
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.75.4002/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/SKCM-TM/2404513/1.GDAC_mergedClustering.Finished/SKCM-TM.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/SKCM-TP/2332214/1.GDAC_clinicalDataPicker.Finished/SKCM-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=169, in cluster file=237, common to both=144
[1]   8 144
[1] "CN_CNMF"
[1] 3
 1  2  3 
56 47 41 
 1  2  3 
56 47 41 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
38 53 48 
 1  2  3 
38 53 48 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4  5 
17 17 17 27 19 
 1  2  3  4  5 
17 17 17 27 19 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3  4 
23 19 37 18 
 1  2  3  4 
23 19 37 18 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
51 40 50 
 1  2  3 
51 40 50 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
36 69 36 
 1  2  3 
36 69 36 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3  4  5 
31 50 31 22  2 
 1  2  3  4 
31 50 31 22 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
16 89 31 
 1  2  3 
16 89 31 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "GENDER"                                
 [7] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [8] "RADIATIONTHERAPY"                      
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "BATCHNUMBER"                           

Input Data has 10 rows and 144 columns.

[1] "Batch" "10"   
[1] "Last Follow UP"
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-D9-A3Z3 
        4511         1513           82          194          345           98 
TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 
        1487           NA         3564           NA         5926           NA 
TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A1IA TCGA-DA-A1IB 
          NA         3265         1861           NA           NA          713 
TCGA-DA-A1IC TCGA-DA-A3F2 TCGA-DA-A3F3 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A17X 
          NA          870           NA         6553          477           NA 
TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20B 
          NA           NA           NA           NA           NA         3335 
TCGA-EE-A20F TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E 
        2399           NA           NA         1455           NA         1205 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29Q 
         979           NA         1349           NA         1716         1136 
TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29T TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A0 
         440         1700        10523           NA           NA           NA 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A5 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
        2401          743           NA         1787         1446         1315 
TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK 
        9567         4134         5536          686         2717         1664 
TCGA-EE-A2GL TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GR 
        1673         2296         2766         3101           NA          435 
TCGA-EE-A2GS TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 
        1691          595         2042           NA         3931           NA 
TCGA-EE-A2M8 TCGA-EE-A2MC TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH 
          NA           NA           NA           NA           NA           NA 
TCGA-EE-A2MI TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM TCGA-EE-A2MN 
          NA           NA         4403         6175           NA           NA 
TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A2MU 
        7562           NA         3150         4150         1265         1620 
TCGA-EE-A3AA TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE TCGA-EE-A3AF 
         129         3733          786          112          813           NA 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L 
         714           NA           NA           NA           NA           NA 
TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A19O TCGA-ER-A1A1 TCGA-ER-A3ET TCGA-ER-A3PL 
          NA         1340           NA         2433         2443         1010 
TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 
        2448           NA           NA           NA           NA           NA 
TCGA-FS-A1Z4 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZB TCGA-FS-A1ZC TCGA-FS-A1ZD 
          NA           NA           NA           NA           NA           NA 
TCGA-FS-A1ZE TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK 
        1225           NA           NA           NA           NA           NA 
TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZQ TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZT 
        3080           NA           NA           NA         4525         1617 
TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A262 TCGA-GN-A264 
          NA         1505           NA            6         3664           NA 
TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26A TCGA-GN-A26D 
        2577           NA           NA           NA           NA         1204 
Variable 1:'AGE':	nDistinctValues=61,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=68,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=73,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 8:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'BATCH.NUMBER':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"    "GENDER"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 144 columns, 1 survival variables, and 2 non-survival variables.
AGE, nv=61, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 26 29
  subtype2 28 19
  subtype3 19 20
subtype1 subtype2 subtype3 
      55       47       39 
subtype1 subtype2 subtype3 
      29       19       20 
$subtype1
TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z3 TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1IA 
        2.70         6.38         3.22        48.89       194.83        65.92 
TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EE-A17Z TCGA-EE-A185 TCGA-EE-A20B TCGA-EE-A29D 
       68.09        10.49         8.65         4.93       109.64        13.97 
TCGA-EE-A29L TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A5 TCGA-EE-A2GB 
        2.56        14.47        55.89        25.87        39.25        47.54 
TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       22.55        89.33        90.94        13.87        14.30        55.59 
TCGA-EE-A2GU TCGA-EE-A2MD TCGA-EE-A2MI TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MT 
       67.13        47.28       204.62        47.54       248.61        41.59 
TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F TCGA-ER-A19L 
      122.73         3.68        23.47        12.59        26.37       131.08 
TCGA-ER-A19N TCGA-ER-A3PL TCGA-FR-A3YN TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1Z0 
       44.05        33.21        80.48       216.92        48.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1ZA TCGA-FS-A1ZH TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZP 
       20.91        27.68        32.71        47.38        23.93        74.73 
TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A267 TCGA-GN-A268 
       53.16        26.56        27.06         0.20        64.41        62.76 
TCGA-GN-A26D 
       39.58 

$subtype2
TCGA-D9-A149 TCGA-D9-A3Z1 TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EE-A17X 
       49.74        11.34        23.44        28.60        15.68        29.82 
TCGA-EE-A182 TCGA-EE-A183 TCGA-EE-A20F TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q 
       14.70        26.86        78.87        44.35        18.58        37.35 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GH 
       46.82        78.94        24.43        43.23       314.53       182.01 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2M8 
       54.71        55.00        19.56        21.67        28.80        19.76 
TCGA-EE-A2MC TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MM 
       61.51       103.27       103.17        96.23       203.01       167.87 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-ER-A1A1 
       43.23       103.56        53.26         4.24        25.84        79.99 
TCGA-ER-A3ET TCGA-FS-A1YY TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG 
       80.32       228.59        28.08        48.85        40.27         9.70 
TCGA-FS-A1ZS TCGA-FS-A1ZW TCGA-GN-A262 TCGA-GN-A265 TCGA-GN-A266 
      148.77        49.48       120.46        84.72        10.09 

