WILD-TYPE
  T1              5               31
  T2              7              109
  T3              0               14
  T4              0               12
D67V7, multiclass
    clus
vv   GABRA2 MUTATED GABRA2 WILD-TYPE
  N0              7              110
  N1              4               35
  N2              0               17
  N3              1                4
D67V8, multiclass
    clus
vv   GABRA2 MUTATED GABRA2 WILD-TYPE
  M0             12              153
  M1              0                3
  MX              0                6
D67V9, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  I                   5               92
  II                  5               33
  III+IV              1               40
D67V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA2 MUTATED      0   12
  GABRA2 WILD-TYPE    4  162
     clus
vv    GABRA2 MUTATED GABRA2 WILD-TYPE
  NO               0                4
  YES             12              162
D67V11, continuous
D67V12, continuous
D67V13, multiclass
                                             clus
vv                                            GABRA2 MUTATED GABRA2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1                7
D67V14, continuous

Clustering(68) Variable = RTN1 MUTATION ANALYSIS
D68V1, survival
                sevent
clus2             0  1
  RTN1 MUTATED    6  4
  RTN1 WILD-TYPE 91 66
  RTN1 MUTATED RTN1 WILD-TYPE 
            10            157 
  RTN1 MUTATED RTN1 WILD-TYPE 
             4             66 
$`RTN1 MUTATED`
TCGA-18-3409 TCGA-22-5482 TCGA-33-4566 TCGA-33-4583 TCGA-39-5019 TCGA-43-6143 
       79.46        11.74       173.79       141.34        44.71         7.00 
TCGA-43-6647 TCGA-60-2698 TCGA-66-2754 TCGA-66-2789 
        6.02        10.22         2.01         4.04 

$`RTN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 
       63.52        14.60        44.22         0.79        71.34        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
       43.10       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6770 TCGA-43-6771 
       18.08        11.57        18.84         8.48         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 
       24.95         1.94        25.97        40.01        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  RTN1 MUTATED RTN1 WILD-TYPE 
          2.01           0.10 
  RTN1 MUTATED RTN1 WILD-TYPE 
        173.79         115.59 
  RTN1 MUTATED RTN1 WILD-TYPE 
         10.98          18.08 
[1] "2.0 - 173.8 (11.0)" "0.1 - 115.6 (18.1)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
[1] "hr=" "2.1"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RTN1 MUTATED      1   11
  RTN1 WILD-TYPE   46  120
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  FEMALE            1             46
  MALE             11            120
D68V4, continuous
[1] "Remove cluster labels:" "RTN1 MUTATED"          
clus
  RTN1 MUTATED RTN1 WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
D68V5, multiclass
                                                             clus
vv                                                            RTN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           10
                                                             clus
vv                                                            RTN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            162
D68V6, multiclass
    clus
vv   RTN1 MUTATED RTN1 WILD-TYPE
  T1            3             33
  T2            8            108
  T3            0             14
  T4            1             11
D68V7, multiclass
    clus
vv   RTN1 MUTATED RTN1 WILD-TYPE
  N0            8            109
  N1            2             37
  N2            1             16
  N3            1              4
D68V8, multiclass
    clus
vv   RTN1 MUTATED RTN1 WILD-TYPE
  M0           11            154
  M1            0              3
  MX            1              5
D68V9, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  I                 5             92
  II                4             34
  III+IV            2             39
D68V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  RTN1 MUTATED      0   12
  RTN1 WILD-TYPE    4  162
     clus
vv    RTN1 MUTATED RTN1 WILD-TYPE
  NO             0              4
  YES           12            162
D68V11, continuous
D68V12, continuous
D68V13, multiclass
                                             clus
vv                                            RTN1 MUTATED RTN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            9             85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D68V14, continuous

Clustering(69) Variable = ZNF80 MUTATION ANALYSIS
D69V1, survival
                 sevent
clus2              0  1
  ZNF80 MUTATED    3  4
  ZNF80 WILD-TYPE 94 66
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             160 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              4              66 
$`ZNF80 MUTATED`
TCGA-18-3409 TCGA-22-4595 TCGA-37-3789 TCGA-39-5021 TCGA-56-1622 TCGA-66-2766 
       79.46        24.13         0.43        68.58        28.93         1.02 
TCGA-66-2791 
        5.03 

$`ZNF80 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        20.45        35.08        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         0.39         2.07         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.99        20.98        25.02         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  ZNF80 MUTATED ZNF80 WILD-TYPE 
           0.43            0.10 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
          79.46          173.79 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
          24.13           17.42 
[1] "0.4 - 79.5 (24.1)"  "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
[1] "hr=" "1.2"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF80 MUTATED      0    7
  ZNF80 WILD-TYPE   47  124
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  FEMALE             0              47
  MALE               7             124
D69V4, continuous
[1] "Remove cluster labels:" "ZNF80 MUTATED"         
clus
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
D69V5, multiclass
                                                             clus
vv                                                            ZNF80 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            ZNF80 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D69V6, multiclass
    clus
vv   ZNF80 MUTATED ZNF80 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             1              13
  T4             0              12
D69V7, multiclass
    clus
vv   ZNF80 MUTATED ZNF80 WILD-TYPE
  N0             4             113
  N1             0              39
  N2             2              15
  N3             1               4
D69V8, multiclass
    clus
vv   ZNF80 MUTATED ZNF80 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
D69V9, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  I                  3              94
  II                 0              38
  III+IV             3              38
D69V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF80 MUTATED      1    6
  ZNF80 WILD-TYPE    3  168
     clus
vv    ZNF80 MUTATED ZNF80 WILD-TYPE
  NO              1               3
  YES             6             168
D69V11, continuous
D69V12, continuous
D69V13, multiclass
                                             clus
vv                                            ZNF80 MUTATED ZNF80 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D69V14, continuous

Clustering(70) Variable = GPC5 MUTATION ANALYSIS
D70V1, survival
                sevent
clus2             0  1
  GPC5 MUTATED    9  2
  GPC5 WILD-TYPE 88 68
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            156 
  GPC5 MUTATED GPC5 WILD-TYPE 
             2             68 
$`GPC5 MUTATED`
TCGA-18-3409 TCGA-22-1016 TCGA-33-4532 TCGA-33-4583 TCGA-37-4133 TCGA-39-5016 
       79.46        27.02        82.98       141.34         7.82        74.07 
TCGA-43-3920 TCGA-60-2698 TCGA-66-2734 TCGA-66-2742 TCGA-66-2770 
       18.84        10.22        43.10        21.07        23.01 

$`GPC5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 
        0.43         6.81         0.39         3.39        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       23.64        11.77        16.96         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         2.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  GPC5 MUTATED GPC5 WILD-TYPE 
          7.82           0.10 
  GPC5 MUTATED GPC5 WILD-TYPE 
        141.34         173.79 
  GPC5 MUTATED GPC5 WILD-TYPE 
        27.020         15.565 
[1] "7.8 - 141.3 (27.0)" "0.1 - 173.8 (15.6)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
[1] "hr=" "4.4"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC5 MUTATED      1   10
  GPC5 WILD-TYPE   46  121
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  FEMALE            1             46
  MALE             10            121
D70V4, continuous
[1] "Remove cluster labels:" "GPC5 MUTATED"          
clus
  GPC5 MUTATED GPC5 WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-34-5234     TCGA-37-4135     TCGA-37-5819 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
D70V5, multiclass
                                                             clus
vv                                                            GPC5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            9
                                                             clus
vv                                                            GPC5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            163
D70V6, multiclass
    clus
vv   GPC5 MUTATED GPC5 WILD-TYPE
  T1            2             34
  T2            8            108
  T3            0             14
  T4            1             11
D70V7, multiclass
    clus
vv   GPC5 MUTATED GPC5 WILD-TYPE
  N0            8            109
  N1            3             36
  N2            0             17
  N3            0              5
D70V8, multiclass
    clus
vv   GPC5 MUTATED GPC5 WILD-TYPE
  M0           10            155
  M1            1              2
  MX            0              6
D70V9, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  I                 6             91
  II                2             36
  III+IV            2             39
D70V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC5 MUTATED      0   11
  GPC5 WILD-TYPE    4  163
     clus
vv    GPC5 MUTATED GPC5 WILD-TYPE
  NO             0              4
  YES           11            163
D70V11, continuous
D70V12, continuous
D70V13, multiclass
                                             clus
vv                                            GPC5 MUTATED GPC5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5             38
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D70V14, continuous

Clustering(71) Variable = CD5L MUTATION ANALYSIS
D71V1, survival
                sevent
clus2             0  1
  CD5L MUTATED    5  3
  CD5L WILD-TYPE 92 67
  CD5L MUTATED CD5L WILD-TYPE 
             8            159 
  CD5L MUTATED CD5L WILD-TYPE 
             3             67 
$`CD5L MUTATED`
TCGA-22-5472 TCGA-22-5473 TCGA-34-5231 TCGA-34-5236 TCGA-56-6546 TCGA-66-2742 
       64.90        63.52        50.24         9.04         1.02        21.07 
TCGA-66-2768 TCGA-66-2771 
        2.01        19.00 

$`CD5L WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
        2.63        61.61        32.84        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  CD5L MUTATED CD5L WILD-TYPE 
          1.02           0.10 
  CD5L MUTATED CD5L WILD-TYPE 
         64.90         173.79 
  CD5L MUTATED CD5L WILD-TYPE 
        20.035         16.960 
[1] "1.0 - 64.9 (20.0)"  "0.1 - 173.8 (17.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "CD5L MUTATED" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "CD5L MUTATED" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "CD5L MUTATED" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
[1] "hr=" "1.3"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      0    8
  CD5L WILD-TYPE   47  123
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  FEMALE            0             47
  MALE              8            123
D71V4, continuous
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5474     TCGA-22-5477 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5485 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5489     TCGA-22-5491     TCGA-22-5492     TCGA-34-5234 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" 
D71V5, multiclass
                                                             clus
vv                                                            CD5L MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            8
                                                             clus
vv                                                            CD5L WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            164
D71V6, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  T1            1             35
  T2            5            111
  T3            2             12
  T4            0             12
D71V7, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  N0            5            112
  N1            3             36
  N2            0             17
  N3            0              5
D71V8, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  M0            6            159
  M1            1              2
  MX            1              5
D71V9, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  I                 3             94
  II                3             35
  III+IV            1             40
D71V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      0    8
  CD5L WILD-TYPE    4  166
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  NO             0              4
  YES            8            166
D71V11, continuous
D71V12, continuous
D71V13, multiclass
                                             clus
vv                                            CD5L MUTATED CD5L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    2              6
D71V14, continuous

Clustering(72) Variable = OR52J3 MUTATION ANALYSIS
D72V1, survival
                  sevent
clus2               0  1
  OR52J3 MUTATED    3  4
  OR52J3 WILD-TYPE 94 66
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               7              160 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               4               66 
$`OR52J3 MUTATED`
TCGA-22-1002 TCGA-22-4595 TCGA-22-5478 TCGA-39-5016 TCGA-43-6143 TCGA-66-2727 
        4.31        24.13         0.79        74.07         7.00        16.96 
TCGA-66-2765 
        2.01 

$`OR52J3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 
       31.63        29.85        21.57        10.82         7.33         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        20.45        35.08        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 
       17.88        18.08        11.57        18.84         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       24.10        22.78         1.22        23.64        11.77        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR52J3 MUTATED OR52J3 WILD-TYPE 
            0.79             0.10 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
           74.07           173.79 
  OR52J3 MUTATED OR52J3 WILD-TYPE 
            7.00            18.46 
[1] "0.8 - 74.1 (7.0)"   "0.1 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR52J3 WILD-TYPE"   "OR52J3 MUTATED" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
[1] "hr=" "1.8"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52J3 MUTATED      1    6
  OR52J3 WILD-TYPE   46  125
        clus
vv       OR52J3 MUTATED OR52J3 WILD-TYPE
  FEMALE              1               46
  MALE                6              125
D72V4, continuous
[1] "Remove cluster labels:" "OR52J3 MUTATED"        
clus
  OR52J3 MUTATED OR52J3 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR52J3 WILD-TYPE" "OR52J3 WILD-TYPE" 
D72V5, multiclass
                                                             clus
vv                                                            OR52J3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              5
                                                             clus
vv                                                            OR52J3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              167
D72V6, multiclass
    clus
vv   OR52J3 MUTATED OR52J3 WILD-TYPE
  T1              1               35
  T2              5              111
  T3              1               13
  T4              0               12
D72V7, multiclass
    clus
vv   OR52J3 MUTATED OR52J3 WILD-TYPE
  N0              5              112
  N1              1               38
  N2              1               16
  N3              0                5
D72V8, multiclass
    clus
vv   OR52J3 MUTATED OR52J3 WILD-TYPE
  M0              6              159
  M1              0                3
  MX              0                6
D72V9, multiclass
        clus
vv       OR52J3 MUTATED OR52J3 WILD-TYPE
  I                   5               92
  II                  1               37
  III+IV              1               40
D72V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR52J3 MUTATED      1    6
  OR52J3 WILD-TYPE    3  168
     clus
vv    OR52J3 MUTATED OR52J3 WILD-TYPE
  NO               1                3
  YES              6              168
D72V11, continuous
D72V12, continuous
D72V13, multiclass
                                             clus
vv                                            OR52J3 MUTATED OR52J3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D72V14, continuous

Clustering(73) Variable = RPL10L MUTATION ANALYSIS
D73V1, survival
                  sevent
clus2               0  1
  RPL10L MUTATED    6  1
  RPL10L WILD-TYPE 91 69
  RPL10L MUTATED RPL10L WILD-TYPE 
               7              160 
  RPL10L MUTATED RPL10L WILD-TYPE 
               1               69 
$`RPL10L MUTATED`
TCGA-18-3415 TCGA-21-1070 TCGA-33-4566 TCGA-66-2754 TCGA-66-2766 TCGA-66-2768 
       59.51       115.59       173.79         2.01         1.02         2.01 
TCGA-66-2771 
       19.00 

$`RPL10L WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 
       11.77        16.96        43.10        21.07         0.99         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  RPL10L MUTATED RPL10L WILD-TYPE 
            1.02             0.10 
  RPL10L MUTATED RPL10L WILD-TYPE 
          173.79           141.34 
  RPL10L MUTATED RPL10L WILD-TYPE 
           19.00            17.42 
[1] "1.0 - 173.8 (19.0)" "0.1 - 141.3 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
  "RPL10L MUTATED" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
  "RPL10L MUTATED" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
  "RPL10L MUTATED" "RPL10L WILD-TYPE"   "RPL10L MUTATED" "RPL10L WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"RPL10L WILD-TYPE" "RPL10L WILD-TYPE" "RPL10L WILD-TYPE" 
[1] "hr="     "8.2e+07"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RPL10L MUTATED      1    6
  RPL10L WILD-TYPE   46  125
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  FEMALE              1               46
  MALE                6              125
D73V4, continuous
D73V5, multiclass
                                                             clus
vv                                                            RPL10L MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              7
                                                             clus
vv                                                            RPL10L WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              165
D73V6, multiclass
    clus
vv   RPL10L MUTATED RPL10L WILD-TYPE
  T1              0               36
  T2              6              110
  T3              1               13
  T4              0               12
D73V7, multiclass
    clus
vv   RPL10L MUTATED RPL10L WILD-TYPE
  N0              3              114
  N1              2               37
  N2              2               15
  N3              0                5
D73V8, multiclass
    clus
vv   RPL10L MUTATED RPL10L WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
D73V9, multiclass
        clus
vv       RPL10L MUTATED RPL10L WILD-TYPE
  I                   2               95
  II                  2               36
  III+IV              3               38
D73V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  RPL10L MUTATED      0    7
  RPL10L WILD-TYPE    4  167
     clus
vv    RPL10L MUTATED RPL10L WILD-TYPE
  NO               0                4
  YES              7              167
D73V11, continuous
D73V12, continuous
D73V13, multiclass
                                             clus
vv                                            RPL10L MUTATED RPL10L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1                7
D73V14, continuous

Clustering(74) Variable = FCAR MUTATION ANALYSIS
D74V1, survival
                sevent
clus2             0  1
  FCAR MUTATED    5  3
  FCAR WILD-TYPE 92 67
  FCAR MUTATED FCAR WILD-TYPE 
             8            159 
  FCAR MUTATED FCAR WILD-TYPE 
             3             67 
$`FCAR MUTATED`
TCGA-18-3409 TCGA-18-5592 TCGA-21-1077 TCGA-22-5482 TCGA-43-6143 TCGA-51-4081 
       79.46         3.02        34.78        11.74         7.00         2.07 
TCGA-60-2698 TCGA-66-2785 
       10.22         1.94 

$`FCAR WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        71.34        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 
       17.88        18.08        11.57        18.84         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        0.39        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  FCAR MUTATED FCAR WILD-TYPE 
          1.94           0.10 
  FCAR MUTATED FCAR WILD-TYPE 
         79.46         173.79 
  FCAR MUTATED FCAR WILD-TYPE 
          8.61          18.84 
[1] "1.9 - 79.5 (8.6)"   "0.1 - 173.8 (18.8)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
[1] "hr=" "1.2"
D74V2, continuous
D74V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FCAR MUTATED      0    8
  FCAR WILD-TYPE   47  123
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  FEMALE            0             47
  MALE              8            123
D74V4, continuous
[1] "Remove cluster labels:" "FCAR MUTATED"          
clus
  FCAR MUTATED FCAR WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" 
D74V5, multiclass
                                                             clus
vv                                                            FCAR MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            6
                                                             clus
vv                                                            FCAR WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            166
D74V6, multiclass
    clus
vv   FCAR MUTATED FCAR WILD-TYPE
  T1            1             35
  T2            6            110
  T3            1             13
  T4            0             12
D74V7, multiclass
    clus
vv   FCAR MUTATED FCAR WILD-TYPE
  N0            5            112
  N1            3             36
  N2            0             17
  N3            0              5
D74V8, multiclass
    clus
vv   FCAR MUTATED FCAR WILD-TYPE
  M0            8            157
  M1            0              3
  MX            0              6
D74V9, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  I                 3             94
  II                4             34
  III+IV            0             41
D74V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FCAR MUTATED      0    8
  FCAR WILD-TYPE    4  166
     clus
vv    FCAR MUTATED FCAR WILD-TYPE
  NO             0              4
  YES            8            166
D74V11, continuous
D74V12, continuous
D74V13, multiclass
                                             clus
vv                                            FCAR MUTATED FCAR WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D74V14, continuous
[1] "Remove cluster labels:" "FCAR MUTATED"          
clus
  FCAR MUTATED FCAR WILD-TYPE 
             2            103 
    TCGA-18-3406     TCGA-18-3417     TCGA-21-1078     TCGA-21-5782 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5786     TCGA-21-5787     TCGA-22-0944     TCGA-22-1002 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1011     TCGA-22-1012     TCGA-22-1016     TCGA-22-4591 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4607     TCGA-22-4613     TCGA-22-5472 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5473     TCGA-22-5474     TCGA-22-5480     TCGA-22-5492 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4533     TCGA-33-4547     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-34-5240     TCGA-34-5241     TCGA-37-4133 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-4135     TCGA-37-5819     TCGA-39-5021     TCGA-39-5022 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5024     TCGA-39-5027     TCGA-39-5028     TCGA-39-5029 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5030     TCGA-39-5031     TCGA-39-5035     TCGA-39-5036 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5037     TCGA-39-5039     TCGA-43-2578     TCGA-43-3394 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3920     TCGA-43-6647     TCGA-43-6770     TCGA-43-6771 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-1622     TCGA-56-5898     TCGA-56-6545     TCGA-56-6546 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2707     TCGA-60-2708     TCGA-60-2709     TCGA-60-2710 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2711     TCGA-60-2712     TCGA-60-2713     TCGA-60-2715 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2719     TCGA-60-2720     TCGA-60-2721     TCGA-60-2723 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-63-6202 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2727     TCGA-66-2734     TCGA-66-2742     TCGA-66-2744 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2754     TCGA-66-2755     TCGA-66-2756     TCGA-66-2757 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2758     TCGA-66-2759     TCGA-66-2763     TCGA-66-2765 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2766     TCGA-66-2767     TCGA-66-2770     TCGA-66-2771 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 

Clustering(75) Variable = OR2M7 MUTATION ANALYSIS
D75V1, survival
                 sevent
clus2              0  1
  OR2M7 MUTATED    6  2
  OR2M7 WILD-TYPE 91 68
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             159 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              2              68 
$`OR2M7 MUTATED`
TCGA-18-3409 TCGA-22-5471 TCGA-22-5473 TCGA-33-4532 TCGA-34-2596 TCGA-39-5024 
       79.46        31.69        63.52        82.98         2.63        70.03 
TCGA-60-2720 TCGA-66-2786 
        3.16        25.97 

$`OR2M7 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 
       34.75        13.12        19.30        11.77        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        14.07        19.76        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34        30.61        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95         1.94        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2M7 MUTATED OR2M7 WILD-TYPE 
           2.63            0.10 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
          82.98          173.79 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
         47.605          16.600 
[1] "2.6 - 83.0 (47.6)"  "0.1 - 173.8 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
[1] "hr=" "3"  
D75V2, continuous
D75V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      3    5
  OR2M7 WILD-TYPE   44  126
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D75V4, continuous
[1] "Remove cluster labels:" "OR2M7 MUTATED"         
clus
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
D75V5, multiclass
                                                             clus
vv                                                            OR2M7 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR2M7 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D75V6, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  T1             2              34
  T2             5             111
  T3             1              13
  T4             0              12
D75V7, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
D75V8, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
D75V9, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             1              40
D75V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      1    7
  OR2M7 WILD-TYPE    3  167
     clus
vv    OR2M7 MUTATED OR2M7 WILD-TYPE
  NO              1               3
  YES             7             167
D75V11, continuous
D75V12, continuous
D75V13, multiclass
                                             clus
vv                                            OR2M7 MUTATED OR2M7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D75V14, continuous

Clustering(76) Variable = OR10A4 MUTATION ANALYSIS
D76V1, survival
                  sevent
clus2               0  1
  OR10A4 MUTATED    4  4
  OR10A4 WILD-TYPE 93 66
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              159 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               4               66 
$`OR10A4 MUTATED`
TCGA-18-3411 TCGA-18-3419 TCGA-21-5787 TCGA-33-4566 TCGA-33-4586 TCGA-39-5036 
       46.52         1.61        10.82       173.79        14.07        35.64 
TCGA-60-2719 TCGA-66-2793 
       30.61        10.06 

$`OR10A4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        15.58         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
       22.98         4.04         5.03        30.02        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR10A4 MUTATED OR10A4 WILD-TYPE 
            1.61             0.10 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
          173.79           141.34 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
           22.34            17.88 
[1] "1.6 - 173.8 (22.3)" "0.1 - 141.3 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
[1] "hr=" "1.4"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A4 MUTATED      2    6
  OR10A4 WILD-TYPE   45  125
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  FEMALE              2               45
  MALE                6              125
D76V4, continuous
[1] "Remove cluster labels:" "OR10A4 MUTATED"        
clus
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4613 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5472       TCGA-22-5473       TCGA-22-5474       TCGA-22-5477 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
D76V5, multiclass
                                                             clus
vv                                                            OR10A4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            OR10A4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
D76V6, multiclass
    clus
vv   OR10A4 MUTATED OR10A4 WILD-TYPE
  T1              1               35
  T2              6              110
  T3              0               14
  T4              1               11
D76V7, multiclass
    clus
vv   OR10A4 MUTATED OR10A4 WILD-TYPE
  N0              3              114
  N1              2               37
  N2              3               14
  N3              0                5
D76V8, multiclass
    clus
vv   OR10A4 MUTATED OR10A4 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
D76V9, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  I                   3               94
  II                  1               37
  III+IV              4               37
D76V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A4 MUTATED      1    7
  OR10A4 WILD-TYPE    3  167
     clus
vv    OR10A4 MUTATED OR10A4 WILD-TYPE
  NO               1                3
  YES              7              167
D76V11, continuous
D76V12, continuous
D76V13, multiclass
                                             clus
vv                                            OR10A4 MUTATED OR10A4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D76V14, continuous

Clustering(77) Variable = C6ORF97 MUTATION ANALYSIS
D77V1, survival
                   sevent
clus2                0  1
  C6ORF97 MUTATED    6  6
  C6ORF97 WILD-TYPE 91 64
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
               12               155 
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
                6                64 
$`C6ORF97 MUTATED`
TCGA-18-3412 TCGA-21-5787 TCGA-33-4533 TCGA-33-4566 TCGA-34-5231 TCGA-34-5236 
       11.34        10.82       114.05       173.79        50.24         9.04 
TCGA-39-5024 TCGA-39-5030 TCGA-43-3920 TCGA-60-2698 TCGA-60-2710 TCGA-66-2785 
       70.03         1.94        18.84        10.22        55.40         1.94 

$`C6ORF97 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60        82.98        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       32.84        51.78        32.68        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 
       55.17        60.76         1.71        24.33        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 
       35.64         0.79        17.88        18.08        11.57         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 
        2.04         1.02        21.70        68.45        49.48        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
             1.94              0.10 
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
           173.79            141.34 
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
            15.09             17.88 
[1] "1.9 - 173.8 (15.1)" "0.1 - 141.3 (17.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE"   "C6ORF97 MUTATED" "C6ORF97 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
[1] "hr=" "1.5"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C6ORF97 MUTATED      4    8
  C6ORF97 WILD-TYPE   43  123
        clus
vv       C6ORF97 MUTATED C6ORF97 WILD-TYPE
  FEMALE               4                43
  MALE                 8               123
D77V4, continuous
[1] "Remove cluster labels:" "C6ORF97 MUTATED"       
clus
  C6ORF97 MUTATED C6ORF97 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-22-4591        TCGA-22-4593 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"C6ORF97 WILD-TYPE" "C6ORF97 WILD-TYPE" 
D77V5, multiclass
                                                             clus
vv                                                            C6ORF97 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              12
                                                             clus
vv                                                            C6ORF97 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               160
D77V6, multiclass
    clus
vv   C6ORF97 MUTATED C6ORF97 WILD-TYPE
  T1               2                34
  T2               9               107
  T3               1                13
  T4               0                12
D77V7, multiclass
    clus
vv   C6ORF97 MUTATED C6ORF97 WILD-TYPE
  N0               7               110
  N1               2                37
  N2               3                14
  N3               0                 5
D77V8, multiclass
    clus
vv   C6ORF97 MUTATED C6ORF97 WILD-TYPE
  M0              12               153
  M1               0                 3
  MX               0                 6
D77V9, multiclass
        clus
vv       C6ORF97 MUTATED C6ORF97 WILD-TYPE
  I                    6                91
  II                   3                35
  III+IV               3                38
D77V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C6ORF97 MUTATED      1   11
  C6ORF97 WILD-TYPE    3  163
     clus
vv    C6ORF97 MUTATED C6ORF97 WILD-TYPE
  NO                1                 3
  YES              11               163
D77V11, continuous
D77V12, continuous
D77V13, multiclass
                                             clus
vv                                            C6ORF97 MUTATED C6ORF97 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       1                 7
D77V14, continuous

Clustering(78) Variable = OR2T12 MUTATION ANALYSIS
D78V1, survival
                  sevent
clus2               0  1
  OR2T12 MUTATED    5  3
  OR2T12 WILD-TYPE 92 67
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              159 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               3               67 
$`OR2T12 MUTATED`
TCGA-18-3409 TCGA-18-4086 TCGA-18-5592 TCGA-21-5786 TCGA-22-5473 TCGA-34-5236 
       79.46         2.79         3.02        21.57        63.52         9.04 
TCGA-60-2713 TCGA-66-2777 
       47.87         2.01 

$`OR2T12 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        6.15        90.51        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 
       34.78        15.55         9.30        31.63        29.85        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       50.24        51.78        32.68        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         3.02        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2T12 MUTATED OR2T12 WILD-TYPE 
            2.01             0.10 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
           79.46           173.79 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
          15.305           17.880 
[1] "2.0 - 79.5 (15.3)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
[1] "hr=" "1.2"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T12 MUTATED      0    8
  OR2T12 WILD-TYPE   47  123
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  FEMALE              0               47
  MALE                8              123
D78V4, continuous
[1] "Remove cluster labels:" "OR2T12 MUTATED"        
clus
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5474 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
D78V5, multiclass
                                                             clus
vv                                                            OR2T12 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              7
                                                             clus
vv                                                            OR2T12 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              165
D78V6, multiclass
    clus
vv   OR2T12 MUTATED OR2T12 WILD-TYPE
  T1              1               35
  T2              4              112
  T3              3               11
  T4              0               12
D78V7, multiclass
    clus
vv   OR2T12 MUTATED OR2T12 WILD-TYPE
  N0              8              109
  N1              0               39
  N2              0               17
  N3              0                5
D78V8, multiclass
    clus
vv   OR2T12 MUTATED OR2T12 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
D78V9, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  I                   5               92
  II                  2               36
  III+IV              0               41
D78V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T12 MUTATED      0    8
  OR2T12 WILD-TYPE    4  166
     clus
vv    OR2T12 MUTATED OR2T12 WILD-TYPE
  NO               0                4
  YES              8              166
D78V11, continuous
D78V12, continuous
D78V13, multiclass
                                             clus
vv                                            OR2T12 MUTATED OR2T12 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D78V14, continuous

Clustering(79) Variable = APOBEC1 MUTATION ANALYSIS
D79V1, survival
                   sevent
clus2                0  1
  APOBEC1 MUTATED    3  3
  APOBEC1 WILD-TYPE 94 67
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                6               161 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                3                67 
$`APOBEC1 MUTATED`
TCGA-21-5787 TCGA-22-1016 TCGA-34-5236 TCGA-60-2723 TCGA-66-2785 TCGA-85-6560 
       10.82        27.02         9.04        22.78         1.94         0.36 

$`APOBEC1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.79 

  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
             0.36              0.10 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
            27.02            173.79 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
             9.93             18.08 
[1] "0.4 - 27.0 (9.9)"   "0.1 - 173.8 (18.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
[1] "hr=" "2.5"
D79V2, continuous
D79V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APOBEC1 MUTATED      1    6
  APOBEC1 WILD-TYPE   46  125
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  FEMALE               1                46
  MALE                 6               125
D79V4, continuous
[1] "Remove cluster labels:" "APOBEC1 MUTATED"       
clus
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-22-4591        TCGA-22-4593 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6723 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
D79V5, multiclass
                                                             clus
vv                                                            APOBEC1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               7
                                                             clus
vv                                                            APOBEC1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               165
D79V6, multiclass
    clus
vv   APOBEC1 MUTATED APOBEC1 WILD-TYPE
  T1               0                36
  T2               5               111
  T3               2                12
  T4               0                12
D79V7, multiclass
    clus
vv   APOBEC1 MUTATED APOBEC1 WILD-TYPE
  N0               4               113
  N1               2                37
  N2               1                16
  N3               0                 5
D79V8, multiclass
    clus
vv   APOBEC1 MUTATED APOBEC1 WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
D79V9, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  I                    3                94
  II                   1                37
  III+IV               3                38
D79V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APOBEC1 MUTATED      1    6
  APOBEC1 WILD-TYPE    3  168
     clus
vv    APOBEC1 MUTATED APOBEC1 WILD-TYPE
  NO                1                 3
  YES               6               168
D79V11, continuous
D79V12, continuous
D79V13, multiclass
                                             clus
vv                                            APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       1                 7
D79V14, continuous

Clustering(80) Variable = C8ORF34 MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                0  1
  C8ORF34 MUTATED    5  2
  C8ORF34 WILD-TYPE 92 68
  C8ORF34 MUTATED C8ORF34 WILD-TYPE 
                7               160 
  C8ORF34 MUTATED C8ORF34 WILD-TYPE 
                2                68 
$`C8ORF34 MUTATED`
TCGA-18-3414 TCGA-18-3419 TCGA-22-5492 TCGA-34-5231 TCGA-34-5928 TCGA-39-5031 
       13.02         1.61        16.60        50.24         5.52        27.35 
TCGA-66-2787 
       40.01 

$`C8ORF34 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       11.34        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
        7.73        14.07        22.95         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  C8ORF34 MUTATED C8ORF34 WILD-TYPE 
             1.61              0.10 
  C8ORF34 MUTATED C8ORF34 WILD-TYPE 
            50.24            173.79 
  C8ORF34 MUTATED C8ORF34 WILD-TYPE 
            16.60             17.98 
[1] "1.6 - 50.2 (16.6)"  "0.1 - 173.8 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE"   "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "C8ORF34 MUTATED" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" "C8ORF34 WILD-TYPE" 
[1] "hr=" "1.3"
D80V2, continuous
D80V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C8ORF34 MUTATED      3    6
  C8ORF34 WILD-TYPE   44  125
        clus
vv       C8ORF34 MUTATED C8ORF34 WILD-TYPE
  FEMALE               3                44
  MALE                 6               125
D80V4, continuous
D80V5, multiclass
                                                             clus
vv                                                            C8ORF34 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               9
                                                             clus
vv                                                            C8ORF34 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               163
D80V6, multiclass
    clus
vv   C8ORF34 MUTATED C8ORF34 WILD-TYPE
  T1               4                32
  T2               4               112
  T3               0                14
  T4               1                11
D80V7, multiclass
    clus
vv   C8ORF34 MUTATED C8ORF34 WILD-TYPE
  N0               5               112
  N1               3                36
  N2               1                16
  N3               0                 5
D80V8, multiclass
    clus
vv   C8ORF34 MUTATED C8ORF34 WILD-TYPE
  M0               8               157
  M1               1                 2
  MX               0                 6
D80V9, multiclass
        clus
vv       C8ORF34 MUTATED C8ORF34 WILD-TYPE
  I                    5                92
  II                   2                36
  III+IV               2                39
D80V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C8ORF34 MUTATED      0    9
  C8ORF34 WILD-TYPE    4  165
     clus
vv    C8ORF34 MUTATED C8ORF34 WILD-TYPE
  NO                0                 4
  YES               9               165
D80V11, continuous
D80V12, continuous
D80V13, multiclass
                                             clus
vv                                            C8ORF34 MUTATED C8ORF34 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6                88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       1                 7
D80V14, continuous

Clustering(81) Variable = PRR23B MUTATION ANALYSIS
D81V1, survival
                  sevent
clus2               0  1
  PRR23B MUTATED    6  2
  PRR23B WILD-TYPE 91 68
  PRR23B MUTATED PRR23B WILD-TYPE 
               8              159 
  PRR23B MUTATED PRR23B WILD-TYPE 
               2               68 
$`PRR23B MUTATED`
TCGA-21-5782 TCGA-33-4533 TCGA-33-4583 TCGA-39-5019 TCGA-60-2723 TCGA-66-2755 
       31.63       114.05       141.34        44.71        22.78         0.92 
TCGA-66-2763 TCGA-66-2782 
        0.99        12.00 

$`PRR23B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 
       30.08        62.86        56.32        16.60        82.98        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        24.10         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  PRR23B MUTATED PRR23B WILD-TYPE 
            0.92             0.10 
  PRR23B MUTATED PRR23B WILD-TYPE 
          141.34           173.79 
  PRR23B MUTATED PRR23B WILD-TYPE 
          27.205           16.960 
[1] "0.9 - 141.3 (27.2)" "0.1 - 173.8 (17.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
[1] "hr=" "2.8"
D81V2, continuous
D81V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PRR23B MUTATED      4    5
  PRR23B WILD-TYPE   43  126
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  FEMALE              4               43
  MALE                5              126
D81V4, continuous
[1] "Remove cluster labels:" "PRR23B MUTATED"        
clus
  PRR23B MUTATED PRR23B WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5787       TCGA-22-4591       TCGA-22-4593 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
D81V5, multiclass
                                                             clus
vv                                                            PRR23B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            PRR23B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
D81V6, multiclass
    clus
vv   PRR23B MUTATED PRR23B WILD-TYPE
  T1              1               35
  T2              6              110
  T3              1               13
  T4              1               11
D81V7, multiclass
    clus
vv   PRR23B MUTATED PRR23B WILD-TYPE
  N0              9              108
  N1              0               39
  N2              0               17
  N3              0                5
D81V8, multiclass
    clus
vv   PRR23B MUTATED PRR23B WILD-TYPE
  M0              9              156
  M1              0                3
  MX              0                6
D81V9, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  I                   7               90
  II                  2               36
  III+IV              0               41
D81V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PRR23B MUTATED      0    9
  PRR23B WILD-TYPE    4  165
     clus
vv    PRR23B MUTATED PRR23B WILD-TYPE
  NO               0                4
  YES              9              165
D81V11, continuous
D81V12, continuous
D81V13, multiclass
                                             clus
vv                                            PRR23B MUTATED PRR23B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D81V14, continuous

Clustering(82) Variable = OR2L13 MUTATION ANALYSIS
D82V1, survival
                  sevent
clus2               0  1
  OR2L13 MUTATED    4  4
  OR2L13 WILD-TYPE 93 66
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               8              159 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               4               66 
$`OR2L13 MUTATED`
TCGA-18-3409 TCGA-22-4591 TCGA-39-5022 TCGA-39-5027 TCGA-43-6771 TCGA-51-4080 
       79.46        20.45        55.17        60.76         5.42         0.39 
TCGA-60-2721 TCGA-66-2785 
       26.07         1.94 

$`OR2L13 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5028 
        3.39        74.07        44.71        68.58        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.02         2.79         9.96         0.95         0.59         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34        30.61         3.16        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2L13 MUTATED OR2L13 WILD-TYPE 
            0.39             0.10 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
           79.46           173.79 
  OR2L13 MUTATED OR2L13 WILD-TYPE 
           23.26            16.96 
[1] "0.4 - 79.5 (23.3)"  "0.1 - 173.8 (17.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
  "OR2L13 MUTATED" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE"   "OR2L13 MUTATED" "OR2L13 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
[1] "hr=" "1.1"
D82V2, continuous
D82V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED      1   10
  OR2L13 WILD-TYPE   46  121
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  FEMALE              1               46
  MALE               10              121
D82V4, continuous
[1] "Remove cluster labels:" "OR2L13 MUTATED"        
clus
  OR2L13 MUTATED OR2L13 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4593 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" "OR2L13 WILD-TYPE" 
D82V5, multiclass
                                                             clus
vv                                                            OR2L13 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            OR2L13 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
D82V6, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  T1              2               34
  T2              7              109
  T3              1               13
  T4              1               11
D82V7, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  N0              9              108
  N1              1               38
  N2              1               16
  N3              0                5
D82V8, multiclass
    clus
vv   OR2L13 MUTATED OR2L13 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              1                5
D82V9, multiclass
        clus
vv       OR2L13 MUTATED OR2L13 WILD-TYPE
  I                   7               90
  II                  1               37
  III+IV              2               39
D82V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2L13 MUTATED      0   11
  OR2L13 WILD-TYPE    4  163
     clus
vv    OR2L13 MUTATED OR2L13 WILD-TYPE
  NO               0                4
  YES             11              163
D82V11, continuous
D82V12, continuous
D82V13, multiclass
                                             clus
vv                                            OR2L13 MUTATED OR2L13 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D82V14, continuous

Clustering(83) Variable = CALN1 MUTATION ANALYSIS
D83V1, survival
                 sevent
clus2              0  1
  CALN1 MUTATED    6  2
  CALN1 WILD-TYPE 91 68
  CALN1 MUTATED CALN1 WILD-TYPE 
              8             159 
  CALN1 MUTATED CALN1 WILD-TYPE 
              2              68 
$`CALN1 MUTATED`
TCGA-18-4721 TCGA-21-1081 TCGA-22-5474 TCGA-37-5819 TCGA-39-5037 TCGA-66-2763 
       90.51         9.30        14.60         3.39         0.79         0.99 
TCGA-66-2768 TCGA-66-2783 
        2.01        24.95 

$`CALN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 
       46.88        60.89        34.78        15.55        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        3.95         0.43         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  CALN1 MUTATED CALN1 WILD-TYPE 
           0.79            0.10 
  CALN1 MUTATED CALN1 WILD-TYPE 
          90.51          173.79 
  CALN1 MUTATED CALN1 WILD-TYPE 
          6.345          18.840 
[1] "0.8 - 90.5 (6.3)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
[1] "hr=" "1.1"
D83V2, continuous
D83V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CALN1 MUTATED      1    7
  CALN1 WILD-TYPE   46  124
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  FEMALE             1              46
  MALE               7             124
D83V4, continuous
[1] "Remove cluster labels:" "CALN1 MUTATED"         
clus
  CALN1 MUTATED CALN1 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-60-2698 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
D83V5, multiclass
                                                             clus
vv                                                            CALN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            CALN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
D83V6, multiclass
    clus
vv   CALN1 MUTATED CALN1 WILD-TYPE
  T1             2              34
  T2             6             110
  T3             0              14
  T4             0              12
D83V7, multiclass
    clus
vv   CALN1 MUTATED CALN1 WILD-TYPE
  N0             3             114
  N1             3              36
  N2             1              16
  N3             1               4
D83V8, multiclass
    clus
vv   CALN1 MUTATED CALN1 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
D83V9, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  I                  3              94
  II                 3              35
  III+IV             2              39
D83V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CALN1 MUTATED      0    8
  CALN1 WILD-TYPE    4  166
     clus
vv    CALN1 MUTATED CALN1 WILD-TYPE
  NO              0               4
  YES             8             166
D83V11, continuous
D83V12, continuous
D83V13, multiclass
                                             clus
vv                                            CALN1 MUTATED CALN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D83V14, continuous

Clustering(84) Variable = RIMS2 MUTATION ANALYSIS
D84V1, survival
                 sevent
clus2              0  1
  RIMS2 MUTATED   14  6
  RIMS2 WILD-TYPE 83 64
  RIMS2 MUTATED RIMS2 WILD-TYPE 
             20             147 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
              6              64 
$`RIMS2 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-18-3417 TCGA-22-4593 TCGA-22-4599 TCGA-22-5471 
       79.46        28.34        24.92        35.08        38.17        31.69 
TCGA-33-4532 TCGA-33-4582 TCGA-37-5819 TCGA-39-5021 TCGA-39-5037 TCGA-43-5668 
       82.98       103.53         3.39        68.58         0.79         8.48 
TCGA-60-2720 TCGA-60-2723 TCGA-60-2726 TCGA-66-2756 TCGA-66-2759 TCGA-66-2782 
        3.16        22.78        11.77         0.99        25.02        12.00 
TCGA-66-2794 TCGA-85-6561 
       54.08         0.79 

$`RIMS2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        59.51         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       20.45        24.13        34.75        13.12        19.30        11.77 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 
       11.74        30.08        62.86        56.32        16.60       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       173.79       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       47.87        35.34        30.61        26.07        24.10         1.22 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       23.64        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.92         0.99        20.98         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  RIMS2 MUTATED RIMS2 WILD-TYPE 
           0.79            0.10 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
         103.53          173.79 
  RIMS2 MUTATED RIMS2 WILD-TYPE 
          24.97           16.60 
[1] "0.8 - 103.5 (25.0)" "0.1 - 173.8 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "RIMS2 MUTATED" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" "RIMS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"RIMS2 WILD-TYPE" "RIMS2 WILD-TYPE"   "RIMS2 MUTATED" 
[1] "hr=" "1.8"
D84V2, continuous
D84V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      3   19
  RIMS2 WILD-TYPE   44  112
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  FEMALE             3              44
  MALE              19             112
D84V4, continuous
D84V5, multiclass
                                                             clus
vv                                                            RIMS2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            21
                                                             clus
vv                                                            RIMS2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             151
D84V6, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  T1             4              32
  T2            14             102
  T3             2              12
  T4             2              10
D84V7, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  N0            13             104
  N1             6              33
  N2             3              14
  N3             0               5
D84V8, multiclass
    clus
vv   RIMS2 MUTATED RIMS2 WILD-TYPE
  M0            21             144
  M1             1               2
  MX             0               6
D84V9, multiclass
        clus
vv       RIMS2 MUTATED RIMS2 WILD-TYPE
  I                  7              90
  II                 8              30
  III+IV             6              35
D84V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RIMS2 MUTATED      1   21
  RIMS2 WILD-TYPE    3  153
     clus
vv    RIMS2 MUTATED RIMS2 WILD-TYPE
  NO              1               3
  YES            21             153
D84V11, continuous
D84V12, continuous
D84V13, multiclass
                                             clus
vv                                            RIMS2 MUTATED RIMS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            10              84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  7              36
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     1               7
D84V14, continuous

Clustering(85) Variable = RNF144A MUTATION ANALYSIS
D85V1, survival
                   sevent
clus2                0  1
  RNF144A MUTATED    4  3
  RNF144A WILD-TYPE 93 67
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               160 
  RNF144A MUTATED RNF144A WILD-TYPE 
                3                67 
$`RNF144A MUTATED`
TCGA-22-1016 TCGA-34-2600 TCGA-34-5236 TCGA-39-5019 TCGA-43-3394 TCGA-66-2756 
       27.02        61.61         9.04        44.71        11.57         0.99 
TCGA-66-2786 
       25.97 

$`RNF144A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        1.74        14.10        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       19.76         2.63        32.84        50.24        51.78        32.68 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
       12.03         3.98        12.00        24.95         1.94        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  RNF144A MUTATED RNF144A WILD-TYPE 
             0.99              0.10 
  RNF144A MUTATED RNF144A WILD-TYPE 
            61.61            173.79 
  RNF144A MUTATED RNF144A WILD-TYPE 
            25.97             17.42 
[1] "1.0 - 61.6 (26.0)"  "0.1 - 173.8 (17.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" "RNF144A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" "RNF144A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" "RNF144A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
[1] "hr=" "1.1"
D85V2, continuous
D85V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNF144A MUTATED      2    5
  RNF144A WILD-TYPE   45  126
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  FEMALE               2                45
  MALE                 5               126
D85V4, continuous
D85V5, multiclass
                                                             clus
vv                                                            RNF144A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               7
                                                             clus
vv                                                            RNF144A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               165
D85V6, multiclass
    clus
vv   RNF144A MUTATED RNF144A WILD-TYPE
  T1               2                34
  T2               3               113
  T3               1                13
  T4               1                11
D85V7, multiclass
    clus
vv   RNF144A MUTATED RNF144A WILD-TYPE
  N0               7               110
  N1               0                39
  N2               0                17
  N3               0                 5
D85V8, multiclass
    clus
vv   RNF144A MUTATED RNF144A WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
D85V9, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  I                    5                92
  II                   1                37
  III+IV               1                40
D85V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNF144A MUTATED      0    7
  RNF144A WILD-TYPE    4  167
     clus
vv    RNF144A MUTATED RNF144A WILD-TYPE
  NO                0                 4
  YES               7               167
D85V11, continuous
D85V12, continuous
D85V13, multiclass
                                             clus
vv                                            RNF144A MUTATED RNF144A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D85V14, continuous

