Clinical Features Time to Death AGE GENDER PATHOLOGY.T PATHOLOGY.N TUMOR.STAGE RADIATIONS.RADIATION.REGIMENINDICATION NUMBERPACKYEARSSMOKED STOPPEDSMOKINGYEAR TOBACCOSMOKINGHISTORYINDICATOR YEAROFTOBACCOSMOKINGONSET nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q t-test_P t-test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q 1p gain 11 (4%) 298 0.77069 1 0.54123 1 0.075863 1 0.34274 1 0.74493 1 0.89142 1 1 1 0.41364 1 0.10609 1 0.017443 1 0.89173 1 1q gain 39 (13%) 270 0.98016 1 0.90835 1 0.56925 1 0.16894 1 0.013747 1 0.17318 1 0.23127 1 0.9382 1 0.21443 1 0.52966 1 0.63996 1 2p gain 30 (10%) 279 0.70429 1 0.9068 1 0.39734 1 0.87313 1 0.79347 1 0.57395 1 0.65848 1 0.017722 1 0.32089 1 0.14603 1 0.84608 1 2q gain 20 (6%) 289 0.7765 1 0.92488 1 0.60614 1 0.84579 1 0.86695 1 0.95295 1 1 1 0.080476 1 0.067336 1 0.056778 1 0.62376 1 3p gain 27 (9%) 282 0.16931 1 0.61322 1 0.36863 1 0.64873 1 0.57585 1 0.78199 1 0.49214 1 0.14653 1 0.17933 1 0.044127 1 0.44856 1 3q gain 102 (33%) 207 0.33386 1 0.37783 1 0.077454 1 0.8541 1 0.35448 1 0.20969 1 0.0030598 1 0.21259 1 0.43152 1 0.96081 1 0.9382 1 4p gain 13 (4%) 296 0.6485 1 0.11171 1 0.75513 1 0.82963 1 0.57016 1 0.39814 1 0.31968 1 0.56751 1 0.14006 1 0.81184 1 0.98306 1 4q gain 9 (3%) 300 0.56991 1 0.79213 1 1 1 0.23003 1 0.57778 1 0.37984 1 1 1 0.6247 1 0.13204 1 0.33301 1 0.50589 1 5p gain 77 (25%) 232 0.73254 1 0.23743 1 0.10337 1 0.97906 1 0.88004 1 0.561 1 0.22436 1 0.34774 1 0.4955 1 0.66478 1 0.28491 1 5q gain 27 (9%) 282 0.40182 1 0.93909 1 0.65448 1 0.68483 1 0.72706 1 0.08601 1 0.348 1 0.10749 1 0.7245 1 0.84643 1 0.62065 1 6p gain 26 (8%) 283 0.45452 1 0.10241 1 1 1 0.78192 1 0.41494 1 0.53986 1 0.03412 1 0.57105 1 0.4726 1 0.76736 1 0.55875 1 6q gain 19 (6%) 290 0.69052 1 0.40716 1 0.60593 1 0.31773 1 0.24094 1 0.14476 1 0.052071 1 0.78 1 0.9791 1 0.92005 1 0.37352 1 7p gain 70 (23%) 239 0.44633 1 0.058574 1 0.44515 1 0.93282 1 0.89219 1 0.8059 1 1 1 0.37696 1 0.17728 1 0.71991 1 0.54322 1 7q gain 44 (14%) 265 0.43981 1 0.79815 1 0.58401 1 0.4106 1 0.40982 1 0.30726 1 1 1 0.11659 1 0.083327 1 0.6959 1 0.64868 1 8p gain 48 (16%) 261 0.017597 1 0.7281 1 0.21573 1 0.22385 1 0.47723 1 0.50331 1 0.58739 1 0.81983 1 0.013345 1 0.033391 1 0.86127 1 8q gain 124 (40%) 185 0.074943 1 0.1324 1 0.89668 1 0.2699 1 0.22198 1 0.49583 1 1 1 0.75512 1 0.11031 1 0.20269 1 0.33673 1 