$subtype3
TCGA-D9-A148 TCGA-DA-A1HW TCGA-DA-A1HY TCGA-DA-A1I0 TCGA-DA-A1I2 TCGA-DA-A1I4 
      148.31        36.03       117.17        20.38       176.55        35.93 
TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EE-A181 TCGA-EE-A20H 
      107.34        61.18        53.92       215.44        33.73       168.26 
TCGA-EE-A29A TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29P TCGA-EE-A29T 
       63.32        47.84        39.62        32.19        56.42       345.96 
TCGA-EE-A29X TCGA-EE-A2A6 TCGA-EE-A2GE TCGA-EE-A2GM TCGA-EE-A2GO TCGA-EE-A2M6 
       17.92        58.75       135.91        75.48       101.95       129.24 
TCGA-EE-A2MH TCGA-EE-A2MK TCGA-EE-A2MS TCGA-EE-A3AE TCGA-EE-A3AF TCGA-EE-A3AH 
       16.96       144.76       136.44        26.73        13.81       138.77 
TCGA-ER-A19J TCGA-ER-A19M TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZF TCGA-FS-A1ZM 
        6.41        61.05         7.76        53.52        15.45       101.26 
TCGA-FS-A1ZR TCGA-GN-A264 TCGA-GN-A26A 
       11.41       117.93        32.48 

subtype1 subtype2 subtype3 
    0.20     4.24     6.41 
subtype1 subtype2 subtype3 
  248.61   314.53   345.96 
subtype1 subtype2 subtype3 
   41.59    46.82    58.75 
[1] "0.2 - 248.6 (41.6)" "4.2 - 314.5 (46.8)" "6.4 - 346.0 (58.8)"
  [1] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [43] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype3" "subtype1"
  [1] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [43] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype3" "subtype1"
  [1] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [19] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [37] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [43] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[115] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[127] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[139] "subtype1" "subtype3" "subtype1"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1 20 36
  subtype2 16 31
  subtype3 15 26
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   36
  subtype2   16   31
  subtype3   15   26
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       20       16       15
  MALE         36       31       26

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 13 25
  subtype2 29 22
  subtype3 27 20
subtype1 subtype2 subtype3 
      38       51       47 
subtype1 subtype2 subtype3 
      25       22       20 
$subtype1
TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A3F3 TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A20B 
      176.55        65.92        10.49         8.65        14.70       109.64 
TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29R TCGA-EE-A2A5 TCGA-EE-A2GN TCGA-EE-A2GP 
      168.26        13.97        14.47        39.25        90.94        13.87 
TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2M7 TCGA-EE-A2MI TCGA-EE-A2MS TCGA-EE-A2MT 
       14.30        55.59        28.80       204.62       136.44        41.59 
TCGA-EE-A3AC TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1Z0 
       25.84        12.59       131.08        80.32        48.59       202.62 
TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZJ TCGA-FS-A1ZK 
       20.91         7.76        53.52        40.27        47.38        23.93 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FW-A3I3 
       74.73        11.41       148.77        26.56        27.06         0.20 
TCGA-GN-A267 TCGA-GN-A26D 
       64.41        39.58 

$subtype2
TCGA-D9-A148 TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1HY TCGA-DA-A1I1 TCGA-DA-A1I7 
      148.31         6.38        48.89       117.17       194.83        61.18 
TCGA-DA-A1I8 TCGA-DA-A1IC TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A29A 
       53.92        68.09        29.82        33.73         4.93        63.32 
TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29P TCGA-EE-A29Q TCGA-EE-A29S TCGA-EE-A29X 
       32.19         2.56        56.42        37.35        55.89        17.92 
TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GM 
       24.43        47.54        43.23        22.55        89.33        75.48 
TCGA-EE-A2GO TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MM 
      101.95        67.13       129.24       144.76       203.01       167.87 
TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A3AB TCGA-EE-A3AD TCGA-EE-A3AE 
       47.54       248.61        43.23       122.73         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-FS-A1YW 
       13.81        23.47       138.77        26.37         6.41       216.92 
TCGA-FS-A1YY TCGA-FS-A1ZA TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZM TCGA-FS-A1ZW 
      228.59        27.68        15.45         9.70       101.26        49.48 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A268 
      120.46       117.93        62.76 

$subtype3
TCGA-D9-A149 TCGA-D9-A1JW TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I4 TCGA-DA-A1I5 
       49.74         2.70        36.03        20.38        35.93       107.34 
TCGA-DA-A1IB TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A183 TCGA-EE-A20F 
       23.44        28.60       215.44        15.68        26.86        78.87 
TCGA-EE-A29C TCGA-EE-A29E TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29T TCGA-EE-A29V 
       47.84        39.62        44.35        18.58       345.96        25.87 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A6 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH 
       46.82        78.94        58.75       314.53       135.91       182.01 
TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M5 TCGA-EE-A2M8 TCGA-EE-A2MC 
       54.71        55.00        19.56        21.67        19.76        61.51 
TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MR 
       47.28       103.27       103.17        16.96        96.23       103.56 
TCGA-EE-A2MU TCGA-EE-A3AA TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1Z4 TCGA-FS-A1ZB 
       53.26         4.24        44.05        79.99        28.08        48.85 
TCGA-FS-A1ZH TCGA-FS-A1ZT TCGA-GN-A265 TCGA-GN-A266 TCGA-GN-A26A 
       32.71        53.16        84.72        10.09        32.48 

subtype1 subtype2 subtype3 
    0.20     2.56     2.70 
subtype1 subtype2 subtype3 
  204.62   248.61   345.96 
subtype1 subtype2 subtype3 
  39.925   53.920   47.280 
[1] "0.2 - 204.6 (39.9)" "2.6 - 248.6 (53.9)" "2.7 - 346.0 (47.3)"
  [1] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1"
  [1] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1"
  [1] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [13] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[103] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[109] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1 14 24
  subtype2 24 29
  subtype3 13 35
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14   24
  subtype2   24   29
  subtype3   13   35
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       14       24       13
  MALE         24       29       35