Clustering(86) Variable = OR4N2 MUTATION ANALYSIS
D86V1, survival
                 sevent
clus2              0  1
  OR4N2 MUTATED    6  2
  OR4N2 WILD-TYPE 91 68
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              8             159 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
              2              68 
$`OR4N2 MUTATED`
TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-5592 TCGA-51-4079 TCGA-66-2765 
       28.34        24.92        43.76         3.02         0.39         2.01 
TCGA-66-2789 TCGA-66-2795 
        4.04         4.01 

$`OR4N2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 
       11.34        13.02        59.51         1.61         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
       90.51        27.16       115.59        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
       15.55         9.30        31.63        29.85        21.57        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         0.99         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR4N2 MUTATED OR4N2 WILD-TYPE 
           0.39            0.10 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
          43.76          173.79 
  OR4N2 MUTATED OR4N2 WILD-TYPE 
          4.025          18.080 
[1] "0.4 - 43.8 (4.0)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" "OR4N2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE"   "OR4N2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" "OR4N2 WILD-TYPE" 
[1] "hr=" "1.1"
D86V2, continuous
D86V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N2 MUTATED      1    8
  OR4N2 WILD-TYPE   46  123
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  FEMALE             1              46
  MALE               8             123
D86V4, continuous
D86V5, multiclass
                                                             clus
vv                                                            OR4N2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            OR4N2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
D86V6, multiclass
    clus
vv   OR4N2 MUTATED OR4N2 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             1              13
  T4             2              10
D86V7, multiclass
    clus
vv   OR4N2 MUTATED OR4N2 WILD-TYPE
  N0             5             112
  N1             3              36
  N2             0              17
  N3             1               4
D86V8, multiclass
    clus
vv   OR4N2 MUTATED OR4N2 WILD-TYPE
  M0             7             158
  M1             1               2
  MX             0               6
D86V9, multiclass
        clus
vv       OR4N2 MUTATED OR4N2 WILD-TYPE
  I                  3              94
  II                 3              35
  III+IV             3              38
D86V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N2 MUTATED      0    9
  OR4N2 WILD-TYPE    4  165
     clus
vv    OR4N2 MUTATED OR4N2 WILD-TYPE
  NO              0               4
  YES             9             165
D86V11, continuous
D86V12, continuous
D86V13, multiclass
                                             clus
vv                                            OR4N2 MUTATED OR4N2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D86V14, continuous

Clustering(87) Variable = PNLIP MUTATION ANALYSIS
D87V1, survival
                 sevent
clus2              0  1
  PNLIP MUTATED    7  3
  PNLIP WILD-TYPE 90 67
  PNLIP MUTATED PNLIP WILD-TYPE 
             10             157 
  PNLIP MUTATED PNLIP WILD-TYPE 
              3              67 
$`PNLIP MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-22-1016 TCGA-22-5473 TCGA-34-5231 TCGA-37-4133 
       79.46        28.34        27.02        63.52        50.24         7.82 
TCGA-43-5668 TCGA-60-2698 TCGA-66-2770 TCGA-85-6560 
        8.48        10.22        23.01         0.36 

$`PNLIP WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       32.84        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 
        0.99         2.01         1.02         2.01         2.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6561 
        0.79 

  PNLIP MUTATED PNLIP WILD-TYPE 
           0.36            0.10 
  PNLIP MUTATED PNLIP WILD-TYPE 
          79.46          173.79 
  PNLIP MUTATED PNLIP WILD-TYPE 
         25.015          16.960 
[1] "0.4 - 79.5 (25.0)"  "0.1 - 173.8 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE"   "PNLIP MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE"   "PNLIP MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE"   "PNLIP MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE"   "PNLIP MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE"   "PNLIP MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE"   "PNLIP MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" "PNLIP WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PNLIP WILD-TYPE"   "PNLIP MUTATED" "PNLIP WILD-TYPE" 
[1] "hr=" "1.6"
D87V2, continuous
D87V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PNLIP MUTATED      0   10
  PNLIP WILD-TYPE   47  121
        clus
vv       PNLIP MUTATED PNLIP WILD-TYPE
  FEMALE             0              47
  MALE              10             121
D87V4, continuous
D87V5, multiclass
                                                             clus
vv                                                            PNLIP MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            PNLIP WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
D87V6, multiclass
    clus
vv   PNLIP MUTATED PNLIP WILD-TYPE
  T1             3              33
  T2             5             111
  T3             1              13
  T4             1              11
D87V7, multiclass
    clus
vv   PNLIP MUTATED PNLIP WILD-TYPE
  N0             6             111
  N1             4              35
  N2             0              17
  N3             0               5
D87V8, multiclass
    clus
vv   PNLIP MUTATED PNLIP WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
D87V9, multiclass
        clus
vv       PNLIP MUTATED PNLIP WILD-TYPE
  I                  4              93
  II                 3              35
  III+IV             2              39
D87V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PNLIP MUTATED      0   10
  PNLIP WILD-TYPE    4  164
     clus
vv    PNLIP MUTATED PNLIP WILD-TYPE
  NO              0               4
  YES            10             164
D87V11, continuous
D87V12, continuous
D87V13, multiclass
                                             clus
vv                                            PNLIP MUTATED PNLIP WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  7              36
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D87V14, continuous

Clustering(88) Variable = OR4C11 MUTATION ANALYSIS
D88V1, survival
                  sevent
clus2               0  1
  OR4C11 MUTATED    4  3
  OR4C11 WILD-TYPE 93 67
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              160 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               3               67 
$`OR4C11 MUTATED`
TCGA-21-1081 TCGA-22-4599 TCGA-22-5474 TCGA-39-5016 TCGA-39-5037 TCGA-66-2763 
        9.30        38.17        14.60        74.07         0.79         0.99 
TCGA-66-2777 
        2.01 

$`OR4C11 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 
      115.59        46.88        60.89        34.78        15.55        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR4C11 MUTATED OR4C11 WILD-TYPE 
            0.79             0.10 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
           74.07           173.79 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
            9.30            18.46 
[1] "0.8 - 74.1 (9.3)"   "0.1 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
[1] "hr=" "1.2"
D88V2, continuous
D88V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C11 MUTATED      2    5
  OR4C11 WILD-TYPE   45  126
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  FEMALE              2               45
  MALE                5              126
D88V4, continuous
[1] "Remove cluster labels:" "OR4C11 MUTATED"        
clus
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5477 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
D88V5, multiclass
                                                             clus
vv                                                            OR4C11 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            OR4C11 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
D88V6, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  T1              1               35
  T2              6              110
  T3              0               14
  T4              0               12
D88V7, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  N0              4              113
  N1              3               36
  N2              0               17
  N3              0                5
D88V8, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
D88V9, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  I                   4               93
  II                  3               35
  III+IV              0               41
D88V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C11 MUTATED      0    7
  OR4C11 WILD-TYPE    4  167
     clus
vv    OR4C11 MUTATED OR4C11 WILD-TYPE
  NO               0                4
  YES              7              167
D88V11, continuous
D88V12, continuous
D88V13, multiclass
                                             clus
vv                                            OR4C11 MUTATED OR4C11 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D88V14, continuous

Clustering(89) Variable = CNTNAP4 MUTATION ANALYSIS
D89V1, survival
                   sevent
clus2                0  1
  CNTNAP4 MUTATED    9  6
  CNTNAP4 WILD-TYPE 88 64
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               15               152 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
                6                64 
$`CNTNAP4 MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-22-0944 TCGA-22-4604 TCGA-22-4613 TCGA-22-5492 
       12.16        79.46         7.33        13.12        11.77        16.60 
TCGA-33-4532 TCGA-34-5231 TCGA-34-5928 TCGA-39-5027 TCGA-46-6025 TCGA-56-6545 
       82.98        50.24         5.52        60.76         0.95         2.04 
TCGA-60-2698 TCGA-60-2723 TCGA-66-2759 
       10.22        22.78        25.02 

$`CNTNAP4 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57        10.82         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 
       20.45        35.08        24.13        38.17        34.75        19.30 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4533 
       71.34        11.74        30.08        62.86        56.32       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       19.76         2.63        61.61        32.84        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
        9.04        10.82         7.73        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
        6.02         2.79         5.42         9.96         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-60-2707 
        0.39         2.07        28.93         0.10         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       35.34        30.61         3.16        26.07        24.10         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
        2.01         0.92         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
             0.95              0.10 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            82.98            173.79 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            13.12             18.46 
[1] "0.9 - 83.0 (13.1)"  "0.1 - 173.8 (18.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
[1] "hr=" "1.1"
D89V2, continuous
D89V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      5   11
  CNTNAP4 WILD-TYPE   42  120
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  FEMALE               5                42
  MALE                11               120
D89V4, continuous
D89V5, multiclass
                                                             clus
vv                                                            CNTNAP4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              15
                                                             clus
vv                                                            CNTNAP4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               157
D89V6, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  T1               4                32
  T2              11               105
  T3               1                13
  T4               0                12
D89V7, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  N0               9               108
  N1               5                34
  N2               2                15
  N3               0                 5
D89V8, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  M0              16               149
  M1               0                 3
  MX               0                 6
D89V9, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  I                    8                89
  II                   4                34
  III+IV               3                38
D89V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      0   16
  CNTNAP4 WILD-TYPE    4  158
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  NO                0                 4
  YES              16               158
D89V11, continuous
D89V12, continuous
D89V13, multiclass
                                             clus
vv                                            CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                39
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       2                 6
D89V14, continuous

Clustering(90) Variable = CUL3 MUTATION ANALYSIS
D90V1, survival
                sevent
clus2             0  1
  CUL3 MUTATED    8  3
  CUL3 WILD-TYPE 89 67
  CUL3 MUTATED CUL3 WILD-TYPE 
            11            156 
  CUL3 MUTATED CUL3 WILD-TYPE 
             3             67 
$`CUL3 MUTATED`
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-34-5928 TCGA-37-4141 TCGA-39-5016 
       90.51         3.02        27.16         5.52         0.39        74.07 
TCGA-39-5021 TCGA-60-2698 TCGA-66-2785 TCGA-66-2800 TCGA-85-6561 
       68.58        10.22         1.94        49.05         0.79 

$`CUL3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       43.76         6.15         2.79       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 
       10.82         7.73        14.07        22.95         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5019 TCGA-39-5022 
        0.43         7.82         6.81         3.39        44.71        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-85-6560 
        5.03        30.02        10.06        54.08         4.01         0.36 

  CUL3 MUTATED CUL3 WILD-TYPE 
          0.39           0.10 
  CUL3 MUTATED CUL3 WILD-TYPE 
         90.51         173.79 
  CUL3 MUTATED CUL3 WILD-TYPE 
         10.22          17.98 
[1] "0.4 - 90.5 (10.2)"  "0.1 - 173.8 (18.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CUL3 MUTATED"   "CUL3 MUTATED" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CUL3 MUTATED" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CUL3 MUTATED"   "CUL3 MUTATED" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CUL3 MUTATED" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CUL3 MUTATED"   "CUL3 MUTATED" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE"   "CUL3 MUTATED" "CUL3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CUL3 MUTATED" "CUL3 WILD-TYPE"   "CUL3 MUTATED" 
[1] "hr=" "1.8"
D90V2, continuous
D90V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CUL3 MUTATED      2    9
  CUL3 WILD-TYPE   45  122
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  FEMALE            2             45
  MALE              9            122
D90V4, continuous
[1] "Remove cluster labels:" "CUL3 MUTATED"          
clus
  CUL3 MUTATED CUL3 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-22-5492     TCGA-34-5234     TCGA-37-4133     TCGA-37-4135 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-37-5819     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"CUL3 WILD-TYPE" "CUL3 WILD-TYPE" "CUL3 WILD-TYPE" 
D90V5, multiclass
                                                             clus
vv                                                            CUL3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           10
                                                             clus
vv                                                            CUL3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            162
D90V6, multiclass
    clus
vv   CUL3 MUTATED CUL3 WILD-TYPE
  T1            2             34
  T2            7            109
  T3            1             13
  T4            1             11
D90V7, multiclass
    clus
vv   CUL3 MUTATED CUL3 WILD-TYPE
  N0            8            109
  N1            3             36
  N2            0             17
  N3            0              5
D90V8, multiclass
    clus
vv   CUL3 MUTATED CUL3 WILD-TYPE
  M0           11            154
  M1            0              3
  MX            0              6
D90V9, multiclass
        clus
vv       CUL3 MUTATED CUL3 WILD-TYPE
  I                 5             92
  II                5             33
  III+IV            1             40
D90V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CUL3 MUTATED      0   11
  CUL3 WILD-TYPE    4  163
     clus
vv    CUL3 MUTATED CUL3 WILD-TYPE
  NO             0              4
  YES           11            163
D90V11, continuous
D90V12, continuous
D90V13, multiclass
                                             clus
vv                                            CUL3 MUTATED CUL3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             40
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    2              6
D90V14, continuous

Clustering(91) Variable = VN1R5 MUTATION ANALYSIS
D91V1, survival
                 sevent
clus2              0  1
  VN1R5 MUTATED    6  2
  VN1R5 WILD-TYPE 91 68
  VN1R5 MUTATED VN1R5 WILD-TYPE 
              8             159 
  VN1R5 MUTATED VN1R5 WILD-TYPE 
              2              68 
$`VN1R5 MUTATED`
TCGA-18-3408 TCGA-33-4532 TCGA-37-3783 TCGA-46-3768 TCGA-60-2708 TCGA-66-2778 
       81.07        82.98         3.95         9.96        68.45        19.00 
TCGA-66-2791 TCGA-66-2795 
        5.03         4.01 

$`VN1R5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        56.32        16.60       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 
        7.00         6.02         2.79         5.42         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        10.22        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  VN1R5 MUTATED VN1R5 WILD-TYPE 
           3.95            0.10 
  VN1R5 MUTATED VN1R5 WILD-TYPE 
          82.98          173.79 
  VN1R5 MUTATED VN1R5 WILD-TYPE 
          14.48           17.88 
[1] "4.0 - 83.0 (14.5)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" "VN1R5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"VN1R5 WILD-TYPE"   "VN1R5 MUTATED" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"VN1R5 WILD-TYPE"   "VN1R5 MUTATED" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" "VN1R5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"VN1R5 WILD-TYPE"   "VN1R5 MUTATED" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"VN1R5 WILD-TYPE"   "VN1R5 MUTATED" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" "VN1R5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"VN1R5 WILD-TYPE"   "VN1R5 MUTATED" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"VN1R5 WILD-TYPE"   "VN1R5 MUTATED" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE"   "VN1R5 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" "VN1R5 WILD-TYPE" 
[1] "hr=" "2.2"
D91V2, continuous
D91V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VN1R5 MUTATED      3    6
  VN1R5 WILD-TYPE   44  125
        clus
vv       VN1R5 MUTATED VN1R5 WILD-TYPE
  FEMALE             3              44
  MALE               6             125
D91V4, continuous
D91V5, multiclass
                                                             clus
vv                                                            VN1R5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            VN1R5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
D91V6, multiclass
    clus
vv   VN1R5 MUTATED VN1R5 WILD-TYPE
  T1             0              36
  T2             5             111
  T3             2              12
  T4             2              10
D91V7, multiclass
    clus
vv   VN1R5 MUTATED VN1R5 WILD-TYPE
  N0             3             114
  N1             3              36
  N2             1              16
  N3             2               3
D91V8, multiclass
    clus
vv   VN1R5 MUTATED VN1R5 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             0               6
D91V9, multiclass
        clus
vv       VN1R5 MUTATED VN1R5 WILD-TYPE
  I                  2              95
  II                 2              36
  III+IV             5              36
D91V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  VN1R5 MUTATED      0    9
  VN1R5 WILD-TYPE    4  165
     clus
vv    VN1R5 MUTATED VN1R5 WILD-TYPE
  NO              0               4
  YES             9             165
D91V11, continuous
D91V12, continuous
D91V13, multiclass
                                             clus
vv                                            VN1R5 MUTATED VN1R5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D91V14, continuous

Clustering(92) Variable = OR8H1 MUTATION ANALYSIS
D92V1, survival
                 sevent
clus2              0  1
  OR8H1 MUTATED    4  3
  OR8H1 WILD-TYPE 93 67
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              7             160 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              3              67 
$`OR8H1 MUTATED`
TCGA-21-1071 TCGA-22-5471 TCGA-33-4566 TCGA-33-4586 TCGA-60-2708 TCGA-60-2719 
       46.88        31.69       173.79        14.07        68.45        30.61 
TCGA-66-2785 
        1.94 

$`OR8H1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
      115.59        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
       43.10       103.53       141.34        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        10.22        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        35.34         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR8H1 MUTATED OR8H1 WILD-TYPE 
           1.94            0.10 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
         173.79          141.34 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
          31.69           16.78 
[1] "1.9 - 173.8 (31.7)" "0.1 - 141.3 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
[1] "hr=" "2.5"
D92V2, continuous
D92V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H1 MUTATED      2    5
  OR8H1 WILD-TYPE   45  126
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  FEMALE             2              45
  MALE               5             126
D92V4, continuous
D92V5, multiclass
                                                             clus
vv                                                            OR8H1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR8H1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D92V6, multiclass
    clus
vv   OR8H1 MUTATED OR8H1 WILD-TYPE
  T1             1              35
  T2             6             110
  T3             0              14
  T4             0              12
D92V7, multiclass
    clus
vv   OR8H1 MUTATED OR8H1 WILD-TYPE
  N0             5             112
  N1             1              38
  N2             1              16
  N3             0               5
D92V8, multiclass
    clus
vv   OR8H1 MUTATED OR8H1 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
D92V9, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             1              40
D92V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H1 MUTATED      1    6
  OR8H1 WILD-TYPE    3  168
     clus
vv    OR8H1 MUTATED OR8H1 WILD-TYPE
  NO              1               3
  YES             6             168
D92V11, continuous
D92V12, continuous
D92V13, multiclass
                                             clus
vv                                            OR8H1 MUTATED OR8H1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D92V14, continuous

Clustering(93) Variable = GUCY1A2 MUTATION ANALYSIS
D93V1, survival
                   sevent
clus2                0  1
  GUCY1A2 MUTATED    5  5
  GUCY1A2 WILD-TYPE 92 65
  GUCY1A2 MUTATED GUCY1A2 WILD-TYPE 
               10               157 
  GUCY1A2 MUTATED GUCY1A2 WILD-TYPE 
                5                65 
$`GUCY1A2 MUTATED`
TCGA-18-4083 TCGA-18-5592 TCGA-21-1078 TCGA-21-5787 TCGA-22-5485 TCGA-34-5231 
        6.15         3.02        15.55        10.82        30.08        50.24 
TCGA-37-4133 TCGA-43-2578 TCGA-46-3768 TCGA-66-2785 
        7.82        18.08         9.96         1.94 

$`GUCY1A2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
       43.76         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78         9.30        31.63        29.85        21.57 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
        0.79        71.34        11.74        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 
       22.95         5.52         4.96         3.95         0.43         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 
       15.58        35.64         0.79        17.88        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 
        8.48         7.00         6.02         2.79         5.42         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
       24.95        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  GUCY1A2 MUTATED GUCY1A2 WILD-TYPE 
             1.94              0.10 
  GUCY1A2 MUTATED GUCY1A2 WILD-TYPE 
            50.24            173.79 
  GUCY1A2 MUTATED GUCY1A2 WILD-TYPE 
            10.39             19.00 
[1] "1.9 - 50.2 (10.4)"  "0.1 - 173.8 (19.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE"   "GUCY1A2 MUTATED" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" "GUCY1A2 WILD-TYPE" 
[1] "hr=" "1.9"
D93V2, continuous
D93V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A2 MUTATED      2    9
  GUCY1A2 WILD-TYPE   45  122
        clus
vv       GUCY1A2 MUTATED GUCY1A2 WILD-TYPE
  FEMALE               2                45
  MALE                 9               122
D93V4, continuous
D93V5, multiclass
                                                             clus
vv                                                            GUCY1A2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              11
                                                             clus
vv                                                            GUCY1A2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               161
D93V6, multiclass
    clus
vv   GUCY1A2 MUTATED GUCY1A2 WILD-TYPE
  T1               3                33
  T2               5               111
  T3               2                12
  T4               1                11
D93V7, multiclass
    clus
vv   GUCY1A2 MUTATED GUCY1A2 WILD-TYPE
  N0               8               109
  N1               2                37
  N2               1                16
  N3               0                 5
D93V8, multiclass
    clus
vv   GUCY1A2 MUTATED GUCY1A2 WILD-TYPE
  M0              11               154
  M1               0                 3
  MX               0                 6
D93V9, multiclass
        clus
vv       GUCY1A2 MUTATED GUCY1A2 WILD-TYPE
  I                    6                91
  II                   2                36
  III+IV               3                38
D93V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  GUCY1A2 MUTATED      1   10
  GUCY1A2 WILD-TYPE    3  164
     clus
vv    GUCY1A2 MUTATED GUCY1A2 WILD-TYPE
  NO                1                 3
  YES              10               164
D93V11, continuous
D93V12, continuous
D93V13, multiclass
                                             clus
vv                                            GUCY1A2 MUTATED GUCY1A2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6                88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       1                 7
D93V14, continuous

Clustering(94) Variable = SLC24A4 MUTATION ANALYSIS
D94V1, survival
                   sevent
clus2                0  1
  SLC24A4 MUTATED    5  5
  SLC24A4 WILD-TYPE 92 65
  SLC24A4 MUTATED SLC24A4 WILD-TYPE 
               10               157 
  SLC24A4 MUTATED SLC24A4 WILD-TYPE 
                5                65 
$`SLC24A4 MUTATED`
TCGA-21-1070 TCGA-21-5787 TCGA-22-4599 TCGA-33-4566 TCGA-43-2578 TCGA-51-4079 
      115.59        10.82        38.17       173.79        18.08         0.39 
TCGA-51-4081 TCGA-60-2726 TCGA-66-2763 TCGA-85-6560 
        2.07        11.77         0.99         0.36 

$`SLC24A4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       27.02        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
        1.22        23.64        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6561 
        0.79 

  SLC24A4 MUTATED SLC24A4 WILD-TYPE 
             0.36              0.10 
  SLC24A4 MUTATED SLC24A4 WILD-TYPE 
           173.79            141.34 
  SLC24A4 MUTATED SLC24A4 WILD-TYPE 
           11.295            18.840 
[1] "0.4 - 173.8 (11.3)" "0.1 - 141.3 (18.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
  "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
  "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
  "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" "SLC24A4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC24A4 WILD-TYPE"   "SLC24A4 MUTATED" "SLC24A4 WILD-TYPE" 
[1] "hr=" "1.2"
D94V2, continuous
D94V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC24A4 MUTATED      5    5
  SLC24A4 WILD-TYPE   42  126
        clus
vv       SLC24A4 MUTATED SLC24A4 WILD-TYPE
  FEMALE               5                42
  MALE                 5               126
D94V4, continuous
D94V5, multiclass
                                                             clus
vv                                                            SLC24A4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              10
                                                             clus
vv                                                            SLC24A4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               162
D94V6, multiclass
    clus
vv   SLC24A4 MUTATED SLC24A4 WILD-TYPE
  T1               1                35
  T2               8               108
  T3               1                13
  T4               0                12
D94V7, multiclass
    clus
vv   SLC24A4 MUTATED SLC24A4 WILD-TYPE
  N0               6               111
  N1               3                36
  N2               1                16
  N3               0                 5
D94V8, multiclass
    clus
vv   SLC24A4 MUTATED SLC24A4 WILD-TYPE
  M0               9               156
  M1               0                 3
  MX               0                 6
D94V9, multiclass
        clus
vv       SLC24A4 MUTATED SLC24A4 WILD-TYPE
  I                    5                92
  II                   2                36
  III+IV               3                38
D94V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC24A4 MUTATED      1    9
  SLC24A4 WILD-TYPE    3  165
     clus
vv    SLC24A4 MUTATED SLC24A4 WILD-TYPE
  NO                1                 3
  YES               9               165
D94V11, continuous
D94V12, continuous
D94V13, multiclass
                                             clus
vv                                            SLC24A4 MUTATED SLC24A4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                43
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                 8
D94V14, continuous

Clustering(95) Variable = MNDA MUTATION ANALYSIS
D95V1, survival
                sevent
clus2             0  1
  MNDA MUTATED    4  2
  MNDA WILD-TYPE 93 68
  MNDA MUTATED MNDA WILD-TYPE 
             6            161 
  MNDA MUTATED MNDA WILD-TYPE 
             2             68 
$`MNDA MUTATED`
TCGA-21-1071 TCGA-21-1076 TCGA-33-4566 TCGA-43-5668 TCGA-66-2734 TCGA-66-2788 
       46.88        60.89       173.79         8.48        43.10        22.98 

$`MNDA WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
      115.59        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 
        0.79        17.88        18.08        11.57        18.84         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  MNDA MUTATED MNDA WILD-TYPE 
          8.48           0.10 
  MNDA MUTATED MNDA WILD-TYPE 
        173.79         141.34 
  MNDA MUTATED MNDA WILD-TYPE 
         44.99          16.60 
[1] "8.5 - 173.8 (45.0)" "0.1 - 141.3 (16.6)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE"   "MNDA MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "MNDA MUTATED" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MNDA WILD-TYPE"   "MNDA MUTATED" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"MNDA WILD-TYPE" "MNDA WILD-TYPE"   "MNDA MUTATED" "MNDA WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE"   "MNDA MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"MNDA WILD-TYPE"   "MNDA MUTATED" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE"   "MNDA MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "MNDA MUTATED" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MNDA WILD-TYPE"   "MNDA MUTATED" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"MNDA WILD-TYPE" "MNDA WILD-TYPE"   "MNDA MUTATED" "MNDA WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE"   "MNDA MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"MNDA WILD-TYPE"   "MNDA MUTATED" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE"   "MNDA MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "MNDA MUTATED" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MNDA WILD-TYPE"   "MNDA MUTATED" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"MNDA WILD-TYPE" "MNDA WILD-TYPE"   "MNDA MUTATED" "MNDA WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE"   "MNDA MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"MNDA WILD-TYPE"   "MNDA MUTATED" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
[1] "hr=" "4.6"
D95V2, continuous
D95V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MNDA MUTATED      2    6
  MNDA WILD-TYPE   45  125
        clus
vv       MNDA MUTATED MNDA WILD-TYPE
  FEMALE            2             45
  MALE              6            125
D95V4, continuous
D95V5, multiclass
                                                             clus
vv                                                            MNDA MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            8
                                                             clus
vv                                                            MNDA WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            164
D95V6, multiclass
    clus
vv   MNDA MUTATED MNDA WILD-TYPE
  T1            2             34
  T2            5            111
  T3            0             14
  T4            1             11
D95V7, multiclass
    clus
vv   MNDA MUTATED MNDA WILD-TYPE
  N0            7            110
  N1            1             38
  N2            0             17
  N3            0              5
D95V8, multiclass
    clus
vv   MNDA MUTATED MNDA WILD-TYPE
  M0            8            157
  M1            0              3
  MX            0              6
D95V9, multiclass
        clus
vv       MNDA MUTATED MNDA WILD-TYPE
  I                 6             91
  II                2             36
  III+IV            0             41
D95V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MNDA MUTATED      0    8
  MNDA WILD-TYPE    4  166
     clus
vv    MNDA MUTATED MNDA WILD-TYPE
  NO             0              4
  YES            8            166
D95V11, continuous
D95V12, continuous
D95V13, multiclass
                                             clus
vv                                            MNDA MUTATED MNDA WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D95V14, continuous
[1] "Remove cluster labels:" "MNDA MUTATED"          
clus
  MNDA MUTATED MNDA WILD-TYPE 
             2            103 
    TCGA-18-3406     TCGA-18-3417     TCGA-21-1078     TCGA-21-5782 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-21-5786     TCGA-21-5787     TCGA-22-0944     TCGA-22-1002 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-1011     TCGA-22-1012     TCGA-22-1016     TCGA-22-4591 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4607     TCGA-22-4613     TCGA-22-5472 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5473     TCGA-22-5474     TCGA-22-5480     TCGA-22-5482 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4533     TCGA-33-4547     TCGA-33-4582 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-33-4583     TCGA-33-4586     TCGA-34-5240     TCGA-34-5241 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-39-5021 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-6143     TCGA-43-6647 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-43-6770     TCGA-43-6771     TCGA-56-1622     TCGA-56-5898 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2707     TCGA-60-2708 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2723     TCGA-60-2724     TCGA-60-2725 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-60-2726     TCGA-63-6202     TCGA-66-2727     TCGA-66-2742 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2744     TCGA-66-2754     TCGA-66-2755     TCGA-66-2756 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2757     TCGA-66-2758     TCGA-66-2759     TCGA-66-2763 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2765     TCGA-66-2766     TCGA-66-2767     TCGA-66-2770 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2771     TCGA-66-2773     TCGA-66-2777     TCGA-66-2778 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2780     TCGA-66-2781     TCGA-66-2782     TCGA-66-2783 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2789     TCGA-66-2791 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MNDA WILD-TYPE" "MNDA WILD-TYPE" "MNDA WILD-TYPE" 

Clustering(96) Variable = OR5AC2 MUTATION ANALYSIS
D96V1, survival
                  sevent
clus2               0  1
  OR5AC2 MUTATED    3  4
  OR5AC2 WILD-TYPE 94 66
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              160 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               4               66 
$`OR5AC2 MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-33-4582 TCGA-34-5236 TCGA-39-5027 TCGA-66-2742 
       79.46         4.80       103.53         9.04        60.76        21.07 
TCGA-66-2773 
        3.02 

$`OR5AC2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
       61.61        32.84        50.24        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
            3.02             0.10 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
          103.53           173.79 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
           21.07            17.42 
[1] "3.0 - 103.5 (21.1)" "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
[1] "hr=" "1.1"
D96V2, continuous
D96V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AC2 MUTATED      0    7
  OR5AC2 WILD-TYPE   47  124
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  FEMALE              0               47
  MALE                7              124
D96V4, continuous
[1] "Remove cluster labels:" "OR5AC2 MUTATED"        
clus
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3414       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5787       TCGA-22-4591       TCGA-22-4593 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
D96V5, multiclass
                                                             clus
vv                                                            OR5AC2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            OR5AC2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
D96V6, multiclass
    clus
vv   OR5AC2 MUTATED OR5AC2 WILD-TYPE
  T1              2               34
  T2              3              113
  T3              2               12
  T4              0               12
D96V7, multiclass
    clus
vv   OR5AC2 MUTATED OR5AC2 WILD-TYPE
  N0              6              111
  N1              1               38
  N2              0               17
  N3              0                5
D96V8, multiclass
    clus
vv   OR5AC2 MUTATED OR5AC2 WILD-TYPE
  M0              6              159
  M1              1                2
  MX              0                6
D96V9, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  I                   3               94
  II                  1               37
  III+IV              2               39
D96V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AC2 MUTATED      0    7
  OR5AC2 WILD-TYPE    4  167
     clus
vv    OR5AC2 MUTATED OR5AC2 WILD-TYPE
  NO               0                4
  YES              7              167
D96V11, continuous
D96V12, continuous
D96V13, multiclass
                                             clus
vv                                            OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D96V14, continuous

Clustering(97) Variable = OR8K3 MUTATION ANALYSIS
D97V1, survival
                 sevent
clus2              0  1
  OR8K3 MUTATED    5  2
  OR8K3 WILD-TYPE 92 68
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             160 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              2              68 
$`OR8K3 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-22-5478 TCGA-37-5819 TCGA-39-5037 TCGA-66-2767 
       79.46       115.59         0.79         3.39         0.79         2.01 
TCGA-66-2793 
       10.06 

$`OR8K3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        3.95         0.43         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       40.01        22.98         4.04         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR8K3 MUTATED OR8K3 WILD-TYPE 
           0.79            0.10 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
         115.59          173.79 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
           3.39           18.46 
[1] "0.8 - 115.6 (3.4)"  "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
[1] "hr=" "1.6"
D97V2, continuous
D97V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      1    6
  OR8K3 WILD-TYPE   46  125
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  FEMALE             1              46
  MALE               6             125
D97V4, continuous
[1] "Remove cluster labels:" "OR8K3 MUTATED"         
clus
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5480      TCGA-22-5482 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-60-2698 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
D97V5, multiclass
                                                             clus
vv                                                            OR8K3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            OR8K3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D97V6, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  T1             2              34
  T2             3             113
  T3             1              13
  T4             1              11
D97V7, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  N0             3             114
  N1             2              37
  N2             1              16
  N3             1               4
D97V8, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
D97V9, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  I                  1              96
  II                 1              37
  III+IV             4              37
D97V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      0    7
  OR8K3 WILD-TYPE    4  167
     clus
vv    OR8K3 MUTATED OR8K3 WILD-TYPE
  NO              0               4
  YES             7             167
D97V11, continuous
D97V12, continuous
D97V13, multiclass
                                             clus
vv                                            OR8K3 MUTATED OR8K3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D97V14, continuous

Clustering(98) Variable = TAS2R60 MUTATION ANALYSIS
D98V1, survival
                   sevent
clus2                0  1
  TAS2R60 MUTATED    5  0
  TAS2R60 WILD-TYPE 92 70
  TAS2R60 MUTATED TAS2R60 WILD-TYPE 
                5               162 
  TAS2R60 MUTATED TAS2R60 WILD-TYPE 
                0                70 
$`TAS2R60 MUTATED`
TCGA-18-3409 TCGA-21-5786 TCGA-34-5928 TCGA-39-5016 TCGA-51-4081 
       79.46        21.57         5.52        74.07         2.07 

$`TAS2R60 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
        9.04        10.82         7.73        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         0.39        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  TAS2R60 MUTATED TAS2R60 WILD-TYPE 
             2.07              0.10 
  TAS2R60 MUTATED TAS2R60 WILD-TYPE 
            79.46            173.79 
  TAS2R60 MUTATED TAS2R60 WILD-TYPE 
            21.57             17.42 
[1] "2.1 - 79.5 (21.6)"  "0.1 - 173.8 (17.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TAS2R60 WILD-TYPE"   "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "TAS2R60 MUTATED" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
[1] "hr="     "2.7e+07"
D98V2, continuous
D98V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TAS2R60 MUTATED      1    6
  TAS2R60 WILD-TYPE   46  125
        clus
vv       TAS2R60 MUTATED TAS2R60 WILD-TYPE
  FEMALE               1                46
  MALE                 6               125
D98V4, continuous
[1] "Remove cluster labels:" "TAS2R60 MUTATED"       
clus
  TAS2R60 MUTATED TAS2R60 WILD-TYPE 
                1                35 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4133        TCGA-37-4135 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-37-5819        TCGA-60-2698        TCGA-60-2712        TCGA-60-2715 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-70-6723 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
D98V5, multiclass
                                                             clus
vv                                                            TAS2R60 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               5
                                                             clus
vv                                                            TAS2R60 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               167
D98V6, multiclass
    clus
vv   TAS2R60 MUTATED TAS2R60 WILD-TYPE
  T1               2                34
  T2               4               112
  T3               1                13
  T4               0                12
D98V7, multiclass
    clus
vv   TAS2R60 MUTATED TAS2R60 WILD-TYPE
  N0               3               114
  N1               4                35
  N2               0                17
  N3               0                 5
D98V8, multiclass
    clus
vv   TAS2R60 MUTATED TAS2R60 WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
D98V9, multiclass
        clus
vv       TAS2R60 MUTATED TAS2R60 WILD-TYPE
  I                    2                95
  II                   3                35
  III+IV               1                40
D98V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TAS2R60 MUTATED      0    7
  TAS2R60 WILD-TYPE    4  167
     clus
vv    TAS2R60 MUTATED TAS2R60 WILD-TYPE
  NO                0                 4
  YES               7               167
D98V11, continuous
D98V12, continuous
D98V13, multiclass
                                             clus
vv                                            TAS2R60 MUTATED TAS2R60 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1                93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       1                 7
D98V14, continuous
[1] "Remove cluster labels:" "TAS2R60 MUTATED"       
clus
  TAS2R60 MUTATED TAS2R60 WILD-TYPE 
                2               103 
       TCGA-18-3406        TCGA-18-3417        TCGA-21-1078        TCGA-21-5782 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-21-5787        TCGA-22-0944        TCGA-22-1002        TCGA-22-1011 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-1012        TCGA-22-1016        TCGA-22-4591        TCGA-22-4593 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-4607        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5480        TCGA-22-5482        TCGA-22-5492 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4547        TCGA-33-4582        TCGA-33-4583 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-33-4586        TCGA-34-5240        TCGA-34-5241        TCGA-37-4133 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-37-4135        TCGA-37-5819        TCGA-39-5021        TCGA-39-5022 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5035        TCGA-39-5036 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2578        TCGA-43-3394 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-43-3920        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-43-6771        TCGA-56-1622        TCGA-56-6545        TCGA-56-6546 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2715 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2723 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-6202 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2742        TCGA-66-2744 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2770        TCGA-66-2771 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2786 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" "TAS2R60 WILD-TYPE" 

Clustering(99) Variable = CCDC85A MUTATION ANALYSIS
D99V1, survival
                   sevent
clus2                0  1
  CCDC85A MUTATED    8  1
  CCDC85A WILD-TYPE 89 69
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               158 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                1                69 
$`CCDC85A MUTATED`
TCGA-18-3414 TCGA-21-1070 TCGA-33-4533 TCGA-33-4583 TCGA-39-5016 TCGA-39-5036 
       13.02       115.59       114.05       141.34        74.07        35.64 
TCGA-60-2719 TCGA-66-2763 TCGA-66-2785 
       30.61         0.99         1.94 

$`CCDC85A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60        82.98        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 
        0.43         7.82         6.81         0.39         3.39        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        15.58         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CCDC85A MUTATED CCDC85A WILD-TYPE 
             0.99              0.10 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
           141.34            173.79 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
            35.64             16.78 
[1] "1.0 - 141.3 (35.6)" "0.1 - 173.8 (16.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
[1] "hr=" "9.4"
D99V2, continuous
D99V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC85A MUTATED      4    5
  CCDC85A WILD-TYPE   43  126
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  FEMALE               4                43
  MALE                 5               126
D99V4, continuous
[1] "Remove cluster labels:" "CCDC85A MUTATED"       
clus
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                1                35 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5787        TCGA-22-4591        TCGA-22-4593 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
D99V5, multiclass
                                                             clus
vv                                                            CCDC85A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               8
                                                             clus
vv                                                            CCDC85A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               164
D99V6, multiclass
    clus
vv   CCDC85A MUTATED CCDC85A WILD-TYPE
  T1               2                34
  T2               5               111
  T3               1                13
  T4               1                11
D99V7, multiclass
    clus
vv   CCDC85A MUTATED CCDC85A WILD-TYPE
  N0               7               110
  N1               2                37
  N2               0                17
  N3               0                 5
D99V8, multiclass
    clus
vv   CCDC85A MUTATED CCDC85A WILD-TYPE
  M0               8               157
  M1               1                 2
  MX               0                 6
D99V9, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  I                    6                91
  II                   1                37
  III+IV               2                39
D99V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC85A MUTATED      0    9
  CCDC85A WILD-TYPE    4  165
     clus
vv    CCDC85A MUTATED CCDC85A WILD-TYPE
  NO                0                 4
  YES               9               165
D99V11, continuous
D99V12, continuous
D99V13, multiclass
                                             clus
vv                                            CCDC85A MUTATED CCDC85A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               8                86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                 8
D99V14, continuous

Clustering(100) Variable = ZNF98 MUTATION ANALYSIS
D100V1, survival
                 sevent
clus2              0  1
  ZNF98 MUTATED    4  3
  ZNF98 WILD-TYPE 93 67
  ZNF98 MUTATED ZNF98 WILD-TYPE 
              7             160 
  ZNF98 MUTATED ZNF98 WILD-TYPE 
              3              67 
$`ZNF98 MUTATED`
TCGA-18-3410 TCGA-21-5784 TCGA-22-4599 TCGA-43-5668 TCGA-66-2754 TCGA-66-2770 
        4.80        29.85        38.17         8.48         2.01        23.01 
TCGA-66-2773 
        3.02 

$`ZNF98 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       27.02        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 
        0.79        17.88        18.08        11.57        18.84         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         0.99         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01         2.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  ZNF98 MUTATED ZNF98 WILD-TYPE 
           2.01            0.10 
  ZNF98 MUTATED ZNF98 WILD-TYPE 
          38.17          173.79 
  ZNF98 MUTATED ZNF98 WILD-TYPE 
           8.48           17.98 
[1] "2.0 - 38.2 (8.5)"   "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "ZNF98 MUTATED" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "ZNF98 MUTATED" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE"   "ZNF98 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "ZNF98 MUTATED" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "ZNF98 MUTATED" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE"   "ZNF98 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "ZNF98 MUTATED" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "ZNF98 MUTATED" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF98 WILD-TYPE"   "ZNF98 MUTATED" "ZNF98 WILD-TYPE"   "ZNF98 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
[1] "hr=" "1.6"
D100V2, continuous
D100V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF98 MUTATED      2    6
  ZNF98 WILD-TYPE   45  125
        clus
vv       ZNF98 MUTATED ZNF98 WILD-TYPE
  FEMALE             2              45
  MALE               6             125
D100V4, continuous
[1] "Remove cluster labels:" "ZNF98 MUTATED"         
clus
  ZNF98 MUTATED ZNF98 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3414      TCGA-18-3419 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"ZNF98 WILD-TYPE" "ZNF98 WILD-TYPE" 
D100V5, multiclass
                                                             clus
vv                                                            ZNF98 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            ZNF98 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
D100V6, multiclass
    clus
vv   ZNF98 MUTATED ZNF98 WILD-TYPE
  T1             1              35
  T2             6             110
  T3             1              13
  T4             0              12
D100V7, multiclass
    clus
vv   ZNF98 MUTATED ZNF98 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
D100V8, multiclass
    clus
vv   ZNF98 MUTATED ZNF98 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
D100V9, multiclass
        clus
vv       ZNF98 MUTATED ZNF98 WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             2              39
D100V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF98 MUTATED      0    8
  ZNF98 WILD-TYPE    4  166
     clus
vv    ZNF98 MUTATED ZNF98 WILD-TYPE
  NO              0               4
  YES             8             166
D100V11, continuous
D100V12, continuous
D100V13, multiclass
                                             clus
vv                                            ZNF98 MUTATED ZNF98 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              39
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D100V14, continuous

Clustering(101) Variable = PCDHB10 MUTATION ANALYSIS
D101V1, survival
                   sevent
clus2                0  1
  PCDHB10 MUTATED    6  6
  PCDHB10 WILD-TYPE 91 64
  PCDHB10 MUTATED PCDHB10 WILD-TYPE 
               12               155 
  PCDHB10 MUTATED PCDHB10 WILD-TYPE 
                6                64 
$`PCDHB10 MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-21-5786 TCGA-22-1016 TCGA-22-4601 TCGA-22-5482 
       12.16        79.46        21.57        27.02        34.75        11.74 
TCGA-22-5489 TCGA-37-4133 TCGA-39-5019 TCGA-56-1622 TCGA-60-2708 TCGA-66-2777 
       62.86         7.82        44.71        28.93        68.45         2.01 

$`PCDHB10 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 
       10.82         7.33         4.31         1.74        14.10        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       35.08        24.13        38.17        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       71.34        30.08        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         0.43         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
        3.39        74.07        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         0.39         2.07         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        10.22        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        2.01         2.01        23.01        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  PCDHB10 MUTATED PCDHB10 WILD-TYPE 
             2.01              0.10 
  PCDHB10 MUTATED PCDHB10 WILD-TYPE 
            79.46            173.79 
  PCDHB10 MUTATED PCDHB10 WILD-TYPE 
           27.975            16.600 
[1] "2.0 - 79.5 (28.0)"  "0.1 - 173.8 (16.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE"   "PCDHB10 MUTATED" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
  "PCDHB10 MUTATED" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" "PCDHB10 WILD-TYPE" 
[1] "hr=" "1.1"
D101V2, continuous
D101V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHB10 MUTATED      2   10
  PCDHB10 WILD-TYPE   45  121
        clus
vv       PCDHB10 MUTATED PCDHB10 WILD-TYPE
  FEMALE               2                45
  MALE                10               121
D101V4, continuous
D101V5, multiclass
                                                             clus
vv                                                            PCDHB10 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              11
                                                             clus
vv                                                            PCDHB10 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               161
D101V6, multiclass
    clus
vv   PCDHB10 MUTATED PCDHB10 WILD-TYPE
  T1               3                33
  T2               7               109
  T3               0                14
  T4               2                10
D101V7, multiclass
    clus
vv   PCDHB10 MUTATED PCDHB10 WILD-TYPE
  N0              11               106
  N1               1                38
  N2               0                17
  N3               0                 5
D101V8, multiclass
    clus
vv   PCDHB10 MUTATED PCDHB10 WILD-TYPE
  M0              12               153
  M1               0                 3
  MX               0                 6
D101V9, multiclass
        clus
vv       PCDHB10 MUTATED PCDHB10 WILD-TYPE
  I                    8                89
  II                   1                37
  III+IV               2                39
D101V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDHB10 MUTATED      0   12
  PCDHB10 WILD-TYPE    4  162
     clus
vv    PCDHB10 MUTATED PCDHB10 WILD-TYPE
  NO                0                 4
  YES              12               162
D101V11, continuous
D101V12, continuous
D101V13, multiclass
                                             clus
vv                                            PCDHB10 MUTATED PCDHB10 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6                88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                39
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                 8
D101V14, continuous

Clustering(102) Variable = GABRA6 MUTATION ANALYSIS
D102V1, survival
                  sevent
clus2               0  1
  GABRA6 MUTATED    1  6
  GABRA6 WILD-TYPE 96 64
  GABRA6 MUTATED GABRA6 WILD-TYPE 
               7              160 
  GABRA6 MUTATED GABRA6 WILD-TYPE 
               6               64 
$`GABRA6 MUTATED`
TCGA-18-3412 TCGA-22-1002 TCGA-33-4566 TCGA-34-2600 TCGA-39-5028 TCGA-66-2770 
       11.34         4.31       173.79        61.61         1.71        23.01 
TCGA-66-2789 
        4.04 