9p gain 37 (12%) 272 0.29593 1 0.22233 1 0.16642 1 0.84327 1 0.21238 1 0.56545 1 0.83893 1 0.15581 1 0.67099 1 0.2246 1 0.71391 1 9q gain 44 (14%) 265 0.45736 1 0.086471 1 0.7162 1 0.31514 1 0.79827 1 0.58599 1 0.4502 1 0.48141 1 0.5474 1 0.15106 1 0.31022 1 10p gain 12 (4%) 297 0.99699 1 0.69062 1 0.52349 1 0.63234 1 0.40729 1 1 1 0.49785 1 0.36866 1 0.27088 1 0.31373 1 0.16326 1 10q gain 6 (2%) 303 0.07362 1 0.47701 1 1 1 0.41741 1 1 1 0.76962 1 0.034046 1 0.50082 1 NA NA 1 1 0.20058 1 11p gain 16 (5%) 293 0.65435 1 0.16857 1 1 1 0.16958 1 0.45719 1 0.31417 1 0.55353 1 0.97313 1 0.032753 1 0.39964 1 0.72806 1 11q gain 16 (5%) 293 0.75207 1 0.21371 1 0.3878 1 0.66548 1 0.93099 1 0.49264 1 0.55353 1 0.91927 1 0.0081031 1 0.035588 1 0.87065 1 12p gain 60 (19%) 249 0.17777 1 0.35178 1 0.19678 1 0.53382 1 0.64314 1 0.90055 1 0.40698 1 0.29014 1 0.23193 1 0.41039 1 0.71887 1 12q gain 25 (8%) 284 0.25865 1 0.95273 1 0.099542 1 0.87466 1 0.75169 1 0.7368 1 0.34474 1 0.21873 1 0.62396 1 0.080973 1 0.26673 1 13q gain 17 (6%) 292 0.68655 1 0.94076 1 0.78495 1 0.46616 1 0.065428 1 0.25788 1 1 1 0.53748 1 0.56467 1 0.75808 1 0.81123 1 14q gain 51 (17%) 258 0.84281 1 0.89322 1 0.3029 1 1 1 0.3286 1 0.62702 1 0.28508 1 0.16957 1 0.0071561 1 0.38646 1 0.6294 1 15q gain 13 (4%) 296 0.8553 1 0.79462 1 0.75513 1 0.057724 1 0.69068 1 0.27146 1 0.19859 1 0.19551 1 0.31667 1 0.55262 1 0.12713 1 16p gain 20 (6%) 289 0.82773 1 0.0021764 1 1 1 1 1 0.017764 1 0.2878 1 0.79092 1 0.74183 1 0.66534 1 0.65747 1 0.14941 1 16q gain 26 (8%) 283 0.85138 1 0.12793 1 1 1 0.71146 1 0.09773 1 0.53224 1 1 1 0.42189 1 0.68051 1 0.68021 1 0.8354 1 17p gain 18 (6%) 291 0.69211 1 0.7728 1 0.17078 1 0.24369 1 0.81408 1 0.31583 1 0.77914 1 0.8666 1 0.14045 1 0.54877 1 0.27117 1 17q gain 20 (6%) 289 0.99588 1 0.7789 1 0.29914 1 0.0099638 1 0.11921 1 0.088785 1 1 1 0.33698 1 0.76936 1 0.023454 1 0.6918 1 18p gain 50 (16%) 259 0.29478 1 0.41401 1 0.00044829 0.386 0.011648 1 0.60343 1 0.028728 1 0.28406 1 0.18721 1 0.25951 1 0.30721 1 0.7636 1 18q gain 20 (6%) 289 0.042233 1 0.72664 1 0.11551 1 0.68879 1 0.71426 1 0.85805 1 1 1 0.36277 1 0.50659 1 0.22401 1 0.46508 1 19p gain 11 (4%) 298 0.033003 1 0.16539 1 1 1 0.42288 1 0.6393 1 0.46972 1 0.73505 1 0.83726 1 0.88467 1 0.61611 1 0.56442 1 19q gain 21 (7%) 288 0.21996 1 0.65469 1 0.80536 1 0.1089 1 0.23798 1 0.33213 1 0.793 1 0.7493 