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1  9  8
  subtype2  3 12
  subtype3 12  5
  subtype4 12 14
  subtype5 13  6
subtype1 subtype2 subtype3 subtype4 subtype5 
      17       15       17       26       19 
subtype1 subtype2 subtype3 subtype4 subtype5 
       8       12        5       14        6 
$subtype1
TCGA-EE-A29C TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2ML 
       47.84        14.47        55.89       204.62       144.76       203.01 
TCGA-EE-A2MP TCGA-EE-A2MU TCGA-EE-A3AB TCGA-ER-A19D TCGA-ER-A19L TCGA-FS-A1YW 
      248.61        53.26       122.73        12.59       131.08       216.92 
TCGA-FS-A1ZA TCGA-FS-A1ZD TCGA-FS-A1ZH TCGA-GN-A265 TCGA-GN-A266 
       27.68        53.52        32.71        84.72        10.09 

$subtype2
TCGA-DA-A1HY TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I8 TCGA-DA-A1IC TCGA-EE-A17X 
      117.17        35.93       107.34        53.92        68.09        29.82 
TCGA-EE-A182 TCGA-EE-A29E TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2GP TCGA-EE-A2M5 
       14.70        39.62        25.87        46.82        13.87        21.67 
TCGA-EE-A2MC TCGA-GN-A267 TCGA-GN-A26A 
       61.51        64.41        32.48 

$subtype3
TCGA-DA-A1HV TCGA-DA-A1IB TCGA-EE-A181 TCGA-EE-A20F TCGA-EE-A29N TCGA-EE-A29P 
       48.89        23.44        33.73        78.87        18.58        56.42 
TCGA-EE-A29T TCGA-EE-A2A6 TCGA-EE-A2GK TCGA-EE-A2GT TCGA-EE-A2GU TCGA-EE-A2M8 
      345.96        58.75        54.71        19.56        67.13        19.76 
TCGA-EE-A2MJ TCGA-EE-A2MR TCGA-EE-A3AA TCGA-ER-A19N TCGA-FS-A1Z0 
       96.23       103.56         4.24        44.05       202.62 

$subtype4
TCGA-EE-A29L TCGA-EE-A2A2 TCGA-EE-A2GL TCGA-EE-A2GS TCGA-EE-A2M6 TCGA-EE-A2MD 
        2.56        24.43        55.00        55.59       129.24        47.28 
TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MS TCGA-EE-A3AC TCGA-EE-A3AE TCGA-EE-A3AF 
      167.87        47.54       136.44        25.84        26.73        13.81 
TCGA-EE-A3AG TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A1A1 TCGA-FS-A1Z3 TCGA-FS-A1Z4 
       23.47        26.37         6.41        79.99        20.91        28.08 
TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-GN-A262 TCGA-GN-A264 
       47.38        23.93        53.16        26.56       120.46       117.93 
TCGA-GN-A268 TCGA-GN-A26D 
       62.76        39.58 

$subtype5
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-DA-A1HW TCGA-DA-A1I2 
      148.31        49.74         2.70         6.38        36.03       176.55 
TCGA-DA-A1IA TCGA-EE-A185 TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A2GC TCGA-EE-A2GH 
       65.92         4.93        32.19        44.35        43.23       182.01 
TCGA-EE-A2GI TCGA-EE-A2GR TCGA-EE-A2MT TCGA-EE-A3AD TCGA-FS-A1ZG TCGA-FS-A1ZM 
       22.55        14.30        41.59         3.68         9.70       101.26 
TCGA-FS-A1ZP 
       74.73 

subtype1 subtype2 subtype3 subtype4 subtype5 
   10.09    13.87     4.24     2.56     2.70 
subtype1 subtype2 subtype3 subtype4 subtype5 
  248.61   117.17   345.96   167.87   182.01 
subtype1 subtype2 subtype3 subtype4 subtype5 
   55.89    39.62    54.71    43.43    41.59 
[1] "10.1 - 248.6 (55.9)" "13.9 - 117.2 (39.6)" "4.2 - 346.0 (54.7)" 
[4] "2.6 - 167.9 (43.4)"  "2.7 - 182.0 (41.6)" 
 [1] "subtype5" "subtype5" "subtype5" "subtype5" "subtype3" "subtype5"
 [7] "subtype2" "subtype5" "subtype2" "subtype2" "subtype2" "subtype5"
[13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype5"
[19] "subtype3" "subtype1" "subtype2" "subtype5" "subtype4" "subtype5"
[25] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[31] "subtype2" "subtype4" "subtype3" "subtype5" "subtype5" "subtype5"
[37] "subtype3" "subtype4" "subtype2" "subtype5" "subtype4" "subtype3"
[43] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype4"
[49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[55] "subtype1" "subtype3" "subtype4" "subtype5" "subtype1" "subtype3"
[61] "subtype1" "subtype4" "subtype5" "subtype4" "subtype4" "subtype4"
[67] "subtype1" "subtype4" "subtype4" "subtype1" "subtype3" "subtype4"
[73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[79] "subtype5" "subtype1" "subtype4" "subtype4" "subtype5" "subtype5"
[85] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[91] "subtype2" "subtype4" "subtype2" "subtype4"
 [1] "subtype5" "subtype5" "subtype5" "subtype5" "subtype3" "subtype5"
 [7] "subtype2" "subtype5" "subtype2" "subtype2" "subtype2" "subtype5"
[13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype5"
[19] "subtype3" "subtype1" "subtype2" "subtype5" "subtype4" "subtype5"
[25] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[31] "subtype2" "subtype4" "subtype3" "subtype5" "subtype5" "subtype5"
[37] "subtype3" "subtype4" "subtype2" "subtype5" "subtype4" "subtype3"
[43] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype4"
[49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[55] "subtype1" "subtype3" "subtype4" "subtype5" "subtype1" "subtype3"
[61] "subtype1" "subtype4" "subtype5" "subtype4" "subtype4" "subtype4"
[67] "subtype1" "subtype4" "subtype4" "subtype1" "subtype3" "subtype4"
[73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[79] "subtype5" "subtype1" "subtype4" "subtype4" "subtype5" "subtype5"
[85] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[91] "subtype2" "subtype4" "subtype2" "subtype4"
 [1] "subtype5" "subtype5" "subtype5" "subtype5" "subtype3" "subtype5"
 [7] "subtype2" "subtype5" "subtype2" "subtype2" "subtype2" "subtype5"
[13] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype5"
[19] "subtype3" "subtype1" "subtype2" "subtype5" "subtype4" "subtype5"
[25] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[31] "subtype2" "subtype4" "subtype3" "subtype5" "subtype5" "subtype5"
[37] "subtype3" "subtype4" "subtype2" "subtype5" "subtype4" "subtype3"
[43] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype4"
[49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[55] "subtype1" "subtype3" "subtype4" "subtype5" "subtype1" "subtype3"
[61] "subtype1" "subtype4" "subtype5" "subtype4" "subtype4" "subtype4"
[67] "subtype1" "subtype4" "subtype4" "subtype1" "subtype3" "subtype4"
[73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[79] "subtype5" "subtype1" "subtype4" "subtype4" "subtype5" "subtype5"
[85] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[91] "subtype2" "subtype4" "subtype2" "subtype4"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1  6 11
  subtype2  5 12
  subtype3  9  8
  subtype4 11 16
  subtype5  8 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   11
  subtype2    5   12
  subtype3    9    8
  subtype4   11   16
  subtype5    8   11