$`GABRA6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57        10.82         7.33         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 
       44.71        68.58        55.17        70.03        60.76        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  GABRA6 MUTATED GABRA6 WILD-TYPE 
            1.71             0.10 
  GABRA6 MUTATED GABRA6 WILD-TYPE 
          173.79           141.34 
  GABRA6 MUTATED GABRA6 WILD-TYPE 
           11.34            17.98 
[1] "1.7 - 173.8 (11.3)" "0.1 - 141.3 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE"   "GABRA6 MUTATED" "GABRA6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" "GABRA6 WILD-TYPE" 
[1] "hr=" "1.6"
D102V2, continuous
D102V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA6 MUTATED      1    7
  GABRA6 WILD-TYPE   46  124
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  FEMALE              1               46
  MALE                7              124
D102V4, continuous
D102V5, multiclass
                                                             clus
vv                                                            GABRA6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            GABRA6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
D102V6, multiclass
    clus
vv   GABRA6 MUTATED GABRA6 WILD-TYPE
  T1              3               33
  T2              3              113
  T3              0               14
  T4              2               10
D102V7, multiclass
    clus
vv   GABRA6 MUTATED GABRA6 WILD-TYPE
  N0              6              111
  N1              1               38
  N2              0               17
  N3              1                4
D102V8, multiclass
    clus
vv   GABRA6 MUTATED GABRA6 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
D102V9, multiclass
        clus
vv       GABRA6 MUTATED GABRA6 WILD-TYPE
  I                   5               92
  II                  1               37
  III+IV              2               39
D102V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA6 MUTATED      0    8
  GABRA6 WILD-TYPE    4  166
     clus
vv    GABRA6 MUTATED GABRA6 WILD-TYPE
  NO               0                4
  YES              8              166
D102V11, continuous
D102V12, continuous
D102V13, multiclass
                                             clus
vv                                            GABRA6 MUTATED GABRA6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D102V14, continuous

Clustering(103) Variable = C8ORF22 MUTATION ANALYSIS
D103V1, survival
                   sevent
clus2                0  1
  C8ORF22 MUTATED    1  2
  C8ORF22 WILD-TYPE 96 68
  C8ORF22 MUTATED C8ORF22 WILD-TYPE 
                3               164 
  C8ORF22 MUTATED C8ORF22 WILD-TYPE 
                2                68 
$`C8ORF22 MUTATED`
TCGA-18-3409 TCGA-18-3414 TCGA-18-4086 
       79.46        13.02         2.79 

$`C8ORF22 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  C8ORF22 MUTATED C8ORF22 WILD-TYPE 
             2.79              0.10 
  C8ORF22 MUTATED C8ORF22 WILD-TYPE 
            79.46            173.79 
  C8ORF22 MUTATED C8ORF22 WILD-TYPE 
            13.02             17.98 
[1] "2.8 - 79.5 (13.0)"  "0.1 - 173.8 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE"   "C8ORF22 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE"   "C8ORF22 MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE"   "C8ORF22 MUTATED" "C8ORF22 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE"   "C8ORF22 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE"   "C8ORF22 MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE"   "C8ORF22 MUTATED" "C8ORF22 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE"   "C8ORF22 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE"   "C8ORF22 MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE"   "C8ORF22 MUTATED" "C8ORF22 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
[1] "hr=" "1.3"
D103V2, continuous
D103V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C8ORF22 MUTATED      0    4
  C8ORF22 WILD-TYPE   47  127
        clus
vv       C8ORF22 MUTATED C8ORF22 WILD-TYPE
  FEMALE               0                47
  MALE                 4               127
D103V4, continuous
[1] "Remove cluster labels:" "C8ORF22 MUTATED"       
clus
  C8ORF22 MUTATED C8ORF22 WILD-TYPE 
                1                35 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3419 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5787        TCGA-22-4591        TCGA-22-4593 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" "C8ORF22 WILD-TYPE" 
D103V5, multiclass
                                                             clus
vv                                                            C8ORF22 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               3
                                                             clus
vv                                                            C8ORF22 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               169
D103V6, multiclass
    clus
vv   C8ORF22 MUTATED C8ORF22 WILD-TYPE
  T1               1                35
  T2               2               114
  T3               0                14
  T4               1                11
D103V7, multiclass
    clus
vv   C8ORF22 MUTATED C8ORF22 WILD-TYPE
  N0               3               114
  N1               1                38
  N2               0                17
  N3               0                 5
D103V8, multiclass
    clus
vv   C8ORF22 MUTATED C8ORF22 WILD-TYPE
  M0               3               162
  M1               1                 2
  MX               0                 6
D103V9, multiclass
        clus
vv       C8ORF22 MUTATED C8ORF22 WILD-TYPE
  I                    2                95
  II                   0                38
  III+IV               1                40
D103V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C8ORF22 MUTATED      0    4
  C8ORF22 WILD-TYPE    4  170
     clus
vv    C8ORF22 MUTATED C8ORF22 WILD-TYPE
  NO                0                 4
  YES               4               170
D103V11, continuous
D103V12, continuous
D103V13, multiclass
                                             clus
vv                                            C8ORF22 MUTATED C8ORF22 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                 8
D103V14, continuous

Clustering(104) Variable = ACSM2B MUTATION ANALYSIS
D104V1, survival
                  sevent
clus2               0  1
  ACSM2B MUTATED    8  5
  ACSM2B WILD-TYPE 89 65
  ACSM2B MUTATED ACSM2B WILD-TYPE 
              13              154 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
               5               65 
$`ACSM2B MUTATED`
TCGA-18-3409 TCGA-21-1077 TCGA-22-5480 TCGA-33-4586 TCGA-34-5231 TCGA-34-5234 
       79.46        34.78        71.34        14.07        50.24        32.68 
TCGA-37-3789 TCGA-43-3920 TCGA-60-2726 TCGA-66-2754 TCGA-66-2773 TCGA-66-2777 
        0.43        18.84        11.77         2.01         3.02         2.01 
TCGA-66-2800 
       49.05 

$`ACSM2B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       46.88        60.89        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22         0.79        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53       141.34        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       32.84        51.78         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 
       22.95         5.52         4.96         3.95         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 
       23.64        16.96        43.10        21.07         0.99         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2778 
        1.02         2.01         2.01        23.01        19.00        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01         0.36         0.79 

  ACSM2B MUTATED ACSM2B WILD-TYPE 
            0.43             0.10 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
           79.46           173.79 
  ACSM2B MUTATED ACSM2B WILD-TYPE 
           18.84            17.42 
[1] "0.4 - 79.5 (18.8)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" "ACSM2B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE"   "ACSM2B MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
  "ACSM2B MUTATED" "ACSM2B WILD-TYPE" "ACSM2B WILD-TYPE" 
[1] "hr=" "1.2"
D104V2, continuous
D104V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACSM2B MUTATED      2   11
  ACSM2B WILD-TYPE   45  120
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  FEMALE              2               45
  MALE               11              120
D104V4, continuous
D104V5, multiclass
                                                             clus
vv                                                            ACSM2B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             12
                                                             clus
vv                                                            ACSM2B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              160
D104V6, multiclass
    clus
vv   ACSM2B MUTATED ACSM2B WILD-TYPE
  T1              4               32
  T2              8              108
  T3              0               14
  T4              1               11
D104V7, multiclass
    clus
vv   ACSM2B MUTATED ACSM2B WILD-TYPE
  N0              9              108
  N1              2               37
  N2              2               15
  N3              0                5
D104V8, multiclass
    clus
vv   ACSM2B MUTATED ACSM2B WILD-TYPE
  M0             12              153
  M1              0                3
  MX              0                6
D104V9, multiclass
        clus
vv       ACSM2B MUTATED ACSM2B WILD-TYPE
  I                   7               90
  II                  2               36
  III+IV              3               38
D104V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ACSM2B MUTATED      0   13
  ACSM2B WILD-TYPE    4  161
     clus
vv    ACSM2B MUTATED ACSM2B WILD-TYPE
  NO               0                4
  YES             13              161
D104V11, continuous
D104V12, continuous
D104V13, multiclass
                                             clus
vv                                            ACSM2B MUTATED ACSM2B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      2                6
D104V14, continuous

Clustering(105) Variable = HDAC9 MUTATION ANALYSIS
D105V1, survival
                 sevent
clus2              0  1
  HDAC9 MUTATED    8  6
  HDAC9 WILD-TYPE 89 64
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             153 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
              6              64 
$`HDAC9 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-22-5472 TCGA-22-5478 TCGA-33-4533 TCGA-33-4566 
       79.46       115.59        64.90         0.79       114.05       173.79 
TCGA-33-6737 TCGA-34-2596 TCGA-34-5240 TCGA-43-3394 TCGA-66-2742 TCGA-66-2759 
       19.76         2.63         7.73        11.57        21.07        25.02 
TCGA-66-2791 TCGA-85-6561 
        5.03         0.79 

$`HDAC9 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        11.77        31.69        63.52        14.60 
TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       16.60        82.98        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       14.07        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
        0.79        17.88        18.08        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  HDAC9 MUTATED HDAC9 WILD-TYPE 
           0.79            0.10 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
         173.79          141.34 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
         20.415          16.960 
[1] "0.8 - 173.8 (20.4)" "0.1 - 141.3 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
[1] "hr=" "2"  
D105V2, continuous
D105V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HDAC9 MUTATED      3   11
  HDAC9 WILD-TYPE   44  120
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  FEMALE             3              44
  MALE              11             120
D105V4, continuous
[1] "Remove cluster labels:" "HDAC9 MUTATED"         
clus
  HDAC9 MUTATED HDAC9 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5473      TCGA-22-5474 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
D105V5, multiclass
                                                             clus
vv                                                            HDAC9 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            HDAC9 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
D105V6, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  T1             1              35
  T2            12             104
  T3             1              13
  T4             0              12
D105V7, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  N0             8             109
  N1             3              36
  N2             2              15
  N3             1               4
D105V8, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  M0            13             152
  M1             1               2
  MX             0               6
D105V9, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  I                  5              92
  II                 3              35
  III+IV             5              36
D105V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HDAC9 MUTATED      0   14
  HDAC9 WILD-TYPE    4  160
     clus
vv    HDAC9 MUTATED HDAC9 WILD-TYPE
  NO              0               4
  YES            14             160
D105V11, continuous
D105V12, continuous
D105V13, multiclass
                                             clus
vv                                            HDAC9 MUTATED HDAC9 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              39
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0               8
D105V14, continuous

Clustering(106) Variable = OR2T2 MUTATION ANALYSIS
D106V1, survival
                 sevent
clus2              0  1
  OR2T2 MUTATED    4  2
  OR2T2 WILD-TYPE 93 68
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              6             161 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              2              68 
$`OR2T2 MUTATED`
TCGA-18-4083 TCGA-33-4566 TCGA-37-5819 TCGA-39-5027 TCGA-39-5035 TCGA-66-2770 
        6.15       173.79         3.39        60.76        15.58        23.01 

$`OR2T2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.35        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  OR2T2 MUTATED OR2T2 WILD-TYPE 
           3.39            0.10 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
         173.79          141.34 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
         19.295          17.880 
[1] "3.4 - 173.8 (19.3)" "0.1 - 141.3 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
[1] "hr=" "3.5"
D106V2, continuous
D106V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T2 MUTATED      1    6
  OR2T2 WILD-TYPE   46  125
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  FEMALE             1              46
  MALE               6             125
D106V4, continuous
[1] "Remove cluster labels:" "OR2T2 MUTATED"         
clus
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-4135 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
D106V5, multiclass
                                                             clus
vv                                                            OR2T2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR2T2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D106V6, multiclass
    clus
vv   OR2T2 MUTATED OR2T2 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             0              14
  T4             1              11
D106V7, multiclass
    clus
vv   OR2T2 MUTATED OR2T2 WILD-TYPE
  N0             5             112
  N1             1              38
  N2             1              16
  N3             0               5
D106V8, multiclass
    clus
vv   OR2T2 MUTATED OR2T2 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
D106V9, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             1              40
D106V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T2 MUTATED      0    7
  OR2T2 WILD-TYPE    4  167
     clus
vv    OR2T2 MUTATED OR2T2 WILD-TYPE
  NO              0               4
  YES             7             167
D106V11, continuous
D106V12, continuous
D106V13, multiclass
                                             clus
vv                                            OR2T2 MUTATED OR2T2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D106V14, continuous

Clustering(107) Variable = TEX13A MUTATION ANALYSIS
D107V1, survival
                  sevent
clus2               0  1
  TEX13A MUTATED    5  3
  TEX13A WILD-TYPE 92 67
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              159 
  TEX13A MUTATED TEX13A WILD-TYPE 
               3               67 
$`TEX13A MUTATED`
TCGA-21-1070 TCGA-22-1016 TCGA-22-4613 TCGA-43-3394 TCGA-43-6770 TCGA-66-2767 
      115.59        27.02        11.77        11.57         2.79         2.01 
TCGA-66-2791 TCGA-66-2795 
        5.03         4.01 

$`TEX13A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
        0.79        17.88        18.08        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.02         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  TEX13A MUTATED TEX13A WILD-TYPE 
            2.01             0.10 
  TEX13A MUTATED TEX13A WILD-TYPE 
          115.59           173.79 
  TEX13A MUTATED TEX13A WILD-TYPE 
            8.30            18.84 
[1] "2.0 - 115.6 (8.3)"  "0.1 - 173.8 (18.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
[1] "hr=" "1.1"
D107V2, continuous
D107V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TEX13A MUTATED      3    5
  TEX13A WILD-TYPE   44  126
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  FEMALE              3               44
  MALE                5              126
D107V4, continuous
[1] "Remove cluster labels:" "TEX13A MUTATED"        
clus
  TEX13A MUTATED TEX13A WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4604       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
D107V5, multiclass
                                                             clus
vv                                                            TEX13A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            TEX13A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
D107V6, multiclass
    clus
vv   TEX13A MUTATED TEX13A WILD-TYPE
  T1              1               35
  T2              5              111
  T3              1               13
  T4              1               11
D107V7, multiclass
    clus
vv   TEX13A MUTATED TEX13A WILD-TYPE
  N0              5              112
  N1              1               38
  N2              0               17
  N3              2                3
D107V8, multiclass
    clus
vv   TEX13A MUTATED TEX13A WILD-TYPE
  M0              7              158
  M1              0                3
  MX              1                5
D107V9, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  I                   4               93
  II                  0               38
  III+IV              4               37
D107V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TEX13A MUTATED      0    8
  TEX13A WILD-TYPE    4  166
     clus
vv    TEX13A MUTATED TEX13A WILD-TYPE
  NO               0                4
  YES              8              166
D107V11, continuous
D107V12, continuous
D107V13, multiclass
                                             clus
vv                                            TEX13A MUTATED TEX13A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D107V14, continuous

Clustering(108) Variable = OR14A16 MUTATION ANALYSIS
D108V1, survival
                   sevent
clus2                0  1
  OR14A16 MUTATED    4  3
  OR14A16 WILD-TYPE 93 67
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                7               160 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                3                67 
$`OR14A16 MUTATED`
TCGA-18-3409 TCGA-33-6737 TCGA-51-4080 TCGA-60-2720 TCGA-66-2754 TCGA-66-2789 
       79.46        19.76         0.39         3.16         2.01         4.04 
TCGA-85-6561 
        0.79 

$`OR14A16 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         0.99         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       54.08         4.01        49.05         0.36 

  OR14A16 MUTATED OR14A16 WILD-TYPE 
             0.39              0.10 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
            79.46            173.79 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
             3.16             18.46 
[1] "0.4 - 79.5 (3.2)"   "0.1 - 173.8 (18.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
[1] "hr=" "1.7"
D108V2, continuous
D108V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      2    6
  OR14A16 WILD-TYPE   45  125
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  FEMALE               2                45
  MALE                 6               125
D108V4, continuous
D108V5, multiclass
                                                             clus
vv                                                            OR14A16 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               6
                                                             clus
vv                                                            OR14A16 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               166
D108V6, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  T1               3                33
  T2               4               112
  T3               0                14
  T4               1                11
D108V7, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  N0               4               113
  N1               1                38
  N2               2                15
  N3               1                 4
D108V8, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
D108V9, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  I                    2                95
  II                   1                37
  III+IV               4                37
D108V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      0    8
  OR14A16 WILD-TYPE    4  166
     clus
vv    OR14A16 MUTATED OR14A16 WILD-TYPE
  NO                0                 4
  YES               8               166
D108V11, continuous
D108V12, continuous
D108V13, multiclass
                                             clus
vv                                            OR14A16 MUTATED OR14A16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6                88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D108V14, continuous

Clustering(109) Variable = OR10R2 MUTATION ANALYSIS
D109V1, survival
                  sevent
clus2               0  1
  OR10R2 MUTATED    4  3
  OR10R2 WILD-TYPE 93 67
  OR10R2 MUTATED OR10R2 WILD-TYPE 
               7              160 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
               3               67 
$`OR10R2 MUTATED`
TCGA-33-4586 TCGA-34-2600 TCGA-39-5031 TCGA-39-5037 TCGA-51-4079 TCGA-66-2763 
       14.07        61.61        27.35         0.79         0.39         0.99 
TCGA-66-2795 
        4.01 

$`OR10R2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       19.76         2.63        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 
       60.76         1.71        24.33         1.94        15.58        35.64 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08        49.05         0.36         0.79 

  OR10R2 MUTATED OR10R2 WILD-TYPE 
            0.39             0.10 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
           61.61           173.79 
  OR10R2 MUTATED OR10R2 WILD-TYPE 
            4.01            18.46 
[1] "0.4 - 61.6 (4.0)"   "0.1 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" "OR10R2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR10R2 MUTATED" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE"   "OR10R2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" "OR10R2 WILD-TYPE" 
[1] "hr=" "1.7"
D109V2, continuous
D109V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10R2 MUTATED      4    3
  OR10R2 WILD-TYPE   43  128
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  FEMALE              4               43
  MALE                3              128
D109V4, continuous
D109V5, multiclass
                                                             clus
vv                                                            OR10R2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              7
                                                             clus
vv                                                            OR10R2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              165
D109V6, multiclass
    clus
vv   OR10R2 MUTATED OR10R2 WILD-TYPE
  T1              3               33
  T2              3              113
  T3              0               14
  T4              1               11
D109V7, multiclass
    clus
vv   OR10R2 MUTATED OR10R2 WILD-TYPE
  N0              4              113
  N1              2               37
  N2              1               16
  N3              0                5
D109V8, multiclass
    clus
vv   OR10R2 MUTATED OR10R2 WILD-TYPE
  M0              6              159
  M1              0                3
  MX              0                6
D109V9, multiclass
        clus
vv       OR10R2 MUTATED OR10R2 WILD-TYPE
  I                   4               93
  II                  1               37
  III+IV              2               39
D109V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10R2 MUTATED      0    7
  OR10R2 WILD-TYPE    4  167
     clus
vv    OR10R2 MUTATED OR10R2 WILD-TYPE
  NO               0                4
  YES              7              167
D109V11, continuous
D109V12, continuous
D109V13, multiclass
                                             clus
vv                                            OR10R2 MUTATED OR10R2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D109V14, continuous

Clustering(110) Variable = OR5AS1 MUTATION ANALYSIS
D110V1, survival
                  sevent
clus2               0  1
  OR5AS1 MUTATED    6  1
  OR5AS1 WILD-TYPE 91 69
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              160 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               1               69 
$`OR5AS1 MUTATED`
TCGA-18-3409 TCGA-18-4721 TCGA-33-4566 TCGA-39-5031 TCGA-39-5036 TCGA-43-3920 
       79.46        90.51       173.79        27.35        35.64        18.84 
TCGA-66-2734 
       43.10 

$`OR5AS1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
        1.71        24.33         1.94        15.58         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 
       22.78         1.22        23.64        11.77        16.96        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
           18.84             0.10 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
          173.79           141.34 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
          43.100           15.565 
[1] "18.8 - 173.8 (43.1)" "0.1 - 141.3 (15.6)" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D110V2, continuous
D110V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AS1 MUTATED      2    5
  OR5AS1 WILD-TYPE   45  126
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  FEMALE              2               45
  MALE                5              126
D110V4, continuous
D110V5, multiclass
                                                             clus
vv                                                            OR5AS1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            OR5AS1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
D110V6, multiclass
    clus
vv   OR5AS1 MUTATED OR5AS1 WILD-TYPE
  T1              3               33
  T2              4              112
  T3              0               14
  T4              0               12
D110V7, multiclass
    clus
vv   OR5AS1 MUTATED OR5AS1 WILD-TYPE
  N0              7              110
  N1              0               39
  N2              0               17
  N3              0                5
D110V8, multiclass
    clus
vv   OR5AS1 MUTATED OR5AS1 WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
D110V9, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  I                   6               91
  II                  0               38
  III+IV              0               41
D110V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AS1 MUTATED      0    7
  OR5AS1 WILD-TYPE    4  167
     clus
vv    OR5AS1 MUTATED OR5AS1 WILD-TYPE
  NO               0                4
  YES              7              167
D110V11, continuous
D110V12, continuous
D110V13, multiclass
                                             clus
vv                                            OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D110V14, continuous

Clustering(111) Variable = OR5K1 MUTATION ANALYSIS
D111V1, survival
                 sevent
clus2              0  1
  OR5K1 MUTATED    3  3
  OR5K1 WILD-TYPE 94 67
  OR5K1 MUTATED OR5K1 WILD-TYPE 
              6             161 
  OR5K1 MUTATED OR5K1 WILD-TYPE 
              3              67 
$`OR5K1 MUTATED`
TCGA-18-3409 TCGA-22-5489 TCGA-37-5819 TCGA-51-4079 TCGA-60-2726 TCGA-66-2795 
       79.46        62.86         3.39         0.39        11.77         4.01 

$`OR5K1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       26.07        24.10        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08        49.05         0.36         0.79 

  OR5K1 MUTATED OR5K1 WILD-TYPE 
           0.39            0.10 
  OR5K1 MUTATED OR5K1 WILD-TYPE 
          79.46          173.79 
  OR5K1 MUTATED OR5K1 WILD-TYPE 
           7.89           18.08 
[1] "0.4 - 79.5 (7.9)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" "OR5K1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5K1 MUTATED" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" "OR5K1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5K1 WILD-TYPE"   "OR5K1 MUTATED" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" "OR5K1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5K1 MUTATED" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" "OR5K1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5K1 WILD-TYPE"   "OR5K1 MUTATED" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" "OR5K1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5K1 MUTATED" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" "OR5K1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5K1 WILD-TYPE"   "OR5K1 MUTATED" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE"   "OR5K1 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" "OR5K1 WILD-TYPE" 
[1] "hr=" "1.2"
D111V2, continuous
D111V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5K1 MUTATED      1    6
  OR5K1 WILD-TYPE   46  125
        clus
vv       OR5K1 MUTATED OR5K1 WILD-TYPE
  FEMALE             1              46
  MALE               6             125
D111V4, continuous
D111V5, multiclass
                                                             clus
vv                                                            OR5K1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            OR5K1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D111V6, multiclass
    clus
vv   OR5K1 MUTATED OR5K1 WILD-TYPE
  T1             2              34
  T2             4             112
  T3             0              14
  T4             1              11
D111V7, multiclass
    clus
vv   OR5K1 MUTATED OR5K1 WILD-TYPE
  N0             4             113
  N1             2              37
  N2             1              16
  N3             0               5
D111V8, multiclass
    clus
vv   OR5K1 MUTATED OR5K1 WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
D111V9, multiclass
        clus
vv       OR5K1 MUTATED OR5K1 WILD-TYPE
  I                  3              94
  II                 1              37
  III+IV             2              39
D111V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5K1 MUTATED      0    7
  OR5K1 WILD-TYPE    4  167
     clus
vv    OR5K1 MUTATED OR5K1 WILD-TYPE
  NO              0               4
  YES             7             167
D111V11, continuous
D111V12, continuous
D111V13, multiclass
                                             clus
vv                                            OR5K1 MUTATED OR5K1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D111V14, continuous

Clustering(112) Variable = RSRC1 MUTATION ANALYSIS
D112V1, survival
                 sevent
clus2              0  1
  RSRC1 MUTATED    5  2
  RSRC1 WILD-TYPE 92 68
  RSRC1 MUTATED RSRC1 WILD-TYPE 
              7             160 
  RSRC1 MUTATED RSRC1 WILD-TYPE 
              2              68 
$`RSRC1 MUTATED`
TCGA-22-5471 TCGA-22-5477 TCGA-34-5231 TCGA-34-5928 TCGA-66-2773 TCGA-66-2795 
       31.69        44.22        50.24         5.52         3.02         4.01 
TCGA-85-6561 
        0.79 

$`RSRC1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        13.12        19.30        11.77        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       63.52        14.60         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        32.84        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 
       10.82         7.73        14.07        22.95         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        1.02         2.01         2.01        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 
       10.06        54.08        49.05         0.36 

  RSRC1 MUTATED RSRC1 WILD-TYPE 
           0.79            0.10 
  RSRC1 MUTATED RSRC1 WILD-TYPE 
          50.24          173.79 
  RSRC1 MUTATED RSRC1 WILD-TYPE 
           5.52           17.98 
[1] "0.8 - 50.2 (5.5)"   "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE"   "RSRC1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE"   "RSRC1 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE"   "RSRC1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE"   "RSRC1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE"   "RSRC1 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE"   "RSRC1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"RSRC1 WILD-TYPE"   "RSRC1 MUTATED" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE"   "RSRC1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE"   "RSRC1 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE"   "RSRC1 MUTATED" 
[1] "hr=" "1.1"
D112V2, continuous
D112V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RSRC1 MUTATED      1    6
  RSRC1 WILD-TYPE   46  125
        clus
vv       RSRC1 MUTATED RSRC1 WILD-TYPE
  FEMALE             1              46
  MALE               6             125
D112V4, continuous
[1] "Remove cluster labels:" "RSRC1 MUTATED"         
clus
  RSRC1 MUTATED RSRC1 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" "RSRC1 WILD-TYPE" 
D112V5, multiclass
                                                             clus
vv                                                            RSRC1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            RSRC1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D112V6, multiclass
    clus
vv   RSRC1 MUTATED RSRC1 WILD-TYPE
  T1             2              34
  T2             4             112
  T3             0              14
  T4             1              11
D112V7, multiclass
    clus
vv   RSRC1 MUTATED RSRC1 WILD-TYPE
  N0             5             112
  N1             2              37
  N2             0              17
  N3             0               5
D112V8, multiclass
    clus
vv   RSRC1 MUTATED RSRC1 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
D112V9, multiclass
        clus
vv       RSRC1 MUTATED RSRC1 WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             1              40
D112V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  RSRC1 MUTATED      1    6
  RSRC1 WILD-TYPE    3  168
     clus
vv    RSRC1 MUTATED RSRC1 WILD-TYPE
  NO              1               3
  YES             6             168
D112V11, continuous
D112V12, continuous
D112V13, multiclass
                                             clus
vv                                            RSRC1 MUTATED RSRC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D112V14, continuous

Clustering(113) Variable = C3ORF59 MUTATION ANALYSIS
D113V1, survival
                   sevent
clus2                0  1
  C3ORF59 MUTATED    6  3
  C3ORF59 WILD-TYPE 91 67
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
                9               158 
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
                3                67 
$`C3ORF59 MUTATED`
TCGA-18-3415 TCGA-21-1071 TCGA-21-1077 TCGA-33-4582 TCGA-37-3783 TCGA-43-2578 
       59.51        46.88        34.78       103.53         3.95        18.08 
TCGA-60-2711 TCGA-66-2785 TCGA-66-2787 
       29.19         1.94        40.01 

$`C3ORF59 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 
        7.73        14.07        22.95         5.52         4.96         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       21.70        68.45        49.48        55.40         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
        3.98        12.00        24.95        25.97        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
             1.94              0.10 
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
           103.53            173.79 
  C3ORF59 MUTATED C3ORF59 WILD-TYPE 
            34.78             16.09 
[1] "1.9 - 103.5 (34.8)" "0.1 - 173.8 (16.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE"   "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "C3ORF59 MUTATED" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" "C3ORF59 WILD-TYPE" 
[1] "hr=" "1.9"
D113V2, continuous
D113V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C3ORF59 MUTATED      2    7
  C3ORF59 WILD-TYPE   45  124
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  FEMALE               2                45
  MALE                 7               124
D113V4, continuous
D113V5, multiclass
                                                             clus
vv                                                            C3ORF59 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               9
                                                             clus
vv                                                            C3ORF59 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               163
D113V6, multiclass
    clus
vv   C3ORF59 MUTATED C3ORF59 WILD-TYPE
  T1               3                33
  T2               5               111
  T3               1                13
  T4               0                12
D113V7, multiclass
    clus
vv   C3ORF59 MUTATED C3ORF59 WILD-TYPE
  N0               7               110
  N1               1                38
  N2               1                16
  N3               0                 5
D113V8, multiclass
    clus
vv   C3ORF59 MUTATED C3ORF59 WILD-TYPE
  M0               9               156
  M1               0                 3
  MX               0                 6
D113V9, multiclass
        clus
vv       C3ORF59 MUTATED C3ORF59 WILD-TYPE
  I                    7                90
  II                   1                37
  III+IV               1                40
D113V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  C3ORF59 MUTATED      0    9
  C3ORF59 WILD-TYPE    4  165
     clus
vv    C3ORF59 MUTATED C3ORF59 WILD-TYPE
  NO                0                 4
  YES               9               165
D113V11, continuous
D113V12, continuous
D113V13, multiclass
                                             clus
vv                                            C3ORF59 MUTATED C3ORF59 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                 8
D113V14, continuous

Clustering(114) Variable = KCND2 MUTATION ANALYSIS
D114V1, survival
                 sevent
clus2              0  1
  KCND2 MUTATED    5  7
  KCND2 WILD-TYPE 92 63
  KCND2 MUTATED KCND2 WILD-TYPE 
             12             155 
  KCND2 MUTATED KCND2 WILD-TYPE 
              7              63 
$`KCND2 MUTATED`
TCGA-18-3410 TCGA-21-1076 TCGA-22-1016 TCGA-22-4599 TCGA-22-5478 TCGA-22-5491 
        4.80        60.89        27.02        38.17         0.79        56.32 
TCGA-33-4566 TCGA-37-3783 TCGA-51-4079 TCGA-60-2722 TCGA-66-2785 TCGA-66-2795 
      173.79         3.95         0.39        24.10         1.94         4.01 

$`KCND2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       46.88        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        24.13        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 
       71.34        11.74        30.08        62.86        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08        49.05         0.36         0.79 

  KCND2 MUTATED KCND2 WILD-TYPE 
           0.39            0.10 
  KCND2 MUTATED KCND2 WILD-TYPE 
         173.79          141.34 
  KCND2 MUTATED KCND2 WILD-TYPE 
          14.45           17.88 
[1] "0.4 - 173.8 (14.5)" "0.1 - 141.3 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" "KCND2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE"   "KCND2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
[1] "hr=" "1.2"
D114V2, continuous
D114V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCND2 MUTATED      3    9
  KCND2 WILD-TYPE   44  122
        clus
vv       KCND2 MUTATED KCND2 WILD-TYPE
  FEMALE             3              44
  MALE               9             122
D114V4, continuous
D114V5, multiclass
                                                             clus
vv                                                            KCND2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            KCND2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
D114V6, multiclass
    clus
vv   KCND2 MUTATED KCND2 WILD-TYPE
  T1             1              35
  T2             8             108
  T3             2              12
  T4             1              11
D114V7, multiclass
    clus
vv   KCND2 MUTATED KCND2 WILD-TYPE
  N0             9             108
  N1             2              37
  N2             1              16
  N3             0               5
D114V8, multiclass
    clus
vv   KCND2 MUTATED KCND2 WILD-TYPE
  M0            11             154
  M1             0               3
  MX             0               6
D114V9, multiclass
        clus
vv       KCND2 MUTATED KCND2 WILD-TYPE
  I                  8              89
  II                 1              37
  III+IV             3              38
D114V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCND2 MUTATED      0   12
  KCND2 WILD-TYPE    4  162
     clus
vv    KCND2 MUTATED KCND2 WILD-TYPE
  NO              0               4
  YES            12             162
D114V11, continuous
D114V12, continuous
D114V13, multiclass
                                             clus
vv                                            KCND2 MUTATED KCND2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0               8
D114V14, continuous
[1] "Remove cluster labels:" "KCND2 MUTATED"         
clus
  KCND2 MUTATED KCND2 WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5782 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-21-5786      TCGA-21-5787      TCGA-22-0944      TCGA-22-1002 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-1012      TCGA-22-4591      TCGA-22-4593 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-4607      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5480      TCGA-22-5482      TCGA-22-5492 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4582      TCGA-33-4583 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-33-4586      TCGA-34-5240      TCGA-34-5241      TCGA-37-4133 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5021      TCGA-39-5022 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-39-5037      TCGA-39-5039      TCGA-43-2578      TCGA-43-3394 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-43-3920      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-43-6771      TCGA-56-1622      TCGA-56-5898      TCGA-56-6545 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2707      TCGA-60-2708      TCGA-60-2709 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2713 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2715      TCGA-60-2719      TCGA-60-2720      TCGA-60-2721 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-60-2723      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCND2 WILD-TYPE" "KCND2 WILD-TYPE" "KCND2 WILD-TYPE" 

Clustering(115) Variable = BMP5 MUTATION ANALYSIS
D115V1, survival
                sevent
clus2             0  1
  BMP5 MUTATED    5  2
  BMP5 WILD-TYPE 92 68
  BMP5 MUTATED BMP5 WILD-TYPE 
             7            160 
  BMP5 MUTATED BMP5 WILD-TYPE 
             2             68 
$`BMP5 MUTATED`
TCGA-18-3416 TCGA-37-5819 TCGA-39-5036 TCGA-66-2756 TCGA-66-2789 TCGA-66-2791 
       28.34         3.39        35.64         0.99         4.04         5.03 
TCGA-66-2800 
       49.05 

$`BMP5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2792 TCGA-66-2793 
        1.94        25.97        40.01        22.98        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01         0.36         0.79 

  BMP5 MUTATED BMP5 WILD-TYPE 
          0.99           0.10 
  BMP5 MUTATED BMP5 WILD-TYPE 
         49.05         173.79 
  BMP5 MUTATED BMP5 WILD-TYPE 
          5.03          17.98 
[1] "1.0 - 49.0 (5.0)"   "0.1 - 173.8 (18.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"BMP5 WILD-TYPE"   "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE"   "BMP5 MUTATED"   "BMP5 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"BMP5 WILD-TYPE"   "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE"   "BMP5 MUTATED"   "BMP5 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"BMP5 WILD-TYPE"   "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE"   "BMP5 MUTATED"   "BMP5 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "BMP5 MUTATED" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
[1] "hr=" "1.1"
D115V2, continuous
D115V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BMP5 MUTATED      0    8
  BMP5 WILD-TYPE   47  123
        clus
vv       BMP5 MUTATED BMP5 WILD-TYPE
  FEMALE            0             47
  MALE              8            123
D115V4, continuous
[1] "Remove cluster labels:" "BMP5 MUTATED"          
clus
  BMP5 MUTATED BMP5 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-22-5492     TCGA-34-5234     TCGA-37-4133     TCGA-37-4135 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"BMP5 WILD-TYPE" "BMP5 WILD-TYPE" "BMP5 WILD-TYPE" 
D115V5, multiclass
                                                             clus
vv                                                            BMP5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            8
                                                             clus
vv                                                            BMP5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            164
D115V6, multiclass
    clus
vv   BMP5 MUTATED BMP5 WILD-TYPE
  T1            1             35
  T2            4            112
  T3            0             14
  T4            3              9
D115V7, multiclass
    clus
vv   BMP5 MUTATED BMP5 WILD-TYPE
  N0            4            113
  N1            1             38
  N2            1             16
  N3            2              3
D115V8, multiclass
    clus
vv   BMP5 MUTATED BMP5 WILD-TYPE
  M0            8            157
  M1            0              3
  MX            0              6
D115V9, multiclass
        clus
vv       BMP5 MUTATED BMP5 WILD-TYPE
  I                 1             96
  II                2             36
  III+IV            5             36
D115V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  BMP5 MUTATED      0    8
  BMP5 WILD-TYPE    4  166
     clus
vv    BMP5 MUTATED BMP5 WILD-TYPE
  NO             0              4
  YES            8            166
D115V11, continuous
D115V12, continuous
D115V13, multiclass
                                             clus
vv                                            BMP5 MUTATED BMP5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0              8
D115V14, continuous

Clustering(116) Variable = CDH20 MUTATION ANALYSIS
D116V1, survival
                 sevent
clus2              0  1
  CDH20 MUTATED    6  5
  CDH20 WILD-TYPE 91 65
  CDH20 MUTATED CDH20 WILD-TYPE 
             11             156 
  CDH20 MUTATED CDH20 WILD-TYPE 
              5              65 
$`CDH20 MUTATED`
TCGA-18-4083 TCGA-22-0944 TCGA-22-4599 TCGA-22-5482 TCGA-34-5239 TCGA-43-3920 
        6.15         7.33        38.17        11.74        10.82        18.84 
TCGA-56-1622 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-85-6561 
       28.93         0.99         2.01         0.99         0.79 

$`CDH20 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57        10.82         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       27.02        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        71.34        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 
       32.84        50.24        51.78        32.68         9.04         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
        2.07         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 

  CDH20 MUTATED CDH20 WILD-TYPE 
           0.79            0.10 
  CDH20 MUTATED CDH20 WILD-TYPE 
          38.17          173.79 
  CDH20 MUTATED CDH20 WILD-TYPE 
           7.33           19.00 
[1] "0.8 - 38.2 (7.3)"   "0.1 - 173.8 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CDH20 WILD-TYPE"   "CDH20 MUTATED"   "CDH20 MUTATED" "CDH20 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE"   "CDH20 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CDH20 WILD-TYPE"   "CDH20 MUTATED"   "CDH20 MUTATED" "CDH20 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE"   "CDH20 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CDH20 WILD-TYPE"   "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CDH20 WILD-TYPE"   "CDH20 MUTATED"   "CDH20 MUTATED" "CDH20 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "CDH20 MUTATED" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE"   "CDH20 MUTATED" 
[1] "hr=" "2.3"
D116V2, continuous
D116V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH20 MUTATED      1   10
  CDH20 WILD-TYPE   46  121
        clus
vv       CDH20 MUTATED CDH20 WILD-TYPE
  FEMALE             1              46
  MALE              10             121
D116V4, continuous
[1] "Remove cluster labels:" "CDH20 MUTATED"         
clus
  CDH20 MUTATED CDH20 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4601      TCGA-22-4604 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5485 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"CDH20 WILD-TYPE" "CDH20 WILD-TYPE" 
D116V5, multiclass
                                                             clus
vv                                                            CDH20 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            CDH20 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
D116V6, multiclass
    clus
vv   CDH20 MUTATED CDH20 WILD-TYPE
  T1             0              36
  T2             9             107
  T3             0              14
  T4             2              10
D116V7, multiclass
    clus
vv   CDH20 MUTATED CDH20 WILD-TYPE
  N0             8             109
  N1             2              37
  N2             1              16
  N3             0               5
D116V8, multiclass
    clus
vv   CDH20 MUTATED CDH20 WILD-TYPE
  M0            11             154
  M1             0               3
  MX             0               6
D116V9, multiclass
        clus
vv       CDH20 MUTATED CDH20 WILD-TYPE
  I                  5              92
  II                 3              35
  III+IV             3              38
D116V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CDH20 MUTATED      0   11
  CDH20 WILD-TYPE    4  163
     clus
vv    CDH20 MUTATED CDH20 WILD-TYPE
  NO              0               4
  YES            11             163
D116V11, continuous
D116V12, continuous
D116V13, multiclass
                                             clus
vv                                            CDH20 MUTATED CDH20 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              43
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0               8
D116V14, continuous

Clustering(117) Variable = KRTAP10-7 MUTATION ANALYSIS
D117V1, survival
                     sevent
clus2                  0  1
  KRTAP10-7 MUTATED    3  3
  KRTAP10-7 WILD-TYPE 94 67
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  6                 161 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  3                  67 
$`KRTAP10-7 MUTATED`
TCGA-18-4083 TCGA-18-4086 TCGA-34-5232 TCGA-39-5028 TCGA-66-2767 TCGA-66-2785 
        6.15         2.79        51.78         1.71         2.01         1.94 

$`KRTAP10-7 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
       43.76        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        32.84        50.24        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
               1.71                0.10 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
              51.78              173.79 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
               2.40               18.84 
[1] "1.7 - 51.8 (2.4)"   "0.1 - 173.8 (18.8)"
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED"   "KRTAP10-7 MUTATED" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED"   "KRTAP10-7 MUTATED" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED"   "KRTAP10-7 MUTATED" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
[1] "hr=" "3.1"
D117V2, continuous
D117V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP10-7 MUTATED      1    6
  KRTAP10-7 WILD-TYPE   46  125
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  FEMALE                 1                  46
  MALE                   6                 125
D117V4, continuous
D117V5, multiclass
                                                             clus
vv                                                            KRTAP10-7 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 7
                                                             clus
vv                                                            KRTAP10-7 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                         5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                        1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 165
D117V6, multiclass
    clus
vv   KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  T1                 2                  34
  T2                 4                 112
  T3                 0                  14
  T4                 1                  11
D117V7, multiclass
    clus
vv   KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  N0                 3                 114
  N1                 3                  36
  N2                 0                  17
  N3                 1                   4
D117V8, multiclass
    clus
vv   KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  M0                 7                 158
  M1                 0                   3
  MX                 0                   6
D117V9, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  I                      3                  94
  II                     2                  36
  III+IV                 2                  39
D117V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP10-7 MUTATED      0    7
  KRTAP10-7 WILD-TYPE    4  167
     clus
vv    KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  NO                  0                   4
  YES                 7                 167
D117V11, continuous
D117V12, continuous
D117V13, multiclass
                                             clus
vv                                            KRTAP10-7 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      2
  CURRENT SMOKER                                              1
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP10-7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       41
  CURRENT SMOKER                                               27
  LIFELONG NON-SMOKER                                           8
D117V14, continuous
[1] "Remove cluster labels:" "KRTAP10-7 MUTATED"     
clus
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  2                 103 
         TCGA-18-3406          TCGA-18-3417          TCGA-21-1078 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5786          TCGA-21-5787 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-0944          TCGA-22-1002          TCGA-22-1011 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1012          TCGA-22-1016          TCGA-22-4591 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4593          TCGA-22-4607          TCGA-22-4613 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5480          TCGA-22-5482          TCGA-22-5492 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4547          TCGA-33-4582 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4583          TCGA-33-4586          TCGA-34-5240 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5241          TCGA-37-4133          TCGA-37-4135 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-5819          TCGA-39-5021          TCGA-39-5022 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5024          TCGA-39-5027          TCGA-39-5029 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5030          TCGA-39-5031          TCGA-39-5035 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5036          TCGA-39-5037          TCGA-39-5039 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-2578          TCGA-43-3394          TCGA-43-3920 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-56-1622          TCGA-56-5898 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2707 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2708          TCGA-60-2709          TCGA-60-2710 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2711          TCGA-60-2712          TCGA-60-2713 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2715          TCGA-60-2719          TCGA-60-2720 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2721          TCGA-60-2723          TCGA-60-2724 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2725          TCGA-60-2726          TCGA-63-6202 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2727          TCGA-66-2734          TCGA-66-2742 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2744          TCGA-66-2754          TCGA-66-2755 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2756          TCGA-66-2757          TCGA-66-2758 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2759          TCGA-66-2763          TCGA-66-2765 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2766          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2786          TCGA-66-2787 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2788          TCGA-66-2789          TCGA-66-2791 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2792          TCGA-66-2793          TCGA-66-2794 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2795          TCGA-66-2800          TCGA-85-6560 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" 

Clustering(118) Variable = OR6K2 MUTATION ANALYSIS
D118V1, survival
                 sevent
clus2              0  1
  OR6K2 MUTATED    5  2
  OR6K2 WILD-TYPE 92 68
  OR6K2 MUTATED OR6K2 WILD-TYPE 
              7             160 
  OR6K2 MUTATED OR6K2 WILD-TYPE 
              2              68 
$`OR6K2 MUTATED`
TCGA-18-3419 TCGA-21-1076 TCGA-22-4613 TCGA-39-5019 TCGA-56-6546 TCGA-60-2698 
        1.61        60.89        11.77        44.71         1.02        10.22 
TCGA-60-2722 
       24.10 

$`OR6K2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       46.88        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       47.87        35.34        30.61         3.16        26.07        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR6K2 MUTATED OR6K2 WILD-TYPE 
           1.02            0.10 
  OR6K2 MUTATED OR6K2 WILD-TYPE 
          60.89          173.79 
  OR6K2 MUTATED OR6K2 WILD-TYPE 
          11.77           17.98 
[1] "1.0 - 60.9 (11.8)"  "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE"   "OR6K2 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
  "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE"   "OR6K2 MUTATED" "OR6K2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "OR6K2 MUTATED"   "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K2 WILD-TYPE"   "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE"   "OR6K2 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
  "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE"   "OR6K2 MUTATED" "OR6K2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "OR6K2 MUTATED"   "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K2 WILD-TYPE"   "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE"   "OR6K2 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
  "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE"   "OR6K2 MUTATED" "OR6K2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "OR6K2 MUTATED"   "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K2 WILD-TYPE"   "OR6K2 MUTATED" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
[1] "hr=" "1.2"
D118V2, continuous
D118V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K2 MUTATED      2    5
  OR6K2 WILD-TYPE   45  126
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  FEMALE             2              45
  MALE               5             126
D118V4, continuous
D118V5, multiclass
                                                             clus
vv                                                            OR6K2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR6K2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D118V6, multiclass
    clus
vv   OR6K2 MUTATED OR6K2 WILD-TYPE
  T1             1              35
  T2             6             110
  T3             0              14
  T4             0              12
D118V7, multiclass
    clus
vv   OR6K2 MUTATED OR6K2 WILD-TYPE
  N0             4             113
  N1             3              36
  N2             0              17
  N3             0               5
D118V8, multiclass
    clus
vv   OR6K2 MUTATED OR6K2 WILD-TYPE
  M0             6             159
  M1             0               3
  MX             1               5
D118V9, multiclass
        clus
vv       OR6K2 MUTATED OR6K2 WILD-TYPE
  I                  3              94
  II                 3              35
  III+IV             0              41
D118V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K2 MUTATED      0    7
  OR6K2 WILD-TYPE    4  167
     clus
vv    OR6K2 MUTATED OR6K2 WILD-TYPE
  NO              0               4
  YES             7             167
D118V11, continuous
D118V12, continuous
D118V13, multiclass
                                             clus
vv                                            OR6K2 MUTATED OR6K2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D118V14, continuous
[1] "Remove cluster labels:" "OR6K2 MUTATED"         
clus
  OR6K2 MUTATED OR6K2 WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5782 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-21-5786      TCGA-21-5787      TCGA-22-0944      TCGA-22-1002 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-1012      TCGA-22-1016      TCGA-22-4591 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-5472      TCGA-22-5473 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5480      TCGA-22-5482      TCGA-22-5492 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4582      TCGA-33-4583 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-33-4586      TCGA-34-5240      TCGA-34-5241      TCGA-37-4133 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5021      TCGA-39-5022 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-39-5037      TCGA-39-5039      TCGA-43-2578      TCGA-43-3394 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-43-3920      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-43-6771      TCGA-56-1622      TCGA-56-5898      TCGA-56-6545 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2715 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2719      TCGA-60-2720      TCGA-60-2721      TCGA-60-2723 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-6202 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2786 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" "OR6K2 WILD-TYPE" 