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 17  6
  subtype2  7 11
  subtype3 18 18
  subtype4  7 10
subtype1 subtype2 subtype3 subtype4 
      23       18       36       17 
subtype1 subtype2 subtype3 subtype4 
       6       11       18       10 
$subtype1
TCGA-D9-A1JX TCGA-DA-A1HV TCGA-DA-A1IB TCGA-EE-A20F TCGA-EE-A29N TCGA-EE-A29P 
        6.38        48.89        23.44        78.87        18.58        56.42 
TCGA-EE-A29T TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GH TCGA-EE-A2GK TCGA-EE-A2GT 
      345.96        24.43        58.75       182.01        54.71        19.56 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M8 TCGA-EE-A2MP TCGA-EE-A2MR TCGA-EE-A3AA 
       67.13       129.24        19.76       248.61       103.56         4.24 
TCGA-EE-A3AF TCGA-ER-A19N TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZH 
       13.81        44.05       202.62        28.08        32.71 

$subtype2
TCGA-DA-A1I8 TCGA-EE-A29S TCGA-EE-A2GL TCGA-EE-A2MI TCGA-EE-A2MM TCGA-EE-A2MN 
       53.92        55.89        55.00       204.62       167.87        47.54 
TCGA-EE-A2MT TCGA-EE-A3AB TCGA-EE-A3AC TCGA-EE-A3AG TCGA-ER-A19D TCGA-ER-A19F 
       41.59       122.73        25.84        23.47        12.59        26.37 
TCGA-ER-A19J TCGA-FS-A1ZD TCGA-FS-A1ZP TCGA-FS-A1ZU TCGA-GN-A266 TCGA-GN-A26D 
        6.41        53.52        74.73        26.56        10.09        39.58 

$subtype3
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-DA-A1HW TCGA-DA-A1I2 TCGA-DA-A1IA 
      148.31        49.74         2.70        36.03       176.55        65.92 
TCGA-DA-A1IC TCGA-EE-A17X TCGA-EE-A181 TCGA-EE-A185 TCGA-EE-A29H TCGA-EE-A29L 
       68.09        29.82        33.73         4.93        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A2GR TCGA-EE-A2GS TCGA-EE-A2MD 
       44.35        43.23        22.55        14.30        55.59        47.28 
TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MS TCGA-EE-A3AD TCGA-EE-A3AE 
       96.23       144.76       203.01       136.44         3.68        26.73 
TCGA-ER-A19L TCGA-ER-A1A1 TCGA-FS-A1YW TCGA-FS-A1Z3 TCGA-FS-A1ZG TCGA-FS-A1ZJ 
      131.08        79.99       216.92        20.91         9.70        47.38 
TCGA-FS-A1ZK TCGA-FS-A1ZM TCGA-FS-A1ZT TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A268 
       23.93       101.26        53.16       120.46       117.93        62.76 

$subtype4
TCGA-DA-A1HY TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-EE-A182 TCGA-EE-A29C TCGA-EE-A29E 
      117.17        35.93       107.34        14.70        47.84        39.62 
TCGA-EE-A29R TCGA-EE-A29V TCGA-EE-A2A0 TCGA-EE-A2GP TCGA-EE-A2M5 TCGA-EE-A2MC 
       14.47        25.87        46.82        13.87        21.67        61.51 
TCGA-EE-A2MU TCGA-FS-A1ZA TCGA-GN-A265 TCGA-GN-A267 TCGA-GN-A26A 
       53.26        27.68        84.72        64.41        32.48 

subtype1 subtype2 subtype3 subtype4 
    4.24     6.41     2.56    13.87 
subtype1 subtype2 subtype3 subtype4 
  345.96   204.62   216.92   117.17 
subtype1 subtype2 subtype3 subtype4 
  48.890   44.565   48.560   39.620 
[1] "4.2 - 346.0 (48.9)"  "6.4 - 204.6 (44.6)"  "2.6 - 216.9 (48.6)" 
[4] "13.9 - 117.2 (39.6)"
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [7] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
[13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[19] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[25] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[31] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[37] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype1"
[43] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
[49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype4" "subtype1"
[61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[73] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype2"
[79] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[85] "subtype3" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
[91] "subtype4" "subtype3" "subtype4" "subtype2"
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [7] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
[13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[19] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[25] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[31] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[37] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype1"
[43] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
[49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype4" "subtype1"
[61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[73] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype2"
[79] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[85] "subtype3" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
[91] "subtype4" "subtype3" "subtype4" "subtype2"
 [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [7] "subtype4" "subtype3" "subtype4" "subtype4" "subtype2" "subtype3"
[13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[19] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype3"
[25] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[31] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[37] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype1"
[43] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
[49] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype4" "subtype1"
[61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[73] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype2"
[79] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[85] "subtype3" "subtype2" "subtype3" "subtype3" "subtype4" "subtype2"
[91] "subtype4" "subtype3" "subtype4" "subtype2"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 12 11
  subtype2  6 13
  subtype3 15 22
  subtype4  6 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   11
  subtype2    6   13
  subtype3   15   22
  subtype4    6   12
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       12        6       15        6
  MALE         11       13       22       12

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 23 27
  subtype2 29 10
  subtype3 18 31
subtype1 subtype2 subtype3 
      50       39       49 
subtype1 subtype2 subtype3 
      27       10       31 
$subtype1
TCGA-D9-A1JX TCGA-DA-A1HY TCGA-DA-A1I2 TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F3 
        6.38       117.17       176.55        61.18        53.92        10.49 
TCGA-DA-A3F5 TCGA-EE-A20B TCGA-EE-A20H TCGA-EE-A29A TCGA-EE-A29Q TCGA-EE-A29R 
      215.44       109.64       168.26        63.32        37.35        14.47 
TCGA-EE-A29T TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GN TCGA-EE-A2GO 
      345.96        39.25       314.53       135.91        90.94       101.95 
TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2M7 TCGA-EE-A2MC 
       13.87        55.59        21.67       129.24        28.80        61.51 
TCGA-EE-A2MI TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MP TCGA-EE-A2MS TCGA-EE-A3AB 
      204.62       144.76       167.87       248.61       136.44       122.73 
TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D TCGA-ER-A19L TCGA-ER-A19M TCGA-ER-A3PL 
       23.47       138.77        12.59       131.08        61.05        33.21 
TCGA-FS-A1YX TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZD 
       48.59       202.62        20.91         7.76        27.68        53.52 
TCGA-FS-A1ZF TCGA-FS-A1ZH TCGA-FS-A1ZM TCGA-FS-A1ZR TCGA-FS-A1ZS TCGA-GN-A262 
       15.45        32.71       101.26        11.41       148.77       120.46 
TCGA-GN-A266 TCGA-GN-A26A 
       10.09        32.48 

$subtype2
TCGA-D9-A149 TCGA-DA-A1HV TCGA-DA-A1I1 TCGA-DA-A1I5 TCGA-DA-A1IB TCGA-DA-A3F8 
       49.74        48.89       194.83       107.34        23.44        15.68 
TCGA-EE-A181 TCGA-EE-A20F TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A2A0 
       33.73        78.87        18.58        56.42        55.89        46.82 
TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GH TCGA-EE-A2GI 
       78.94        24.43        58.75        43.23       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2ME 
       89.33        54.71        55.00        19.56        19.76       103.27 
TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2ML TCGA-EE-A2MR TCGA-EE-A2MU 
      103.17        16.96        96.23       203.01       103.56        53.26 
TCGA-EE-A3AA TCGA-EE-A3AE TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1Z4 TCGA-FS-A1ZP 
        4.24        26.73        44.05        79.99        28.08        74.73 
TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-GN-A265 
       53.16        49.48        84.72 

$subtype3
TCGA-D9-A148 TCGA-D9-A1JW TCGA-D9-A3Z1 TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I4 
      148.31         2.70        11.34        36.03        20.38        35.93 
TCGA-DA-A1IA TCGA-DA-A1IC TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A183 
       65.92        68.09        29.82         8.65        14.70        26.86 
TCGA-EE-A185 TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        4.93        47.84        13.97        39.62        32.19         2.56 
TCGA-EE-A29M TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2GB TCGA-EE-A2GM TCGA-EE-A2GR 
       44.35        25.87        17.92        47.54        75.48        14.30 
TCGA-EE-A2GU TCGA-EE-A2MD TCGA-EE-A2MN TCGA-EE-A2MQ TCGA-EE-A2MT TCGA-EE-A3AC 
       67.13        47.28        47.54        43.23        41.59        25.84 
TCGA-EE-A3AD TCGA-EE-A3AF TCGA-ER-A19F TCGA-ER-A19J TCGA-FR-A3YN TCGA-FS-A1YW 
        3.68        13.81        26.37         6.41        80.48       216.92 
TCGA-FS-A1YY TCGA-FS-A1ZB TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK 
      228.59        48.85        40.27         9.70        47.38        23.93 
TCGA-FS-A1ZU TCGA-FS-A1ZY TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
       26.56        27.06         0.20       117.93        64.41        62.76 
TCGA-GN-A26D 
       39.58 

subtype1 subtype2 subtype3 
    6.38     4.24     0.20 
subtype1 subtype2 subtype3 
  345.96   203.01   228.59 
subtype1 subtype2 subtype3 
  61.345   53.260   35.930 
[1] "6.4 - 346.0 (61.3)" "4.2 - 203.0 (53.3)" "0.2 - 228.6 (35.9)"
  [1] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
  [7] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
  [7] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
  [7] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 21 30
  subtype2 11 29
  subtype3 18 32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   21   30
  subtype2   11   29
  subtype3   18   32
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       21       11       18
  MALE         30       29       32

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 14 21
  subtype2 43 25
  subtype3 13 22
subtype1 subtype2 subtype3 
      35       68       35 
subtype1 subtype2 subtype3 
      21       25       22 
$subtype1
TCGA-DA-A1HY TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EE-A20B TCGA-EE-A20H 
      117.17        61.18        53.92       215.44       109.64       168.26 
TCGA-EE-A29A TCGA-EE-A29R TCGA-EE-A29T TCGA-EE-A2A5 TCGA-EE-A2GD TCGA-EE-A2GE 
       63.32        14.47       345.96        39.25       314.53       135.91 
TCGA-EE-A2GO TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2M7 TCGA-EE-A2MC 
      101.95        13.87        55.59        21.67        28.80        61.51 
TCGA-EE-A2MI TCGA-EE-A2MM TCGA-EE-A3AB TCGA-EE-A3AG TCGA-EE-A3AH TCGA-ER-A19D 
      204.62       167.87       122.73        23.47       138.77        12.59 
TCGA-ER-A19L TCGA-FS-A1YX TCGA-FS-A1Z7 TCGA-FS-A1ZA TCGA-FS-A1ZD TCGA-FS-A1ZF 
      131.08        48.59         7.76        27.68        53.52        15.45 
TCGA-FS-A1ZH TCGA-FS-A1ZS TCGA-GN-A262 TCGA-GN-A266 TCGA-GN-A26A 
       32.71       148.77       120.46        10.09        32.48 