Clustering(119) Variable = CXORF66 MUTATION ANALYSIS
D119V1, survival
                   sevent
clus2                0  1
  CXORF66 MUTATED    4  3
  CXORF66 WILD-TYPE 93 67
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                7               160 
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                3                67 
$`CXORF66 MUTATED`
TCGA-18-3419 TCGA-21-5786 TCGA-22-4613 TCGA-33-4532 TCGA-39-5036 TCGA-46-3768 
        1.61        21.57        11.77        82.98        35.64         9.96 
TCGA-66-2727 
       16.96 

$`CXORF66 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.35        15.58         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.79         5.42         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 
       22.78         1.22        23.64        11.77        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  CXORF66 MUTATED CXORF66 WILD-TYPE 
             1.61              0.10 
  CXORF66 MUTATED CXORF66 WILD-TYPE 
            82.98            173.79 
  CXORF66 MUTATED CXORF66 WILD-TYPE 
            16.96             17.98 
[1] "1.6 - 83.0 (17.0)"  "0.1 - 173.8 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CXORF66 MUTATED" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE"   "CXORF66 MUTATED" "CXORF66 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
[1] "hr=" "1"  
D119V2, continuous
D119V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF66 MUTATED      2    5
  CXORF66 WILD-TYPE   45  126
        clus
vv       CXORF66 MUTATED CXORF66 WILD-TYPE
  FEMALE               2                45
  MALE                 5               126
D119V4, continuous
[1] "Remove cluster labels:" "CXORF66 MUTATED"       
clus
  CXORF66 MUTATED CXORF66 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5787        TCGA-22-4591        TCGA-22-4593 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5472        TCGA-22-5473        TCGA-22-5474        TCGA-22-5477 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5478        TCGA-22-5480        TCGA-22-5482        TCGA-22-5485 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-34-5234 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-5819        TCGA-60-2698 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"CXORF66 WILD-TYPE" "CXORF66 WILD-TYPE" 
D119V5, multiclass
                                                             clus
vv                                                            CXORF66 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               7
                                                             clus
vv                                                            CXORF66 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               165
D119V6, multiclass
    clus
vv   CXORF66 MUTATED CXORF66 WILD-TYPE
  T1               1                35
  T2               5               111
  T3               1                13
  T4               0                12
D119V7, multiclass
    clus
vv   CXORF66 MUTATED CXORF66 WILD-TYPE
  N0               5               112
  N1               2                37
  N2               0                17
  N3               0                 5
D119V8, multiclass
    clus
vv   CXORF66 MUTATED CXORF66 WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
D119V9, multiclass
        clus
vv       CXORF66 MUTATED CXORF66 WILD-TYPE
  I                    5                92
  II                   1                37
  III+IV               1                40
D119V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CXORF66 MUTATED      0    7
  CXORF66 WILD-TYPE    4  167
     clus
vv    CXORF66 MUTATED CXORF66 WILD-TYPE
  NO                0                 4
  YES               7               167
D119V11, continuous
D119V12, continuous
D119V13, multiclass
                                             clus
vv                                            CXORF66 MUTATED CXORF66 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                 8
D119V14, continuous

Clustering(120) Variable = GAP43 MUTATION ANALYSIS
D120V1, survival
                 sevent
clus2              0  1
  GAP43 MUTATED    4  2
  GAP43 WILD-TYPE 93 68
  GAP43 MUTATED GAP43 WILD-TYPE 
              6             161 
  GAP43 MUTATED GAP43 WILD-TYPE 
              2              68 
$`GAP43 MUTATED`
TCGA-22-5471 TCGA-22-5491 TCGA-39-5039 TCGA-60-2725 TCGA-66-2766 TCGA-66-2787 
       31.69        56.32        17.88        23.64         1.02        40.01 

$`GAP43 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        13.12        19.30        11.77        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       35.64         0.79        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 
        3.16        26.07        24.10        22.78         1.22        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  GAP43 MUTATED GAP43 WILD-TYPE 
           1.02            0.10 
  GAP43 MUTATED GAP43 WILD-TYPE 
          56.32          173.79 
  GAP43 MUTATED GAP43 WILD-TYPE 
         27.665          16.600 
[1] "1.0 - 56.3 (27.7)"  "0.1 - 173.8 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"GAP43 WILD-TYPE"   "GAP43 MUTATED" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE"   "GAP43 MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE"   "GAP43 MUTATED" "GAP43 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "GAP43 MUTATED" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE"   "GAP43 MUTATED" "GAP43 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "GAP43 MUTATED" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"GAP43 WILD-TYPE"   "GAP43 MUTATED" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE"   "GAP43 MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE"   "GAP43 MUTATED" "GAP43 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "GAP43 MUTATED" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE"   "GAP43 MUTATED" "GAP43 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "GAP43 MUTATED" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"GAP43 WILD-TYPE"   "GAP43 MUTATED" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE"   "GAP43 MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE"   "GAP43 MUTATED" "GAP43 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "GAP43 MUTATED" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE"   "GAP43 MUTATED" "GAP43 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "GAP43 MUTATED" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
[1] "hr=" "1.4"
D120V2, continuous
D120V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GAP43 MUTATED      0    6
  GAP43 WILD-TYPE   47  125
        clus
vv       GAP43 MUTATED GAP43 WILD-TYPE
  FEMALE             0              47
  MALE               6             125
D120V4, continuous
[1] "Remove cluster labels:" "GAP43 MUTATED"         
clus
  GAP43 MUTATED GAP43 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5492 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2726 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"GAP43 WILD-TYPE" "GAP43 WILD-TYPE" 
D120V5, multiclass
                                                             clus
vv                                                            GAP43 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            GAP43 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D120V6, multiclass
    clus
vv   GAP43 MUTATED GAP43 WILD-TYPE
  T1             2              34
  T2             4             112
  T3             0              14
  T4             0              12
D120V7, multiclass
    clus
vv   GAP43 MUTATED GAP43 WILD-TYPE
  N0             5             112
  N1             0              39
  N2             1              16
  N3             0               5
D120V8, multiclass
    clus
vv   GAP43 MUTATED GAP43 WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
D120V9, multiclass
        clus
vv       GAP43 MUTATED GAP43 WILD-TYPE
  I                  4              93
  II                 1              37
  III+IV             1              40
D120V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  GAP43 MUTATED      1    5
  GAP43 WILD-TYPE    3  169
     clus
vv    GAP43 MUTATED GAP43 WILD-TYPE
  NO              1               3
  YES             5             169
D120V11, continuous
D120V12, continuous
D120V13, multiclass
                                             clus
vv                                            GAP43 MUTATED GAP43 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D120V14, continuous

Clustering(121) Variable = KCNN2 MUTATION ANALYSIS
D121V1, survival
                 sevent
clus2              0  1
  KCNN2 MUTATED    6  4
  KCNN2 WILD-TYPE 91 66
  KCNN2 MUTATED KCNN2 WILD-TYPE 
             10             157 
  KCNN2 MUTATED KCNN2 WILD-TYPE 
              4              66 
$`KCNN2 MUTATED`
TCGA-18-3409 TCGA-18-4086 TCGA-21-5787 TCGA-22-5482 TCGA-33-6737 TCGA-34-5231 
       79.46         2.79        10.82        11.74        19.76        50.24 
TCGA-34-5239 TCGA-66-2763 TCGA-66-2785 TCGA-66-2787 
       10.82         0.99         1.94        40.01 

$`KCNN2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        71.34        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        14.07         2.63        61.61        32.84 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
       12.00        24.95        25.97        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  KCNN2 MUTATED KCNN2 WILD-TYPE 
           0.99            0.10 
  KCNN2 MUTATED KCNN2 WILD-TYPE 
          79.46          173.79 
  KCNN2 MUTATED KCNN2 WILD-TYPE 
          11.28           18.08 
[1] "1.0 - 79.5 (11.3)"  "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
  "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
  "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
  "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE"   "KCNN2 MUTATED" "KCNN2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "KCNN2 MUTATED" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
[1] "hr=" "1.1"
D121V2, continuous
D121V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNN2 MUTATED      1    9
  KCNN2 WILD-TYPE   46  122
        clus
vv       KCNN2 MUTATED KCNN2 WILD-TYPE
  FEMALE             1              46
  MALE               9             122
D121V4, continuous
[1] "Remove cluster labels:" "KCNN2 MUTATED"         
clus
  KCNN2 MUTATED KCNN2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-22-4591      TCGA-22-4593 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5485 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"KCNN2 WILD-TYPE" "KCNN2 WILD-TYPE" 
D121V5, multiclass
                                                             clus
vv                                                            KCNN2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            KCNN2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
D121V6, multiclass
    clus
vv   KCNN2 MUTATED KCNN2 WILD-TYPE
  T1             3              33
  T2             6             110
  T3             0              14
  T4             1              11
D121V7, multiclass
    clus
vv   KCNN2 MUTATED KCNN2 WILD-TYPE
  N0             8             109
  N1             0              39
  N2             2              15
  N3             0               5
D121V8, multiclass
    clus
vv   KCNN2 MUTATED KCNN2 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
D121V9, multiclass
        clus
vv       KCNN2 MUTATED KCNN2 WILD-TYPE
  I                  6              91
  II                 0              38
  III+IV             3              38
D121V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNN2 MUTATED      1    9
  KCNN2 WILD-TYPE    3  165
     clus
vv    KCNN2 MUTATED KCNN2 WILD-TYPE
  NO              1               3
  YES             9             165
D121V11, continuous
D121V12, continuous
D121V13, multiclass
                                             clus
vv                                            KCNN2 MUTATED KCNN2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D121V14, continuous

Clustering(122) Variable = LEPROT MUTATION ANALYSIS
D122V1, survival
                  sevent
clus2               0  1
  LEPROT MUTATED    1  3
  LEPROT WILD-TYPE 96 67
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              163 
  LEPROT MUTATED LEPROT WILD-TYPE 
               3               67 
$`LEPROT MUTATED`
TCGA-22-1002 TCGA-22-4595 TCGA-66-2727 TCGA-66-2744 
        4.31        24.13        16.96         0.99 

$`LEPROT WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 
       31.63        29.85        21.57        10.82         7.33         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        20.45        35.08        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 
       23.64        11.77        43.10        21.07         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  LEPROT MUTATED LEPROT WILD-TYPE 
            0.99             0.10 
  LEPROT MUTATED LEPROT WILD-TYPE 
           24.13           173.79 
  LEPROT MUTATED LEPROT WILD-TYPE 
          10.635           18.080 
[1] "1.0 - 24.1 (10.6)"  "0.1 - 173.8 (18.1)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
[1] "hr=" "3.6"
D122V2, continuous
D122V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LEPROT MUTATED      1    3
  LEPROT WILD-TYPE   46  128
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  FEMALE              1               46
  MALE                3              128
D122V4, continuous
[1] "Remove cluster labels:" "LEPROT MUTATED"        
clus
  LEPROT MUTATED LEPROT WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
D122V5, multiclass
                                                             clus
vv                                                            LEPROT MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              4
                                                             clus
vv                                                            LEPROT WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              168
D122V6, multiclass
    clus
vv   LEPROT MUTATED LEPROT WILD-TYPE
  T1              1               35
  T2              2              114
  T3              1               13
  T4              0               12
D122V7, multiclass
    clus
vv   LEPROT MUTATED LEPROT WILD-TYPE
  N0              2              115
  N1              1               38
  N2              1               16
  N3              0                5
D122V8, multiclass
    clus
vv   LEPROT MUTATED LEPROT WILD-TYPE
  M0              3              162
  M1              0                3
  MX              0                6
D122V9, multiclass
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  I                   2               95
  II                  1               37
  III+IV              1               40
D122V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LEPROT MUTATED      1    3
  LEPROT WILD-TYPE    3  171
     clus
vv    LEPROT MUTATED LEPROT WILD-TYPE
  NO               1                3
  YES              3              171
D122V11, continuous
D122V12, continuous
D122V13, multiclass
                                             clus
vv                                            LEPROT MUTATED LEPROT WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D122V14, continuous

Clustering(123) Variable = EPB41L3 MUTATION ANALYSIS
D123V1, survival
                   sevent
clus2                0  1
  EPB41L3 MUTATED   10  6
  EPB41L3 WILD-TYPE 87 64
  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
               16               151 
  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
                6                64 
$`EPB41L3 MUTATED`
TCGA-18-3417 TCGA-18-4721 TCGA-22-1002 TCGA-22-5473 TCGA-33-4533 TCGA-34-2596 
       24.92        90.51         4.31        63.52       114.05         2.63 
TCGA-34-5231 TCGA-43-2578 TCGA-51-4079 TCGA-51-4080 TCGA-60-2698 TCGA-60-2720 
       50.24        18.08         0.39         0.39        10.22         3.16 
TCGA-60-2725 TCGA-66-2742 TCGA-66-2787 TCGA-66-2800 
       23.64        21.07        40.01        49.05 

$`EPB41L3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57        10.82         7.33         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       16.60        82.98        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 
      141.34        14.07        19.76        61.61        32.84        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 
       15.58        35.64         0.79        17.88        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.95         0.59         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        35.34        30.61        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 
       22.78         1.22        11.77        16.96        43.10         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        25.97        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-85-6560 
        5.03        30.02        10.06        54.08         4.01         0.36 
TCGA-85-6561 
        0.79 

  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
             0.39              0.10 
  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
           114.05            173.79 
  EPB41L3 MUTATED EPB41L3 WILD-TYPE 
           22.355            16.600 
[1] "0.4 - 114.0 (22.4)" "0.1 - 173.8 (16.6)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED"   "EPB41L3 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED"   "EPB41L3 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED"   "EPB41L3 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE"   "EPB41L3 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "EPB41L3 MUTATED" "EPB41L3 WILD-TYPE" "EPB41L3 WILD-TYPE" 
[1] "hr=" "1.4"
D123V2, continuous
D123V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  EPB41L3 MUTATED      4   14
  EPB41L3 WILD-TYPE   43  117
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  FEMALE               4                43
  MALE                14               117
D123V4, continuous
D123V5, multiclass
                                                             clus
vv                                                            EPB41L3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              16
                                                             clus
vv                                                            EPB41L3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               156
D123V6, multiclass
    clus
vv   EPB41L3 MUTATED EPB41L3 WILD-TYPE
  T1               6                30
  T2               8               108
  T3               2                12
  T4               2                10
D123V7, multiclass
    clus
vv   EPB41L3 MUTATED EPB41L3 WILD-TYPE
  N0              13               104
  N1               5                34
  N2               0                17
  N3               0                 5
D123V8, multiclass
    clus
vv   EPB41L3 MUTATED EPB41L3 WILD-TYPE
  M0              14               151
  M1               2                 1
  MX               0                 6
D123V9, multiclass
        clus
vv       EPB41L3 MUTATED EPB41L3 WILD-TYPE
  I                   11                86
  II                   3                35
  III+IV               4                37
D123V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  EPB41L3 MUTATED      0   18
  EPB41L3 WILD-TYPE    4  156
     clus
vv    EPB41L3 MUTATED EPB41L3 WILD-TYPE
  NO                0                 4
  YES              18               156
D123V11, continuous
D123V12, continuous
D123V13, multiclass
                                             clus
vv                                            EPB41L3 MUTATED EPB41L3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              10                84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                38
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       2                 6
D123V14, continuous

Clustering(124) Variable = PACRGL MUTATION ANALYSIS
D124V1, survival
                  sevent
clus2               0  1
  PACRGL MUTATED    4  1
  PACRGL WILD-TYPE 93 69
  PACRGL MUTATED PACRGL WILD-TYPE 
               5              162 
  PACRGL MUTATED PACRGL WILD-TYPE 
               1               69 
$`PACRGL MUTATED`
TCGA-18-4086 TCGA-39-5024 TCGA-43-6770 TCGA-66-2763 TCGA-66-2766 
        2.79        70.03         2.79         0.99         1.02 

$`PACRGL WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         6.02         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 
        0.92         0.99         0.99        20.98        25.02         2.01 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  PACRGL MUTATED PACRGL WILD-TYPE 
            0.99             0.10 
  PACRGL MUTATED PACRGL WILD-TYPE 
           70.03           173.79 
  PACRGL MUTATED PACRGL WILD-TYPE 
            2.79            18.46 
[1] "1.0 - 70.0 (2.8)"   "0.1 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "PACRGL MUTATED" "PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "PACRGL MUTATED" "PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "PACRGL MUTATED" "PACRGL WILD-TYPE"   "PACRGL MUTATED" "PACRGL WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PACRGL WILD-TYPE" "PACRGL WILD-TYPE" "PACRGL WILD-TYPE" 
[1] "hr=" "1.3"
D124V2, continuous
D124V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PACRGL MUTATED      3    2
  PACRGL WILD-TYPE   44  129
        clus
vv       PACRGL MUTATED PACRGL WILD-TYPE
  FEMALE              3               44
  MALE                2              129
D124V4, continuous
D124V5, multiclass
                                                             clus
vv                                                            PACRGL MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              5
                                                             clus
vv                                                            PACRGL WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              167
D124V6, multiclass
    clus
vv   PACRGL MUTATED PACRGL WILD-TYPE
  T1              0               36
  T2              5              111
  T3              0               14
  T4              0               12
D124V7, multiclass
    clus
vv   PACRGL MUTATED PACRGL WILD-TYPE
  N0              3              114
  N1              0               39
  N2              2               15
  N3              0                5
D124V8, multiclass
    clus
vv   PACRGL MUTATED PACRGL WILD-TYPE
  M0              4              161
  M1              0                3
  MX              1                5
D124V9, multiclass
        clus
vv       PACRGL MUTATED PACRGL WILD-TYPE
  I                   3               94
  II                  0               38
  III+IV              2               39
D124V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PACRGL MUTATED      0    5
  PACRGL WILD-TYPE    4  169
     clus
vv    PACRGL MUTATED PACRGL WILD-TYPE
  NO               0                4
  YES              5              169
D124V11, continuous
D124V12, continuous
D124V13, multiclass
                                             clus
vv                                            PACRGL MUTATED PACRGL WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D124V14, continuous

Clustering(125) Variable = MGC26647 MUTATION ANALYSIS
D125V1, survival
                    sevent
clus2                 0  1
  MGC26647 MUTATED    2  4
  MGC26647 WILD-TYPE 95 66
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 6                161 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 4                 66 
$`MGC26647 MUTATED`
TCGA-18-3409 TCGA-22-4599 TCGA-22-5482 TCGA-33-4547 TCGA-34-2608 TCGA-39-5021 
       79.46        38.17        11.74        43.10        32.84        68.58 

$`MGC26647 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22         0.79        71.34        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       56.32        16.60        82.98       114.05        97.94       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  MGC26647 MUTATED MGC26647 WILD-TYPE 
             11.74               0.10 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
             79.46             173.79 
  MGC26647 MUTATED MGC26647 WILD-TYPE 
            40.635             16.600 
[1] "11.7 - 79.5 (40.6)" "0.1 - 173.8 (16.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE"   "MGC26647 MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE"   "MGC26647 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE"   "MGC26647 MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE"   "MGC26647 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
  "MGC26647 MUTATED" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE"   "MGC26647 MUTATED" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"MGC26647 WILD-TYPE"   "MGC26647 MUTATED" "MGC26647 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE"   "MGC26647 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
[1] "hr=" "1.1"
D125V2, continuous
D125V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      1    5
  MGC26647 WILD-TYPE   46  126
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  FEMALE                1                 46
  MALE                  5                126
D125V4, continuous
[1] "Remove cluster labels:" "MGC26647 MUTATED"      
clus
  MGC26647 MUTATED MGC26647 WILD-TYPE 
                 2                 34 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3410 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-18-3414         TCGA-18-3419         TCGA-21-5782 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-4591         TCGA-22-4593 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4601         TCGA-22-4604 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-4613         TCGA-22-5472         TCGA-22-5473 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5485         TCGA-22-5489 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-34-5234 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-5819 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2698         TCGA-60-2712         TCGA-60-2715 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-70-6722 
"MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" "MGC26647 WILD-TYPE" 
        TCGA-70-6723 
"MGC26647 WILD-TYPE" 
D125V5, multiclass
                                                             clus
vv                                                            MGC26647 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                5
                                                             clus
vv                                                            MGC26647 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                       1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                167
D125V6, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  T1                1                 35
  T2                5                111
  T3                0                 14
  T4                0                 12
D125V7, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  N0                6                111
  N1                0                 39
  N2                0                 17
  N3                0                  5
D125V8, multiclass
    clus
vv   MGC26647 MUTATED MGC26647 WILD-TYPE
  M0                6                159
  M1                0                  3
  MX                0                  6
D125V9, multiclass
        clus
vv       MGC26647 MUTATED MGC26647 WILD-TYPE
  I                     5                 92
  II                    0                 38
  III+IV                0                 41
D125V10, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  MGC26647 MUTATED      0    6
  MGC26647 WILD-TYPE    4  168
     clus
vv    MGC26647 MUTATED MGC26647 WILD-TYPE
  NO                 0                  4
  YES                6                168
D125V11, continuous
D125V12, continuous
D125V13, multiclass
                                             clus
vv                                            MGC26647 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                1
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     4
  CURRENT SMOKER                                             1
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            MGC26647 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      39
  CURRENT SMOKER                                              27
  LIFELONG NON-SMOKER                                          8
D125V14, continuous

Clustering(126) Variable = TYR MUTATION ANALYSIS
D126V1, survival
               sevent
clus2            0  1
  TYR MUTATED    3  6
  TYR WILD-TYPE 94 64
  TYR MUTATED TYR WILD-TYPE 
            9           158 
  TYR MUTATED TYR WILD-TYPE 
            6            64 
$`TYR MUTATED`
TCGA-18-4083 TCGA-22-4613 TCGA-39-5021 TCGA-51-4079 TCGA-66-2727 TCGA-66-2768 
        6.15        11.77        68.58         0.39        16.96         2.01 
TCGA-66-2773 TCGA-66-2785 TCGA-85-6561 
        3.02         1.94         0.79 

$`TYR WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
        3.39        74.07        44.71        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 
       49.05         0.36 

  TYR MUTATED TYR WILD-TYPE 
         0.39          0.10 
  TYR MUTATED TYR WILD-TYPE 
        68.58        173.79 
  TYR MUTATED TYR WILD-TYPE 
         3.02         19.00 
[1] "0.4 - 68.6 (3.0)"   "0.1 - 173.8 (19.0)"
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"TYR WILD-TYPE"   "TYR MUTATED" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"TYR WILD-TYPE"   "TYR MUTATED" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
  "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE"   "TYR MUTATED" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"TYR WILD-TYPE"   "TYR MUTATED" 
[1] "hr=" "3.2"
D126V2, continuous
D126V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TYR MUTATED      3    6
  TYR WILD-TYPE   44  125
        clus
vv       TYR MUTATED TYR WILD-TYPE
  FEMALE           3            44
  MALE             6           125
D126V4, continuous
[1] "Remove cluster labels:" "TYR MUTATED"           
clus
  TYR MUTATED TYR WILD-TYPE 
            1            35 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3410    TCGA-18-3414    TCGA-18-3419 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-21-5782    TCGA-21-5787    TCGA-22-4591    TCGA-22-4593    TCGA-22-4595 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-5472    TCGA-22-5473 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-5474    TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-22-5485    TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-34-5234 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-37-4133    TCGA-37-4135    TCGA-37-5819    TCGA-60-2698    TCGA-60-2712 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
   TCGA-60-2715    TCGA-60-2725    TCGA-60-2726    TCGA-70-6722    TCGA-70-6723 
"TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" "TYR WILD-TYPE" 
D126V5, multiclass
                                                             clus
vv                                                            TYR MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                 0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           9
                                                             clus
vv                                                            TYR WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           163
D126V6, multiclass
    clus
vv   TYR MUTATED TYR WILD-TYPE
  T1           1            35
  T2           8           108
  T3           0            14
  T4           0            12
D126V7, multiclass
    clus
vv   TYR MUTATED TYR WILD-TYPE
  N0           7           110
  N1           2            37
  N2           0            17
  N3           0             5
D126V8, multiclass
    clus
vv   TYR MUTATED TYR WILD-TYPE
  M0           8           157
  M1           0             3
  MX           0             6
D126V9, multiclass
        clus
vv       TYR MUTATED TYR WILD-TYPE
  I                6            91
  II               3            35
  III+IV           0            41
D126V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  TYR MUTATED      0    9
  TYR WILD-TYPE    4  165
     clus
vv    TYR MUTATED TYR WILD-TYPE
  NO            0             4
  YES           9           165
D126V11, continuous
D126V12, continuous
D126V13, multiclass
                                             clus
vv                                            TYR MUTATED TYR WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           4            90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                3            40
  CURRENT SMOKER                                        1            27
  LIFELONG NON-SMOKER                                   1             7
D126V14, continuous

Clustering(127) Variable = CPXCR1 MUTATION ANALYSIS
D127V1, survival
                  sevent
clus2               0  1
  CPXCR1 MUTATED    4  1
  CPXCR1 WILD-TYPE 93 69
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               5              162 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               1               69 
$`CPXCR1 MUTATED`
TCGA-18-5592 TCGA-37-3783 TCGA-60-2698 TCGA-60-2710 TCGA-60-2722 
        3.02         3.95        10.22        55.40        24.10 

$`CPXCR1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         2.04         1.02        21.70        68.45        49.48 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
            3.02             0.10 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           55.40           173.79 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           10.22            17.98 
[1] "3.0 - 55.4 (10.2)"  "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
[1] "hr=" "1.5"
D127V2, continuous
D127V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      1    5
  CPXCR1 WILD-TYPE   46  126
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              1               46
  MALE                5              126
D127V4, continuous
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-34-5234       TCGA-37-4133       TCGA-37-4135 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6723 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
D127V5, multiclass
                                                             clus
vv                                                            CPXCR1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            CPXCR1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
D127V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              1               35
  T2              2              114
  T3              3               11
  T4              0               12
D127V7, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0              1              116
  N1              4               35
  N2              1               16
  N3              0                5
D127V8, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0              6              159
  M1              0                3
  MX              0                6
D127V9, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  I                   0               97
  II                  4               34
  III+IV              2               39
D127V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      0    6
  CPXCR1 WILD-TYPE    4  168
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  NO               0                4
  YES              6              168
D127V11, continuous
D127V12, continuous
D127V13, multiclass
                                             clus
vv                                            CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1                7
D127V14, continuous
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               1              104 
      TCGA-18-3406       TCGA-18-3417       TCGA-21-1078       TCGA-21-5782 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5786       TCGA-21-5787       TCGA-22-0944       TCGA-22-1002 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1011       TCGA-22-1012       TCGA-22-1016       TCGA-22-4591 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4607       TCGA-22-4613       TCGA-22-5472 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5473       TCGA-22-5474       TCGA-22-5480       TCGA-22-5482 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4533       TCGA-33-4547       TCGA-33-4582 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4583       TCGA-33-4586       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-6143       TCGA-43-6647 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-56-1622       TCGA-56-5898 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2711       TCGA-60-2712       TCGA-60-2713 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2715       TCGA-60-2719       TCGA-60-2720       TCGA-60-2721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2723       TCGA-60-2724       TCGA-60-2725       TCGA-60-2726 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-63-6202       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2756 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2757       TCGA-66-2758       TCGA-66-2759       TCGA-66-2763 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2765       TCGA-66-2766       TCGA-66-2767       TCGA-66-2770 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2771       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2780       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 

Clustering(128) Variable = HAO1 MUTATION ANALYSIS
D128V1, survival
                sevent
clus2             0  1
  HAO1 MUTATED    6  1
  HAO1 WILD-TYPE 91 69
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            160 
  HAO1 MUTATED HAO1 WILD-TYPE 
             1             69 
$`HAO1 MUTATED`
TCGA-21-1070 TCGA-22-4599 TCGA-37-3783 TCGA-43-3920 TCGA-60-2713 TCGA-66-2755 
      115.59        38.17         3.95        18.84        47.87         0.92 
TCGA-66-2785 
        1.94 

$`HAO1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 
        0.79        17.88        18.08        11.57         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       29.19         9.01        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  HAO1 MUTATED HAO1 WILD-TYPE 
          0.92           0.10 
  HAO1 MUTATED HAO1 WILD-TYPE 
        115.59         173.79 
  HAO1 MUTATED HAO1 WILD-TYPE 
         18.84          17.42 
[1] "0.9 - 115.6 (18.8)" "0.1 - 173.8 (17.4)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
[1] "hr=" "3.6"
D128V2, continuous
D128V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAO1 MUTATED      2    5
  HAO1 WILD-TYPE   45  126
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  FEMALE            2             45
  MALE              5            126
D128V4, continuous
[1] "Remove cluster labels:" "HAO1 MUTATED"          
clus
  HAO1 MUTATED HAO1 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4601     TCGA-22-4604 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
D128V5, multiclass
                                                             clus
vv                                                            HAO1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            HAO1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
D128V6, multiclass
    clus
vv   HAO1 MUTATED HAO1 WILD-TYPE
  T1            0             36
  T2            5            111
  T3            2             12
  T4            0             12
D128V7, multiclass
    clus
vv   HAO1 MUTATED HAO1 WILD-TYPE
  N0            6            111
  N1            0             39
  N2            1             16
  N3            0              5
D128V8, multiclass
    clus
vv   HAO1 MUTATED HAO1 WILD-TYPE
  M0            7            158
  M1            0              3
  MX            0              6
D128V9, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  I                 5             92
  II                0             38
  III+IV            2             39
D128V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAO1 MUTATED      0    7
  HAO1 WILD-TYPE    4  167
     clus
vv    HAO1 MUTATED HAO1 WILD-TYPE
  NO             0              4
  YES            7            167
D128V11, continuous
D128V12, continuous
D128V13, multiclass
                                             clus
vv                                            HAO1 MUTATED HAO1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             42
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D128V14, continuous

Clustering(129) Variable = MAGEA6 MUTATION ANALYSIS
D129V1, survival
                  sevent
clus2               0  1
  MAGEA6 MUTATED    5  3
  MAGEA6 WILD-TYPE 92 67
  MAGEA6 MUTATED MAGEA6 WILD-TYPE 
               8              159 
  MAGEA6 MUTATED MAGEA6 WILD-TYPE 
               3               67 
$`MAGEA6 MUTATED`
TCGA-21-5784 TCGA-22-4604 TCGA-22-4613 TCGA-33-4532 TCGA-33-4533 TCGA-34-5232 
       29.85        13.12        11.77        82.98       114.05        51.78 
TCGA-34-5234 TCGA-60-2698 
       32.68        10.22 

$`MAGEA6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       34.75        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       56.32        16.60        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       50.24         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  MAGEA6 MUTATED MAGEA6 WILD-TYPE 
           10.22             0.10 
  MAGEA6 MUTATED MAGEA6 WILD-TYPE 
          114.05           173.79 
  MAGEA6 MUTATED MAGEA6 WILD-TYPE 
          31.265           16.960 
[1] "10.2 - 114.0 (31.3)" "0.1 - 173.8 (17.0)" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED"   "MAGEA6 MUTATED" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED"   "MAGEA6 MUTATED" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED"   "MAGEA6 MUTATED" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEA6 WILD-TYPE"   "MAGEA6 MUTATED" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
[1] "hr=" "1.8"
D129V2, continuous
D129V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEA6 MUTATED      5    3
  MAGEA6 WILD-TYPE   42  128
        clus
vv       MAGEA6 MUTATED MAGEA6 WILD-TYPE
  FEMALE              5               42
  MALE                3              128
D129V4, continuous
D129V5, multiclass
                                                             clus
vv                                                            MAGEA6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            MAGEA6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
D129V6, multiclass
    clus
vv   MAGEA6 MUTATED MAGEA6 WILD-TYPE
  T1              3               33
  T2              5              111
  T3              0               14
  T4              0               12
D129V7, multiclass
    clus
vv   MAGEA6 MUTATED MAGEA6 WILD-TYPE
  N0              5              112
  N1              3               36
  N2              0               17
  N3              0                5
D129V8, multiclass
    clus
vv   MAGEA6 MUTATED MAGEA6 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
D129V9, multiclass
        clus
vv       MAGEA6 MUTATED MAGEA6 WILD-TYPE
  I                   5               92
  II                  3               35
  III+IV              0               41
D129V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEA6 MUTATED      0    8
  MAGEA6 WILD-TYPE    4  166
     clus
vv    MAGEA6 MUTATED MAGEA6 WILD-TYPE
  NO               0                4
  YES              8              166
D129V11, continuous
D129V12, continuous
D129V13, multiclass
                                             clus
vv                                            MAGEA6 MUTATED MAGEA6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0                8
D129V14, continuous
[1] "Remove cluster labels:" "MAGEA6 MUTATED"        
clus
  MAGEA6 MUTATED MAGEA6 WILD-TYPE 
               2              103 
      TCGA-18-3406       TCGA-18-3417       TCGA-21-1078       TCGA-21-5782 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-21-5786       TCGA-21-5787       TCGA-22-0944       TCGA-22-1002 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-1011       TCGA-22-1012       TCGA-22-1016       TCGA-22-4591 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4607       TCGA-22-5472       TCGA-22-5473 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5480       TCGA-22-5482       TCGA-22-5492 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4582       TCGA-33-4583       TCGA-33-4586 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-34-5240       TCGA-34-5241       TCGA-37-4133       TCGA-37-4135 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5021       TCGA-39-5022       TCGA-39-5024 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5027       TCGA-39-5028       TCGA-39-5029       TCGA-39-5030 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5031       TCGA-39-5035       TCGA-39-5036       TCGA-39-5037 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-39-5039       TCGA-43-2578       TCGA-43-3394       TCGA-43-3920 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-43-6143       TCGA-43-6647       TCGA-43-6770       TCGA-43-6771 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-56-1622       TCGA-56-5898       TCGA-56-6545       TCGA-56-6546 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2707       TCGA-60-2708       TCGA-60-2709       TCGA-60-2710 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2711       TCGA-60-2712       TCGA-60-2713       TCGA-60-2715 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2719       TCGA-60-2720       TCGA-60-2721       TCGA-60-2723 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-63-6202 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2727       TCGA-66-2734       TCGA-66-2742       TCGA-66-2744 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2754       TCGA-66-2755       TCGA-66-2756       TCGA-66-2757 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2758       TCGA-66-2759       TCGA-66-2763       TCGA-66-2765 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2766       TCGA-66-2767       TCGA-66-2770       TCGA-66-2771 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2786 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" "MAGEA6 WILD-TYPE" 

Clustering(130) Variable = ASB17 MUTATION ANALYSIS
D130V1, survival
                 sevent
clus2              0  1
  ASB17 MUTATED    5  1
  ASB17 WILD-TYPE 92 69
  ASB17 MUTATED ASB17 WILD-TYPE 
              6             161 
  ASB17 MUTATED ASB17 WILD-TYPE 
              1              69 
$`ASB17 MUTATED`
TCGA-21-5786 TCGA-39-5037 TCGA-60-2712 TCGA-60-2713 TCGA-66-2771 TCGA-85-6560 
       21.57         0.79         9.01        47.87        19.00         0.36 

$`ASB17 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       15.58        35.64        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       49.48        55.40        29.19        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         2.01        23.01         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.79 

  ASB17 MUTATED ASB17 WILD-TYPE 
           0.36            0.10 
  ASB17 MUTATED ASB17 WILD-TYPE 
          47.87          173.79 
  ASB17 MUTATED ASB17 WILD-TYPE 
         14.005          17.880 
[1] "0.4 - 47.9 (14.0)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE"   "ASB17 MUTATED" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "ASB17 MUTATED" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE"   "ASB17 MUTATED" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "ASB17 MUTATED" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE"   "ASB17 MUTATED" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "ASB17 MUTATED" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASB17 WILD-TYPE"   "ASB17 MUTATED" "ASB17 WILD-TYPE" 
[1] "hr=" "1.7"
D130V2, continuous
D130V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASB17 MUTATED      1    5
  ASB17 WILD-TYPE   46  126
        clus
vv       ASB17 MUTATED ASB17 WILD-TYPE
  FEMALE             1              46
  MALE               5             126
D130V4, continuous
[1] "Remove cluster labels:" "ASB17 MUTATED"         
clus
  ASB17 MUTATED ASB17 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-4135 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-37-5819      TCGA-60-2698      TCGA-60-2715      TCGA-60-2725 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"ASB17 WILD-TYPE" "ASB17 WILD-TYPE" "ASB17 WILD-TYPE" 
D130V5, multiclass
                                                             clus
vv                                                            ASB17 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            ASB17 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D130V6, multiclass
    clus
vv   ASB17 MUTATED ASB17 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             0              14
  T4             0              12
D130V7, multiclass
    clus
vv   ASB17 MUTATED ASB17 WILD-TYPE
  N0             2             115
  N1             4              35
  N2             0              17
  N3             0               5
D130V8, multiclass
    clus
vv   ASB17 MUTATED ASB17 WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
D130V9, multiclass
        clus
vv       ASB17 MUTATED ASB17 WILD-TYPE
  I                  2              95
  II                 3              35
  III+IV             1              40
D130V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASB17 MUTATED      0    6
  ASB17 WILD-TYPE    4  168
     clus
vv    ASB17 MUTATED ASB17 WILD-TYPE
  NO              0               4
  YES             6             168
D130V11, continuous
D130V12, continuous
D130V13, multiclass
                                             clus
vv                                            ASB17 MUTATED ASB17 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0               8
D130V14, continuous

Clustering(131) Variable = KIRREL2 MUTATION ANALYSIS
D131V1, survival
                   sevent
clus2                0  1
  KIRREL2 MUTATED    7  4
  KIRREL2 WILD-TYPE 90 66
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               156 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
                4                66 
$`KIRREL2 MUTATED`
TCGA-18-3409 TCGA-18-3421 TCGA-18-5592 TCGA-22-4595 TCGA-33-4566 TCGA-33-4586 
       79.46        43.76         3.02        24.13       173.79        14.07 
TCGA-34-5240 TCGA-43-6647 TCGA-51-4081 TCGA-60-2698 TCGA-60-2723 
        7.73         6.02         2.07        10.22        22.78 

$`KIRREL2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       13.02        59.51        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        2.79        90.51        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04        10.82        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         7.00         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         0.39        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        24.10         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
             2.07              0.10 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
           173.79            141.34 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
            14.07             17.98 
[1] "2.1 - 173.8 (14.1)" "0.1 - 141.3 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
[1] "hr=" "1.8"
D131V2, continuous
D131V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIRREL2 MUTATED      3    8
  KIRREL2 WILD-TYPE   44  123
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  FEMALE               3                44
  MALE                 8               123
D131V4, continuous
[1] "Remove cluster labels:" "KIRREL2 MUTATED"       
clus
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
D131V5, multiclass
                                                             clus
vv                                                            KIRREL2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               9
                                                             clus
vv                                                            KIRREL2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               163
D131V6, multiclass
    clus
vv   KIRREL2 MUTATED KIRREL2 WILD-TYPE
  T1               1                35
  T2               8               108
  T3               2                12
  T4               0                12
D131V7, multiclass
    clus
vv   KIRREL2 MUTATED KIRREL2 WILD-TYPE
  N0               5               112
  N1               4                35
  N2               2                15
  N3               0                 5
D131V8, multiclass
    clus
vv   KIRREL2 MUTATED KIRREL2 WILD-TYPE
  M0               9               156
  M1               0                 3
  MX               1                 5
D131V9, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  I                    3                94
  II                   5                33
  III+IV               2                39
D131V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIRREL2 MUTATED      1   10
  KIRREL2 WILD-TYPE    3  164
     clus
vv    KIRREL2 MUTATED KIRREL2 WILD-TYPE
  NO                1                 3
  YES              10               164
D131V11, continuous
D131V12, continuous
D131V13, multiclass
                                             clus
vv                                            KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       0                 8
D131V14, continuous

Clustering(132) Variable = CLEC3A MUTATION ANALYSIS
D132V1, survival
                  sevent
clus2               0  1
  CLEC3A MUTATED    3  2
  CLEC3A WILD-TYPE 94 68
  CLEC3A MUTATED CLEC3A WILD-TYPE 
               5              162 
  CLEC3A MUTATED CLEC3A WILD-TYPE 
               2               68 
$`CLEC3A MUTATED`
TCGA-22-5478 TCGA-33-4582 TCGA-34-5239 TCGA-39-5037 TCGA-66-2742 
        0.79       103.53        10.82         0.79        21.07 

$`CLEC3A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 
       64.90        63.52        14.60        44.22        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       173.79       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  CLEC3A MUTATED CLEC3A WILD-TYPE 
            0.79             0.10 
  CLEC3A MUTATED CLEC3A WILD-TYPE 
          103.53           173.79 
  CLEC3A MUTATED CLEC3A WILD-TYPE 
           10.82            17.98 
[1] "0.8 - 103.5 (10.8)" "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "CLEC3A MUTATED" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "CLEC3A MUTATED" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLEC3A WILD-TYPE"   "CLEC3A MUTATED" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "CLEC3A MUTATED" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
[1] "hr=" "1.1"
D132V2, continuous
D132V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLEC3A MUTATED      0    5
  CLEC3A WILD-TYPE   47  126
        clus
vv       CLEC3A MUTATED CLEC3A WILD-TYPE
  FEMALE              0               47
  MALE                5              126
D132V4, continuous
[1] "Remove cluster labels:" "CLEC3A MUTATED"        
clus
  CLEC3A MUTATED CLEC3A WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5480       TCGA-22-5482 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
D132V5, multiclass
                                                             clus
vv                                                            CLEC3A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              5
                                                             clus
vv                                                            CLEC3A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              167
D132V6, multiclass
    clus
vv   CLEC3A MUTATED CLEC3A WILD-TYPE
  T1              2               34
  T2              2              114
  T3              0               14
  T4              1               11
D132V7, multiclass
    clus
vv   CLEC3A MUTATED CLEC3A WILD-TYPE
  N0              3              114
  N1              2               37
  N2              0               17
  N3              0                5
D132V8, multiclass
    clus
vv   CLEC3A MUTATED CLEC3A WILD-TYPE
  M0              4              161
  M1              1                2
  MX              0                6
D132V9, multiclass
        clus
vv       CLEC3A MUTATED CLEC3A WILD-TYPE
  I                   2               95
  II                  1               37
  III+IV              2               39
D132V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLEC3A MUTATED      0    5
  CLEC3A WILD-TYPE    4  169
     clus
vv    CLEC3A MUTATED CLEC3A WILD-TYPE
  NO               0                4
  YES              5              169
D132V11, continuous
D132V12, continuous
[1] "Remove cluster labels:" "CLEC3A MUTATED"        
clus
  CLEC3A MUTATED CLEC3A WILD-TYPE 
               2              125 
      TCGA-18-3407       TCGA-18-3408       TCGA-18-3409       TCGA-18-3412 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3414       TCGA-18-3415       TCGA-18-3417       TCGA-18-3419 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4086       TCGA-18-4721       TCGA-21-1070 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5787       TCGA-22-1002       TCGA-22-1012 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4593       TCGA-22-4607       TCGA-22-4613 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-5471       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-22-5480       TCGA-22-5482       TCGA-22-5489       TCGA-22-5492 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-33-4533       TCGA-33-4547       TCGA-33-4583       TCGA-33-4586 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-2596       TCGA-34-2600       TCGA-34-2608       TCGA-34-5234 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-34-5241       TCGA-34-5928       TCGA-34-5929       TCGA-37-4133 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-37-4135       TCGA-37-5819       TCGA-39-5016       TCGA-39-5021 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5039       TCGA-43-2578       TCGA-43-3920 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-43-5668       TCGA-43-6143       TCGA-43-6647       TCGA-43-6771 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-56-1622       TCGA-56-5897       TCGA-56-6545       TCGA-56-6546 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2707       TCGA-60-2708       TCGA-60-2710 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2711       TCGA-60-2712       TCGA-60-2715       TCGA-60-2719 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-63-5128 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-63-5131       TCGA-63-6202       TCGA-66-2727       TCGA-66-2734 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2756 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2757       TCGA-66-2758       TCGA-66-2759       TCGA-66-2763 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2765       TCGA-66-2766       TCGA-66-2767       TCGA-66-2770 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2771       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2780       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2785       TCGA-66-2786       TCGA-66-2787       TCGA-66-2788 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2789       TCGA-66-2791       TCGA-66-2792       TCGA-66-2793 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-66-2794       TCGA-66-2795       TCGA-66-2800       TCGA-85-6560 
"CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" "CLEC3A WILD-TYPE" 
      TCGA-85-6561 
"CLEC3A WILD-TYPE" 
D132V13, multiclass
                                             clus
vv                                            CLEC3A MUTATED CLEC3A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D132V14, continuous

Clustering(133) Variable = SLCO1B1 MUTATION ANALYSIS
D133V1, survival
                   sevent
clus2                0  1
  SLCO1B1 MUTATED   11  2
  SLCO1B1 WILD-TYPE 86 68
  SLCO1B1 MUTATED SLCO1B1 WILD-TYPE 
               13               154 
  SLCO1B1 MUTATED SLCO1B1 WILD-TYPE 
                2                68 
$`SLCO1B1 MUTATED`
TCGA-18-3417 TCGA-21-1070 TCGA-21-5782 TCGA-21-5786 TCGA-33-4566 TCGA-34-5239 
       24.92       115.59        31.63        21.57       173.79        10.82 
TCGA-37-4133 TCGA-39-5016 TCGA-43-3394 TCGA-43-5668 TCGA-56-6546 TCGA-66-2758 
        7.82        74.07        11.57         8.48         1.02        20.98 
TCGA-66-2794 
       54.08 

$`SLCO1B1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5787 
       60.89        34.78        15.55         9.30        29.85        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 
       50.24        51.78        32.68         9.04         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 
       22.95         5.52         4.96         3.95         0.43         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-6143 
       35.64         0.79        17.88        18.08        18.84         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  SLCO1B1 MUTATED SLCO1B1 WILD-TYPE 
             1.02              0.10 
  SLCO1B1 MUTATED SLCO1B1 WILD-TYPE 
           173.79            141.34 
  SLCO1B1 MUTATED SLCO1B1 WILD-TYPE 
            21.57             16.78 
[1] "1.0 - 173.8 (21.6)" "0.1 - 141.3 (16.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
  "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
  "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
  "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE"   "SLCO1B1 MUTATED" "SLCO1B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
[1] "hr=" "8.7"
D133V2, continuous
D133V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B1 MUTATED      2   11
  SLCO1B1 WILD-TYPE   45  120
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  FEMALE               2                45
  MALE                11               120
D133V4, continuous
[1] "Remove cluster labels:" "SLCO1B1 MUTATED"       
clus
  SLCO1B1 MUTATED SLCO1B1 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5787        TCGA-22-4591        TCGA-22-4593 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4135        TCGA-37-5819        TCGA-60-2698 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"SLCO1B1 WILD-TYPE" "SLCO1B1 WILD-TYPE" 
D133V5, multiclass
                                                             clus
vv                                                            SLCO1B1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              12
                                                             clus
vv                                                            SLCO1B1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               160
D133V6, multiclass
    clus
vv   SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  T1               1                35
  T2               8               108
  T3               1                13
  T4               3                 9
D133V7, multiclass
    clus
vv   SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  N0               9               108
  N1               3                36
  N2               1                16
  N3               0                 5
D133V8, multiclass
    clus
vv   SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  M0              11               154
  M1               1                 2
  MX               1                 5
D133V9, multiclass
        clus
vv       SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  I                    5                92
  II                   2                36
  III+IV               5                36
D133V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLCO1B1 MUTATED      0   13
  SLCO1B1 WILD-TYPE    4  161
     clus
vv    SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  NO                0                 4
  YES              13               161
D133V11, continuous
D133V12, continuous
D133V13, multiclass
                                             clus
vv                                            SLCO1B1 MUTATED SLCO1B1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6                88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                40
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                 8
D133V14, continuous

Clustering(134) Variable = OR11L1 MUTATION ANALYSIS
D134V1, survival
                  sevent
clus2               0  1
  OR11L1 MUTATED    7  4
  OR11L1 WILD-TYPE 90 66
  OR11L1 MUTATED OR11L1 WILD-TYPE 
              11              156 
  OR11L1 MUTATED OR11L1 WILD-TYPE 
               4               66 
$`OR11L1 MUTATED`
TCGA-22-4599 TCGA-22-4607 TCGA-33-4566 TCGA-34-5231 TCGA-37-4135 TCGA-39-5031 
       38.17        19.30       173.79        50.24         6.81        27.35 
TCGA-43-3920 TCGA-51-4080 TCGA-60-2713 TCGA-66-2785 TCGA-85-6560 
       18.84         0.39        47.87         1.94         0.36 

$`OR11L1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 
        9.96         0.95         0.59         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 
       49.48        55.40        29.19         9.01        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
       24.95        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       30.02        10.06        54.08         4.01        49.05         0.79 

  OR11L1 MUTATED OR11L1 WILD-TYPE 
            0.36             0.10 
  OR11L1 MUTATED OR11L1 WILD-TYPE 
          173.79           141.34 
  OR11L1 MUTATED OR11L1 WILD-TYPE 
           19.30            16.78 
[1] "0.4 - 173.8 (19.3)" "0.1 - 141.3 (16.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR11L1 MUTATED" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR11L1 WILD-TYPE"   "OR11L1 MUTATED" "OR11L1 WILD-TYPE" 
[1] "hr=" "1.8"
D134V2, continuous
D134V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR11L1 MUTATED      2    9
  OR11L1 WILD-TYPE   45  122
        clus
vv       OR11L1 MUTATED OR11L1 WILD-TYPE
  FEMALE              2               45
  MALE                9              122
D134V4, continuous
[1] "Remove cluster labels:" "OR11L1 MUTATED"        
clus
  OR11L1 MUTATED OR11L1 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-5819       TCGA-60-2698 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR11L1 WILD-TYPE" "OR11L1 WILD-TYPE" 
D134V5, multiclass
                                                             clus
vv                                                            OR11L1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             10
                                                             clus
vv                                                            OR11L1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              162
D134V6, multiclass
    clus
vv   OR11L1 MUTATED OR11L1 WILD-TYPE
  T1              2               34
  T2              8              108
  T3              0               14
  T4              1               11
D134V7, multiclass
    clus
vv   OR11L1 MUTATED OR11L1 WILD-TYPE
  N0              9              108
  N1              2               37
  N2              0               17
  N3              0                5
D134V8, multiclass
    clus
vv   OR11L1 MUTATED OR11L1 WILD-TYPE
  M0             10              155
  M1              0                3
  MX              0                6
D134V9, multiclass
        clus
vv       OR11L1 MUTATED OR11L1 WILD-TYPE
  I                   8               89
  II                  0               38
  III+IV              3               38
D134V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR11L1 MUTATED      0   11
  OR11L1 WILD-TYPE    4  163
     clus
vv    OR11L1 MUTATED OR11L1 WILD-TYPE
  NO               0                4
  YES             11              163
D134V11, continuous
D134V12, continuous
D134V13, multiclass
                                             clus
vv                                            OR11L1 MUTATED OR11L1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      1                7
D134V14, continuous

Clustering(135) Variable = FAM159A MUTATION ANALYSIS
D135V1, survival
                   sevent
clus2                0  1
  FAM159A MUTATED    4  1
  FAM159A WILD-TYPE 93 69
  FAM159A MUTATED FAM159A WILD-TYPE 
                5               162 
  FAM159A MUTATED FAM159A WILD-TYPE 
                1                69 
$`FAM159A MUTATED`
TCGA-18-3417 TCGA-21-5786 TCGA-33-4583 TCGA-46-6026 TCGA-66-2793 
       24.92        21.57       141.34         0.59        10.06 

$`FAM159A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       30.02        54.08         4.01        49.05         0.36         0.79 

  FAM159A MUTATED FAM159A WILD-TYPE 
             0.59              0.10 
  FAM159A MUTATED FAM159A WILD-TYPE 
           141.34            173.79 
  FAM159A MUTATED FAM159A WILD-TYPE 
            21.57             17.42 
[1] "0.6 - 141.3 (21.6)" "0.1 - 173.8 (17.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE"   "FAM159A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE"   "FAM159A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE"   "FAM159A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"FAM159A WILD-TYPE"   "FAM159A MUTATED" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"FAM159A WILD-TYPE" "FAM159A WILD-TYPE" "FAM159A WILD-TYPE" 
[1] "hr=" "2.7"
D135V2, continuous
D135V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM159A MUTATED      0    5
  FAM159A WILD-TYPE   47  126
        clus
vv       FAM159A MUTATED FAM159A WILD-TYPE
  FEMALE               0                47
  MALE                 5               126
D135V4, continuous
D135V5, multiclass
                                                             clus
vv                                                            FAM159A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               5
                                                             clus
vv                                                            FAM159A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               167
D135V6, multiclass
    clus
vv   FAM159A MUTATED FAM159A WILD-TYPE
  T1               1                35
  T2               3               113
  T3               0                14
  T4               1                11
D135V7, multiclass
    clus
vv   FAM159A MUTATED FAM159A WILD-TYPE
  N0               2               115
  N1               3                36
  N2               0                17
  N3               0                 5
D135V8, multiclass
    clus
vv   FAM159A MUTATED FAM159A WILD-TYPE
  M0               4               161
  M1               1                 2
  MX               0                 6
D135V9, multiclass
        clus
vv       FAM159A MUTATED FAM159A WILD-TYPE
  I                    2                95
  II                   1                37
  III+IV               2                39
D135V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  FAM159A MUTATED      1    4
  FAM159A WILD-TYPE    3  170
     clus
vv    FAM159A MUTATED FAM159A WILD-TYPE
  NO                1                 3
  YES               4               170
D135V11, continuous
D135V12, continuous
D135V13, multiclass
                                             clus
vv                                            FAM159A MUTATED FAM159A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D135V14, continuous

Clustering(136) Variable = FTHL17 MUTATION ANALYSIS
D136V1, survival
                  sevent
clus2               0  1
  FTHL17 MUTATED    3  2
  FTHL17 WILD-TYPE 94 68
  FTHL17 MUTATED FTHL17 WILD-TYPE 
               5              162 
  FTHL17 MUTATED FTHL17 WILD-TYPE 
               2               68 
$`FTHL17 MUTATED`
TCGA-18-4083 TCGA-22-5478 TCGA-34-5234 TCGA-51-4081 TCGA-66-2787 
        6.15         0.79        32.68         2.07        40.01 

$`FTHL17 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       63.52        14.60        44.22        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5236 
        2.63        61.61        32.84        50.24        51.78         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         0.39        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  FTHL17 MUTATED FTHL17 WILD-TYPE 
            0.79             0.10 
  FTHL17 MUTATED FTHL17 WILD-TYPE 
           40.01           173.79 
  FTHL17 MUTATED FTHL17 WILD-TYPE 
            6.15            17.98 
[1] "0.8 - 40.0 (6.2)"   "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"FTHL17 WILD-TYPE"   "FTHL17 MUTATED" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE"   "FTHL17 MUTATED" "FTHL17 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE"   "FTHL17 MUTATED" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "FTHL17 MUTATED" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "FTHL17 MUTATED" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"FTHL17 WILD-TYPE"   "FTHL17 MUTATED" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE"   "FTHL17 MUTATED" "FTHL17 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE"   "FTHL17 MUTATED" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "FTHL17 MUTATED" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "FTHL17 MUTATED" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"FTHL17 WILD-TYPE"   "FTHL17 MUTATED" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE"   "FTHL17 MUTATED" "FTHL17 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE"   "FTHL17 MUTATED" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "FTHL17 MUTATED" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "FTHL17 MUTATED" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
[1] "hr=" "1.5"
D136V2, continuous
D136V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTHL17 MUTATED      1    4
  FTHL17 WILD-TYPE   46  127
        clus
vv       FTHL17 MUTATED FTHL17 WILD-TYPE
  FEMALE              1               46
  MALE                4              127
D136V4, continuous
[1] "Remove cluster labels:" "FTHL17 MUTATED"        
clus
  FTHL17 MUTATED FTHL17 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5480       TCGA-22-5482 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
D136V5, multiclass
                                                             clus
vv                                                            FTHL17 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              5
                                                             clus
vv                                                            FTHL17 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              167
D136V6, multiclass
    clus
vv   FTHL17 MUTATED FTHL17 WILD-TYPE
  T1              2               34
  T2              3              113
  T3              0               14
  T4              0               12
D136V7, multiclass
    clus
vv   FTHL17 MUTATED FTHL17 WILD-TYPE
  N0              3              114
  N1              2               37
  N2              0               17
  N3              0                5
D136V8, multiclass
    clus
vv   FTHL17 MUTATED FTHL17 WILD-TYPE
  M0              5              160
  M1              0                3
  MX              0                6
D136V9, multiclass
        clus
vv       FTHL17 MUTATED FTHL17 WILD-TYPE
  I                   3               94
  II                  2               36
  III+IV              0               41
D136V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FTHL17 MUTATED      0    5
  FTHL17 WILD-TYPE    4  169
     clus
vv    FTHL17 MUTATED FTHL17 WILD-TYPE
  NO               0                4
  YES              5              169
D136V11, continuous
D136V12, continuous
D136V13, multiclass
                                             clus
vv                                            FTHL17 MUTATED FTHL17 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D136V14, continuous
[1] "Remove cluster labels:" "FTHL17 MUTATED"        
clus
  FTHL17 MUTATED FTHL17 WILD-TYPE 
               1              104 
      TCGA-18-3406       TCGA-18-3417       TCGA-21-1078       TCGA-21-5782 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-21-5786       TCGA-21-5787       TCGA-22-0944       TCGA-22-1002 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-1011       TCGA-22-1012       TCGA-22-1016       TCGA-22-4591 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4607       TCGA-22-4613       TCGA-22-5472 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-5473       TCGA-22-5474       TCGA-22-5480       TCGA-22-5482 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4533       TCGA-33-4547       TCGA-33-4582 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-33-4583       TCGA-33-4586       TCGA-34-5240       TCGA-34-5241 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-39-5021 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-6143       TCGA-43-6647 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-56-1622       TCGA-56-5898 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2707       TCGA-60-2708 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2723       TCGA-60-2724       TCGA-60-2725 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-60-2726       TCGA-63-6202       TCGA-66-2727       TCGA-66-2734 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2770       TCGA-66-2771       TCGA-66-2773       TCGA-66-2777 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2778       TCGA-66-2780       TCGA-66-2781       TCGA-66-2782 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2783       TCGA-66-2786       TCGA-66-2788       TCGA-66-2789 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" "FTHL17 WILD-TYPE" 

Clustering(137) Variable = MAGEA4 MUTATION ANALYSIS
D137V1, survival
                  sevent
clus2               0  1
  MAGEA4 MUTATED    5  2
  MAGEA4 WILD-TYPE 92 68
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               7              160 
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               2               68 
$`MAGEA4 MUTATED`
TCGA-21-1070 TCGA-22-5492 TCGA-33-4532 TCGA-33-4566 TCGA-43-5668 TCGA-60-2720 
      115.59        16.60        82.98       173.79         8.48         3.16 
TCGA-66-2754 
        2.01 

$`MAGEA4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       30.08        62.86        56.32       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57        18.84         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        35.34        30.61        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
            2.01             0.10 
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
          173.79           141.34 
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
           16.60            17.98 
[1] "2.0 - 173.8 (16.6)" "0.1 - 141.3 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "MAGEA4 MUTATED"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "MAGEA4 MUTATED"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "MAGEA4 MUTATED"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE"   "MAGEA4 MUTATED" "MAGEA4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
[1] "hr=" "5.6"
D137V2, continuous
D137V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEA4 MUTATED      3    4
  MAGEA4 WILD-TYPE   44  127
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  FEMALE              3               44
  MALE                4              127
D137V4, continuous
[1] "Remove cluster labels:" "MAGEA4 MUTATED"        
clus
  MAGEA4 MUTATED MAGEA4 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" "MAGEA4 WILD-TYPE" 
D137V5, multiclass
                                                             clus
vv                                                            MAGEA4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              7
                                                             clus
vv                                                            MAGEA4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              165
D137V6, multiclass
    clus
vv   MAGEA4 MUTATED MAGEA4 WILD-TYPE
  T1              1               35
  T2              5              111
  T3              1               13
  T4              0               12
D137V7, multiclass
    clus
vv   MAGEA4 MUTATED MAGEA4 WILD-TYPE
  N0              4              113
  N1              1               38
  N2              2               15
  N3              0                5
D137V8, multiclass
    clus
vv   MAGEA4 MUTATED MAGEA4 WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
D137V9, multiclass
        clus
vv       MAGEA4 MUTATED MAGEA4 WILD-TYPE
  I                   3               94
  II                  1               37
  III+IV              3               38
D137V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEA4 MUTATED      0    7
  MAGEA4 WILD-TYPE    4  167
     clus
vv    MAGEA4 MUTATED MAGEA4 WILD-TYPE
  NO               0                4
  YES              7              167
D137V11, continuous
D137V12, continuous
D137V13, multiclass
                                             clus
vv                                            MAGEA4 MUTATED MAGEA4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D137V14, continuous

Clustering(138) Variable = TRIM48 MUTATION ANALYSIS
D138V1, survival
                  sevent
clus2               0  1
  TRIM48 MUTATED    4  1
  TRIM48 WILD-TYPE 93 69
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               5              162 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               1               69 
$`TRIM48 MUTATED`
TCGA-22-4595 TCGA-34-5232 TCGA-37-3789 TCGA-43-3920 TCGA-43-6143 
       24.13        51.78         0.43        18.84         7.00 

$`TRIM48 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 
        1.74        14.10        27.02        20.45        35.08        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 
       19.76         2.63        61.61        32.84        50.24        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6647 
        0.79        17.88        18.08        11.57         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  TRIM48 MUTATED TRIM48 WILD-TYPE 
            0.43             0.10 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
           51.78           173.79 
  TRIM48 MUTATED TRIM48 WILD-TYPE 
           18.84            17.42 
[1] "0.4 - 51.8 (18.8)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "TRIM48 MUTATED" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM48 WILD-TYPE"   "TRIM48 MUTATED" "TRIM48 WILD-TYPE"   "TRIM48 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
[1] "hr=" "1.7"
D138V2, continuous
D138V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      1    4
  TRIM48 WILD-TYPE   46  127
        clus
vv       TRIM48 MUTATED TRIM48 WILD-TYPE
  FEMALE              1               46
  MALE                4              127
D138V4, continuous
[1] "Remove cluster labels:" "TRIM48 MUTATED"        
clus
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
D138V5, multiclass
                                                             clus
vv                                                            TRIM48 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              4
                                                             clus
vv                                                            TRIM48 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              168
D138V6, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  T1              1               35
  T2              3              113
  T3              1               13
  T4              0               12
D138V7, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  N0              3              114
  N1              1               38
  N2              1               16
  N3              0                5
D138V8, multiclass
    clus
vv   TRIM48 MUTATED TRIM48 WILD-TYPE
  M0              3              162
  M1              0                3
  MX              0                6
D138V9, multiclass
        clus
vv       TRIM48 MUTATED TRIM48 WILD-TYPE
  I                   3               94
  II                  1               37
  III+IV              1               40
D138V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM48 MUTATED      1    4
  TRIM48 WILD-TYPE    3  170
     clus
vv    TRIM48 MUTATED TRIM48 WILD-TYPE
  NO               1                3
  YES              4              170
D138V11, continuous
D138V12, continuous
[1] "Remove cluster labels:" "TRIM48 MUTATED"        
clus
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               2              125 
      TCGA-18-3407       TCGA-18-3408       TCGA-18-3409       TCGA-18-3412 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3414       TCGA-18-3415       TCGA-18-3417       TCGA-18-3419 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4086       TCGA-18-4721       TCGA-21-1070 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5787       TCGA-22-1002       TCGA-22-1012 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4593       TCGA-22-4607       TCGA-22-4613 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5471       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5489 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4533       TCGA-33-4547       TCGA-33-4583 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-33-4586       TCGA-34-2596       TCGA-34-2600       TCGA-34-2608 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-34-5234       TCGA-34-5241       TCGA-34-5928       TCGA-34-5929 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-39-5016 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5021       TCGA-39-5022       TCGA-39-5024       TCGA-39-5027 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5028       TCGA-39-5029       TCGA-39-5030       TCGA-39-5031 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5035       TCGA-39-5036       TCGA-39-5039       TCGA-43-2578 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-43-5668       TCGA-43-6647       TCGA-43-6771       TCGA-46-6025 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-46-6026       TCGA-51-4079       TCGA-51-4080       TCGA-56-1622 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-56-5897       TCGA-56-6545       TCGA-56-6546       TCGA-60-2698 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2707       TCGA-60-2708       TCGA-60-2710       TCGA-60-2711 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-63-5128       TCGA-63-5131 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-63-6202       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2756 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2757       TCGA-66-2758       TCGA-66-2759       TCGA-66-2763 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2765       TCGA-66-2766       TCGA-66-2767       TCGA-66-2770 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2771       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2780       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2785       TCGA-66-2786       TCGA-66-2787       TCGA-66-2788 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2789       TCGA-66-2791       TCGA-66-2792       TCGA-66-2793 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2794       TCGA-66-2795       TCGA-66-2800       TCGA-85-6560 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-85-6561 
"TRIM48 WILD-TYPE" 
D138V13, multiclass
                                             clus
vv                                            TRIM48 MUTATED TRIM48 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1                7
D138V14, continuous
[1] "Remove cluster labels:" "TRIM48 MUTATED"        
clus
  TRIM48 MUTATED TRIM48 WILD-TYPE 
               2              103 
      TCGA-18-3406       TCGA-18-3417       TCGA-21-1078       TCGA-21-5782 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-21-5786       TCGA-21-5787       TCGA-22-0944       TCGA-22-1002 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-1011       TCGA-22-1012       TCGA-22-1016       TCGA-22-4591 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4607       TCGA-22-4613       TCGA-22-5472 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5473       TCGA-22-5474       TCGA-22-5480       TCGA-22-5482 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4533       TCGA-33-4547       TCGA-33-4582 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-33-4583       TCGA-33-4586       TCGA-34-5240       TCGA-34-5241 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-39-5021 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-6647       TCGA-43-6770       TCGA-43-6771 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-56-1622       TCGA-56-5898       TCGA-56-6545       TCGA-56-6546 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2707       TCGA-60-2708       TCGA-60-2709       TCGA-60-2710 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2711       TCGA-60-2712       TCGA-60-2713       TCGA-60-2715 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2719       TCGA-60-2720       TCGA-60-2721       TCGA-60-2723 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-63-6202 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2727       TCGA-66-2734       TCGA-66-2742       TCGA-66-2744 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2754       TCGA-66-2755       TCGA-66-2756       TCGA-66-2757 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2758       TCGA-66-2759       TCGA-66-2763       TCGA-66-2765 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2766       TCGA-66-2767       TCGA-66-2770       TCGA-66-2771 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2786 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" "TRIM48 WILD-TYPE" 

Clustering(139) Variable = ZNF254 MUTATION ANALYSIS
D139V1, survival
                  sevent
clus2               0  1
  ZNF254 MUTATED    7  2
  ZNF254 WILD-TYPE 90 68
  ZNF254 MUTATED ZNF254 WILD-TYPE 
               9              158 
  ZNF254 MUTATED ZNF254 WILD-TYPE 
               2               68 
$`ZNF254 MUTATED`
TCGA-22-5478 TCGA-34-5927 TCGA-34-5928 TCGA-37-4133 TCGA-43-3920 TCGA-46-6025 
        0.79        22.95         5.52         7.82        18.84         0.95 
TCGA-60-2698 TCGA-66-2734 TCGA-66-2758 
       10.22        43.10        20.98 

$`ZNF254 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 
       64.90        63.52        14.60        44.22        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5929 
       32.68         9.04        10.82         7.73        14.07         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        3.95         0.43         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.79         5.42         9.96         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        2.07        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 TCGA-66-2744 
        1.22        23.64        11.77        16.96        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99         0.99        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  ZNF254 MUTATED ZNF254 WILD-TYPE 
            0.79             0.10 
  ZNF254 MUTATED ZNF254 WILD-TYPE 
           43.10           173.79 
  ZNF254 MUTATED ZNF254 WILD-TYPE 
           10.22            17.98 
[1] "0.8 - 43.1 (10.2)"  "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "ZNF254 MUTATED"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
  "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE"   "ZNF254 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "ZNF254 MUTATED"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
  "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE"   "ZNF254 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "ZNF254 MUTATED"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
  "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE"   "ZNF254 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE"   "ZNF254 MUTATED" "ZNF254 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" "ZNF254 WILD-TYPE" 
[1] "hr=" "1.2"
D139V2, continuous
D139V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF254 MUTATED      3    6
  ZNF254 WILD-TYPE   44  125
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  FEMALE              3               44
  MALE                6              125
D139V4, continuous
D139V5, multiclass
                                                             clus
vv                                                            ZNF254 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            ZNF254 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
D139V6, multiclass
    clus
vv   ZNF254 MUTATED ZNF254 WILD-TYPE
  T1              1               35
  T2              7              109
  T3              0               14
  T4              1               11
D139V7, multiclass
    clus
vv   ZNF254 MUTATED ZNF254 WILD-TYPE
  N0              6              111
  N1              3               36
  N2              0               17
  N3              0                5
D139V8, multiclass
    clus
vv   ZNF254 MUTATED ZNF254 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              0                6
D139V9, multiclass
        clus
vv       ZNF254 MUTATED ZNF254 WILD-TYPE
  I                   5               92
  II                  3               35
  III+IV              1               40
D139V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF254 MUTATED      0    9
  ZNF254 WILD-TYPE    4  165
     clus
vv    ZNF254 MUTATED ZNF254 WILD-TYPE
  NO               0                4
  YES              9              165
D139V11, continuous
D139V12, continuous
D139V13, multiclass
                                             clus
vv                                            ZNF254 MUTATED ZNF254 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D139V14, continuous

Clustering(140) Variable = DARC MUTATION ANALYSIS
D140V1, survival
                sevent
clus2             0  1
  DARC MUTATED    4  3
  DARC WILD-TYPE 93 67
  DARC MUTATED DARC WILD-TYPE 
             7            160 
  DARC MUTATED DARC WILD-TYPE 
             3             67 
$`DARC MUTATED`
TCGA-22-4601 TCGA-22-5491 TCGA-33-4566 TCGA-39-5016 TCGA-39-5019 TCGA-60-2709 
       34.75        56.32       173.79        74.07        44.71        49.48 
TCGA-66-2742 
       21.07 

$`DARC WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       10.22        21.70        68.45        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  DARC MUTATED DARC WILD-TYPE 
         21.07           0.10 
  DARC MUTATED DARC WILD-TYPE 
        173.79         141.34 
  DARC MUTATED DARC WILD-TYPE 
        49.480         15.565 
[1] "21.1 - 173.8 (49.5)" "0.1 - 141.3 (15.6)" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"DARC WILD-TYPE"   "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE"   "DARC MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"DARC WILD-TYPE"   "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"DARC WILD-TYPE"   "DARC MUTATED"   "DARC MUTATED" "DARC WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"DARC WILD-TYPE"   "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE"   "DARC MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"DARC WILD-TYPE"   "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"DARC WILD-TYPE"   "DARC MUTATED"   "DARC MUTATED" "DARC WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"DARC WILD-TYPE"   "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE"   "DARC MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"DARC WILD-TYPE"   "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"DARC WILD-TYPE"   "DARC MUTATED"   "DARC MUTATED" "DARC WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "DARC MUTATED" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
[1] "hr=" "3.2"
D140V2, continuous
D140V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DARC MUTATED      1    6
  DARC WILD-TYPE   46  125
        clus
vv       DARC MUTATED DARC WILD-TYPE
  FEMALE            1             46
  MALE              6            125
D140V4, continuous
[1] "Remove cluster labels:" "DARC MUTATED"          
clus
  DARC MUTATED DARC WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4604 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5492     TCGA-34-5234 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"DARC WILD-TYPE" "DARC WILD-TYPE" 
D140V5, multiclass
                                                             clus
vv                                                            DARC MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            6
                                                             clus
vv                                                            DARC WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            166
D140V6, multiclass
    clus
vv   DARC MUTATED DARC WILD-TYPE
  T1            1             35
  T2            5            111
  T3            0             14
  T4            1             11
D140V7, multiclass
    clus
vv   DARC MUTATED DARC WILD-TYPE
  N0            5            112
  N1            2             37
  N2            0             17
  N3            0              5
D140V8, multiclass
    clus
vv   DARC MUTATED DARC WILD-TYPE
  M0            5            160
  M1            1              2
  MX            1              5
D140V9, multiclass
        clus
vv       DARC MUTATED DARC WILD-TYPE
  I                 4             93
  II                1             37
  III+IV            2             39
D140V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  DARC MUTATED      0    7
  DARC WILD-TYPE    4  167
     clus
vv    DARC MUTATED DARC WILD-TYPE
  NO             0              4
  YES            7            167
D140V11, continuous
D140V12, continuous
[1] "Remove cluster labels:" "DARC MUTATED"          
clus
  DARC MUTATED DARC WILD-TYPE 
             2            125 
    TCGA-18-3407     TCGA-18-3408     TCGA-18-3409     TCGA-18-3412 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3414     TCGA-18-3415     TCGA-18-3417     TCGA-18-3419 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4086     TCGA-18-4721     TCGA-21-1070 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5787     TCGA-22-1002     TCGA-22-1012 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4593     TCGA-22-4607     TCGA-22-4613 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5471     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5489 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4533     TCGA-33-4547     TCGA-33-4583 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-33-4586     TCGA-34-2596     TCGA-34-2600     TCGA-34-2608 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-34-5234     TCGA-34-5241     TCGA-34-5928     TCGA-34-5929 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-39-5021 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5039     TCGA-43-2578     TCGA-43-3920 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-43-5668     TCGA-43-6143     TCGA-43-6647     TCGA-43-6771 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-56-1622     TCGA-56-5897     TCGA-56-6545     TCGA-56-6546 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2707     TCGA-60-2708     TCGA-60-2710 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2711     TCGA-60-2712     TCGA-60-2715     TCGA-60-2719 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-63-5128 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-63-5131     TCGA-63-6202     TCGA-66-2727     TCGA-66-2734 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2744     TCGA-66-2754     TCGA-66-2755     TCGA-66-2756 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2757     TCGA-66-2758     TCGA-66-2759     TCGA-66-2763 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2765     TCGA-66-2766     TCGA-66-2767     TCGA-66-2770 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2771     TCGA-66-2773     TCGA-66-2777     TCGA-66-2778 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2780     TCGA-66-2781     TCGA-66-2782     TCGA-66-2783 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2785     TCGA-66-2786     TCGA-66-2787     TCGA-66-2788 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2789     TCGA-66-2791     TCGA-66-2792     TCGA-66-2793 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2794     TCGA-66-2795     TCGA-66-2800     TCGA-85-6560 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-85-6561 
"DARC WILD-TYPE" 
D140V13, multiclass
                                             clus
vv                                            DARC MUTATED DARC WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            1             93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0              8
D140V14, continuous
[1] "Remove cluster labels:" "DARC MUTATED"          
clus
  DARC MUTATED DARC WILD-TYPE 
             2            103 
    TCGA-18-3406     TCGA-18-3417     TCGA-21-1078     TCGA-21-5782 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-21-5786     TCGA-21-5787     TCGA-22-0944     TCGA-22-1002 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-1011     TCGA-22-1012     TCGA-22-1016     TCGA-22-4591 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4607     TCGA-22-4613     TCGA-22-5472 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5473     TCGA-22-5474     TCGA-22-5480     TCGA-22-5482 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4533     TCGA-33-4547     TCGA-33-4582 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-33-4583     TCGA-33-4586     TCGA-34-5240     TCGA-34-5241 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-39-5021 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-6143     TCGA-43-6647 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-43-6770     TCGA-43-6771     TCGA-56-1622     TCGA-56-5898 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2707     TCGA-60-2708 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2710     TCGA-60-2711     TCGA-60-2712     TCGA-60-2713 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2715     TCGA-60-2719     TCGA-60-2720     TCGA-60-2721 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-60-2723     TCGA-60-2724     TCGA-60-2725     TCGA-60-2726 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-63-6202     TCGA-66-2727     TCGA-66-2734     TCGA-66-2744 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2754     TCGA-66-2755     TCGA-66-2756     TCGA-66-2757 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2758     TCGA-66-2759     TCGA-66-2763     TCGA-66-2765 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2766     TCGA-66-2767     TCGA-66-2770     TCGA-66-2771 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2786 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"DARC WILD-TYPE" "DARC WILD-TYPE" "DARC WILD-TYPE" 

Clustering(141) Variable = SLC18A3 MUTATION ANALYSIS
D141V1, survival
                   sevent
clus2                0  1
  SLC18A3 MUTATED    5  2
  SLC18A3 WILD-TYPE 92 68
  SLC18A3 MUTATED SLC18A3 WILD-TYPE 
                7               160 
  SLC18A3 MUTATED SLC18A3 WILD-TYPE 
                2                68 
$`SLC18A3 MUTATED`
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-39-5031 TCGA-66-2742 TCGA-66-2767 
      114.05        97.94        43.10        27.35        21.07         2.01 
TCGA-66-2789 
        4.04 

$`SLC18A3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.71        24.33         1.94        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  SLC18A3 MUTATED SLC18A3 WILD-TYPE 
             2.01              0.10 
  SLC18A3 MUTATED SLC18A3 WILD-TYPE 
           114.05            173.79 
  SLC18A3 MUTATED SLC18A3 WILD-TYPE 
            27.35             16.78 
[1] "2.0 - 114.0 (27.4)" "0.1 - 173.8 (16.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED"   "SLC18A3 MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED"   "SLC18A3 MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED"   "SLC18A3 MUTATED" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
  "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE"   "SLC18A3 MUTATED" "SLC18A3 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" "SLC18A3 WILD-TYPE" 
[1] "hr=" "2.4"
D141V2, continuous
D141V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC18A3 MUTATED      2    6
  SLC18A3 WILD-TYPE   45  125
        clus
vv       SLC18A3 MUTATED SLC18A3 WILD-TYPE
  FEMALE               2                45
  MALE                 6               125
D141V4, continuous
D141V5, multiclass
                                                             clus
vv                                                            SLC18A3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               8
                                                             clus
vv                                                            SLC18A3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               164
D141V6, multiclass
    clus
vv   SLC18A3 MUTATED SLC18A3 WILD-TYPE
  T1               3                33
  T2               5               111
  T3               0                14
  T4               0                12
D141V7, multiclass
    clus
vv   SLC18A3 MUTATED SLC18A3 WILD-TYPE
  N0               4               113
  N1               1                38
  N2               1                16
  N3               2                 3
D141V8, multiclass
    clus
vv   SLC18A3 MUTATED SLC18A3 WILD-TYPE
  M0               7               158
  M1               1                 2
  MX               0                 6
D141V9, multiclass
        clus
vv       SLC18A3 MUTATED SLC18A3 WILD-TYPE
  I                    4                93
  II                   0                38
  III+IV               4                37
D141V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC18A3 MUTATED      0    8
  SLC18A3 WILD-TYPE    4  166
     clus
vv    SLC18A3 MUTATED SLC18A3 WILD-TYPE
  NO                0                 4
  YES               8               166
D141V11, continuous
D141V12, continuous
D141V13, multiclass
                                             clus
vv                                            SLC18A3 MUTATED SLC18A3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                40
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D141V14, continuous

Clustering(142) Variable = SLC44A5 MUTATION ANALYSIS
D142V1, survival
                   sevent
clus2                0  1
  SLC44A5 MUTATED    4  5
  SLC44A5 WILD-TYPE 93 65
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
                9               158 
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
                5                65 
$`SLC44A5 MUTATED`
TCGA-21-1070 TCGA-22-4613 TCGA-33-4566 TCGA-37-4141 TCGA-39-5022 TCGA-51-4080 
      115.59        11.77       173.79         0.39        55.17         0.39 
TCGA-60-2720 TCGA-66-2766 TCGA-66-2793 
        3.16         1.02        10.06 

$`SLC44A5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        3.95         0.43         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34        30.61        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         0.99         2.01         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        4.04         5.03        30.02        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
             0.39              0.10 
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
           173.79            141.34 
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
            10.06             18.46 
[1] "0.4 - 173.8 (10.1)" "0.1 - 141.3 (18.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
  "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC44A5 WILD-TYPE"   "SLC44A5 MUTATED" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
[1] "hr=" "1.1"
D142V2, continuous
D142V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC44A5 MUTATED      4    6
  SLC44A5 WILD-TYPE   43  125
        clus
vv       SLC44A5 MUTATED SLC44A5 WILD-TYPE
  FEMALE               4                43
  MALE                 6               125
D142V4, continuous
[1] "Remove cluster labels:" "SLC44A5 MUTATED"       
clus
  SLC44A5 MUTATED SLC44A5 WILD-TYPE 
                1                35 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-4604        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" "SLC44A5 WILD-TYPE" 
D142V5, multiclass
                                                             clus
vv                                                            SLC44A5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               9
                                                             clus
vv                                                            SLC44A5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               163
D142V6, multiclass
    clus
vv   SLC44A5 MUTATED SLC44A5 WILD-TYPE
  T1               3                33
  T2               4               112
  T3               1                13
  T4               2                10
D142V7, multiclass
    clus
vv   SLC44A5 MUTATED SLC44A5 WILD-TYPE
  N0               7               110
  N1               2                37
  N2               1                16
  N3               0                 5
D142V8, multiclass
    clus
vv   SLC44A5 MUTATED SLC44A5 WILD-TYPE
  M0               9               156
  M1               0                 3
  MX               0                 6
D142V9, multiclass
        clus
vv       SLC44A5 MUTATED SLC44A5 WILD-TYPE
  I                    6                91
  II                   0                38
  III+IV               4                37
D142V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC44A5 MUTATED      0   10
  SLC44A5 WILD-TYPE    4  164
     clus
vv    SLC44A5 MUTATED SLC44A5 WILD-TYPE
  NO                0                 4
  YES              10               164
D142V11, continuous
D142V12, continuous
D142V13, multiclass
                                             clus
vv                                            SLC44A5 MUTATED SLC44A5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               6                88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       1                 7
D142V14, continuous

Clustering(143) Variable = OR5T1 MUTATION ANALYSIS
D143V1, survival
                 sevent
clus2              0  1
  OR5T1 MUTATED    7  1
  OR5T1 WILD-TYPE 90 69
  OR5T1 MUTATED OR5T1 WILD-TYPE 
              8             159 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
              1              69 
$`OR5T1 MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-21-5786 TCGA-33-4566 TCGA-66-2744 TCGA-66-2758 
       79.46        46.52        21.57       173.79         0.99        20.98 
TCGA-66-2768 TCGA-66-2787 
        2.01        40.01 

$`OR5T1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07         4.80        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
        3.98        12.00        24.95         1.94        25.97        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR5T1 MUTATED OR5T1 WILD-TYPE 
           0.99            0.10 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
         173.79          141.34 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
          30.79           16.60 
[1] "1.0 - 173.8 (30.8)" "0.1 - 141.3 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D143V2, continuous
D143V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T1 MUTATED      1    9
  OR5T1 WILD-TYPE   46  122
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  FEMALE             1              46
  MALE               9             122
D143V4, continuous
D143V5, multiclass
                                                             clus
vv                                                            OR5T1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            OR5T1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
D143V6, multiclass
    clus
vv   OR5T1 MUTATED OR5T1 WILD-TYPE
  T1             3              33
  T2             7             109
  T3             0              14
  T4             0              12
D143V7, multiclass
    clus
vv   OR5T1 MUTATED OR5T1 WILD-TYPE
  N0             7             110
  N1             2              37
  N2             1              16
  N3             0               5
D143V8, multiclass
    clus
vv   OR5T1 MUTATED OR5T1 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
D143V9, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  I                  6              91
  II                 2              36
  III+IV             1              40
D143V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T1 MUTATED      0   10
  OR5T1 WILD-TYPE    4  164
     clus
vv    OR5T1 MUTATED OR5T1 WILD-TYPE
  NO              0               4
  YES            10             164
D143V11, continuous
D143V12, continuous
D143V13, multiclass
                                             clus
vv                                            OR5T1 MUTATED OR5T1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D143V14, continuous

Clustering(144) Variable = CLRN2 MUTATION ANALYSIS
D144V1, survival
                 sevent
clus2              0  1
  CLRN2 MUTATED    1  5
  CLRN2 WILD-TYPE 96 65
  CLRN2 MUTATED CLRN2 WILD-TYPE 
              6             161 
  CLRN2 MUTATED CLRN2 WILD-TYPE 
              5              65 
$`CLRN2 MUTATED`
TCGA-33-4538 TCGA-33-4566 TCGA-33-6737 TCGA-37-3789 TCGA-66-2773 TCGA-66-2791 
       97.94       173.79        19.76         0.43         3.02         5.03 

$`CLRN2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 
      114.05        43.10       103.53       141.34        14.07         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        3.95         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        1.02         2.01         2.01        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01        22.98         4.04        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  CLRN2 MUTATED CLRN2 WILD-TYPE 
           0.43            0.10 
  CLRN2 MUTATED CLRN2 WILD-TYPE 
         173.79          141.34 
  CLRN2 MUTATED CLRN2 WILD-TYPE 
         12.395          17.880 
[1] "0.4 - 173.8 (12.4)" "0.1 - 141.3 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE"   "CLRN2 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLRN2 WILD-TYPE"   "CLRN2 MUTATED" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLRN2 WILD-TYPE"   "CLRN2 MUTATED" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "CLRN2 MUTATED" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE"   "CLRN2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE"   "CLRN2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE"   "CLRN2 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLRN2 WILD-TYPE"   "CLRN2 MUTATED" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLRN2 WILD-TYPE"   "CLRN2 MUTATED" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "CLRN2 MUTATED" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE"   "CLRN2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE"   "CLRN2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE"   "CLRN2 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLRN2 WILD-TYPE"   "CLRN2 MUTATED" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLRN2 WILD-TYPE"   "CLRN2 MUTATED" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "CLRN2 MUTATED" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE"   "CLRN2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE"   "CLRN2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
[1] "hr=" "1.2"
D144V2, continuous
D144V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLRN2 MUTATED      0    6
  CLRN2 WILD-TYPE   47  125
        clus
vv       CLRN2 MUTATED CLRN2 WILD-TYPE
  FEMALE             0              47
  MALE               6             125
D144V4, continuous
D144V5, multiclass
                                                             clus
vv                                                            CLRN2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            CLRN2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D144V6, multiclass
    clus
vv   CLRN2 MUTATED CLRN2 WILD-TYPE
  T1             0              36
  T2             6             110
  T3             0              14
  T4             0              12
D144V7, multiclass
    clus
vv   CLRN2 MUTATED CLRN2 WILD-TYPE
  N0             3             114
  N1             0              39
  N2             2              15
  N3             1               4
D144V8, multiclass
    clus
vv   CLRN2 MUTATED CLRN2 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
D144V9, multiclass
        clus
vv       CLRN2 MUTATED CLRN2 WILD-TYPE
  I                  3              94
  II                 0              38
  III+IV             3              38
D144V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLRN2 MUTATED      0    6
  CLRN2 WILD-TYPE    4  168
     clus
vv    CLRN2 MUTATED CLRN2 WILD-TYPE
  NO              0               4
  YES             6             168
D144V11, continuous
D144V12, continuous
[1] "Remove cluster labels:" "CLRN2 MUTATED"         
clus
  CLRN2 MUTATED CLRN2 WILD-TYPE 
              2             125 
     TCGA-18-3407      TCGA-18-3408      TCGA-18-3409      TCGA-18-3412 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3414      TCGA-18-3415      TCGA-18-3417      TCGA-18-3419 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4086      TCGA-18-4721      TCGA-21-1070 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-1002      TCGA-22-1012 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4593      TCGA-22-4607      TCGA-22-4613 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5471      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5489 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4583 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-33-4586      TCGA-34-2596      TCGA-34-2600      TCGA-34-2608 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-34-5234      TCGA-34-5241      TCGA-34-5928      TCGA-34-5929 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-39-5016 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5021      TCGA-39-5022      TCGA-39-5024      TCGA-39-5027 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5039      TCGA-43-2578 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-43-3920      TCGA-43-5668      TCGA-43-6143      TCGA-43-6647 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-43-6771      TCGA-46-6025      TCGA-46-6026      TCGA-51-4079 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-51-4080      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2715 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2719      TCGA-60-2720      TCGA-60-2721      TCGA-60-2722 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2723      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-63-5128      TCGA-63-5131      TCGA-63-6202      TCGA-66-2727 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2734      TCGA-66-2742      TCGA-66-2744      TCGA-66-2754 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2755      TCGA-66-2756      TCGA-66-2757      TCGA-66-2758 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2759      TCGA-66-2763      TCGA-66-2765      TCGA-66-2766 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2767      TCGA-66-2770      TCGA-66-2771      TCGA-66-2777 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2780      TCGA-66-2781      TCGA-66-2782 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2783      TCGA-66-2785      TCGA-66-2786      TCGA-66-2787 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2789      TCGA-66-2792      TCGA-66-2793 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800      TCGA-85-6560 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-85-6561 
"CLRN2 WILD-TYPE" 
D144V13, multiclass
                                             clus
vv                                            CLRN2 MUTATED CLRN2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1               7
D144V14, continuous
[1] "Remove cluster labels:" "CLRN2 MUTATED"         
clus
  CLRN2 MUTATED CLRN2 WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5782 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-21-5786      TCGA-21-5787      TCGA-22-0944      TCGA-22-1002 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-1012      TCGA-22-1016      TCGA-22-4591 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-4613      TCGA-22-5472 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5480      TCGA-22-5482 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4582 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-34-5240      TCGA-34-5241 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-39-5021 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-6143      TCGA-43-6647 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-56-1622      TCGA-56-5898 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2707      TCGA-60-2708 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2723      TCGA-60-2724      TCGA-60-2725 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-60-2726      TCGA-63-6202      TCGA-66-2727      TCGA-66-2734 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2771      TCGA-66-2777      TCGA-66-2778 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" "CLRN2 WILD-TYPE" 

Clustering(145) Variable = ABCD2 MUTATION ANALYSIS
D145V1, survival
                 sevent
clus2              0  1
  ABCD2 MUTATED    8  3
  ABCD2 WILD-TYPE 89 67
  ABCD2 MUTATED ABCD2 WILD-TYPE 
             11             156 
  ABCD2 MUTATED ABCD2 WILD-TYPE 
              3              67 
$`ABCD2 MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3415 TCGA-18-4083 TCGA-22-1011 TCGA-39-5031 
       79.46        46.52        59.51         6.15         1.74        27.35 
TCGA-56-5897 TCGA-60-2698 TCGA-60-2723 TCGA-66-2766 TCGA-66-2787 
        0.10        10.22        22.78         1.02        40.01 

$`ABCD2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07         4.80        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 
       28.34        24.92         1.61        43.76         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16       115.59        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
       15.55         9.30        31.63        29.85        21.57        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        7.33         4.31        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
        2.07        28.93         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        24.10         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  ABCD2 MUTATED ABCD2 WILD-TYPE 
           0.10            0.36 
  ABCD2 MUTATED ABCD2 WILD-TYPE 
          79.46          173.79 
  ABCD2 MUTATED ABCD2 WILD-TYPE 
          22.78           17.42 
[1] "0.1 - 79.5 (22.8)"  "0.4 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
  "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
  "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
  "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE"   "ABCD2 MUTATED" "ABCD2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "ABCD2 MUTATED" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
[1] "hr=" "1.6"
D145V2, continuous
D145V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ABCD2 MUTATED      3    8
  ABCD2 WILD-TYPE   44  123
        clus
vv       ABCD2 MUTATED ABCD2 WILD-TYPE
  FEMALE             3              44
  MALE               8             123
D145V4, continuous
[1] "Remove cluster labels:" "ABCD2 MUTATED"         
clus
  ABCD2 MUTATED ABCD2 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-4135 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-37-5819      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" "ABCD2 WILD-TYPE" 
D145V5, multiclass
                                                             clus
vv                                                            ABCD2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            ABCD2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
D145V6, multiclass
    clus
vv   ABCD2 MUTATED ABCD2 WILD-TYPE
  T1             4              32
  T2             7             109
  T3             0              14
  T4             0              12
D145V7, multiclass
    clus
vv   ABCD2 MUTATED ABCD2 WILD-TYPE
  N0             7             110
  N1             2              37
  N2             2              15
  N3             0               5
D145V8, multiclass
    clus
vv   ABCD2 MUTATED ABCD2 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             1               5
D145V9, multiclass
        clus
vv       ABCD2 MUTATED ABCD2 WILD-TYPE
  I                  6              91
  II                 2              36
  III+IV             2              39
D145V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ABCD2 MUTATED      0   11
  ABCD2 WILD-TYPE    4  163
     clus
vv    ABCD2 MUTATED ABCD2 WILD-TYPE
  NO              0               4
  YES            11             163
D145V11, continuous
D145V12, continuous
D145V13, multiclass
                                             clus
vv                                            ABCD2 MUTATED ABCD2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0               8
D145V14, continuous