$subtype2
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-D9-A1JX TCGA-D9-A3Z1 TCGA-DA-A1HV 
      148.31        49.74         2.70         6.38        11.34        48.89 
TCGA-DA-A1HW TCGA-DA-A1I0 TCGA-DA-A1I1 TCGA-DA-A1I2 TCGA-DA-A1I5 TCGA-DA-A1IB 
       36.03        20.38       194.83       176.55       107.34        23.44 
TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-DA-A3F8 TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A20F 
       68.09        10.49        15.68        33.73        26.86        78.87 
TCGA-EE-A29H TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29P TCGA-EE-A29S TCGA-EE-A29X 
       32.19        44.35        18.58        56.42        55.89        17.92 
TCGA-EE-A2A0 TCGA-EE-A2A1 TCGA-EE-A2A2 TCGA-EE-A2A6 TCGA-EE-A2GB TCGA-EE-A2GC 
       46.82        78.94        24.43        58.75        47.54        43.23 
TCGA-EE-A2GH TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GK TCGA-EE-A2GL TCGA-EE-A2GT 
      182.01        22.55        89.33        54.71        55.00        19.56 
TCGA-EE-A2GU TCGA-EE-A2M6 TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MG 
       67.13       129.24        19.76        47.28       103.27       103.17 
TCGA-EE-A2MH TCGA-EE-A2MJ TCGA-EE-A2MK TCGA-EE-A2ML TCGA-EE-A2MN TCGA-EE-A2MP 
       16.96        96.23       144.76       203.01        47.54       248.61 
TCGA-EE-A2MQ TCGA-EE-A2MR TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AE 
       43.23       103.56        53.26         4.24        25.84        26.73 
TCGA-ER-A19F TCGA-ER-A19M TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FR-A3YN TCGA-FS-A1Z0 
       26.37        61.05        44.05        79.99        80.48       202.62 
TCGA-FS-A1Z4 TCGA-FS-A1ZB TCGA-FS-A1ZM TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZT 
       28.08        48.85       101.26        74.73        11.41        53.16 
TCGA-FS-A1ZW TCGA-GN-A265 
       49.48        84.72 

$subtype3
TCGA-DA-A1I4 TCGA-DA-A1IA TCGA-EE-A17X TCGA-EE-A17Z TCGA-EE-A182 TCGA-EE-A185 
       35.93        65.92        29.82         8.65        14.70         4.93 
TCGA-EE-A29C TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29L TCGA-EE-A29Q TCGA-EE-A29V 
       47.84        13.97        39.62         2.56        37.35        25.87 
TCGA-EE-A2GM TCGA-EE-A2GN TCGA-EE-A2GR TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AD 
       75.48        90.94        14.30       136.44        41.59         3.68 
TCGA-EE-A3AF TCGA-ER-A19J TCGA-ER-A3PL TCGA-FS-A1YW TCGA-FS-A1YY TCGA-FS-A1Z3 
       13.81         6.41        33.21       216.92       228.59        20.91 
TCGA-FS-A1ZE TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZU TCGA-FS-A1ZY 
       40.27         9.70        47.38        23.93        26.56        27.06 
TCGA-FW-A3I3 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 TCGA-GN-A26D 
        0.20       117.93        64.41        62.76        39.58 

subtype1 subtype2 subtype3 
    7.76     2.70     0.20 
subtype1 subtype2 subtype3 
  345.96   248.61   228.59 
subtype1 subtype2 subtype3 
  61.180   49.185   33.210 
[1] "7.8 - 346.0 (61.2)" "2.7 - 248.6 (49.2)" "0.2 - 228.6 (33.2)"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [19] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [25] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [31] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [91] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [97] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[115] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 15 21
  subtype2 21 48
  subtype3 14 22
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   21
  subtype2   21   48
  subtype3   14   22
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       21       14
  MALE         21       48       22

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 17 14
  subtype2 21 28
  subtype3 14 17
  subtype4 15  6
subtype1 subtype2 subtype3 subtype4 
      31       49       31       21 
subtype1 subtype2 subtype3 subtype4 
      14       28       17        6 
$subtype1
TCGA-DA-A1IB TCGA-EE-A17X TCGA-EE-A183 TCGA-EE-A29M TCGA-EE-A29N TCGA-EE-A29Q 
       23.44        29.82        26.86        44.35        18.58        37.35 
TCGA-EE-A29T TCGA-EE-A29X TCGA-EE-A2A6 TCGA-EE-A2GK TCGA-EE-A2GM TCGA-EE-A2GO 
      345.96        17.92        58.75        54.71        75.48       101.95 
TCGA-EE-A2M6 TCGA-EE-A2MG TCGA-EE-A2MH TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MR 
      129.24       103.17        16.96       167.87        47.54       103.56 
TCGA-EE-A2MS TCGA-EE-A2MT TCGA-EE-A3AC TCGA-EE-A3AE TCGA-ER-A19L TCGA-ER-A19N 
      136.44        41.59        25.84        26.73       131.08        44.05 
TCGA-ER-A1A1 TCGA-FS-A1Z0 TCGA-FS-A1Z4 TCGA-FS-A1ZA TCGA-FS-A1ZE TCGA-FS-A1ZK 
       79.99       202.62        28.08        27.68        40.27        23.93 
TCGA-FS-A1ZU 
       26.56 