Clustering(146) Variable = ZNF835 MUTATION ANALYSIS
D146V1, survival
                  sevent
clus2               0  1
  ZNF835 MUTATED    7  1
  ZNF835 WILD-TYPE 90 69
  ZNF835 MUTATED ZNF835 WILD-TYPE 
               8              159 
  ZNF835 MUTATED ZNF835 WILD-TYPE 
               1               69 
$`ZNF835 MUTATED`
TCGA-18-3409 TCGA-18-5592 TCGA-33-4566 TCGA-34-5927 TCGA-43-2578 TCGA-60-2722 
       79.46         3.02       173.79        22.95        18.08        24.10 
TCGA-66-2783 TCGA-66-2787 
       24.95        40.01 

$`ZNF835 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       10.82         7.73        14.07         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        12.00         1.94        25.97        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  ZNF835 MUTATED ZNF835 WILD-TYPE 
            3.02             0.10 
  ZNF835 MUTATED ZNF835 WILD-TYPE 
          173.79           141.34 
  ZNF835 MUTATED ZNF835 WILD-TYPE 
          24.525           15.580 
[1] "3.0 - 173.8 (24.5)" "0.1 - 141.3 (15.6)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE"   "ZNF835 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF835 WILD-TYPE"   "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE"   "ZNF835 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF835 WILD-TYPE"   "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF835 WILD-TYPE"   "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE"   "ZNF835 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF835 WILD-TYPE"   "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE"   "ZNF835 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF835 WILD-TYPE"   "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF835 WILD-TYPE"   "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE"   "ZNF835 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF835 WILD-TYPE"   "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE"   "ZNF835 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF835 WILD-TYPE"   "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF835 WILD-TYPE"   "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "ZNF835 MUTATED" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D146V2, continuous
D146V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF835 MUTATED      2    7
  ZNF835 WILD-TYPE   45  124
        clus
vv       ZNF835 MUTATED ZNF835 WILD-TYPE
  FEMALE              2               45
  MALE                7              124
D146V4, continuous
[1] "Remove cluster labels:" "ZNF835 MUTATED"        
clus
  ZNF835 MUTATED ZNF835 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-22-5492       TCGA-34-5234       TCGA-37-4133       TCGA-37-4135 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-37-5819       TCGA-60-2698       TCGA-60-2712       TCGA-60-2715 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-70-6723 
"ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" "ZNF835 WILD-TYPE" 
D146V5, multiclass
                                                             clus
vv                                                            ZNF835 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            ZNF835 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
D146V6, multiclass
    clus
vv   ZNF835 MUTATED ZNF835 WILD-TYPE
  T1              4               32
  T2              3              113
  T3              2               12
  T4              0               12
D146V7, multiclass
    clus
vv   ZNF835 MUTATED ZNF835 WILD-TYPE
  N0              6              111
  N1              2               37
  N2              0               17
  N3              1                4
D146V8, multiclass
    clus
vv   ZNF835 MUTATED ZNF835 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              0                6
D146V9, multiclass
        clus
vv       ZNF835 MUTATED ZNF835 WILD-TYPE
  I                   4               93
  II                  2               36
  III+IV              2               39
D146V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF835 MUTATED      0    9
  ZNF835 WILD-TYPE    4  165
     clus
vv    ZNF835 MUTATED ZNF835 WILD-TYPE
  NO               0                4
  YES              9              165
D146V11, continuous
D146V12, continuous
D146V13, multiclass
                                             clus
vv                                            ZNF835 MUTATED ZNF835 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1                7
D146V14, continuous

Clustering(147) Variable = GP2 MUTATION ANALYSIS
D147V1, survival
               sevent
clus2            0  1
  GP2 MUTATED    5  4
  GP2 WILD-TYPE 92 66
  GP2 MUTATED GP2 WILD-TYPE 
            9           158 
  GP2 MUTATED GP2 WILD-TYPE 
            4            66 
$`GP2 MUTATED`
TCGA-22-4613 TCGA-34-5239 TCGA-43-5668 TCGA-43-6143 TCGA-51-4079 TCGA-60-2698 
       11.77        10.82         8.48         7.00         0.39        10.22 
TCGA-66-2742 TCGA-66-2789 TCGA-66-2800 
       21.07         4.04        49.05 

$`GP2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  GP2 MUTATED GP2 WILD-TYPE 
         0.39          0.10 
  GP2 MUTATED GP2 WILD-TYPE 
        49.05        173.79 
  GP2 MUTATED GP2 WILD-TYPE 
        10.22         18.92 
[1] "0.4 - 49.0 (10.2)"  "0.1 - 173.8 (18.9)"
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED"   "GP2 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-85-6560    TCGA-85-6561 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED"   "GP2 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-85-6560    TCGA-85-6561 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED"   "GP2 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-85-6560    TCGA-85-6561 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" 
[1] "hr=" "2"  
D147V2, continuous
D147V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  GP2 MUTATED      2    9
  GP2 WILD-TYPE   45  122
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  FEMALE           2            45
  MALE             9           122
D147V4, continuous
[1] "Remove cluster labels:" "GP2 MUTATED"           
clus
  GP2 MUTATED GP2 WILD-TYPE 
            2            34 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3410    TCGA-18-3414    TCGA-18-3419 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5782    TCGA-21-5787    TCGA-22-4591    TCGA-22-4593    TCGA-22-4595 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-5472    TCGA-22-5473 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5474    TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5485    TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-34-5234 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-4133    TCGA-37-4135    TCGA-37-5819    TCGA-60-2712    TCGA-60-2715 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2725    TCGA-60-2726    TCGA-70-6722    TCGA-70-6723 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
D147V5, multiclass
                                                             clus
vv                                                            GP2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                 1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          10
                                                             clus
vv                                                            GP2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           162
D147V6, multiclass
    clus
vv   GP2 MUTATED GP2 WILD-TYPE
  T1           4            32
  T2           4           112
  T3           0            14
  T4           3             9
D147V7, multiclass
    clus
vv   GP2 MUTATED GP2 WILD-TYPE
  N0           7           110
  N1           3            36
  N2           0            17
  N3           1             4
D147V8, multiclass
    clus
vv   GP2 MUTATED GP2 WILD-TYPE
  M0           9           156
  M1           1             2
  MX           0             6
D147V9, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  I                4            93
  II               3            35
  III+IV           4            37
D147V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  GP2 MUTATED      0   11
  GP2 WILD-TYPE    4  163
     clus
vv    GP2 MUTATED GP2 WILD-TYPE
  NO            0             4
  YES          11           163
D147V11, continuous
D147V12, continuous
D147V13, multiclass
                                             clus
vv                                            GP2 MUTATED GP2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           6            88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                4            39
  CURRENT SMOKER                                        0            28
  LIFELONG NON-SMOKER                                   0             8
D147V14, continuous

Clustering(148) Variable = LDB2 MUTATION ANALYSIS
D148V1, survival
                sevent
clus2             0  1
  LDB2 MUTATED    3  3
  LDB2 WILD-TYPE 94 67
  LDB2 MUTATED LDB2 WILD-TYPE 
             6            161 
  LDB2 MUTATED LDB2 WILD-TYPE 
             3             67 
$`LDB2 MUTATED`
TCGA-18-4083 TCGA-39-5022 TCGA-43-2578 TCGA-56-1622 TCGA-66-2756 TCGA-66-2787 
        6.15        55.17        18.08        28.93         0.99        40.01 

$`LDB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 
        0.39         3.39        74.07        44.71        68.58        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       35.64         0.79        17.88        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         0.39         2.07         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  LDB2 MUTATED LDB2 WILD-TYPE 
          0.99           0.10 
  LDB2 MUTATED LDB2 WILD-TYPE 
         55.17         173.79 
  LDB2 MUTATED LDB2 WILD-TYPE 
        23.505         16.960 
[1] "1.0 - 55.2 (23.5)"  "0.1 - 173.8 (17.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"LDB2 WILD-TYPE"   "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE"   "LDB2 MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"LDB2 WILD-TYPE"   "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"LDB2 WILD-TYPE"   "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE"   "LDB2 MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"LDB2 WILD-TYPE"   "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"LDB2 WILD-TYPE"   "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE"   "LDB2 MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"LDB2 WILD-TYPE"   "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "LDB2 MUTATED" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"LDB2 WILD-TYPE" "LDB2 WILD-TYPE" "LDB2 WILD-TYPE" 
[1] "hr=" "1.2"
D148V2, continuous
D148V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LDB2 MUTATED      2    5
  LDB2 WILD-TYPE   45  126
        clus
vv       LDB2 MUTATED LDB2 WILD-TYPE
  FEMALE            2             45
  MALE              5            126
D148V4, continuous
D148V5, multiclass
                                                             clus
vv                                                            LDB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            LDB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
D148V6, multiclass
    clus
vv   LDB2 MUTATED LDB2 WILD-TYPE
  T1            3             33
  T2            3            113
  T3            0             14
  T4            1             11
D148V7, multiclass
    clus
vv   LDB2 MUTATED LDB2 WILD-TYPE
  N0            6            111
  N1            1             38
  N2            0             17
  N3            0              5
D148V8, multiclass
    clus
vv   LDB2 MUTATED LDB2 WILD-TYPE
  M0            7            158
  M1            0              3
  MX            0              6
D148V9, multiclass
        clus
vv       LDB2 MUTATED LDB2 WILD-TYPE
  I                 5             92
  II                1             37
  III+IV            1             40
D148V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  LDB2 MUTATED      0    7
  LDB2 WILD-TYPE    4  167
     clus
vv    LDB2 MUTATED LDB2 WILD-TYPE
  NO             0              4
  YES            7            167
D148V11, continuous
D148V12, continuous
D148V13, multiclass
                                             clus
vv                                            LDB2 MUTATED LDB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 0             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D148V14, continuous

Clustering(149) Variable = PRB2 MUTATION ANALYSIS
D149V1, survival
                sevent
clus2             0  1
  PRB2 MUTATED    5  2
  PRB2 WILD-TYPE 92 68
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            160 
  PRB2 MUTATED PRB2 WILD-TYPE 
             2             68 
$`PRB2 MUTATED`
TCGA-18-3414 TCGA-18-4721 TCGA-37-4141 TCGA-39-5022 TCGA-60-2711 TCGA-66-2787 
       13.02        90.51         0.39        55.17        29.19        40.01 
TCGA-66-2788 
       22.98 

$`PRB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       25.97         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  PRB2 MUTATED PRB2 WILD-TYPE 
          0.39           0.10 
  PRB2 MUTATED PRB2 WILD-TYPE 
         90.51         173.79 
  PRB2 MUTATED PRB2 WILD-TYPE 
         29.19          16.78 
[1] "0.4 - 90.5 (29.2)"  "0.1 - 173.8 (16.8)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
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"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
[1] "hr=" "2"  
D149V2, continuous
D149V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      2    5
  PRB2 WILD-TYPE   45  126
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  FEMALE            2             45
  MALE              5            126
D149V4, continuous
[1] "Remove cluster labels:" "PRB2 MUTATED"          
clus
  PRB2 MUTATED PRB2 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5787     TCGA-22-4591     TCGA-22-4593 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4595     TCGA-22-4599     TCGA-22-4601     TCGA-22-4604 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
D149V5, multiclass
                                                             clus
vv                                                            PRB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            PRB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
D149V6, multiclass
    clus
vv   PRB2 MUTATED PRB2 WILD-TYPE
  T1            3             33
  T2            3            113
  T3            0             14
  T4            1             11
D149V7, multiclass
    clus
vv   PRB2 MUTATED PRB2 WILD-TYPE
  N0            6            111
  N1            1             38
  N2            0             17
  N3            0              5
D149V8, multiclass
    clus
vv   PRB2 MUTATED PRB2 WILD-TYPE
  M0            6            159
  M1            1              2
  MX            0              6
D149V9, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  I                 6             91
  II                0             38
  III+IV            1             40
D149V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      0    7
  PRB2 WILD-TYPE    4  167
     clus
vv    PRB2 MUTATED PRB2 WILD-TYPE
  NO             0              4
  YES            7            167
D149V11, continuous
D149V12, continuous
D149V13, multiclass
                                             clus
vv                                            PRB2 MUTATED PRB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 0             43
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    1              7
D149V14, continuous

Clustering(150) Variable = SORCS1 MUTATION ANALYSIS
D150V1, survival
                  sevent
clus2               0  1
  SORCS1 MUTATED    9  8
  SORCS1 WILD-TYPE 88 62
  SORCS1 MUTATED SORCS1 WILD-TYPE 
              17              150 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
               8               62 
$`SORCS1 MUTATED`
TCGA-18-3409 TCGA-21-5784 TCGA-21-5786 TCGA-22-5477 TCGA-22-5489 TCGA-33-4566 
       79.46        29.85        21.57        44.22        62.86       173.79 
TCGA-33-6737 TCGA-34-5239 TCGA-34-5929 TCGA-60-2698 TCGA-60-2723 TCGA-66-2754 
       19.76        10.82         4.96        10.22        22.78         2.01 
TCGA-66-2755 TCGA-66-2759 TCGA-66-2785 TCGA-66-2789 TCGA-66-2791 
        0.92        25.02         1.94         4.04         5.03 

$`SORCS1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 
        0.79        71.34        11.74        30.08        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       14.07         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04         7.73        14.07        22.95         5.52 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        24.10         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       43.10        21.07         0.99         0.99         0.99        20.98 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2792 
       12.00        24.95        25.97        40.01        22.98        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  SORCS1 MUTATED SORCS1 WILD-TYPE 
            0.92             0.10 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
          173.79           141.34 
  SORCS1 MUTATED SORCS1 WILD-TYPE 
           19.76            17.42 
[1] "0.9 - 173.8 (19.8)" "0.1 - 141.3 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED" "SORCS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE"   "SORCS1 MUTATED"   "SORCS1 MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" "SORCS1 WILD-TYPE" 
[1] "hr=" "1.1"
D150V2, continuous
D150V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      3   16
  SORCS1 WILD-TYPE   44  115
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  FEMALE              3               44
  MALE               16              115
D150V4, continuous
D150V5, multiclass
                                                             clus
vv                                                            SORCS1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             18
                                                             clus
vv                                                            SORCS1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              154
D150V6, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  T1              6               30
  T2             12              104
  T3              0               14
  T4              1               11
D150V7, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  N0             13              104
  N1              1               38
  N2              3               14
  N3              2                3
D150V8, multiclass
    clus
vv   SORCS1 MUTATED SORCS1 WILD-TYPE
  M0             19              146
  M1              0                3
  MX              0                6
D150V9, multiclass
        clus
vv       SORCS1 MUTATED SORCS1 WILD-TYPE
  I                  11               86
  II                  1               37
  III+IV              6               35
D150V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SORCS1 MUTATED      0   19
  SORCS1 WILD-TYPE    4  155
     clus
vv    SORCS1 MUTATED SORCS1 WILD-TYPE
  NO               0                4
  YES             19              155
D150V11, continuous
D150V12, continuous
D150V13, multiclass
                                             clus
vv                                            SORCS1 MUTATED SORCS1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               38
  CURRENT SMOKER                                           5               23
  LIFELONG NON-SMOKER                                      0                8
D150V14, continuous

Clustering(151) Variable = OR10Q1 MUTATION ANALYSIS
D151V1, survival
                  sevent
clus2               0  1
  OR10Q1 MUTATED    0  6
  OR10Q1 WILD-TYPE 97 64
  OR10Q1 MUTATED OR10Q1 WILD-TYPE 
               6              161 
  OR10Q1 MUTATED OR10Q1 WILD-TYPE 
               6               64 
$`OR10Q1 MUTATED`
TCGA-21-5787 TCGA-22-4595 TCGA-22-4599 TCGA-34-2608 TCGA-39-5039 TCGA-66-2780 
       10.82        24.13        38.17        32.84        17.88        12.03 

$`OR10Q1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4601 TCGA-22-4604 
       14.10        27.02        20.45        35.08        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  OR10Q1 MUTATED OR10Q1 WILD-TYPE 
           10.82             0.10 
  OR10Q1 MUTATED OR10Q1 WILD-TYPE 
           38.17           173.79 
  OR10Q1 MUTATED OR10Q1 WILD-TYPE 
          21.005           16.960 
[1] "10.8 - 38.2 (21.0)" "0.1 - 173.8 (17.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE"   "OR10Q1 MUTATED" "OR10Q1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" "OR10Q1 WILD-TYPE" 
[1] "hr=" "2.6"
D151V2, continuous
D151V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10Q1 MUTATED      1    6
  OR10Q1 WILD-TYPE   46  125
        clus
vv       OR10Q1 MUTATED OR10Q1 WILD-TYPE
  FEMALE              1               46
  MALE                6              125
D151V4, continuous
D151V5, multiclass
                                                             clus
vv                                                            OR10Q1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            OR10Q1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
D151V6, multiclass
    clus
vv   OR10Q1 MUTATED OR10Q1 WILD-TYPE
  T1              0               36
  T2              5              111
  T3              2               12
  T4              0               12
D151V7, multiclass
    clus
vv   OR10Q1 MUTATED OR10Q1 WILD-TYPE
  N0              5              112
  N1              0               39
  N2              2               15
  N3              0                5
D151V8, multiclass
    clus
vv   OR10Q1 MUTATED OR10Q1 WILD-TYPE
  M0              6              159
  M1              0                3
  MX              0                6
D151V9, multiclass
        clus
vv       OR10Q1 MUTATED OR10Q1 WILD-TYPE
  I                   3               94
  II                  2               36
  III+IV              2               39
D151V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10Q1 MUTATED      2    5
  OR10Q1 WILD-TYPE    2  169
     clus
vv    OR10Q1 MUTATED OR10Q1 WILD-TYPE
  NO               2                2
  YES              5              169
D151V11, continuous
D151V12, continuous
D151V13, multiclass
                                             clus
vv                                            OR10Q1 MUTATED OR10Q1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      1                7
D151V14, continuous

Clustering(152) Variable = CBLN4 MUTATION ANALYSIS
D152V1, survival
                 sevent
clus2              0  1
  CBLN4 MUTATED    2  3
  CBLN4 WILD-TYPE 95 67
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             162 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              3              67 
$`CBLN4 MUTATED`
TCGA-18-3411 TCGA-21-5782 TCGA-39-5027 TCGA-39-5028 TCGA-60-2715 
       46.52        31.63        60.76         1.71        35.34 

$`CBLN4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       29.19         9.01        47.87        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  CBLN4 MUTATED CBLN4 WILD-TYPE 
           1.71            0.10 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
          60.76          173.79 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
          35.34           16.78 
[1] "1.7 - 60.8 (35.3)"  "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE"   "CBLN4 MUTATED"   "CBLN4 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE"   "CBLN4 MUTATED"   "CBLN4 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE"   "CBLN4 MUTATED"   "CBLN4 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
[1] "hr=" "1.1"
D152V2, continuous
D152V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBLN4 MUTATED      2    3
  CBLN4 WILD-TYPE   45  128
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  FEMALE             2              45
  MALE               3             128
D152V4, continuous
[1] "Remove cluster labels:" "CBLN4 MUTATED"         
clus
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2725      TCGA-60-2726 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
D152V5, multiclass
                                                             clus
vv                                                            CBLN4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             5
                                                             clus
vv                                                            CBLN4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             167
D152V6, multiclass
    clus
vv   CBLN4 MUTATED CBLN4 WILD-TYPE
  T1             1              35
  T2             3             113
  T3             0              14
  T4             1              11
D152V7, multiclass
    clus
vv   CBLN4 MUTATED CBLN4 WILD-TYPE
  N0             3             114
  N1             1              38
  N2             1              16
  N3             0               5
D152V8, multiclass
    clus
vv   CBLN4 MUTATED CBLN4 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
D152V9, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  I                  3              94
  II                 0              38
  III+IV             2              39
D152V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBLN4 MUTATED      0    5
  CBLN4 WILD-TYPE    4  169
     clus
vv    CBLN4 MUTATED CBLN4 WILD-TYPE
  NO              0               4
  YES             5             169
D152V11, continuous
D152V12, continuous
D152V13, multiclass
                                             clus
vv                                            CBLN4 MUTATED CBLN4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D152V14, continuous

Clustering(153) Variable = H1FNT MUTATION ANALYSIS
D153V1, survival
                 sevent
clus2              0  1
  H1FNT MUTATED    3  1
  H1FNT WILD-TYPE 94 69
  H1FNT MUTATED H1FNT WILD-TYPE 
              4             163 
  H1FNT MUTATED H1FNT WILD-TYPE 
              1              69 
$`H1FNT MUTATED`
TCGA-18-3409 TCGA-22-5491 TCGA-34-5928 TCGA-66-2778 
       79.46        56.32         5.52        19.00 

$`H1FNT WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
        9.04        10.82         7.73        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02         2.01        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  H1FNT MUTATED H1FNT WILD-TYPE 
           5.52            0.10 
  H1FNT MUTATED H1FNT WILD-TYPE 
          79.46          173.79 
  H1FNT MUTATED H1FNT WILD-TYPE 
          37.66           16.96 
[1] "5.5 - 79.5 (37.7)"  "0.1 - 173.8 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE"   "H1FNT MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE"   "H1FNT MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"H1FNT WILD-TYPE"   "H1FNT MUTATED" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"H1FNT WILD-TYPE"   "H1FNT MUTATED" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE"   "H1FNT MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE"   "H1FNT MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"H1FNT WILD-TYPE"   "H1FNT MUTATED" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"H1FNT WILD-TYPE"   "H1FNT MUTATED" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE"   "H1FNT MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE"   "H1FNT MUTATED" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"H1FNT WILD-TYPE"   "H1FNT MUTATED" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"H1FNT WILD-TYPE"   "H1FNT MUTATED" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
[1] "hr=" "2.6"
D153V2, continuous
D153V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  H1FNT MUTATED      2    2
  H1FNT WILD-TYPE   45  129
        clus
vv       H1FNT MUTATED H1FNT WILD-TYPE
  FEMALE             2              45
  MALE               2             129
D153V4, continuous
[1] "Remove cluster labels:" "H1FNT MUTATED"         
clus
  H1FNT MUTATED H1FNT WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5492 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
D153V5, multiclass
                                                             clus
vv                                                            H1FNT MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             3
                                                             clus
vv                                                            H1FNT WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             169
D153V6, multiclass
    clus
vv   H1FNT MUTATED H1FNT WILD-TYPE
  T1             2              34
  T2             2             114
  T3             0              14
  T4             0              12
D153V7, multiclass
    clus
vv   H1FNT MUTATED H1FNT WILD-TYPE
  N0             2             115
  N1             1              38
  N2             0              17
  N3             1               4
D153V8, multiclass
    clus
vv   H1FNT MUTATED H1FNT WILD-TYPE
  M0             4             161
  M1             0               3
  MX             0               6
D153V9, multiclass
        clus
vv       H1FNT MUTATED H1FNT WILD-TYPE
  I                  1              96
  II                 1              37
  III+IV             1              40
D153V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  H1FNT MUTATED      0    4
  H1FNT WILD-TYPE    4  170
     clus
vv    H1FNT MUTATED H1FNT WILD-TYPE
  NO              0               4
  YES             4             170
D153V11, continuous
D153V12, continuous
D153V13, multiclass
                                             clus
vv                                            H1FNT MUTATED H1FNT WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D153V14, continuous
[1] "Remove cluster labels:" "H1FNT MUTATED"         
clus
  H1FNT MUTATED H1FNT WILD-TYPE 
              1             104 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5782 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-21-5786      TCGA-21-5787      TCGA-22-0944      TCGA-22-1002 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-1011      TCGA-22-1012      TCGA-22-1016      TCGA-22-4591 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-4613      TCGA-22-5472 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5480      TCGA-22-5482 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4582 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-34-5240      TCGA-34-5241 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-39-5021 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-6143      TCGA-43-6647 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-56-1622      TCGA-56-5898 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2707      TCGA-60-2708 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2723      TCGA-60-2724      TCGA-60-2725 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-60-2726      TCGA-63-6202      TCGA-66-2727      TCGA-66-2734 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2771      TCGA-66-2773      TCGA-66-2777 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" "H1FNT WILD-TYPE" 

Clustering(154) Variable = OR2J3 MUTATION ANALYSIS
D154V1, survival
                 sevent
clus2              0  1
  OR2J3 MUTATED    3  1
  OR2J3 WILD-TYPE 94 69
  OR2J3 MUTATED OR2J3 WILD-TYPE 
              4             163 
  OR2J3 MUTATED OR2J3 WILD-TYPE 
              1              69 
$`OR2J3 MUTATED`
TCGA-22-4601 TCGA-37-4133 TCGA-46-6026 TCGA-66-2744 
       34.75         7.82         0.59         0.99 

$`OR2J3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         0.43         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.95         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 
       11.77        16.96        43.10        21.07         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  OR2J3 MUTATED OR2J3 WILD-TYPE 
           0.59            0.10 
  OR2J3 MUTATED OR2J3 WILD-TYPE 
          34.75          173.79 
  OR2J3 MUTATED OR2J3 WILD-TYPE 
          4.405          18.080 
[1] "0.6 - 34.8 (4.4)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2J3 WILD-TYPE"   "OR2J3 MUTATED" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
[1] "hr=" "1.3"
D154V2, continuous
D154V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2J3 MUTATED      1    5
  OR2J3 WILD-TYPE   46  126
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  FEMALE             1              46
  MALE               5             126
D154V4, continuous
[1] "Remove cluster labels:" "OR2J3 MUTATED"         
clus
  OR2J3 MUTATED OR2J3 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4604 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR2J3 WILD-TYPE" "OR2J3 WILD-TYPE" 
D154V5, multiclass
                                                             clus
vv                                                            OR2J3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            OR2J3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D154V6, multiclass
    clus
vv   OR2J3 MUTATED OR2J3 WILD-TYPE
  T1             1              35
  T2             3             113
  T3             0              14
  T4             2              10
D154V7, multiclass
    clus
vv   OR2J3 MUTATED OR2J3 WILD-TYPE
  N0             4             113
  N1             2              37
  N2             0              17
  N3             0               5
D154V8, multiclass
    clus
vv   OR2J3 MUTATED OR2J3 WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
D154V9, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  I                  1              96
  II                 3              35
  III+IV             2              39
D154V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2J3 MUTATED      1    5
  OR2J3 WILD-TYPE    3  169
     clus
vv    OR2J3 MUTATED OR2J3 WILD-TYPE
  NO              1               3
  YES             5             169
D154V11, continuous
D154V12, continuous
D154V13, multiclass
                                             clus
vv                                            OR2J3 MUTATED OR2J3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D154V14, continuous

Clustering(155) Variable = TRPV5 MUTATION ANALYSIS
D155V1, survival
                 sevent
clus2              0  1
  TRPV5 MUTATED    9  2
  TRPV5 WILD-TYPE 88 68
  TRPV5 MUTATED TRPV5 WILD-TYPE 
             11             156 
  TRPV5 MUTATED TRPV5 WILD-TYPE 
              2              68 
$`TRPV5 MUTATED`
TCGA-18-3411 TCGA-18-3412 TCGA-33-4532 TCGA-43-5668 TCGA-60-2710 TCGA-60-2723 
       46.52        11.34        82.98         8.48        55.40        22.78 
TCGA-66-2756 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2793 
        0.99         1.94        25.97        40.01        10.06 

$`TRPV5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 
       12.16         4.47        81.07        79.46         4.80        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 
        0.79        17.88        18.08        11.57        18.84         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 
        1.02        10.22        21.70        68.45        49.48        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       24.10         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        3.98        12.00        24.95        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       30.02        54.08         4.01        49.05         0.36         0.79 

  TRPV5 MUTATED TRPV5 WILD-TYPE 
           0.99            0.10 
  TRPV5 MUTATED TRPV5 WILD-TYPE 
          82.98          173.79 
  TRPV5 MUTATED TRPV5 WILD-TYPE 
          22.78           17.42 
[1] "1.0 - 83.0 (22.8)"  "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE"   "TRPV5 MUTATED"   "TRPV5 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE"   "TRPV5 MUTATED"   "TRPV5 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE"   "TRPV5 MUTATED"   "TRPV5 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRPV5 WILD-TYPE"   "TRPV5 MUTATED" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" "TRPV5 WILD-TYPE" 
[1] "hr=" "2.5"
D155V2, continuous
D155V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPV5 MUTATED      4    7
  TRPV5 WILD-TYPE   43  124
        clus
vv       TRPV5 MUTATED TRPV5 WILD-TYPE
  FEMALE             4              43
  MALE               7             124
D155V4, continuous
D155V5, multiclass
                                                             clus
vv                                                            TRPV5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            TRPV5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
D155V6, multiclass
    clus
vv   TRPV5 MUTATED TRPV5 WILD-TYPE
  T1             4              32
  T2             5             111
  T3             0              14
  T4             2              10
D155V7, multiclass
    clus
vv   TRPV5 MUTATED TRPV5 WILD-TYPE
  N0             7             110
  N1             3              36
  N2             1              16
  N3             0               5
D155V8, multiclass
    clus
vv   TRPV5 MUTATED TRPV5 WILD-TYPE
  M0            11             154
  M1             0               3
  MX             0               6
D155V9, multiclass
        clus
vv       TRPV5 MUTATED TRPV5 WILD-TYPE
  I                  6              91
  II                 2              36
  III+IV             3              38
D155V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRPV5 MUTATED      0   11
  TRPV5 WILD-TYPE    4  163
     clus
vv    TRPV5 MUTATED TRPV5 WILD-TYPE
  NO              0               4
  YES            11             163
D155V11, continuous
D155V12, continuous
D155V13, multiclass
                                             clus
vv                                            TRPV5 MUTATED TRPV5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D155V14, continuous

Clustering(156) Variable = DACH2 MUTATION ANALYSIS
D156V1, survival
                 sevent
clus2              0  1
  DACH2 MUTATED    5  4
  DACH2 WILD-TYPE 92 66
  DACH2 MUTATED DACH2 WILD-TYPE 
              9             158 
  DACH2 MUTATED DACH2 WILD-TYPE 
              4              66 
$`DACH2 MUTATED`
TCGA-21-1081 TCGA-22-4613 TCGA-33-4586 TCGA-34-5231 TCGA-34-5240 TCGA-51-4079 
        9.30        11.77        14.07        50.24         7.73         0.39 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2720 
        2.04         1.02         3.16 

$`DACH2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 
      115.59        46.88        60.89        34.78        15.55        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53       141.34        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        2.07        28.93         0.10        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  DACH2 MUTATED DACH2 WILD-TYPE 
           0.39            0.10 
  DACH2 MUTATED DACH2 WILD-TYPE 
          50.24          173.79 
  DACH2 MUTATED DACH2 WILD-TYPE 
           7.73           19.00 
[1] "0.4 - 50.2 (7.7)"   "0.1 - 173.8 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" "DACH2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "DACH2 MUTATED" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE"   "DACH2 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
[1] "hr=" "2.5"
D156V2, continuous
D156V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      5    4
  DACH2 WILD-TYPE   42  127
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  FEMALE             5              42
  MALE               4             127
D156V4, continuous
[1] "Remove cluster labels:" "DACH2 MUTATED"         
clus
  DACH2 MUTATED DACH2 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"DACH2 WILD-TYPE" "DACH2 WILD-TYPE" "DACH2 WILD-TYPE" 
D156V5, multiclass
                                                             clus
vv                                                            DACH2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            DACH2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
D156V6, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  T1             2              34
  T2             7             109
  T3             0              14
  T4             0              12
D156V7, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  N0             6             111
  N1             2              37
  N2             1              16
  N3             0               5
D156V8, multiclass
    clus
vv   DACH2 MUTATED DACH2 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             1               5
D156V9, multiclass
        clus
vv       DACH2 MUTATED DACH2 WILD-TYPE
  I                  5              92
  II                 2              36
  III+IV             1              40
D156V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DACH2 MUTATED      0    9
  DACH2 WILD-TYPE    4  165
     clus
vv    DACH2 MUTATED DACH2 WILD-TYPE
  NO              0               4
  YES             9             165
D156V11, continuous
D156V12, continuous
D156V13, multiclass
                                             clus
vv                                            DACH2 MUTATED DACH2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D156V14, continuous

Clustering(157) Variable = MYH8 MUTATION ANALYSIS
D157V1, survival
                sevent
clus2             0  1
  MYH8 MUTATED   10  9
  MYH8 WILD-TYPE 87 61
  MYH8 MUTATED MYH8 WILD-TYPE 
            19            148 
  MYH8 MUTATED MYH8 WILD-TYPE 
             9             61 
$`MYH8 MUTATED`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-21-5787 TCGA-22-5489 
       12.16        81.07        79.46         4.80        10.82        62.86 
TCGA-33-4586 TCGA-37-4133 TCGA-37-5819 TCGA-39-5022 TCGA-39-5036 TCGA-56-5897 
       14.07         7.82         3.39        55.17        35.64         0.10 
TCGA-60-2698 TCGA-60-2709 TCGA-66-2734 TCGA-66-2758 TCGA-66-2773 TCGA-66-2782 
       10.22        49.48        43.10        20.98         3.02        12.00 
TCGA-66-2787 
       40.01 

$`MYH8 WILD-TYPE`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
        4.47        46.52        11.34        13.02        59.51        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16       115.59        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 
       15.55         9.30        31.63        29.85        21.57         7.33 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        4.31         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       71.34        11.74        30.08        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         0.43         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.35        15.58         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        0.39         2.07        28.93         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       68.45        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       23.64        11.77        16.96        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99         0.99        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        1.02         2.01         2.01        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  MYH8 MUTATED MYH8 WILD-TYPE 
          0.10           0.36 
  MYH8 MUTATED MYH8 WILD-TYPE 
         81.07         173.79 
  MYH8 MUTATED MYH8 WILD-TYPE 
         14.07          17.98 
[1] "0.1 - 81.1 (14.1)"  "0.4 - 173.8 (18.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "MYH8 MUTATED" "MYH8 WILD-TYPE"   "MYH8 MUTATED"   "MYH8 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "MYH8 MUTATED" "MYH8 WILD-TYPE"   "MYH8 MUTATED"   "MYH8 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "MYH8 MUTATED" "MYH8 WILD-TYPE"   "MYH8 MUTATED"   "MYH8 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" "MYH8 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE"   "MYH8 MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "MYH8 MUTATED" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MYH8 WILD-TYPE" "MYH8 WILD-TYPE" "MYH8 WILD-TYPE" 
[1] "hr=" "1"  
D157V2, continuous
D157V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYH8 MUTATED      2   19
  MYH8 WILD-TYPE   45  112
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  FEMALE            2             45
  MALE             19            112
D157V4, continuous
D157V5, multiclass
                                                             clus
vv                                                            MYH8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           20
                                                             clus
vv                                                            MYH8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            152
D157V6, multiclass
    clus
vv   MYH8 MUTATED MYH8 WILD-TYPE
  T1            5             31
  T2           11            105
  T3            3             11
  T4            2             10
D157V7, multiclass
    clus
vv   MYH8 MUTATED MYH8 WILD-TYPE
  N0           16            101
  N1            2             37
  N2            3             14
  N3            0              5
D157V8, multiclass
    clus
vv   MYH8 MUTATED MYH8 WILD-TYPE
  M0           19            146
  M1            0              3
  MX            2              4
D157V9, multiclass
        clus
vv       MYH8 MUTATED MYH8 WILD-TYPE
  I                11             86
  II                3             35
  III+IV            6             35
D157V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MYH8 MUTATED      1   20
  MYH8 WILD-TYPE    3  154
     clus
vv    MYH8 MUTATED MYH8 WILD-TYPE
  NO             1              3
  YES           20            154
D157V11, continuous
D157V12, continuous
D157V13, multiclass
                                             clus
vv                                            MYH8 MUTATED MYH8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           13             81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 6             37
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    1              7
D157V14, continuous

Clustering(158) Variable = NAA38 MUTATION ANALYSIS
D158V1, survival
                 sevent
clus2              0  1
  NAA38 MUTATED    0  3
  NAA38 WILD-TYPE 97 67
  NAA38 MUTATED NAA38 WILD-TYPE 
              3             164 
  NAA38 MUTATED NAA38 WILD-TYPE 
              3              67 
$`NAA38 MUTATED`
TCGA-21-5787 TCGA-22-5480 TCGA-33-4582 
       10.82        71.34       103.53 

$`NAA38 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 
       63.52        14.60        44.22         0.79        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  NAA38 MUTATED NAA38 WILD-TYPE 
          10.82            0.10 
  NAA38 MUTATED NAA38 WILD-TYPE 
         103.53          173.79 
  NAA38 MUTATED NAA38 WILD-TYPE 
          71.34           17.42 
[1] "10.8 - 103.5 (71.3)" "0.1 - 173.8 (17.4)" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE"   "NAA38 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE"   "NAA38 MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE"   "NAA38 MUTATED" "NAA38 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE"   "NAA38 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE"   "NAA38 MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE"   "NAA38 MUTATED" "NAA38 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE"   "NAA38 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE"   "NAA38 MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE"   "NAA38 MUTATED" "NAA38 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
[1] "hr=" "1"  
D158V2, continuous
D158V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NAA38 MUTATED      1    2
  NAA38 WILD-TYPE   46  129
        clus
vv       NAA38 MUTATED NAA38 WILD-TYPE
  FEMALE             1              46
  MALE               2             129
D158V4, continuous
[1] "Remove cluster labels:" "NAA38 MUTATED"         
clus
  NAA38 MUTATED NAA38 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-22-4591      TCGA-22-4593 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5482      TCGA-22-5485 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
D158V5, multiclass
                                                             clus
vv                                                            NAA38 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             3
                                                             clus
vv                                                            NAA38 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             169
D158V6, multiclass
    clus
vv   NAA38 MUTATED NAA38 WILD-TYPE
  T1             2              34
  T2             1             115
  T3             0              14
  T4             0              12
D158V7, multiclass
    clus
vv   NAA38 MUTATED NAA38 WILD-TYPE
  N0             2             115
  N1             0              39
  N2             1              16
  N3             0               5
D158V8, multiclass
    clus
vv   NAA38 MUTATED NAA38 WILD-TYPE
  M0             3             162
  M1             0               3
  MX             0               6
D158V9, multiclass
        clus
vv       NAA38 MUTATED NAA38 WILD-TYPE
  I                  2              95
  II                 0              38
  III+IV             1              40
D158V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NAA38 MUTATED      1    2
  NAA38 WILD-TYPE    3  172
     clus
vv    NAA38 MUTATED NAA38 WILD-TYPE
  NO              1               3
  YES             2             172
D158V11, continuous
D158V12, continuous
[1] "Remove cluster labels:" "NAA38 MUTATED"         
clus
  NAA38 MUTATED NAA38 WILD-TYPE 
              2             125 
     TCGA-18-3407      TCGA-18-3408      TCGA-18-3409      TCGA-18-3412 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3414      TCGA-18-3415      TCGA-18-3417      TCGA-18-3419 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4086      TCGA-18-4721      TCGA-21-1070 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-21-5782      TCGA-22-1002      TCGA-22-1012      TCGA-22-1016 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-4613      TCGA-22-5471 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5478 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5489      TCGA-22-5492      TCGA-33-4533 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4583      TCGA-33-4586      TCGA-34-2596 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-2600      TCGA-34-2608      TCGA-34-5234      TCGA-34-5241 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-34-5928      TCGA-34-5929      TCGA-37-4133      TCGA-37-4135 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5021      TCGA-39-5022 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-2578      TCGA-43-3920      TCGA-43-5668 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-43-6143      TCGA-43-6647      TCGA-43-6771      TCGA-46-6025 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-46-6026      TCGA-51-4079      TCGA-51-4080      TCGA-56-1622 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-6545      TCGA-56-6546      TCGA-60-2698 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2710      TCGA-60-2711 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-63-5128      TCGA-63-5131 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2786      TCGA-66-2787      TCGA-66-2788 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2789      TCGA-66-2791      TCGA-66-2792      TCGA-66-2793 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800      TCGA-85-6560 
"NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" "NAA38 WILD-TYPE" 
     TCGA-85-6561 
"NAA38 WILD-TYPE" 
D158V13, multiclass
                                             clus
vv                                            NAA38 MUTATED NAA38 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  0              43
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D158V14, continuous

Clustering(159) Variable = PCDH11X MUTATION ANALYSIS
D159V1, survival
                   sevent
clus2                0  1
  PCDH11X MUTATED   16 10
  PCDH11X WILD-TYPE 81 60
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               26               141 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
               10                60 
$`PCDH11X MUTATED`
TCGA-18-3421 TCGA-21-1070 TCGA-21-1076 TCGA-21-5786 TCGA-22-4599 TCGA-22-4613 
       43.76       115.59        60.89        21.57        38.17        11.77 
TCGA-22-5477 TCGA-22-5492 TCGA-34-5232 TCGA-34-5234 TCGA-34-5929 TCGA-37-3789 
       44.22        16.60        51.78        32.68         4.96         0.43 
TCGA-37-5819 TCGA-39-5016 TCGA-56-1622 TCGA-56-6545 TCGA-60-2710 TCGA-66-2756 
        3.39        74.07        28.93         2.04        55.40         0.99 
TCGA-66-2768 TCGA-66-2773 TCGA-66-2781 TCGA-66-2782 TCGA-66-2789 TCGA-66-2793 
        2.01         3.02         3.98        12.00         4.04        10.06 
TCGA-66-2795 TCGA-85-6560 
        4.01         0.36 

$`PCDH11X WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 
       34.78        15.55         9.30        31.63        29.85        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 
       35.08        24.13        34.75        13.12        19.30        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       64.90        63.52        14.60         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        56.32        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 
        2.63        61.61        32.84        50.24         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-4133 
        7.73        14.07        22.95         5.52         3.95         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        6.81         0.39        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 
        0.95         0.59         0.39         0.39         2.07         0.10 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 
        1.02        10.22        21.70        68.45        49.48        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2783 
       23.01        19.00         2.01        19.00        12.03        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        40.01        22.98         5.03        30.02 
TCGA-66-2794 TCGA-66-2800 TCGA-85-6561 
       54.08        49.05         0.79 

  PCDH11X MUTATED PCDH11X WILD-TYPE 
             0.36              0.10 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
           115.59            173.79 
  PCDH11X MUTATED PCDH11X WILD-TYPE 
           11.885            18.840 
[1] "0.4 - 115.6 (11.9)" "0.1 - 173.8 (18.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED"   "PCDH11X MUTATED" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "PCDH11X MUTATED"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED"   "PCDH11X MUTATED" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "PCDH11X MUTATED"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED"   "PCDH11X MUTATED" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "PCDH11X MUTATED"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
  "PCDH11X MUTATED" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"PCDH11X WILD-TYPE" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE"   "PCDH11X MUTATED" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"PCDH11X WILD-TYPE"   "PCDH11X MUTATED" "PCDH11X WILD-TYPE" 
[1] "hr=" "1"  
D159V2, continuous
D159V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED     10   17
  PCDH11X WILD-TYPE   37  114
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  FEMALE              10                37
  MALE                17               114
D159V4, continuous
D159V5, multiclass
                                                             clus
vv                                                            PCDH11X MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              26
                                                             clus
vv                                                            PCDH11X WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               146
D159V6, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  T1               6                30
  T2              16               100
  T3               2                12
  T4               3                 9
D159V7, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  N0              16               101
  N1               8                31
  N2               2                15
  N3               1                 4
D159V8, multiclass
    clus
vv   PCDH11X MUTATED PCDH11X WILD-TYPE
  M0              26               139
  M1               0                 3
  MX               0                 6
D159V9, multiclass
        clus
vv       PCDH11X MUTATED PCDH11X WILD-TYPE
  I                   13                84
  II                   6                32
  III+IV               8                33
D159V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  PCDH11X MUTATED      0   27
  PCDH11X WILD-TYPE    4  147
     clus
vv    PCDH11X MUTATED PCDH11X WILD-TYPE
  NO                0                 4
  YES              27               147
D159V11, continuous
D159V12, continuous
D159V13, multiclass
                                             clus
vv                                            PCDH11X MUTATED PCDH11X WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              16                78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                38
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       2                 6
D159V14, continuous

Clustering(160) Variable = FTMT MUTATION ANALYSIS
D160V1, survival
                sevent
clus2             0  1
  FTMT MUTATED    5  1
  FTMT WILD-TYPE 92 69
  FTMT MUTATED FTMT WILD-TYPE 
             6            161 
  FTMT MUTATED FTMT WILD-TYPE 
             1             69 
$`FTMT MUTATED`
TCGA-18-3409 TCGA-18-3414 TCGA-18-3417 TCGA-60-2720 TCGA-66-2763 TCGA-66-2792 
       79.46        13.02        24.92         3.16         0.99        30.02 

$`FTMT WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 
       25.97        40.01        22.98         4.04         5.03        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  FTMT MUTATED FTMT WILD-TYPE 
          0.99           0.10 
  FTMT MUTATED FTMT WILD-TYPE 
         79.46         173.79 
  FTMT MUTATED FTMT WILD-TYPE 
         18.97          17.88 
[1] "1.0 - 79.5 (19.0)"  "0.1 - 173.8 (17.9)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" "FTMT WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "FTMT MUTATED" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "FTMT MUTATED" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" "FTMT WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "FTMT MUTATED" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "FTMT MUTATED" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" "FTMT WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE"   "FTMT MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "FTMT MUTATED" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "FTMT MUTATED" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
[1] "hr=" "2.6"
D160V2, continuous
D160V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FTMT MUTATED      2    4
  FTMT WILD-TYPE   45  127
        clus
vv       FTMT MUTATED FTMT WILD-TYPE
  FEMALE            2             45
  MALE              4            127
D160V4, continuous
[1] "Remove cluster labels:" "FTMT MUTATED"          
clus
  FTMT MUTATED FTMT WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3419 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5787     TCGA-22-4591     TCGA-22-4593 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-4595     TCGA-22-4599     TCGA-22-4601     TCGA-22-4604 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"FTMT WILD-TYPE" "FTMT WILD-TYPE" "FTMT WILD-TYPE" 
D160V5, multiclass
                                                             clus
vv                                                            FTMT MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            5
                                                             clus
vv                                                            FTMT WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            167
D160V6, multiclass
    clus
vv   FTMT MUTATED FTMT WILD-TYPE
  T1            1             35
  T2            4            112
  T3            0             14
  T4            1             11
D160V7, multiclass
    clus
vv   FTMT MUTATED FTMT WILD-TYPE
  N0            3            114
  N1            3             36
  N2            0             17
  N3            0              5
D160V8, multiclass
    clus
vv   FTMT MUTATED FTMT WILD-TYPE
  M0            4            161
  M1            2              1
  MX            0              6
D160V9, multiclass
        clus
vv       FTMT MUTATED FTMT WILD-TYPE
  I                 2             95
  II                1             37
  III+IV            2             39
D160V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  FTMT MUTATED      0    6
  FTMT WILD-TYPE    4  168
     clus
vv    FTMT MUTATED FTMT WILD-TYPE
  NO             0              4
  YES            6            168
D160V11, continuous
D160V12, continuous
D160V13, multiclass
                                             clus
vv                                            FTMT MUTATED FTMT WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    0              8
D160V14, continuous