$subtype2
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 
      148.31        49.74         2.70        48.89        36.03       194.83 
TCGA-DA-A1I2 TCGA-DA-A1IA TCGA-DA-A1IC TCGA-DA-A3F3 TCGA-EE-A17Z TCGA-EE-A181 
      176.55        65.92        68.09        10.49         8.65        33.73 
TCGA-EE-A185 TCGA-EE-A20F TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L 
        4.93        78.87        13.97        39.62        32.19         2.56 
TCGA-EE-A29R TCGA-EE-A2GC TCGA-EE-A2GI TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN 
       14.47        43.23        22.55        89.33        55.00        90.94 
TCGA-EE-A2GR TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2ME TCGA-EE-A2MJ TCGA-EE-A2MK 
       14.30        19.56        19.76       103.27        96.23       144.76 
TCGA-EE-A2MQ TCGA-EE-A3AA TCGA-EE-A3AD TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19J 
       43.23         4.24         3.68        13.81       138.77         6.41 
TCGA-FS-A1YW TCGA-FS-A1Z3 TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZP 
      216.92        20.91        15.45         9.70        47.38        74.73 
TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZW TCGA-FS-A1ZY TCGA-GN-A264 TCGA-GN-A267 
       11.41        53.16        49.48        27.06       117.93        64.41 
TCGA-GN-A268 
       62.76 

$subtype3
TCGA-DA-A1HY TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1I7 TCGA-EE-A20H TCGA-EE-A29A 
      117.17        35.93       107.34        61.18       168.26        63.32 
TCGA-EE-A29C TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A2A1 TCGA-EE-A2A5 TCGA-EE-A2GD 
       47.84        55.89        25.87        78.94        39.25       314.53 
TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GP TCGA-EE-A2GS TCGA-EE-A2M5 TCGA-EE-A2MC 
      135.91       182.01        13.87        55.59        21.67        61.51 
TCGA-EE-A2MI TCGA-EE-A2MU TCGA-ER-A19D TCGA-ER-A3ET TCGA-FS-A1YX TCGA-FS-A1YY 
      204.62        53.26        12.59        80.32        48.59       228.59 
TCGA-FS-A1Z7 TCGA-FS-A1ZB TCGA-FS-A1ZD TCGA-FS-A1ZM TCGA-FS-A1ZS TCGA-GN-A266 
        7.76        48.85        53.52       101.26       148.77        10.09 
TCGA-GN-A26A 
       32.48 

$subtype4
TCGA-D9-A1JX TCGA-DA-A1I0 TCGA-DA-A3F2 TCGA-DA-A3F5 TCGA-DA-A3F8 TCGA-EE-A20B 
        6.38        20.38        28.60       215.44        15.68       109.64 
TCGA-EE-A29P TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GU TCGA-EE-A2M7 
       56.42        46.82        24.43        47.54        67.13        28.80 
TCGA-EE-A2MD TCGA-EE-A2ML TCGA-EE-A2MP TCGA-EE-A3AB TCGA-EE-A3AG TCGA-ER-A19F 
       47.28       203.01       248.61       122.73        23.47        26.37 
TCGA-FS-A1ZH TCGA-FW-A3I3 TCGA-GN-A265 
       32.71         0.20        84.72 

subtype1 subtype2 subtype3 subtype4 
   16.96     2.56     7.76     0.20 
subtype1 subtype2 subtype3 subtype4 
  345.96   216.92   314.53   248.61 
subtype1 subtype2 subtype3 subtype4 
   44.05    43.23    55.89    46.82 
[1] "17.0 - 346.0 (44.0)" "2.6 - 216.9 (43.2)"  "7.8 - 314.5 (55.9)" 
[4] "0.2 - 248.6 (46.8)" 
  [1] "subtype2" "subtype2" "subtype2" "subtype4" "subtype2" "subtype2"
  [7] "subtype3" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype2"
 [19] "subtype4" "subtype4" "subtype1" "subtype2" "subtype2" "subtype1"
 [25] "subtype2" "subtype4" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype4" "subtype3" "subtype4" "subtype3" "subtype1"
 [49] "subtype4" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype3"
 [67] "subtype1" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype4"
 [79] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype2" "subtype4" "subtype1" "subtype2"
 [91] "subtype1" "subtype2" "subtype4" "subtype2" "subtype3" "subtype4"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype4" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype4"
[127] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype4" "subtype2" "subtype2"
  [7] "subtype3" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype2"
 [19] "subtype4" "subtype4" "subtype1" "subtype2" "subtype2" "subtype1"
 [25] "subtype2" "subtype4" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype4" "subtype3" "subtype4" "subtype3" "subtype1"
 [49] "subtype4" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype3"
 [67] "subtype1" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype4"
 [79] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype2" "subtype4" "subtype1" "subtype2"
 [91] "subtype1" "subtype2" "subtype4" "subtype2" "subtype3" "subtype4"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype4" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype4"
[127] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype4" "subtype2" "subtype2"
  [7] "subtype3" "subtype4" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype2"
 [19] "subtype4" "subtype4" "subtype1" "subtype2" "subtype2" "subtype1"
 [25] "subtype2" "subtype4" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [37] "subtype4" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype4" "subtype3" "subtype4" "subtype3" "subtype1"
 [49] "subtype4" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype3"
 [67] "subtype1" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype4"
 [79] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
 [85] "subtype1" "subtype3" "subtype2" "subtype4" "subtype1" "subtype2"
 [91] "subtype1" "subtype2" "subtype4" "subtype2" "subtype3" "subtype4"
 [97] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[103] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype4" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype4"
[127] "subtype2" "subtype4" "subtype3" "subtype2" "subtype2" "subtype3"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 13 18
  subtype2 18 32
  subtype3  8 23
  subtype4  8 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   18
  subtype2   18   32
  subtype3    8   23
  subtype4    8   14
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       13       18        8        8
  MALE         18       32       23       14

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 12  3
  subtype2 39 49
  subtype3 17 14
subtype1 subtype2 subtype3 
      15       88       31 
subtype1 subtype2 subtype3 
       3       49       14 
$subtype1
TCGA-D9-A1JX TCGA-DA-A1I0 TCGA-DA-A3F2 TCGA-DA-A3F8 TCGA-EE-A20B TCGA-EE-A29P 
        6.38        20.38        28.60        15.68       109.64        56.42 
TCGA-EE-A2A0 TCGA-EE-A2A2 TCGA-EE-A2GB TCGA-EE-A2GU TCGA-EE-A2M7 TCGA-EE-A2ML 
       46.82        24.43        47.54        67.13        28.80       203.01 
TCGA-EE-A3AG TCGA-FW-A3I3 TCGA-GN-A265 
       23.47         0.20        84.72 