Clustering(161) Variable = OR4N4 MUTATION ANALYSIS
D161V1, survival
                 sevent
clus2              0  1
  OR4N4 MUTATED    3  3
  OR4N4 WILD-TYPE 94 67
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              6             161 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              3              67 
$`OR4N4 MUTATED`
TCGA-18-3421 TCGA-22-4613 TCGA-51-4079 TCGA-66-2767 TCGA-66-2771 TCGA-66-2791 
       43.76        11.77         0.39         2.01        19.00         5.03 

$`OR4N4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        2.01         1.02         2.01        23.01         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01        22.98         4.04        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  OR4N4 MUTATED OR4N4 WILD-TYPE 
           0.39            0.10 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
          43.76          173.79 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
           8.40           18.08 
[1] "0.4 - 43.8 (8.4)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
[1] "hr=" "2.1"
D161V2, continuous
D161V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N4 MUTATED      2    6
  OR4N4 WILD-TYPE   45  125
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  FEMALE             2              45
  MALE               6             125
D161V4, continuous
[1] "Remove cluster labels:" "OR4N4 MUTATED"         
clus
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
D161V5, multiclass
                                                             clus
vv                                                            OR4N4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR4N4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D161V6, multiclass
    clus
vv   OR4N4 MUTATED OR4N4 WILD-TYPE
  T1             2              34
  T2             5             111
  T3             1              13
  T4             0              12
D161V7, multiclass
    clus
vv   OR4N4 MUTATED OR4N4 WILD-TYPE
  N0             5             112
  N1             1              38
  N2             0              17
  N3             2               3
D161V8, multiclass
    clus
vv   OR4N4 MUTATED OR4N4 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
D161V9, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             2              39
D161V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N4 MUTATED      0    8
  OR4N4 WILD-TYPE    4  166
     clus
vv    OR4N4 MUTATED OR4N4 WILD-TYPE
  NO              0               4
  YES             8             166
D161V11, continuous
D161V12, continuous
D161V13, multiclass
                                             clus
vv                                            OR4N4 MUTATED OR4N4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D161V14, continuous

Clustering(162) Variable = NKX2-2 MUTATION ANALYSIS
D162V1, survival
                  sevent
clus2               0  1
  NKX2-2 MUTATED    3  3
  NKX2-2 WILD-TYPE 94 67
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
               6              161 
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
               3               67 
$`NKX2-2 MUTATED`
TCGA-22-5482 TCGA-33-6737 TCGA-39-5031 TCGA-56-6546 TCGA-66-2773 TCGA-66-2783 
       11.74        19.76        27.35         1.02         3.02        24.95 

$`NKX2-2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 
       60.76         1.71        24.33         1.94        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        2.04        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        1.02         2.01         2.01        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
            1.02             0.10 
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
           27.35           173.79 
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
           15.75            17.88 
[1] "1.0 - 27.4 (15.8)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NKX2-2 WILD-TYPE"   "NKX2-2 MUTATED" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
[1] "hr=" "1.9"
D162V2, continuous
D162V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NKX2-2 MUTATED      1    5
  NKX2-2 WILD-TYPE   46  126
        clus
vv       NKX2-2 MUTATED NKX2-2 WILD-TYPE
  FEMALE              1               46
  MALE                5              126
D162V4, continuous
[1] "Remove cluster labels:" "NKX2-2 MUTATED"        
clus
  NKX2-2 MUTATED NKX2-2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" "NKX2-2 WILD-TYPE" 
D162V5, multiclass
                                                             clus
vv                                                            NKX2-2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            NKX2-2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
D162V6, multiclass
    clus
vv   NKX2-2 MUTATED NKX2-2 WILD-TYPE
  T1              1               35
  T2              5              111
  T3              0               14
  T4              0               12
D162V7, multiclass
    clus
vv   NKX2-2 MUTATED NKX2-2 WILD-TYPE
  N0              4              113
  N1              0               39
  N2              1               16
  N3              1                4
D162V8, multiclass
    clus
vv   NKX2-2 MUTATED NKX2-2 WILD-TYPE
  M0              5              160
  M1              0                3
  MX              1                5
D162V9, multiclass
        clus
vv       NKX2-2 MUTATED NKX2-2 WILD-TYPE
  I                   3               94
  II                  0               38
  III+IV              2               39
D162V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NKX2-2 MUTATED      0    6
  NKX2-2 WILD-TYPE    4  168
     clus
vv    NKX2-2 MUTATED NKX2-2 WILD-TYPE
  NO               0                4
  YES              6              168
D162V11, continuous
D162V12, continuous
D162V13, multiclass
                                             clus
vv                                            NKX2-2 MUTATED NKX2-2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D162V14, continuous

Clustering(163) Variable = HIST1H2BF MUTATION ANALYSIS
D163V1, survival
                     sevent
clus2                  0  1
  HIST1H2BF MUTATED    2  2
  HIST1H2BF WILD-TYPE 95 68
  HIST1H2BF MUTATED HIST1H2BF WILD-TYPE 
                  4                 163 
  HIST1H2BF MUTATED HIST1H2BF WILD-TYPE 
                  2                  68 
$`HIST1H2BF MUTATED`
TCGA-33-6737 TCGA-34-2600 TCGA-43-5668 TCGA-56-6545 
       19.76        61.61         8.48         2.04 

$`HIST1H2BF WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       14.07         2.63        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  HIST1H2BF MUTATED HIST1H2BF WILD-TYPE 
               2.04                0.10 
  HIST1H2BF MUTATED HIST1H2BF WILD-TYPE 
              61.61              173.79 
  HIST1H2BF MUTATED HIST1H2BF WILD-TYPE 
              14.12               17.88 
[1] "2.0 - 61.6 (14.1)"  "0.1 - 173.8 (17.9)"
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST1H2BF WILD-TYPE"   "HIST1H2BF MUTATED" "HIST1H2BF WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
  "HIST1H2BF MUTATED" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE"   "HIST1H2BF MUTATED" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
  "HIST1H2BF MUTATED" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST1H2BF WILD-TYPE"   "HIST1H2BF MUTATED" "HIST1H2BF WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
  "HIST1H2BF MUTATED" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE"   "HIST1H2BF MUTATED" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
  "HIST1H2BF MUTATED" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST1H2BF WILD-TYPE"   "HIST1H2BF MUTATED" "HIST1H2BF WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
  "HIST1H2BF MUTATED" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE"   "HIST1H2BF MUTATED" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
  "HIST1H2BF MUTATED" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
[1] "hr=" "1.4"
D163V2, continuous
D163V3, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST1H2BF MUTATED      2    2
  HIST1H2BF WILD-TYPE   45  129
        clus
vv       HIST1H2BF MUTATED HIST1H2BF WILD-TYPE
  FEMALE                 2                  45
  MALE                   2                 129
D163V4, continuous
D163V5, multiclass
                                                             clus
vv                                                            HIST1H2BF MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 4
                                                             clus
vv                                                            HIST1H2BF WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                         5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                        1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 168
D163V6, multiclass
    clus
vv   HIST1H2BF MUTATED HIST1H2BF WILD-TYPE
  T1                 2                  34
  T2                 2                 114
  T3                 0                  14
  T4                 0                  12
D163V7, multiclass
    clus
vv   HIST1H2BF MUTATED HIST1H2BF WILD-TYPE
  N0                 2                 115
  N1                 1                  38
  N2                 1                  16
  N3                 0                   5
D163V8, multiclass
    clus
vv   HIST1H2BF MUTATED HIST1H2BF WILD-TYPE
  M0                 4                 161
  M1                 0                   3
  MX                 0                   6
D163V9, multiclass
        clus
vv       HIST1H2BF MUTATED HIST1H2BF WILD-TYPE
  I                      2                  95
  II                     1                  37
  III+IV                 1                  40
D163V10, binary
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST1H2BF MUTATED      0    4
  HIST1H2BF WILD-TYPE    4  170
     clus
vv    HIST1H2BF MUTATED HIST1H2BF WILD-TYPE
  NO                  0                   4
  YES                 4                 170
D163V11, continuous
D163V12, continuous
D163V13, multiclass
                                             clus
vv                                            HIST1H2BF MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      1
  CURRENT SMOKER                                              0
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            HIST1H2BF WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       42
  CURRENT SMOKER                                               28
  LIFELONG NON-SMOKER                                           8
D163V14, continuous
[1] "Remove cluster labels:" "HIST1H2BF MUTATED"     
clus
  HIST1H2BF MUTATED HIST1H2BF WILD-TYPE 
                  1                 104 
         TCGA-18-3406          TCGA-18-3417          TCGA-21-1078 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5786          TCGA-21-5787 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-0944          TCGA-22-1002          TCGA-22-1011 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-1012          TCGA-22-1016          TCGA-22-4591 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-4593          TCGA-22-4607          TCGA-22-4613 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-22-5480          TCGA-22-5482          TCGA-22-5492 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4547          TCGA-33-4582 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-33-4583          TCGA-33-4586          TCGA-34-5240 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-34-5241          TCGA-37-4133          TCGA-37-4135 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-37-5819          TCGA-39-5021          TCGA-39-5022 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5024          TCGA-39-5027          TCGA-39-5028 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5029          TCGA-39-5030          TCGA-39-5031 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5035          TCGA-39-5036          TCGA-39-5037 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-39-5039          TCGA-43-2578          TCGA-43-3394 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-43-3920          TCGA-43-6143          TCGA-43-6647 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-43-6770          TCGA-43-6771          TCGA-56-1622 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-56-5898          TCGA-56-6546          TCGA-60-2707 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2708          TCGA-60-2709          TCGA-60-2710 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2711          TCGA-60-2712          TCGA-60-2713 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2715          TCGA-60-2719          TCGA-60-2720 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2721          TCGA-60-2723          TCGA-60-2724 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-60-2725          TCGA-60-2726          TCGA-63-6202 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2727          TCGA-66-2734          TCGA-66-2742 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2744          TCGA-66-2754          TCGA-66-2755 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2756          TCGA-66-2757          TCGA-66-2758 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2759          TCGA-66-2763          TCGA-66-2765 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2766          TCGA-66-2767          TCGA-66-2770 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2771          TCGA-66-2773          TCGA-66-2777 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2778          TCGA-66-2780          TCGA-66-2781 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2782          TCGA-66-2783          TCGA-66-2786 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST1H2BF WILD-TYPE" "HIST1H2BF WILD-TYPE" 

Clustering(164) Variable = CLLU1OS MUTATION ANALYSIS
D164V1, survival
                   sevent
clus2                0  1
  CLLU1OS MUTATED    2  2
  CLLU1OS WILD-TYPE 95 68
  CLLU1OS MUTATED CLLU1OS WILD-TYPE 
                4               163 
  CLLU1OS MUTATED CLLU1OS WILD-TYPE 
                2                68 
$`CLLU1OS MUTATED`
TCGA-22-5492 TCGA-33-4566 TCGA-37-5819 TCGA-66-2756 
       16.60       173.79         3.39         0.99 

$`CLLU1OS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 
       11.74        30.08        62.86        56.32        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  CLLU1OS MUTATED CLLU1OS WILD-TYPE 
             0.99              0.10 
  CLLU1OS MUTATED CLLU1OS WILD-TYPE 
           173.79            141.34 
  CLLU1OS MUTATED CLLU1OS WILD-TYPE 
            9.995            18.080 
[1] "1.0 - 173.8 (10.0)" "0.1 - 141.3 (18.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CLLU1OS WILD-TYPE"   "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CLLU1OS WILD-TYPE"   "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CLLU1OS WILD-TYPE"   "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "CLLU1OS MUTATED" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
[1] "hr=" "2.1"
D164V2, continuous
D164V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLLU1OS MUTATED      1    3
  CLLU1OS WILD-TYPE   46  128
        clus
vv       CLLU1OS MUTATED CLLU1OS WILD-TYPE
  FEMALE               1                46
  MALE                 3               128
D164V4, continuous
[1] "Remove cluster labels:" "CLLU1OS MUTATED"       
clus
  CLLU1OS MUTATED CLLU1OS WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-60-2698 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"CLLU1OS WILD-TYPE" "CLLU1OS WILD-TYPE" 
D164V5, multiclass
                                                             clus
vv                                                            CLLU1OS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               4
                                                             clus
vv                                                            CLLU1OS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               168
D164V6, multiclass
    clus
vv   CLLU1OS MUTATED CLLU1OS WILD-TYPE
  T1               0                36
  T2               3               113
  T3               0                14
  T4               1                11
D164V7, multiclass
    clus
vv   CLLU1OS MUTATED CLLU1OS WILD-TYPE
  N0               2               115
  N1               0                39
  N2               2                15
  N3               0                 5
D164V8, multiclass
    clus
vv   CLLU1OS MUTATED CLLU1OS WILD-TYPE
  M0               4               161
  M1               0                 3
  MX               0                 6
D164V9, multiclass
        clus
vv       CLLU1OS MUTATED CLLU1OS WILD-TYPE
  I                    1                96
  II                   0                38
  III+IV               3                38
D164V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CLLU1OS MUTATED      0    4
  CLLU1OS WILD-TYPE    4  170
     clus
vv    CLLU1OS MUTATED CLLU1OS WILD-TYPE
  NO                0                 4
  YES               4               170
D164V11, continuous
D164V12, continuous
D164V13, multiclass
                                             clus
vv                                            CLLU1OS MUTATED CLLU1OS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D164V14, continuous

Clustering(165) Variable = CD1B MUTATION ANALYSIS
D165V1, survival
                sevent
clus2             0  1
  CD1B MUTATED    4  1
  CD1B WILD-TYPE 93 69
  CD1B MUTATED CD1B WILD-TYPE 
             5            162 
  CD1B MUTATED CD1B WILD-TYPE 
             1             69 
$`CD1B MUTATED`
TCGA-21-5784 TCGA-34-2600 TCGA-34-5231 TCGA-37-4141 TCGA-66-2788 
       29.85        61.61        50.24         0.39        22.98 

$`CD1B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       19.76         2.63        32.84        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        3.95         0.43         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        40.01         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  CD1B MUTATED CD1B WILD-TYPE 
          0.39           0.10 
  CD1B MUTATED CD1B WILD-TYPE 
         61.61         173.79 
  CD1B MUTATED CD1B WILD-TYPE 
         29.85          16.78 
[1] "0.4 - 61.6 (29.9)"  "0.1 - 173.8 (16.8)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD1B WILD-TYPE"   "CD1B MUTATED" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE"   "CD1B MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD1B WILD-TYPE"   "CD1B MUTATED" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE"   "CD1B MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD1B WILD-TYPE"   "CD1B MUTATED" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD1B WILD-TYPE"   "CD1B MUTATED" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE"   "CD1B MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD1B WILD-TYPE"   "CD1B MUTATED" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE"   "CD1B MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD1B WILD-TYPE"   "CD1B MUTATED" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD1B WILD-TYPE"   "CD1B MUTATED" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE"   "CD1B MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD1B WILD-TYPE"   "CD1B MUTATED" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE"   "CD1B MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD1B WILD-TYPE"   "CD1B MUTATED" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
[1] "hr=" "2.6"
D165V2, continuous
D165V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1B MUTATED      3    3
  CD1B WILD-TYPE   44  128
        clus
vv       CD1B MUTATED CD1B WILD-TYPE
  FEMALE            3             44
  MALE              3            128
D165V4, continuous
D165V5, multiclass
                                                             clus
vv                                                            CD1B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            6
                                                             clus
vv                                                            CD1B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            166
D165V6, multiclass
    clus
vv   CD1B MUTATED CD1B WILD-TYPE
  T1            4             32
  T2            2            114
  T3            0             14
  T4            0             12
D165V7, multiclass
    clus
vv   CD1B MUTATED CD1B WILD-TYPE
  N0            6            111
  N1            0             39
  N2            0             17
  N3            0              5
D165V8, multiclass
    clus
vv   CD1B MUTATED CD1B WILD-TYPE
  M0            6            159
  M1            0              3
  MX            0              6
D165V9, multiclass
        clus
vv       CD1B MUTATED CD1B WILD-TYPE
  I                 6             91
  II                0             38
  III+IV            0             41
D165V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD1B MUTATED      0    6
  CD1B WILD-TYPE    4  168
     clus
vv    CD1B MUTATED CD1B WILD-TYPE
  NO             0              4
  YES            6            168
D165V11, continuous
D165V12, continuous
[1] "Remove cluster labels:" "CD1B MUTATED"          
clus
  CD1B MUTATED CD1B WILD-TYPE 
             2            125 
    TCGA-18-3407     TCGA-18-3408     TCGA-18-3409     TCGA-18-3412 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3414     TCGA-18-3415     TCGA-18-3417     TCGA-18-3419 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4086     TCGA-18-4721     TCGA-21-1070 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5787     TCGA-22-1002     TCGA-22-1012 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4593     TCGA-22-4607     TCGA-22-4613 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5471     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5489 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4533     TCGA-33-4547     TCGA-33-4583 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-33-4586     TCGA-34-2596     TCGA-34-2608     TCGA-34-5234 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-34-5241     TCGA-34-5928     TCGA-34-5929     TCGA-37-4133 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-37-4135     TCGA-37-5819     TCGA-39-5016     TCGA-39-5021 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5039     TCGA-43-2578     TCGA-43-3920 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-43-5668     TCGA-43-6143     TCGA-43-6647     TCGA-43-6771 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-56-1622     TCGA-56-5897     TCGA-56-6545     TCGA-56-6546 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2707     TCGA-60-2708     TCGA-60-2710 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2711     TCGA-60-2712     TCGA-60-2715     TCGA-60-2719 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2720     TCGA-60-2721     TCGA-60-2722     TCGA-60-2723 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-63-5128 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-63-5131     TCGA-63-6202     TCGA-66-2727     TCGA-66-2734 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2770     TCGA-66-2771     TCGA-66-2773     TCGA-66-2777 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2778     TCGA-66-2780     TCGA-66-2781     TCGA-66-2782 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2783     TCGA-66-2785     TCGA-66-2786     TCGA-66-2787 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2789     TCGA-66-2791     TCGA-66-2792     TCGA-66-2793 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2794     TCGA-66-2795     TCGA-66-2800     TCGA-85-6560 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-85-6561 
"CD1B WILD-TYPE" 
D165V13, multiclass
                                             clus
vv                                            CD1B MUTATED CD1B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             42
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    2              6
D165V14, continuous
[1] "Remove cluster labels:" "CD1B MUTATED"          
clus
  CD1B MUTATED CD1B WILD-TYPE 
             1            104 
    TCGA-18-3406     TCGA-18-3417     TCGA-21-1078     TCGA-21-5782 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-21-5786     TCGA-21-5787     TCGA-22-0944     TCGA-22-1002 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-1011     TCGA-22-1012     TCGA-22-1016     TCGA-22-4591 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4607     TCGA-22-4613     TCGA-22-5472 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5473     TCGA-22-5474     TCGA-22-5480     TCGA-22-5482 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4533     TCGA-33-4547     TCGA-33-4582 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-33-4583     TCGA-33-4586     TCGA-34-5240     TCGA-34-5241 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-39-5021 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-6143     TCGA-43-6647 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-43-6770     TCGA-43-6771     TCGA-56-1622     TCGA-56-5898 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2707     TCGA-60-2708 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2723     TCGA-60-2724     TCGA-60-2725 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-60-2726     TCGA-63-6202     TCGA-66-2727     TCGA-66-2734 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2770     TCGA-66-2771     TCGA-66-2773     TCGA-66-2777 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2778     TCGA-66-2780     TCGA-66-2781     TCGA-66-2782 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2783     TCGA-66-2786     TCGA-66-2787     TCGA-66-2789 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" "CD1B WILD-TYPE" 

Clustering(166) Variable = CNKSR2 MUTATION ANALYSIS
D166V1, survival
                  sevent
clus2               0  1
  CNKSR2 MUTATED    5  6
  CNKSR2 WILD-TYPE 92 64
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
              11              156 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
               6               64 
$`CNKSR2 MUTATED`
TCGA-22-1016 TCGA-22-5477 TCGA-22-5492 TCGA-34-2600 TCGA-37-4133 TCGA-37-4135 
       27.02        44.22        16.60        61.61         7.82         6.81 
TCGA-60-2698 TCGA-60-2726 TCGA-66-2759 TCGA-66-2795 TCGA-85-6560 
       10.22        11.77        25.02         4.01         0.36 

$`CNKSR2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        1.74        14.10        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       63.52        14.60         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.43         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        2.07        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
        1.22        23.64        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
        2.01         0.92         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6561 
        5.03        30.02        10.06        54.08        49.05         0.79 

  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
            0.36             0.10 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
           61.61           173.79 
  CNKSR2 MUTATED CNKSR2 WILD-TYPE 
           11.77            18.46 
[1] "0.4 - 61.6 (11.8)"  "0.1 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE" "CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CNKSR2 WILD-TYPE"   "CNKSR2 MUTATED" "CNKSR2 WILD-TYPE" 
[1] "hr=" "1.8"
D166V2, continuous
D166V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CNKSR2 MUTATED      2   10
  CNKSR2 WILD-TYPE   45  121
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  FEMALE              2               45
  MALE               10              121
D166V4, continuous
D166V5, multiclass
                                                             clus
vv                                                            CNKSR2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             12
                                                             clus
vv                                                            CNKSR2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              160
D166V6, multiclass
    clus
vv   CNKSR2 MUTATED CNKSR2 WILD-TYPE
  T1              2               34
  T2              8              108
  T3              0               14
  T4              2               10
D166V7, multiclass
    clus
vv   CNKSR2 MUTATED CNKSR2 WILD-TYPE
  N0              6              111
  N1              4               35
  N2              2               15
  N3              0                5
D166V8, multiclass
    clus
vv   CNKSR2 MUTATED CNKSR2 WILD-TYPE
  M0             12              153
  M1              0                3
  MX              0                6
D166V9, multiclass
        clus
vv       CNKSR2 MUTATED CNKSR2 WILD-TYPE
  I                   4               93
  II                  2               36
  III+IV              6               35
D166V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CNKSR2 MUTATED      0   12
  CNKSR2 WILD-TYPE    4  162
     clus
vv    CNKSR2 MUTATED CNKSR2 WILD-TYPE
  NO               0                4
  YES             12              162
D166V11, continuous
D166V12, continuous
D166V13, multiclass
                                             clus
vv                                            CNKSR2 MUTATED CNKSR2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D166V14, continuous

Clustering(167) Variable = APLNR MUTATION ANALYSIS
D167V1, survival
                 sevent
clus2              0  1
  APLNR MUTATED    4  3
  APLNR WILD-TYPE 93 67
  APLNR MUTATED APLNR WILD-TYPE 
              7             160 
  APLNR MUTATED APLNR WILD-TYPE 
              3              67 
$`APLNR MUTATED`
TCGA-18-3409 TCGA-22-1002 TCGA-33-4533 TCGA-33-4566 TCGA-34-5929 TCGA-66-2771 
       79.46         4.31       114.05       173.79         4.96        19.00 
TCGA-66-2786 
       25.97 

$`APLNR WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57        10.82         7.33         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60        82.98        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 
        7.73        14.07        22.95         5.52         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        23.01         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
       12.03         3.98        12.00        24.95         1.94        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  APLNR MUTATED APLNR WILD-TYPE 
           4.31            0.10 
  APLNR MUTATED APLNR WILD-TYPE 
         173.79          141.34 
  APLNR MUTATED APLNR WILD-TYPE 
          25.97           16.78 
[1] "4.3 - 173.8 (26.0)" "0.1 - 141.3 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" "APLNR WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE"   "APLNR MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"APLNR WILD-TYPE" "APLNR WILD-TYPE" "APLNR WILD-TYPE" 
[1] "hr=" "2.9"
D167V2, continuous
D167V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  APLNR MUTATED      3    4
  APLNR WILD-TYPE   44  127
        clus
vv       APLNR MUTATED APLNR WILD-TYPE
  FEMALE             3              44
  MALE               4             127
D167V4, continuous
D167V5, multiclass
                                                             clus
vv                                                            APLNR MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            APLNR WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D167V6, multiclass
    clus
vv   APLNR MUTATED APLNR WILD-TYPE
  T1             3              33
  T2             4             112
  T3             0              14
  T4             0              12
D167V7, multiclass
    clus
vv   APLNR MUTATED APLNR WILD-TYPE
  N0             6             111
  N1             1              38
  N2             0              17
  N3             0               5
D167V8, multiclass
    clus
vv   APLNR MUTATED APLNR WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
D167V9, multiclass
        clus
vv       APLNR MUTATED APLNR WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             0              41
D167V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  APLNR MUTATED      0    7
  APLNR WILD-TYPE    4  167
     clus
vv    APLNR MUTATED APLNR WILD-TYPE
  NO              0               4
  YES             7             167
D167V11, continuous
D167V12, continuous
D167V13, multiclass
                                             clus
vv                                            APLNR MUTATED APLNR WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D167V14, continuous

Clustering(168) Variable = SCHIP1 MUTATION ANALYSIS
D168V1, survival
                  sevent
clus2               0  1
  SCHIP1 MUTATED    3  2
  SCHIP1 WILD-TYPE 94 68
  SCHIP1 MUTATED SCHIP1 WILD-TYPE 
               5              162 
  SCHIP1 MUTATED SCHIP1 WILD-TYPE 
               2               68 
$`SCHIP1 MUTATED`
TCGA-33-4566 TCGA-34-5929 TCGA-43-5668 TCGA-66-2744 TCGA-66-2785 
      173.79         4.96         8.48         0.99         1.94 

$`SCHIP1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 
       11.77        16.96        43.10        21.07         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  SCHIP1 MUTATED SCHIP1 WILD-TYPE 
            0.99             0.10 
  SCHIP1 MUTATED SCHIP1 WILD-TYPE 
          173.79           141.34 
  SCHIP1 MUTATED SCHIP1 WILD-TYPE 
            4.96            18.46 
[1] "1.0 - 173.8 (5.0)"  "0.1 - 141.3 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE"   "SCHIP1 MUTATED" "SCHIP1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
[1] "hr=" "1.9"
D168V2, continuous
D168V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SCHIP1 MUTATED      1    5
  SCHIP1 WILD-TYPE   46  126
        clus
vv       SCHIP1 MUTATED SCHIP1 WILD-TYPE
  FEMALE              1               46
  MALE                5              126
D168V4, continuous
D168V5, multiclass
                                                             clus
vv                                                            SCHIP1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            SCHIP1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
D168V6, multiclass
    clus
vv   SCHIP1 MUTATED SCHIP1 WILD-TYPE
  T1              1               35
  T2              5              111
  T3              0               14
  T4              0               12
D168V7, multiclass
    clus
vv   SCHIP1 MUTATED SCHIP1 WILD-TYPE
  N0              4              113
  N1              2               37
  N2              0               17
  N3              0                5
D168V8, multiclass
    clus
vv   SCHIP1 MUTATED SCHIP1 WILD-TYPE
  M0              6              159
  M1              0                3
  MX              0                6
D168V9, multiclass
        clus
vv       SCHIP1 MUTATED SCHIP1 WILD-TYPE
  I                   3               94
  II                  3               35
  III+IV              0               41
D168V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SCHIP1 MUTATED      0    6
  SCHIP1 WILD-TYPE    4  168
     clus
vv    SCHIP1 MUTATED SCHIP1 WILD-TYPE
  NO               0                4
  YES              6              168
D168V11, continuous
D168V12, continuous
D168V13, multiclass
                                             clus
vv                                            SCHIP1 MUTATED SCHIP1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D168V14, continuous
[1] "Remove cluster labels:" "SCHIP1 MUTATED"        
clus
  SCHIP1 MUTATED SCHIP1 WILD-TYPE 
               2              103 
      TCGA-18-3406       TCGA-18-3417       TCGA-21-1078       TCGA-21-5782 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-21-5786       TCGA-21-5787       TCGA-22-0944       TCGA-22-1002 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-1011       TCGA-22-1012       TCGA-22-1016       TCGA-22-4591 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4607       TCGA-22-4613       TCGA-22-5472 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5473       TCGA-22-5474       TCGA-22-5480       TCGA-22-5482 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4533       TCGA-33-4547       TCGA-33-4582 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-33-4583       TCGA-33-4586       TCGA-34-5240       TCGA-34-5241 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-39-5021 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-6143       TCGA-43-6647 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-56-1622       TCGA-56-5898 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2707       TCGA-60-2708 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2723       TCGA-60-2724       TCGA-60-2725 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-60-2726       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2754       TCGA-66-2755       TCGA-66-2756       TCGA-66-2757 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2758       TCGA-66-2759       TCGA-66-2763       TCGA-66-2765 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2766       TCGA-66-2767       TCGA-66-2770       TCGA-66-2771 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2786 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" "SCHIP1 WILD-TYPE" 

Clustering(169) Variable = TUBA3C MUTATION ANALYSIS
D169V1, survival
                  sevent
clus2               0  1
  TUBA3C MUTATED    6  1
  TUBA3C WILD-TYPE 91 69
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               7              160 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
               1               69 
$`TUBA3C MUTATED`
TCGA-18-3408 TCGA-33-4582 TCGA-34-5231 TCGA-39-5019 TCGA-39-5036 TCGA-60-2721 
       81.07       103.53        50.24        44.71        35.64        26.07 
TCGA-66-2767 
        2.01 

$`TUBA3C WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       173.79       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        32.84        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.35        15.58         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 
        9.01        47.87        35.34        30.61         3.16        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  TUBA3C MUTATED TUBA3C WILD-TYPE 
            2.01             0.10 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
          103.53           173.79 
  TUBA3C MUTATED TUBA3C WILD-TYPE 
           44.71            16.09 
[1] "2.0 - 103.5 (44.7)" "0.1 - 173.8 (16.1)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" "TUBA3C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
  "TUBA3C MUTATED" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE"   "TUBA3C MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" "TUBA3C WILD-TYPE" 
[1] "hr=" "5.8"
D169V2, continuous
D169V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBA3C MUTATED      1    6
  TUBA3C WILD-TYPE   46  125
        clus
vv       TUBA3C MUTATED TUBA3C WILD-TYPE
  FEMALE              1               46
  MALE                6              125
D169V4, continuous
D169V5, multiclass
                                                             clus
vv                                                            TUBA3C MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              7
                                                             clus
vv                                                            TUBA3C WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              165
D169V6, multiclass
    clus
vv   TUBA3C MUTATED TUBA3C WILD-TYPE
  T1              2               34
  T2              5              111
  T3              0               14
  T4              0               12
D169V7, multiclass
    clus
vv   TUBA3C MUTATED TUBA3C WILD-TYPE
  N0              6              111
  N1              0               39
  N2              0               17
  N3              1                4
D169V8, multiclass
    clus
vv   TUBA3C MUTATED TUBA3C WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
D169V9, multiclass
        clus
vv       TUBA3C MUTATED TUBA3C WILD-TYPE
  I                   6               91
  II                  0               38
  III+IV              1               40
D169V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TUBA3C MUTATED      0    7
  TUBA3C WILD-TYPE    4  167
     clus
vv    TUBA3C MUTATED TUBA3C WILD-TYPE
  NO               0                4
  YES              7              167
D169V11, continuous
D169V12, continuous
D169V13, multiclass
                                             clus
vv                                            TUBA3C MUTATED TUBA3C WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1                7
D169V14, continuous

Clustering(170) Variable = TMEM195 MUTATION ANALYSIS
D170V1, survival
                   sevent
clus2                0  1
  TMEM195 MUTATED    5  2
  TMEM195 WILD-TYPE 92 68
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                7               160 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                2                68 
$`TMEM195 MUTATED`
TCGA-18-3421 TCGA-22-5491 TCGA-37-5819 TCGA-39-5039 TCGA-66-2744 TCGA-66-2800 
       43.76        56.32         3.39        17.88         0.99        49.05 
TCGA-85-6561 
        0.79 

$`TMEM195 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
        0.79        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-85-6560 
       10.06        54.08         4.01         0.36 

  TMEM195 MUTATED TMEM195 WILD-TYPE 
             0.79              0.10 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
            56.32            173.79 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
            17.88             17.52 
[1] "0.8 - 56.3 (17.9)"  "0.1 - 173.8 (17.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
[1] "hr=" "1.4"
D170V2, continuous
D170V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      0    7
  TMEM195 WILD-TYPE   47  124
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  FEMALE               0                47
  MALE                 7               124
D170V4, continuous
[1] "Remove cluster labels:" "TMEM195 MUTATED"       
clus
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5492 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-60-2698 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
D170V5, multiclass
                                                             clus
vv                                                            TMEM195 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               7
                                                             clus
vv                                                            TMEM195 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               165
D170V6, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  T1               1                35
  T2               5               111
  T3               0                14
  T4               1                11
D170V7, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  N0               5               112
  N1               1                38
  N2               1                16
  N3               0                 5
D170V8, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
D170V9, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  I                    2                95
  II                   3                35
  III+IV               2                39
D170V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      0    7
  TMEM195 WILD-TYPE    4  167
     clus
vv    TMEM195 MUTATED TMEM195 WILD-TYPE
  NO                0                 4
  YES               7               167
D170V11, continuous
D170V12, continuous
D170V13, multiclass
                                             clus
vv                                            TMEM195 MUTATED TMEM195 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D170V14, continuous

Clustering(171) Variable = MAGEC2 MUTATION ANALYSIS
D171V1, survival
                  sevent
clus2               0  1
  MAGEC2 MUTATED    4  2
  MAGEC2 WILD-TYPE 93 68
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               6              161 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               2               68 
$`MAGEC2 MUTATED`
TCGA-22-5472 TCGA-33-4566 TCGA-43-2578 TCGA-66-2734 TCGA-66-2785 TCGA-66-2787 
       64.90       173.79        18.08        43.10         1.94        40.01 

$`MAGEC2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       35.64         0.79        17.88        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       11.77        16.96        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
            1.94             0.10 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
          173.79           141.34 
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
          41.555           16.600 
[1] "1.9 - 173.8 (41.6)" "0.1 - 141.3 (16.6)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE"   "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MAGEC2 MUTATED" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
[1] "hr=" "4.7"
D171V2, continuous
D171V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      2    5
  MAGEC2 WILD-TYPE   45  126
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  FEMALE              2               45
  MALE                5              126
D171V4, continuous
[1] "Remove cluster labels:" "MAGEC2 MUTATED"        
clus
  MAGEC2 MUTATED MAGEC2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5473       TCGA-22-5474 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" "MAGEC2 WILD-TYPE" 
D171V5, multiclass
                                                             clus
vv                                                            MAGEC2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              7
                                                             clus
vv                                                            MAGEC2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              165
D171V6, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  T1              2               34
  T2              5              111
  T3              0               14
  T4              0               12
D171V7, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  N0              7              110
  N1              0               39
  N2              0               17
  N3              0                5
D171V8, multiclass
    clus
vv   MAGEC2 MUTATED MAGEC2 WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
D171V9, multiclass
        clus
vv       MAGEC2 MUTATED MAGEC2 WILD-TYPE
  I                   6               91
  II                  1               37
  III+IV              0               41
D171V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEC2 MUTATED      0    7
  MAGEC2 WILD-TYPE    4  167
     clus
vv    MAGEC2 MUTATED MAGEC2 WILD-TYPE
  NO               0                4
  YES              7              167
D171V11, continuous
D171V12, continuous
D171V13, multiclass
                                             clus
vv                                            MAGEC2 MUTATED MAGEC2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D171V14, continuous

Clustering(172) Variable = MRGPRX1 MUTATION ANALYSIS
D172V1, survival
                   sevent
clus2                0  1
  MRGPRX1 MUTATED    3  3
  MRGPRX1 WILD-TYPE 94 67
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
                6               161 
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
                3                67 
$`MRGPRX1 MUTATED`
TCGA-22-1012 TCGA-22-5480 TCGA-39-5024 TCGA-66-2734 TCGA-66-2742 TCGA-66-2773 
       14.10        71.34        70.03        43.10        21.07         3.02 

$`MRGPRX1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        1.74        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 
       63.52        14.60        44.22         0.79        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 
        3.39        74.07        44.71        68.58        55.17        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       11.77        16.96         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        23.01        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
             3.02              0.10 
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
            71.34            173.79 
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
           32.085            16.960 
[1] "3.0 - 71.3 (32.1)"  "0.1 - 173.8 (17.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "MRGPRX1 MUTATED" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE"   "MRGPRX1 MUTATED" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
[1] "hr=" "1.3"
D172V2, continuous
D172V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MRGPRX1 MUTATED      4    2
  MRGPRX1 WILD-TYPE   43  129
        clus
vv       MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  FEMALE               4                43
  MALE                 2               129
D172V4, continuous
[1] "Remove cluster labels:" "MRGPRX1 MUTATED"       
clus
  MRGPRX1 MUTATED MRGPRX1 WILD-TYPE 
                1                35 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5482 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" "MRGPRX1 WILD-TYPE" 
D172V5, multiclass
                                                             clus
vv                                                            MRGPRX1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               6
                                                             clus
vv                                                            MRGPRX1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               166
D172V6, multiclass
    clus
vv   MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  T1               1                35
  T2               5               111
  T3               0                14
  T4               0                12
D172V7, multiclass
    clus
vv   MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  N0               4               113
  N1               1                38
  N2               1                16
  N3               0                 5
D172V8, multiclass
    clus
vv   MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  M0               5               160
  M1               1                 2
  MX               0                 6
D172V9, multiclass
        clus
vv       MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  I                    4                93
  II                   0                38
  III+IV               2                39
D172V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  MRGPRX1 MUTATED      0    6
  MRGPRX1 WILD-TYPE    4  168
     clus
vv    MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  NO                0                 4
  YES               6               168
D172V11, continuous
D172V12, continuous
D172V13, multiclass
                                             clus
vv                                            MRGPRX1 MUTATED MRGPRX1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                 8
D172V14, continuous

Clustering(173) Variable = OR4S2 MUTATION ANALYSIS
D173V1, survival
                 sevent
clus2              0  1
  OR4S2 MUTATED    4  7
  OR4S2 WILD-TYPE 93 63
  OR4S2 MUTATED OR4S2 WILD-TYPE 
             11             156 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
              7              63 
$`OR4S2 MUTATED`
TCGA-18-3416 TCGA-22-4599 TCGA-22-5477 TCGA-22-5478 TCGA-33-4538 TCGA-34-5231 
       28.34        38.17        44.22         0.79        97.94        50.24 
TCGA-39-5022 TCGA-43-6771 TCGA-60-2723 TCGA-66-2785 TCGA-66-2791 
       55.17         5.42        22.78         1.94         5.03 

$`OR4S2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       14.60        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       16.60        82.98       114.05        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 
       18.84         8.48         7.00         6.02         2.79         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        24.10         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 
       24.95        25.97        40.01        22.98         4.04        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  OR4S2 MUTATED OR4S2 WILD-TYPE 
           0.79            0.10 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
          97.94          173.79 
  OR4S2 MUTATED OR4S2 WILD-TYPE 
          28.34           16.78 
[1] "0.8 - 97.9 (28.3)"  "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "OR4S2 MUTATED" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" "OR4S2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE"   "OR4S2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" "OR4S2 WILD-TYPE" 
[1] "hr=" "1.3"
D173V2, continuous
D173V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4S2 MUTATED      2    9
  OR4S2 WILD-TYPE   45  122
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  FEMALE             2              45
  MALE               9             122
D173V4, continuous
D173V5, multiclass
                                                             clus
vv                                                            OR4S2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            OR4S2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
D173V6, multiclass
    clus
vv   OR4S2 MUTATED OR4S2 WILD-TYPE
  T1             2              34
  T2             9             107
  T3             0              14
  T4             0              12
D173V7, multiclass
    clus
vv   OR4S2 MUTATED OR4S2 WILD-TYPE
  N0             8             109
  N1             1              38
  N2             1              16
  N3             1               4
D173V8, multiclass
    clus
vv   OR4S2 MUTATED OR4S2 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             1               5
D173V9, multiclass
        clus
vv       OR4S2 MUTATED OR4S2 WILD-TYPE
  I                  8              89
  II                 1              37
  III+IV             2              39
D173V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4S2 MUTATED      0   11
  OR4S2 WILD-TYPE    4  163
     clus
vv    OR4S2 MUTATED OR4S2 WILD-TYPE
  NO              0               4
  YES            11             163
D173V11, continuous
D173V12, continuous
D173V13, multiclass
                                             clus
vv                                            OR4S2 MUTATED OR4S2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D173V14, continuous

Clustering(174) Variable = SPATA8 MUTATION ANALYSIS
D174V1, survival
                  sevent
clus2               0  1
  SPATA8 MUTATED    2  2
  SPATA8 WILD-TYPE 95 68
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               4              163 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2               68 
$`SPATA8 MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-21-5782 TCGA-66-2759 
       79.46         4.80        31.63        25.02 

$`SPATA8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99         0.99        20.98         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  SPATA8 MUTATED SPATA8 WILD-TYPE 
             4.8              0.1 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
           79.46           173.79 
  SPATA8 MUTATED SPATA8 WILD-TYPE 
          28.325           16.960 
[1] "4.8 - 79.5 (28.3)"  "0.1 - 173.8 (17.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPATA8 MUTATED" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE"   "SPATA8 MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
[1] "hr=" "1.1"
D174V2, continuous
D174V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      1    3
  SPATA8 WILD-TYPE   46  128
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  FEMALE              1               46
  MALE                3              128
D174V4, continuous
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3414       TCGA-18-3419 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-21-5787       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4613 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5472       TCGA-22-5473       TCGA-22-5474       TCGA-22-5477 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
D174V5, multiclass
                                                             clus
vv                                                            SPATA8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              3
                                                             clus
vv                                                            SPATA8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              169
D174V6, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  T1              1               35
  T2              2              114
  T3              1               13
  T4              0               12
D174V7, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  N0              3              114
  N1              0               39
  N2              1               16
  N3              0                5
D174V8, multiclass
    clus
vv   SPATA8 MUTATED SPATA8 WILD-TYPE
  M0              4              161
  M1              0                3
  MX              0                6
D174V9, multiclass
        clus
vv       SPATA8 MUTATED SPATA8 WILD-TYPE
  I                   1               96
  II                  0               38
  III+IV              2               39
D174V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPATA8 MUTATED      0    4
  SPATA8 WILD-TYPE    4  170
     clus
vv    SPATA8 MUTATED SPATA8 WILD-TYPE
  NO               0                4
  YES              4              170
D174V11, continuous
D174V12, continuous
D174V13, multiclass
                                             clus
vv                                            SPATA8 MUTATED SPATA8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D174V14, continuous
[1] "Remove cluster labels:" "SPATA8 MUTATED"        
clus
  SPATA8 MUTATED SPATA8 WILD-TYPE 
               2              103 
      TCGA-18-3406       TCGA-18-3417       TCGA-21-1078       TCGA-21-5786 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-21-5787       TCGA-22-0944       TCGA-22-1002       TCGA-22-1011 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-1012       TCGA-22-1016       TCGA-22-4591       TCGA-22-4593 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-4607       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5480       TCGA-22-5482       TCGA-22-5492 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-33-4533       TCGA-33-4547       TCGA-33-4582       TCGA-33-4583 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-33-4586       TCGA-34-5240       TCGA-34-5241       TCGA-37-4133 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-37-4135       TCGA-37-5819       TCGA-39-5021       TCGA-39-5022 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5024       TCGA-39-5027       TCGA-39-5028       TCGA-39-5029 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5030       TCGA-39-5031       TCGA-39-5035       TCGA-39-5036 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-39-5037       TCGA-39-5039       TCGA-43-2578       TCGA-43-3394 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-43-3920       TCGA-43-6143       TCGA-43-6647       TCGA-43-6770 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-43-6771       TCGA-56-1622       TCGA-56-5898       TCGA-56-6545 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2707       TCGA-60-2708       TCGA-60-2709 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2710       TCGA-60-2711       TCGA-60-2712       TCGA-60-2713 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2715       TCGA-60-2719       TCGA-60-2720       TCGA-60-2721 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-60-2723       TCGA-60-2724       TCGA-60-2725       TCGA-60-2726 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-63-6202       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2756 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2757       TCGA-66-2758       TCGA-66-2763       TCGA-66-2765 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2766       TCGA-66-2767       TCGA-66-2770       TCGA-66-2771 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2786 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" "SPATA8 WILD-TYPE" 

Clustering(175) Variable = PDZRN4 MUTATION ANALYSIS
D175V1, survival
                  sevent
clus2               0  1
  PDZRN4 MUTATED    6  2
  PDZRN4 WILD-TYPE 91 68
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               8              159 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
               2               68 
$`PDZRN4 MUTATED`
TCGA-18-3409 TCGA-22-4613 TCGA-22-5473 TCGA-34-5231 TCGA-39-5037 TCGA-56-6546 
       79.46        11.77        63.52        50.24         0.79         1.02 
TCGA-66-2757 TCGA-85-6560 
        0.99         0.36 

$`PDZRN4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       34.75        13.12        19.30        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2698 
        0.39         2.07        28.93         0.10         2.04        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
            0.36             0.10 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           79.46           173.79 
  PDZRN4 MUTATED PDZRN4 WILD-TYPE 
           6.395           18.080 
[1] "0.4 - 79.5 (6.4)"   "0.1 - 173.8 (18.1)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" "PDZRN4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PDZRN4 WILD-TYPE"   "PDZRN4 MUTATED" "PDZRN4 WILD-TYPE" 
[1] "hr=" "1.6"
D175V2, continuous
D175V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      2    9
  PDZRN4 WILD-TYPE   45  122
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  FEMALE              2               45
  MALE                9              122
D175V4, continuous
D175V5, multiclass
                                                             clus
vv                                                            PDZRN4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             10
                                                             clus
vv                                                            PDZRN4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              162
D175V6, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  T1              5               31
  T2              4              112
  T3              2               12
  T4              0               12
D175V7, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  N0              7              110
  N1              4               35
  N2              0               17
  N3              0                5
D175V8, multiclass
    clus
vv   PDZRN4 MUTATED PDZRN4 WILD-TYPE
  M0             10              155
  M1              0                3
  MX              1                5
D175V9, multiclass
        clus
vv       PDZRN4 MUTATED PDZRN4 WILD-TYPE
  I                   5               92
  II                  2               36
  III+IV              2               39
D175V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PDZRN4 MUTATED      0   11
  PDZRN4 WILD-TYPE    4  163
     clus
vv    PDZRN4 MUTATED PDZRN4 WILD-TYPE
  NO               0                4
  YES             11              163
D175V11, continuous
D175V12, continuous
D175V13, multiclass
                                             clus
vv                                            PDZRN4 MUTATED PDZRN4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      2                6
D175V14, continuous