$subtype2
TCGA-D9-A148 TCGA-D9-A149 TCGA-D9-A1JW TCGA-DA-A1HV TCGA-DA-A1HW TCGA-DA-A1I1 
      148.31        49.74         2.70        48.89        36.03       194.83 
TCGA-DA-A1I2 TCGA-DA-A1I4 TCGA-DA-A1I5 TCGA-DA-A1IA TCGA-DA-A1IB TCGA-DA-A1IC 
      176.55        35.93       107.34        65.92        23.44        68.09 
TCGA-DA-A3F3 TCGA-EE-A17Z TCGA-EE-A181 TCGA-EE-A183 TCGA-EE-A185 TCGA-EE-A20F 
       10.49         8.65        33.73        26.86         4.93        78.87 
TCGA-EE-A20H TCGA-EE-A29D TCGA-EE-A29E TCGA-EE-A29H TCGA-EE-A29L TCGA-EE-A29M 
      168.26        13.97        39.62        32.19         2.56        44.35 
TCGA-EE-A29N TCGA-EE-A29R TCGA-EE-A29S TCGA-EE-A29V TCGA-EE-A29X TCGA-EE-A2A5 
       18.58        14.47        55.89        25.87        17.92        39.25 
TCGA-EE-A2A6 TCGA-EE-A2GC TCGA-EE-A2GD TCGA-EE-A2GE TCGA-EE-A2GH TCGA-EE-A2GI 
       58.75        43.23       314.53       135.91       182.01        22.55 
TCGA-EE-A2GJ TCGA-EE-A2GL TCGA-EE-A2GN TCGA-EE-A2GP TCGA-EE-A2GR TCGA-EE-A2GS 
       89.33        55.00        90.94        13.87        14.30        55.59 
TCGA-EE-A2GT TCGA-EE-A2M8 TCGA-EE-A2MD TCGA-EE-A2ME TCGA-EE-A2MH TCGA-EE-A2MJ 
       19.56        19.76        47.28       103.27        16.96        96.23 
TCGA-EE-A2MK TCGA-EE-A2MM TCGA-EE-A2MN TCGA-EE-A2MP TCGA-EE-A2MQ TCGA-EE-A2MS 
      144.76       167.87        47.54       248.61        43.23       136.44 
TCGA-EE-A2MT TCGA-EE-A2MU TCGA-EE-A3AA TCGA-EE-A3AC TCGA-EE-A3AD TCGA-EE-A3AE 
       41.59        53.26         4.24        25.84         3.68        26.73 
TCGA-EE-A3AF TCGA-EE-A3AH TCGA-ER-A19F TCGA-ER-A19J TCGA-ER-A19L TCGA-ER-A3ET 
       13.81       138.77        26.37         6.41       131.08        80.32 
TCGA-FS-A1YW TCGA-FS-A1YX TCGA-FS-A1YY TCGA-FS-A1Z0 TCGA-FS-A1Z3 TCGA-FS-A1Z7 
      216.92        48.59       228.59       202.62        20.91         7.76 
TCGA-FS-A1ZB TCGA-FS-A1ZF TCGA-FS-A1ZG TCGA-FS-A1ZJ TCGA-FS-A1ZK TCGA-FS-A1ZM 
       48.85        15.45         9.70        47.38        23.93       101.26 
TCGA-FS-A1ZP TCGA-FS-A1ZR TCGA-FS-A1ZT TCGA-FS-A1ZU TCGA-FS-A1ZW TCGA-FS-A1ZY 
       74.73        11.41        53.16        26.56        49.48        27.06 
TCGA-GN-A262 TCGA-GN-A264 TCGA-GN-A267 TCGA-GN-A268 
      120.46       117.93        64.41        62.76 

$subtype3
TCGA-DA-A1HY TCGA-DA-A1I7 TCGA-DA-A1I8 TCGA-DA-A3F5 TCGA-EE-A17X TCGA-EE-A29A 
      117.17        61.18        53.92       215.44        29.82        63.32 
TCGA-EE-A29C TCGA-EE-A29Q TCGA-EE-A29T TCGA-EE-A2A1 TCGA-EE-A2GK TCGA-EE-A2GM 
       47.84        37.35       345.96        78.94        54.71        75.48 
TCGA-EE-A2GO TCGA-EE-A2M5 TCGA-EE-A2M6 TCGA-EE-A2MC TCGA-EE-A2MG TCGA-EE-A2MI 
      101.95        21.67       129.24        61.51       103.17       204.62 
TCGA-EE-A2MR TCGA-EE-A3AB TCGA-ER-A19D TCGA-ER-A19N TCGA-ER-A1A1 TCGA-FS-A1Z4 
      103.56       122.73        12.59        44.05        79.99        28.08 
TCGA-FS-A1ZA TCGA-FS-A1ZD TCGA-FS-A1ZE TCGA-FS-A1ZH TCGA-FS-A1ZS TCGA-GN-A266 
       27.68        53.52        40.27        32.71       148.77        10.09 
TCGA-GN-A26A 
       32.48 

subtype1 subtype2 subtype3 
    0.20     2.56    10.09 
subtype1 subtype2 subtype3 
  203.01   314.53   345.96 
subtype1 subtype2 subtype3 
   28.80    47.33    61.18 
[1] "0.2 - 203.0 (28.8)"  "2.6 - 314.5 (47.3)"  "10.1 - 346.0 (61.2)"
  [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[133] "subtype2" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[133] "subtype2" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[133] "subtype2" "subtype3"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1  6 10
  subtype2 33 56
  subtype3 10 21
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6   10
  subtype2   33   56
  subtype3   10   21
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        6       33       10
  MALE         10       56       21
           V1.D              V2              V3 
"Time to Death"           "AGE"        "GENDER" 
> q(save="no")