Clustering(176) Variable = OR2M3 MUTATION ANALYSIS
D176V1, survival
                 sevent
clus2              0  1
  OR2M3 MUTATED    4  3
  OR2M3 WILD-TYPE 93 67
  OR2M3 MUTATED OR2M3 WILD-TYPE 
              7             160 
  OR2M3 MUTATED OR2M3 WILD-TYPE 
              3              67 
$`OR2M3 MUTATED`
TCGA-18-3409 TCGA-18-4083 TCGA-34-5231 TCGA-34-5236 TCGA-39-5024 TCGA-51-4079 
       79.46         6.15        50.24         9.04        70.03         0.39 
TCGA-66-2795 
        4.01 

$`OR2M3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
        2.63        61.61        32.84        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08        49.05         0.36         0.79 

  OR2M3 MUTATED OR2M3 WILD-TYPE 
           0.39            0.10 
  OR2M3 MUTATED OR2M3 WILD-TYPE 
          79.46          173.79 
  OR2M3 MUTATED OR2M3 WILD-TYPE 
           9.04           17.98 
[1] "0.4 - 79.5 (9.0)"   "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE"   "OR2M3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
  "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE"   "OR2M3 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE"   "OR2M3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
  "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE"   "OR2M3 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE"   "OR2M3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
  "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE"   "OR2M3 MUTATED" "OR2M3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE"   "OR2M3 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
[1] "hr=" "1.1"
D176V2, continuous
D176V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M3 MUTATED      3    5
  OR2M3 WILD-TYPE   44  126
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D176V4, continuous
D176V5, multiclass
                                                             clus
vv                                                            OR2M3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR2M3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
D176V6, multiclass
    clus
vv   OR2M3 MUTATED OR2M3 WILD-TYPE
  T1             3              33
  T2             3             113
  T3             1              13
  T4             1              11
D176V7, multiclass
    clus
vv   OR2M3 MUTATED OR2M3 WILD-TYPE
  N0             5             112
  N1             2              37
  N2             1              16
  N3             0               5
D176V8, multiclass
    clus
vv   OR2M3 MUTATED OR2M3 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
D176V9, multiclass
        clus
vv       OR2M3 MUTATED OR2M3 WILD-TYPE
  I                  3              94
  II                 2              36
  III+IV             2              39
D176V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M3 MUTATED      0    8
  OR2M3 WILD-TYPE    4  166
     clus
vv    OR2M3 MUTATED OR2M3 WILD-TYPE
  NO              0               4
  YES             8             166
D176V11, continuous
D176V12, continuous
D176V13, multiclass
                                             clus
vv                                            OR2M3 MUTATED OR2M3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1               7
D176V14, continuous
[1] "Remove cluster labels:" "OR2M3 MUTATED"         
clus
  OR2M3 MUTATED OR2M3 WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5782 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-21-5786      TCGA-21-5787      TCGA-22-0944      TCGA-22-1002 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-1012      TCGA-22-1016      TCGA-22-4591 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-4613      TCGA-22-5472 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5480      TCGA-22-5482 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4582 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-34-5240      TCGA-34-5241 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-39-5021 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-39-5037      TCGA-39-5039      TCGA-43-2578      TCGA-43-3394 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-43-3920      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-43-6771      TCGA-56-1622      TCGA-56-5898      TCGA-56-6545 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2707      TCGA-60-2708      TCGA-60-2709 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2713 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2715      TCGA-60-2719      TCGA-60-2720      TCGA-60-2721 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-60-2723      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" "OR2M3 WILD-TYPE" 

Clustering(177) Variable = SFRS1 MUTATION ANALYSIS
D177V1, survival
                 sevent
clus2              0  1
  SFRS1 MUTATED    3  2
  SFRS1 WILD-TYPE 94 68
  SFRS1 MUTATED SFRS1 WILD-TYPE 
              5             162 
  SFRS1 MUTATED SFRS1 WILD-TYPE 
              2              68 
$`SFRS1 MUTATED`
TCGA-18-3408 TCGA-18-3414 TCGA-34-2608 TCGA-66-2754 TCGA-66-2795 
       81.07        13.02        32.84         2.01         4.01 

$`SFRS1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        79.46         4.80        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 
       11.77        16.96        43.10        21.07         0.99         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       30.02        10.06        54.08        49.05         0.36         0.79 

  SFRS1 MUTATED SFRS1 WILD-TYPE 
           2.01            0.10 
  SFRS1 MUTATED SFRS1 WILD-TYPE 
          81.07          173.79 
  SFRS1 MUTATED SFRS1 WILD-TYPE 
          13.02           17.98 
[1] "2.0 - 81.1 (13.0)"  "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" "SFRS1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "SFRS1 MUTATED" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" "SFRS1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" "SFRS1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "SFRS1 MUTATED" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" "SFRS1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" "SFRS1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "SFRS1 MUTATED" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" "SFRS1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE"   "SFRS1 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
[1] "hr=" "1.1"
D177V2, continuous
D177V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SFRS1 MUTATED      1    4
  SFRS1 WILD-TYPE   46  127
        clus
vv       SFRS1 MUTATED SFRS1 WILD-TYPE
  FEMALE             1              46
  MALE               4             127
D177V4, continuous
[1] "Remove cluster labels:" "SFRS1 MUTATED"         
clus
  SFRS1 MUTATED SFRS1 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3419 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
D177V5, multiclass
                                                             clus
vv                                                            SFRS1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             5
                                                             clus
vv                                                            SFRS1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             167
D177V6, multiclass
    clus
vv   SFRS1 MUTATED SFRS1 WILD-TYPE
  T1             0              36
  T2             3             113
  T3             0              14
  T4             2              10
D177V7, multiclass
    clus
vv   SFRS1 MUTATED SFRS1 WILD-TYPE
  N0             2             115
  N1             2              37
  N2             1              16
  N3             0               5
D177V8, multiclass
    clus
vv   SFRS1 MUTATED SFRS1 WILD-TYPE
  M0             4             161
  M1             1               2
  MX             0               6
D177V9, multiclass
        clus
vv       SFRS1 MUTATED SFRS1 WILD-TYPE
  I                  2              95
  II                 0              38
  III+IV             3              38
D177V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SFRS1 MUTATED      0    5
  SFRS1 WILD-TYPE    4  169
     clus
vv    SFRS1 MUTATED SFRS1 WILD-TYPE
  NO              0               4
  YES             5             169
D177V11, continuous
D177V12, continuous
D177V13, multiclass
                                             clus
vv                                            SFRS1 MUTATED SFRS1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D177V14, continuous
[1] "Remove cluster labels:" "SFRS1 MUTATED"         
clus
  SFRS1 MUTATED SFRS1 WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5782 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-21-5786      TCGA-21-5787      TCGA-22-0944      TCGA-22-1002 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-1012      TCGA-22-1016      TCGA-22-4591 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-4613      TCGA-22-5472 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5480      TCGA-22-5482 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4582 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-34-5240      TCGA-34-5241 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-39-5021 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-6143      TCGA-43-6647 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-43-6770      TCGA-43-6771      TCGA-56-1622      TCGA-56-5898 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-56-6545      TCGA-56-6546      TCGA-60-2707      TCGA-60-2708 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2723      TCGA-60-2724      TCGA-60-2725 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-60-2726      TCGA-63-6202      TCGA-66-2727      TCGA-66-2734 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2755      TCGA-66-2756 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" "SFRS1 WILD-TYPE" 

Clustering(178) Variable = MCHR2 MUTATION ANALYSIS
D178V1, survival
                 sevent
clus2              0  1
  MCHR2 MUTATED    4  2
  MCHR2 WILD-TYPE 93 68
  MCHR2 MUTATED MCHR2 WILD-TYPE 
              6             161 
  MCHR2 MUTATED MCHR2 WILD-TYPE 
              2              68 
$`MCHR2 MUTATED`
TCGA-18-3406 TCGA-37-3789 TCGA-39-5037 TCGA-60-2725 TCGA-66-2766 TCGA-66-2791 
       12.16         0.43         0.79        23.64         1.02         5.03 

$`MCHR2 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
        4.47        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       35.64        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 
        3.16        26.07        24.10        22.78         1.22        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01        22.98         4.04        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  MCHR2 MUTATED MCHR2 WILD-TYPE 
           0.43            0.10 
  MCHR2 MUTATED MCHR2 WILD-TYPE 
          23.64          173.79 
  MCHR2 MUTATED MCHR2 WILD-TYPE 
          3.025          18.840 
[1] "0.4 - 23.6 (3.0)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"MCHR2 WILD-TYPE"   "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE"   "MCHR2 MUTATED" "MCHR2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE"   "MCHR2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"MCHR2 WILD-TYPE"   "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE"   "MCHR2 MUTATED" "MCHR2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE"   "MCHR2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"MCHR2 WILD-TYPE"   "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "MCHR2 MUTATED" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE"   "MCHR2 MUTATED" "MCHR2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE"   "MCHR2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
[1] "hr=" "2.4"
D178V2, continuous
D178V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MCHR2 MUTATED      0    6
  MCHR2 WILD-TYPE   47  125
        clus
vv       MCHR2 MUTATED MCHR2 WILD-TYPE
  FEMALE             0              47
  MALE               6             125
D178V4, continuous
[1] "Remove cluster labels:" "MCHR2 MUTATED"         
clus
  MCHR2 MUTATED MCHR2 WILD-TYPE 
              2              34 
     TCGA-18-3407      TCGA-18-3410      TCGA-18-3414      TCGA-18-3419 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2726 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"MCHR2 WILD-TYPE" "MCHR2 WILD-TYPE" 
D178V5, multiclass
                                                             clus
vv                                                            MCHR2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            MCHR2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D178V6, multiclass
    clus
vv   MCHR2 MUTATED MCHR2 WILD-TYPE
  T1             2              34
  T2             4             112
  T3             0              14
  T4             0              12
D178V7, multiclass
    clus
vv   MCHR2 MUTATED MCHR2 WILD-TYPE
  N0             3             114
  N1             1              38
  N2             1              16
  N3             1               4
D178V8, multiclass
    clus
vv   MCHR2 MUTATED MCHR2 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
D178V9, multiclass
        clus
vv       MCHR2 MUTATED MCHR2 WILD-TYPE
  I                  3              94
  II                 1              37
  III+IV             2              39
D178V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  MCHR2 MUTATED      0    6
  MCHR2 WILD-TYPE    4  168
     clus
vv    MCHR2 MUTATED MCHR2 WILD-TYPE
  NO              0               4
  YES             6             168
D178V11, continuous
D178V12, continuous
D178V13, multiclass
                                             clus
vv                                            MCHR2 MUTATED MCHR2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D178V14, continuous

Clustering(179) Variable = PSG2 MUTATION ANALYSIS
D179V1, survival
                sevent
clus2             0  1
  PSG2 MUTATED    4  2
  PSG2 WILD-TYPE 93 68
  PSG2 MUTATED PSG2 WILD-TYPE 
             6            161 
  PSG2 MUTATED PSG2 WILD-TYPE 
             2             68 
$`PSG2 MUTATED`
TCGA-18-3407 TCGA-21-1076 TCGA-33-4566 TCGA-46-6026 TCGA-60-2722 TCGA-66-2767 
        4.47        60.89       173.79         0.59        24.10         2.01 

$`PSG2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       46.88        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  PSG2 MUTATED PSG2 WILD-TYPE 
          0.59           0.10 
  PSG2 MUTATED PSG2 WILD-TYPE 
        173.79         141.34 
  PSG2 MUTATED PSG2 WILD-TYPE 
        14.285         17.880 
[1] "0.6 - 173.8 (14.3)" "0.1 - 141.3 (17.9)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE"   "PSG2 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE"   "PSG2 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG2 WILD-TYPE"   "PSG2 MUTATED" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE"   "PSG2 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
[1] "hr=" "3.1"
D179V2, continuous
D179V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG2 MUTATED      1    5
  PSG2 WILD-TYPE   46  126
        clus
vv       PSG2 MUTATED PSG2 WILD-TYPE
  FEMALE            1             46
  MALE              5            126
D179V4, continuous
[1] "Remove cluster labels:" "PSG2 MUTATED"          
clus
  PSG2 MUTATED PSG2 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3410     TCGA-18-3414     TCGA-18-3419 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5787     TCGA-22-4591     TCGA-22-4593 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-4595     TCGA-22-4599     TCGA-22-4601     TCGA-22-4604 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
D179V5, multiclass
                                                             clus
vv                                                            PSG2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            6
                                                             clus
vv                                                            PSG2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            166
D179V6, multiclass
    clus
vv   PSG2 MUTATED PSG2 WILD-TYPE
  T1            0             36
  T2            6            110
  T3            0             14
  T4            0             12
D179V7, multiclass
    clus
vv   PSG2 MUTATED PSG2 WILD-TYPE
  N0            3            114
  N1            2             37
  N2            0             17
  N3            1              4
D179V8, multiclass
    clus
vv   PSG2 MUTATED PSG2 WILD-TYPE
  M0            6            159
  M1            0              3
  MX            0              6
D179V9, multiclass
        clus
vv       PSG2 MUTATED PSG2 WILD-TYPE
  I                 3             94
  II                2             36
  III+IV            1             40
D179V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG2 MUTATED      1    5
  PSG2 WILD-TYPE    3  169
     clus
vv    PSG2 MUTATED PSG2 WILD-TYPE
  NO             1              3
  YES            5            169
D179V11, continuous
D179V12, continuous
D179V13, multiclass
                                             clus
vv                                            PSG2 MUTATED PSG2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D179V14, continuous
[1] "Remove cluster labels:" "PSG2 MUTATED"          
clus
  PSG2 MUTATED PSG2 WILD-TYPE 
             1            104 
    TCGA-18-3406     TCGA-18-3417     TCGA-21-1078     TCGA-21-5782 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-21-5786     TCGA-21-5787     TCGA-22-0944     TCGA-22-1002 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-1011     TCGA-22-1012     TCGA-22-1016     TCGA-22-4591 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4607     TCGA-22-4613     TCGA-22-5472 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5473     TCGA-22-5474     TCGA-22-5480     TCGA-22-5482 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4533     TCGA-33-4547     TCGA-33-4582 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-33-4583     TCGA-33-4586     TCGA-34-5240     TCGA-34-5241 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-39-5021 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-6143     TCGA-43-6647 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-43-6770     TCGA-43-6771     TCGA-56-1622     TCGA-56-5898 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-56-6545     TCGA-56-6546     TCGA-60-2707     TCGA-60-2708 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2723     TCGA-60-2724     TCGA-60-2725 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-60-2726     TCGA-63-6202     TCGA-66-2727     TCGA-66-2734 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2770 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2771     TCGA-66-2773     TCGA-66-2777     TCGA-66-2778 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2780     TCGA-66-2781     TCGA-66-2782     TCGA-66-2783 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2786     TCGA-66-2787     TCGA-66-2788     TCGA-66-2789 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2791     TCGA-66-2792     TCGA-66-2793     TCGA-66-2794 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 
    TCGA-66-2795     TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" "PSG2 WILD-TYPE" 

Clustering(180) Variable = ZSCAN4 MUTATION ANALYSIS
D180V1, survival
                  sevent
clus2               0  1
  ZSCAN4 MUTATED    5  3
  ZSCAN4 WILD-TYPE 92 67
  ZSCAN4 MUTATED ZSCAN4 WILD-TYPE 
               8              159 
  ZSCAN4 MUTATED ZSCAN4 WILD-TYPE 
               3               67 
$`ZSCAN4 MUTATED`
TCGA-18-3416 TCGA-22-5471 TCGA-33-6737 TCGA-34-5231 TCGA-60-2698 TCGA-66-2756 
       28.34        31.69        19.76        50.24        10.22         0.99 
TCGA-66-2787 TCGA-66-2791 
       40.01         5.03 

$`ZSCAN4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 
       43.10       173.79       103.53       141.34        14.07         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         4.04        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  ZSCAN4 MUTATED ZSCAN4 WILD-TYPE 
            0.99             0.10 
  ZSCAN4 MUTATED ZSCAN4 WILD-TYPE 
           50.24           173.79 
  ZSCAN4 MUTATED ZSCAN4 WILD-TYPE 
           24.05            16.96 
[1] "1.0 - 50.2 (24.1)"  "0.1 - 173.8 (17.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "ZSCAN4 MUTATED" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE"   "ZSCAN4 MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
[1] "hr=" "1"  
D180V2, continuous
D180V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSCAN4 MUTATED      0    8
  ZSCAN4 WILD-TYPE   47  123
        clus
vv       ZSCAN4 MUTATED ZSCAN4 WILD-TYPE
  FEMALE              0               47
  MALE                8              123
D180V4, continuous
[1] "Remove cluster labels:" "ZSCAN4 MUTATED"        
clus
  ZSCAN4 MUTATED ZSCAN4 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-22-5492       TCGA-34-5234       TCGA-37-4133       TCGA-37-4135 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-37-5819       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" "ZSCAN4 WILD-TYPE" 
D180V5, multiclass
                                                             clus
vv                                                            ZSCAN4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            ZSCAN4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
D180V6, multiclass
    clus
vv   ZSCAN4 MUTATED ZSCAN4 WILD-TYPE
  T1              2               34
  T2              5              111
  T3              0               14
  T4              1               11
D180V7, multiclass
    clus
vv   ZSCAN4 MUTATED ZSCAN4 WILD-TYPE
  N0              4              113
  N1              2               37
  N2              1               16
  N3              1                4
D180V8, multiclass
    clus
vv   ZSCAN4 MUTATED ZSCAN4 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
D180V9, multiclass
        clus
vv       ZSCAN4 MUTATED ZSCAN4 WILD-TYPE
  I                   3               94
  II                  2               36
  III+IV              3               38
D180V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZSCAN4 MUTATED      1    7
  ZSCAN4 WILD-TYPE    3  167
     clus
vv    ZSCAN4 MUTATED ZSCAN4 WILD-TYPE
  NO               1                3
  YES              7              167
D180V11, continuous
D180V12, continuous
D180V13, multiclass
                                             clus
vv                                            ZSCAN4 MUTATED ZSCAN4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1                7
D180V14, continuous

Clustering(181) Variable = COX7B2 MUTATION ANALYSIS
D181V1, survival
                  sevent
clus2               0  1
  COX7B2 MUTATED    0  1
  COX7B2 WILD-TYPE 97 69
  COX7B2 MUTATED COX7B2 WILD-TYPE 
               1              166 
  COX7B2 MUTATED COX7B2 WILD-TYPE 
               1               69 
$`COX7B2 MUTATED`
TCGA-18-3414 
       13.02 

$`COX7B2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  COX7B2 MUTATED COX7B2 WILD-TYPE 
           13.02             0.10 
  COX7B2 MUTATED COX7B2 WILD-TYPE 
           13.02           173.79 
  COX7B2 MUTATED COX7B2 WILD-TYPE 
           13.02            17.98 
[1] "13.0 - 13.0 (13.0)" "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE"   "COX7B2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE"   "COX7B2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE"   "COX7B2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
[1] "Remove cluster labels:" "COX7B2 MUTATED"        
clus
  COX7B2 MUTATED COX7B2 WILD-TYPE 
               1              166 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3415 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3416       TCGA-18-3417       TCGA-18-3419       TCGA-18-3421 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-4083       TCGA-18-4086       TCGA-18-4721       TCGA-18-5592 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-5595       TCGA-21-1070       TCGA-21-1071       TCGA-21-1076 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-1077       TCGA-21-1078       TCGA-21-1081       TCGA-21-5782 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-5784       TCGA-21-5786       TCGA-21-5787       TCGA-22-0944 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-1002       TCGA-22-1011       TCGA-22-1012       TCGA-22-1016 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4591       TCGA-22-4593       TCGA-22-4595       TCGA-22-4599 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4601       TCGA-22-4604       TCGA-22-4607       TCGA-22-4613 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5471       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4532       TCGA-33-4533       TCGA-33-4538       TCGA-33-4547 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4566       TCGA-33-4582       TCGA-33-4583       TCGA-33-4586 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-6737       TCGA-34-2596       TCGA-34-2600       TCGA-34-2608 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5231       TCGA-34-5232       TCGA-34-5234       TCGA-34-5236 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5239       TCGA-34-5240       TCGA-34-5241       TCGA-34-5927 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5928       TCGA-34-5929       TCGA-37-3783       TCGA-37-3789 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-4141       TCGA-37-5819 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5016       TCGA-39-5019       TCGA-39-5021       TCGA-39-5022 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5024       TCGA-39-5027       TCGA-39-5028       TCGA-39-5029 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5030       TCGA-39-5031       TCGA-39-5035       TCGA-39-5036 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5037       TCGA-39-5039       TCGA-43-2578       TCGA-43-3394 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-3920       TCGA-43-5668       TCGA-43-6143       TCGA-43-6647 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-46-3768       TCGA-46-6025 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-46-6026       TCGA-51-4079       TCGA-51-4080       TCGA-51-4081 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-56-1622       TCGA-56-5897       TCGA-56-6545       TCGA-56-6546 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2707       TCGA-60-2708       TCGA-60-2709 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2710       TCGA-60-2711       TCGA-60-2712       TCGA-60-2713 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2715       TCGA-60-2719       TCGA-60-2720       TCGA-60-2721 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2722       TCGA-60-2723       TCGA-60-2724       TCGA-60-2725 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2726       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2756 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2757       TCGA-66-2758       TCGA-66-2759       TCGA-66-2763 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2765       TCGA-66-2766       TCGA-66-2767       TCGA-66-2768 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2770       TCGA-66-2771       TCGA-66-2773       TCGA-66-2777 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2778       TCGA-66-2780       TCGA-66-2781       TCGA-66-2782 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2783       TCGA-66-2785       TCGA-66-2786       TCGA-66-2787 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2788       TCGA-66-2789       TCGA-66-2791       TCGA-66-2792 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2793       TCGA-66-2794       TCGA-66-2795       TCGA-66-2800 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-85-6560       TCGA-85-6561 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
D181V2, continuous
[1] "Remove cluster labels:" "COX7B2 MUTATED"        
clus
  COX7B2 MUTATED COX7B2 WILD-TYPE 
               1              174 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3415 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-3416       TCGA-18-3417       TCGA-18-3419       TCGA-18-3421 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-4083       TCGA-18-4086       TCGA-18-4721       TCGA-18-5592 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-18-5595       TCGA-21-1070       TCGA-21-1071       TCGA-21-1076 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-1077       TCGA-21-1078       TCGA-21-1081       TCGA-21-5782 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-5784       TCGA-21-5786       TCGA-21-5787       TCGA-22-0944 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-1002       TCGA-22-1011       TCGA-22-1012       TCGA-22-1016 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4591       TCGA-22-4593       TCGA-22-4595       TCGA-22-4599 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4601       TCGA-22-4604       TCGA-22-4607       TCGA-22-4613 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5471       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4532       TCGA-33-4533       TCGA-33-4538       TCGA-33-4547 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4566       TCGA-33-4582       TCGA-33-4583       TCGA-33-4586 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-6737       TCGA-34-2596       TCGA-34-2600       TCGA-34-2608 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5231       TCGA-34-5232       TCGA-34-5234       TCGA-34-5236 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5239       TCGA-34-5240       TCGA-34-5241       TCGA-34-5927 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5928       TCGA-34-5929       TCGA-37-3783       TCGA-37-3789 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-4141       TCGA-37-5819 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5016       TCGA-39-5019       TCGA-39-5021       TCGA-39-5022 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5024       TCGA-39-5027       TCGA-39-5028       TCGA-39-5029 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5030       TCGA-39-5031       TCGA-39-5035       TCGA-39-5036 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5037       TCGA-39-5039       TCGA-43-2578       TCGA-43-3394 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-3920       TCGA-43-5668       TCGA-43-6143       TCGA-43-6647 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-46-3765       TCGA-46-3766 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-46-3767       TCGA-46-3768       TCGA-46-3769       TCGA-46-6025 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-46-6026       TCGA-51-4079       TCGA-51-4080       TCGA-51-4081 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-56-1622       TCGA-56-5897       TCGA-56-5898       TCGA-56-6545 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-70-6722       TCGA-70-6723       TCGA-85-6175 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-85-6560       TCGA-85-6561 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
D181V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COX7B2 MUTATED      0    3
  COX7B2 WILD-TYPE   47  128
        clus
vv       COX7B2 MUTATED COX7B2 WILD-TYPE
  FEMALE              0               47
  MALE                3              128
D181V4, continuous
[1] "Remove cluster labels:" "COX7B2 MUTATED"        
clus
  COX7B2 MUTATED COX7B2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3419 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5787       TCGA-22-4591       TCGA-22-4593 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
D181V5, multiclass
                                                             clus
vv                                                            COX7B2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              3
                                                             clus
vv                                                            COX7B2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              169
D181V6, multiclass
    clus
vv   COX7B2 MUTATED COX7B2 WILD-TYPE
  T1              0               36
  T2              2              114
  T3              0               14
  T4              1               11
D181V7, multiclass
    clus
vv   COX7B2 MUTATED COX7B2 WILD-TYPE
  N0              1              116
  N1              2               37
  N2              0               17
  N3              0                5
D181V8, multiclass
    clus
vv   COX7B2 MUTATED COX7B2 WILD-TYPE
  M0              2              163
  M1              1                2
  MX              0                6
D181V9, multiclass
        clus
vv       COX7B2 MUTATED COX7B2 WILD-TYPE
  I                   0               97
  II                  2               36
  III+IV              1               40
D181V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COX7B2 MUTATED      0    3
  COX7B2 WILD-TYPE    4  171
     clus
vv    COX7B2 MUTATED COX7B2 WILD-TYPE
  NO               0                4
  YES              3              171
D181V11, continuous
D181V12, continuous
D181V13, multiclass
                                             clus
vv                                            COX7B2 MUTATED COX7B2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D181V14, continuous
[1] "Remove cluster labels:" "COX7B2 MUTATED"        
clus
  COX7B2 MUTATED COX7B2 WILD-TYPE 
               1              104 
      TCGA-18-3406       TCGA-18-3417       TCGA-21-1078       TCGA-21-5782 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-21-5786       TCGA-21-5787       TCGA-22-0944       TCGA-22-1002 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-1011       TCGA-22-1012       TCGA-22-1016       TCGA-22-4591 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4607       TCGA-22-4613       TCGA-22-5472 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5473       TCGA-22-5474       TCGA-22-5480       TCGA-22-5482 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4533       TCGA-33-4547       TCGA-33-4582 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-33-4583       TCGA-33-4586       TCGA-34-5240       TCGA-34-5241 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-39-5021 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-6143       TCGA-43-6647 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-56-1622       TCGA-56-5898 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2707       TCGA-60-2708 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2723       TCGA-60-2724       TCGA-60-2725 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-60-2726       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2756 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2757       TCGA-66-2758       TCGA-66-2759       TCGA-66-2763 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2765       TCGA-66-2766       TCGA-66-2767       TCGA-66-2770 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2771       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2780       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" "COX7B2 WILD-TYPE" 

Clustering(182) Variable = HLA-A MUTATION ANALYSIS
D182V1, survival
                 sevent
clus2              0  1
  HLA-A MUTATED    4  2
  HLA-A WILD-TYPE 93 68
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             161 
  HLA-A MUTATED HLA-A WILD-TYPE 
              2              68 
$`HLA-A MUTATED`
TCGA-18-3419 TCGA-21-5782 TCGA-37-5819 TCGA-39-5024 TCGA-60-2698 TCGA-66-2786 
        1.61        31.63         3.39        70.03        10.22        25.97 

$`HLA-A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        55.17        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  HLA-A MUTATED HLA-A WILD-TYPE 
           1.61            0.10 
  HLA-A MUTATED HLA-A WILD-TYPE 
          70.03          173.79 
  HLA-A MUTATED HLA-A WILD-TYPE 
         18.095          17.880 
[1] "1.6 - 70.0 (18.1)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
[1] "hr=" "1.2"
D182V2, continuous
D182V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-A MUTATED      3    3
  HLA-A WILD-TYPE   44  128
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  FEMALE             3              44
  MALE               3             128
D182V4, continuous
D182V5, multiclass
                                                             clus
vv                                                            HLA-A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            HLA-A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
D182V6, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  T1             1              35
  T2             5             111
  T3             0              14
  T4             0              12
D182V7, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  N0             2             115
  N1             2              37
  N2             2              15
  N3             0               5
D182V8, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
D182V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  I                  2              95
  II                 2              36
  III+IV             2              39
D182V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-A MUTATED      0    6
  HLA-A WILD-TYPE    4  168
     clus
vv    HLA-A MUTATED HLA-A WILD-TYPE
  NO              0               4
  YES             6             168
D182V11, continuous
D182V12, continuous
D182V13, multiclass
                                             clus
vv                                            HLA-A MUTATED HLA-A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D182V14, continuous

Clustering(183) Variable = FRG2B MUTATION ANALYSIS
D183V1, survival
                 sevent
clus2              0  1
  FRG2B MUTATED    3  2
  FRG2B WILD-TYPE 94 68
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             162 
  FRG2B MUTATED FRG2B WILD-TYPE 
              2              68 
$`FRG2B MUTATED`
TCGA-18-3416 TCGA-21-5782 TCGA-33-4532 TCGA-34-2596 TCGA-43-6143 
       28.34        31.63        82.98         2.63         7.00 

$`FRG2B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 
      173.79       103.53       141.34        14.07        19.76        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 
       17.88        18.08        11.57        18.84         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  FRG2B MUTATED FRG2B WILD-TYPE 
           2.63            0.10 
  FRG2B MUTATED FRG2B WILD-TYPE 
          82.98          173.79 
  FRG2B MUTATED FRG2B WILD-TYPE 
          28.34           17.42 
[1] "2.6 - 83.0 (28.3)"  "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
[1] "hr=" "1.2"
D183V2, continuous
D183V3, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FRG2B MUTATED      1    4
  FRG2B WILD-TYPE   46  127
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  FEMALE             1              46
  MALE               4             127
D183V4, continuous
[1] "Remove cluster labels:" "FRG2B MUTATED"         
clus
  FRG2B MUTATED FRG2B WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
D183V5, multiclass
                                                             clus
vv                                                            FRG2B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             4
                                                             clus
vv                                                            FRG2B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             168
D183V6, multiclass
    clus
vv   FRG2B MUTATED FRG2B WILD-TYPE
  T1             0              36
  T2             5             111
  T3             0              14
  T4             0              12
D183V7, multiclass
    clus
vv   FRG2B MUTATED FRG2B WILD-TYPE
  N0             3             114
  N1             2              37
  N2             0              17
  N3             0               5
D183V8, multiclass
    clus
vv   FRG2B MUTATED FRG2B WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
D183V9, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  I                  3              94
  II                 2              36
  III+IV             0              41
D183V10, binary
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FRG2B MUTATED      0    5
  FRG2B WILD-TYPE    4  169
     clus
vv    FRG2B MUTATED FRG2B WILD-TYPE
  NO              0               4
  YES             5             169
D183V11, continuous
D183V12, continuous
D183V13, multiclass
                                             clus
vv                                            FRG2B MUTATED FRG2B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D183V14, continuous
[1] "Remove cluster labels:" "FRG2B MUTATED"         
clus
  FRG2B MUTATED FRG2B WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5787      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4593 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4607      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5480      TCGA-22-5482      TCGA-22-5492 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-34-5240      TCGA-34-5241      TCGA-37-4133 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5021      TCGA-39-5022 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5037      TCGA-39-5039      TCGA-43-2578      TCGA-43-3394 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3920      TCGA-43-6647      TCGA-43-6770      TCGA-43-6771 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-1622      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2715 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2719      TCGA-60-2720      TCGA-60-2721      TCGA-60-2723 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-6202 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 

Clustering(184) Variable = FAM71B MUTATION ANALYSIS
D184V1, survival
                  sevent
clus2               0  1
  FAM71B MUTATED    3  4
  FAM71B WILD-TYPE 94 66
  FAM71B MUTATED FAM71B WILD-TYPE 
               7              160 
  FAM71B MUTATED FAM71B WILD-TYPE 
               4               66 
$`FAM71B MUTATED`
TCGA-22-4604 TCGA-33-4566 TCGA-34-5239 TCGA-34-5929 TCGA-37-5819 TCGA-43-6771 
       13.12       173.79        10.82         4.96         3.39         5.42 
TCGA-66-2783 
       24.95 

$`FAM71B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 
        9.04         7.73        14.07        22.95         5.52         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         6.81         0.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.79         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  FAM71B MUTATED FAM71B WILD-TYPE 
            3.39             0.10 
  FAM71B MUTATED FAM71B WILD-TYPE 
          173.79           141.34 
  FAM71B MUTATED FAM71B WILD-TYPE 
           10.82            18.46 
[1] "3.4 - 173.8 (10.8)" "0.1 - 141.3 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"FAM71B WILD-TYPE"   "FAM71B MUTATED" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
[1] "hr=" "1.1"
D184V2, continuous
D184V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM71B MUTATED      1    7
  FAM71B WILD-TYPE   46  124
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  FEMALE              1               46
  MALE                7              124
D184V4, continuous
[1] "Remove cluster labels:" "FAM71B MUTATED"        
clus
  FAM71B MUTATED FAM71B WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-60-2698 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"FAM71B WILD-TYPE" "FAM71B WILD-TYPE" 
D184V5, multiclass
                                                             clus
vv                                                            FAM71B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            FAM71B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
D184V6, multiclass
    clus
vv   FAM71B MUTATED FAM71B WILD-TYPE
  T1              0               36
  T2              7              109
  T3              0               14
  T4              1               11
D184V7, multiclass
    clus
vv   FAM71B MUTATED FAM71B WILD-TYPE
  N0              5              112
  N1              1               38
  N2              1               16
  N3              1                4
D184V8, multiclass
    clus
vv   FAM71B MUTATED FAM71B WILD-TYPE
  M0              7              158
  M1              0                3
  MX              1                5
D184V9, multiclass
        clus
vv       FAM71B MUTATED FAM71B WILD-TYPE
  I                   3               94
  II                  2               36
  III+IV              3               38
D184V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  FAM71B MUTATED      0    8
  FAM71B WILD-TYPE    4  166
     clus
vv    FAM71B MUTATED FAM71B WILD-TYPE
  NO               0                4
  YES              8              166
D184V11, continuous
D184V12, continuous
D184V13, multiclass
                                             clus
vv                                            FAM71B MUTATED FAM71B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D184V14, continuous

Clustering(185) Variable = MMP8 MUTATION ANALYSIS
D185V1, survival
                sevent
clus2             0  1
  MMP8 MUTATED    7  1
  MMP8 WILD-TYPE 90 69
  MMP8 MUTATED MMP8 WILD-TYPE 
             8            159 
  MMP8 MUTATED MMP8 WILD-TYPE 
             1             69 
$`MMP8 MUTATED`
TCGA-18-3409 TCGA-18-3417 TCGA-18-4083 TCGA-33-4532 TCGA-37-4133 TCGA-39-5027 
       79.46        24.92         6.15        82.98         7.82        60.76 
TCGA-43-5668 TCGA-85-6561 
        8.48         0.79 

$`MMP8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        59.51        28.34         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        0.43         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        70.03         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  MMP8 MUTATED MMP8 WILD-TYPE 
          0.79           0.10 
  MMP8 MUTATED MMP8 WILD-TYPE 
         82.98         173.79 
  MMP8 MUTATED MMP8 WILD-TYPE 
         16.70          17.88 
[1] "0.8 - 83.0 (16.7)"  "0.1 - 173.8 (17.9)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" "MMP8 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE"   "MMP8 MUTATED" 
[1] "hr=" "4.3"
D185V2, continuous
D185V3, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MMP8 MUTATED      0    8
  MMP8 WILD-TYPE   47  123
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  FEMALE            0             47
  MALE              8            123
D185V4, continuous
[1] "Remove cluster labels:" "MMP8 MUTATED"          
clus
  MMP8 MUTATED MMP8 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-22-5492     TCGA-34-5234     TCGA-37-4135     TCGA-37-5819 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"MMP8 WILD-TYPE" "MMP8 WILD-TYPE" "MMP8 WILD-TYPE" 
D185V5, multiclass
                                                             clus
vv                                                            MMP8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            MMP8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
D185V6, multiclass
    clus
vv   MMP8 MUTATED MMP8 WILD-TYPE
  T1            2             34
  T2            5            111
  T3            0             14
  T4            1             11
D185V7, multiclass
    clus
vv   MMP8 MUTATED MMP8 WILD-TYPE
  N0            5            112
  N1            3             36
  N2            0             17
  N3            0              5
D185V8, multiclass
    clus
vv   MMP8 MUTATED MMP8 WILD-TYPE
  M0            7            158
  M1            1              2
  MX            0              6
D185V9, multiclass
        clus
vv       MMP8 MUTATED MMP8 WILD-TYPE
  I                 2             95
  II                3             35
  III+IV            2             39
D185V10, binary
[1] "tbl2"
                cls
clus             [,1] [,2]
  MMP8 MUTATED      0    8
  MMP8 WILD-TYPE    4  166
     clus
vv    MMP8 MUTATED MMP8 WILD-TYPE
  NO             0              4
  YES            8            166
D185V11, continuous
D185V12, continuous
D185V13, multiclass
                                             clus
vv                                            MMP8 MUTATED MMP8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            2             92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4             39
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D185V14, continuous

Clustering(186) Variable = ZFP36L2 MUTATION ANALYSIS
D186V1, survival
                   sevent
clus2                0  1
  ZFP36L2 MUTATED    4  0
  ZFP36L2 WILD-TYPE 93 70
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                4               163 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                0                70 
$`ZFP36L2 MUTATED`
TCGA-37-4135 TCGA-39-5019 TCGA-46-6025 TCGA-56-6545 
        6.81        44.71         0.95         2.04 

$`ZFP36L2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        74.07        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
             0.95              0.10 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
            44.71            173.79 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
            4.425            18.080 
[1] "0.9 - 44.7 (4.4)"   "0.1 - 173.8 (18.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE"   "ZFP36L2 MUTATED" "ZFP36L2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE"   "ZFP36L2 MUTATED" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "ZFP36L2 MUTATED" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE"   "ZFP36L2 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE"   "ZFP36L2 MUTATED" "ZFP36L2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE"   "ZFP36L2 MUTATED" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "ZFP36L2 MUTATED" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE"   "ZFP36L2 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE"   "ZFP36L2 MUTATED" "ZFP36L2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE"   "ZFP36L2 MUTATED" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "ZFP36L2 MUTATED" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE"   "ZFP36L2 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
[1] "hr="     "9100000"
D186V2, continuous
D186V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZFP36L2 MUTATED      1    4
  ZFP36L2 WILD-TYPE   46  127
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  FEMALE               1                46
  MALE                 4               127
D186V4, continuous
[1] "Remove cluster labels:" "ZFP36L2 MUTATED"       
clus
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                1                35 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4133        TCGA-37-5819 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
D186V5, multiclass
                                                             clus
vv                                                            ZFP36L2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               5
                                                             clus
vv                                                            ZFP36L2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               167
D186V6, multiclass
    clus
vv   ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  T1               0                36
  T2               5               111
  T3               0                14
  T4               0                12
D186V7, multiclass
    clus
vv   ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  N0               3               114
  N1               2                37
  N2               0                17
  N3               0                 5
D186V8, multiclass
    clus
vv   ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  M0               5               160
  M1               0                 3
  MX               0                 6
D186V9, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  I                    2                95
  II                   2                36
  III+IV               1                40
D186V10, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  ZFP36L2 MUTATED      0    5
  ZFP36L2 WILD-TYPE    4  169
     clus
vv    ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  NO                0                 4
  YES               5               169
D186V11, continuous
D186V12, continuous
D186V13, multiclass
                                             clus
vv                                            ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                 8
D186V14, continuous
[1] "Remove cluster labels:" "ZFP36L2 MUTATED"       
clus
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
                2               103 
       TCGA-18-3406        TCGA-18-3417        TCGA-21-1078        TCGA-21-5782 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-21-5786        TCGA-21-5787        TCGA-22-0944        TCGA-22-1002 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-4591 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4607        TCGA-22-4613        TCGA-22-5472 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5473        TCGA-22-5474        TCGA-22-5480        TCGA-22-5482 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4533        TCGA-33-4547        TCGA-33-4582 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-33-4583        TCGA-33-4586        TCGA-34-5240        TCGA-34-5241 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-37-4133        TCGA-37-5819        TCGA-39-5021        TCGA-39-5022 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5035        TCGA-39-5036 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-43-2578        TCGA-43-3394 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-43-3920        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-43-6771        TCGA-56-1622        TCGA-56-5898        TCGA-56-6546 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2715 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2723 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-6202 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2727        TCGA-66-2734        TCGA-66-2742        TCGA-66-2744 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2770        TCGA-66-2771 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2773        TCGA-66-2777        TCGA-66-2778        TCGA-66-2780 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2781        TCGA-66-2782        TCGA-66-2783        TCGA-66-2786 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" "ZFP36L2 WILD-TYPE" 

Clustering(187) Variable = CLEC4C MUTATION ANALYSIS
D187V1, survival
                  sevent
clus2               0  1
  CLEC4C MUTATED    2  3
  CLEC4C WILD-TYPE 95 67
  CLEC4C MUTATED CLEC4C WILD-TYPE 
               5              162 
  CLEC4C MUTATED CLEC4C WILD-TYPE 
               3               67 
$`CLEC4C MUTATED`
TCGA-22-4595 TCGA-22-5473 TCGA-39-5016 TCGA-39-5036 TCGA-66-2789 
       24.13        63.52        74.07        35.64         4.04 

$`CLEC4C WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 
        1.74        14.10        27.02        20.45        35.08        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
        3.39        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 
        1.71        24.33         1.94        27.35        15.58         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        40.01        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  CLEC4C MUTATED CLEC4C WILD-TYPE 
            4.04             0.10 
  CLEC4C MUTATED CLEC4C WILD-TYPE 
           74.07           173.79 
  CLEC4C MUTATED CLEC4C WILD-TYPE 
           35.64            16.78 
[1] "4.0 - 74.1 (35.6)"  "0.1 - 173.8 (16.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE"   "CLEC4C MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE"   "CLEC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE"   "CLEC4C MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE"   "CLEC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE"   "CLEC4C MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE"   "CLEC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "CLEC4C MUTATED" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE"   "CLEC4C MUTATED" "CLEC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
[1] "hr=" "1.1"
D187V2, continuous
D187V3, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLEC4C MUTATED      0    5
  CLEC4C WILD-TYPE   47  126
        clus
vv       CLEC4C MUTATED CLEC4C WILD-TYPE
  FEMALE              0               47
  MALE                5              126
D187V4, continuous
[1] "Remove cluster labels:" "CLEC4C MUTATED"        
clus
  CLEC4C MUTATED CLEC4C WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5474       TCGA-22-5477 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"CLEC4C WILD-TYPE" "CLEC4C WILD-TYPE" 
D187V5, multiclass
                                                             clus
vv                                                            CLEC4C MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              4
                                                             clus
vv                                                            CLEC4C WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              168
D187V6, multiclass
    clus
vv   CLEC4C MUTATED CLEC4C WILD-TYPE
  T1              1               35
  T2              2              114
  T3              2               12
  T4              0               12
D187V7, multiclass
    clus
vv   CLEC4C MUTATED CLEC4C WILD-TYPE
  N0              2              115
  N1              1               38
  N2              1               16
  N3              1                4
D187V8, multiclass
    clus
vv   CLEC4C MUTATED CLEC4C WILD-TYPE
  M0              4              161
  M1              0                3
  MX              0                6
D187V9, multiclass
        clus
vv       CLEC4C MUTATED CLEC4C WILD-TYPE
  I                   2               95
  II                  1               37
  III+IV              2               39
D187V10, binary
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLEC4C MUTATED      1    4
  CLEC4C WILD-TYPE    3  170
     clus
vv    CLEC4C MUTATED CLEC4C WILD-TYPE
  NO               1                3
  YES              4              170
D187V11, continuous
D187V12, continuous
D187V13, multiclass
                                             clus
vv                                            CLEC4C MUTATED CLEC4C WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D187V14, continuous

Clustering(188) Variable = FYB MUTATION ANALYSIS
D188V1, survival
               sevent
clus2            0  1
  FYB MUTATED    7  2
  FYB WILD-TYPE 90 68
  FYB MUTATED FYB WILD-TYPE 
            9           158 
  FYB MUTATED FYB WILD-TYPE 
            2            68 
$`FYB MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3421 TCGA-22-5473 TCGA-34-5929 TCGA-37-5819 
       79.46        46.52        43.76        63.52         4.96         3.39 
TCGA-56-6546 TCGA-60-2723 TCGA-66-2783 
        1.02        22.78        24.95 

$`FYB WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07         4.80        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34        24.92         1.61         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 
        7.73        14.07        22.95         5.52         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         6.81         0.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2698 TCGA-60-2707 
        2.07        28.93         0.10         2.04        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       35.34        30.61         3.16        26.07        24.10         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  FYB MUTATED FYB WILD-TYPE 
         1.02          0.10 
  FYB MUTATED FYB WILD-TYPE 
        79.46        173.79 
  FYB MUTATED FYB WILD-TYPE 
        24.95         16.78 
[1] "1.0 - 79.5 (24.9)"  "0.1 - 173.8 (16.8)"
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
  "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
  "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
  "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
  "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
  "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
  "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE"   "FYB MUTATED" "FYB WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" "FYB WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"FYB WILD-TYPE" "FYB WILD-TYPE" 
[1] "hr=" "2.4"
D188V2, continuous
D188V3, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FYB MUTATED      3    7
  FYB WILD-TYPE   44  124
        clus
vv       FYB MUTATED FYB WILD-TYPE
  FEMALE           3            44
  MALE             7           124
D188V4, continuous
D188V5, multiclass
                                                             clus
vv                                                            FYB MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                 1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           9
                                                             clus
vv                                                            FYB WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           163
D188V6, multiclass
    clus
vv   FYB MUTATED FYB WILD-TYPE
  T1           1            35
  T2           7           109
  T3           2            12
  T4           0            12
D188V7, multiclass
    clus
vv   FYB MUTATED FYB WILD-TYPE
  N0           6           111
  N1           1            38
  N2           2            15
  N3           1             4
D188V8, multiclass
    clus
vv   FYB MUTATED FYB WILD-TYPE
  M0           9           156
  M1           0             3
  MX           1             5
D188V9, multiclass
        clus
vv       FYB MUTATED FYB WILD-TYPE
  I                4            93
  II               0            38
  III+IV           4            37
D188V10, binary
[1] "tbl2"
               cls
clus            [,1] [,2]
  FYB MUTATED      0   10
  FYB WILD-TYPE    4  164
     clus
vv    FYB MUTATED FYB WILD-TYPE
  NO            0             4
  YES          10           164
D188V11, continuous
D188V12, continuous
D188V13, multiclass
                                             clus
vv                                            FYB MUTATED FYB WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           4            90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                4            39
  CURRENT SMOKER                                        1            27
  LIFELONG NON-SMOKER                                   1             7
D188V14, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
                    "STOPPEDSMOKINGYEAR" 
                                     V13 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V14 
             "YEAROFTOBACCOSMOKINGONSET" 
> q(save="no")