1 0.10187 1 0.26248 1 0.83064 1 20p gain 64 (21%) 245 0.11496 1 0.17263 1 0.52903 1 0.45554 1 0.19003 1 0.24914 1 0.0091965 1 0.24259 1 0.12567 1 0.33326 1 0.96095 1 20q gain 69 (22%) 240 0.51464 1 0.022693 1 0.16811 1 0.45709 1 0.40017 1 0.54828 1 0.006612 1 0.4696 1 0.12379 1 0.22699 1 0.48107 1 21q gain 9 (3%) 300 0.91175 1 0.11554 1 1 1 0.91288 1 0.86335 1 0.48104 1 1 1 0.93369 1 0.99373 1 0.015063 1 0.44374 1 22q gain 38 (12%) 271 0.42282 1 0.19115 1 0.43914 1 0.94604 1 0.20655 1 0.80449 1 1 1 0.060352 1 0.10006 1 0.46227 1 0.31485 1 Xq gain 21 (7%) 288 0.052796 1 0.44314 1 0.45716 1 0.39752 1 0.098991 1 0.9219 1 0.793 1 0.14979 1 0.041432 1 0.8435 1 0.70708 1 1p loss 16 (5%) 293 0.23603 1 0.10413 1 0.57083 1 0.013463 1 0.38481 1 0.30288 1 0.23644 1 0.0055164 1 0.011123 1 0.058253 1 0.51434 1 2p loss 5 (2%) 304 0.28176 1 0.97474 1 0.6157 1 0.52209 1 0.60097 1 0.37612 1 0.59978 1 0.57143 1 0.082545 1 0.50579 1 0.85315 1 2q loss 9 (3%) 300 0.2386 1 0.68792 1 0.70796 1 0.095443 1 0.29625 1 0.11886 1 0.46139 1 0.13487 1 NA NA 0.24603 1 0.83608 1 3p loss 120 (39%) 189 0.0063024 1 0.88346 1 0.0024862 1 0.38417 1 0.053031 1 0.48133 1 1 1 0.024707 1 0.51119 1 0.12739 1 0.050385 1 3q loss 21 (7%) 288 0.28155 1 0.38783 1 0.21007 1 0.35396 1 0.14702 1 0.29125 1 0.6095 1 0.70183 1 0.046473 1 0.38964 1 0.22186 1 4p loss 76 (25%) 233 0.12927 1 0.4382 1 0.18389 1 0.18882 1 0.53511 1 0.10919 1 0.87924 1 0.084903 1 0.0019579 1 0.0012827 1 0.60164 1 4q loss 50 (16%) 259 0.92161 1 0.66436 1 1 1 0.27063 1 0.61112 1 0.44698 1 0.59097 1 0.19256 1 0.058841 1 0.37205 1 0.61337 1 5p loss 10 (3%) 299 0.42362 1 0.20659 1 0.46864 1 0.61211 1 0.71471 1 0.24713 1 0.1268 1 0.81973 1 0.56178 1 0.31633 1 0.59848 1 5q loss 61 (20%) 248 0.33645 1 0.20085 1 0.52062 1 0.30186 1 0.57882 1 0.28757 1 0.86843 1 0.005207 1 0.97898 1 0.043557 1 0.82503 1 6p loss 19 (6%) 290 0.3466 1 0.66652 1 0.29959 1 0.0014404 1 0.61125 1 0.11668 1 0.42464 1 0.22921 1 0.29996 1 0.12402 1 0.94322 1 6q loss 21 (7%) 288 0.77821 1 0.16358 1 0.45716 1 0.016764 1 0.56355 1 0.2164 1 1 1 0.84046 1 0.46344 1 0.65144 1 0.77266 1 7p loss 5 (2%) 304 0.77182 1 0.49846 1 1 1 0.71409 1 1 1 1 1 1 1 0.25599 1 0.15557 1 0.033912 1 0.82745 1 7q loss 9 (3%) 300 0.85107 1 0.80122 1 0.70796 1 0.26858 1 0.57778 1 0.73037 1 0.46139 1 0.46051 1 0.54458 1 0.83052 1 0.93816 1 8p loss 65 (21%) 244 0.037449 1 0.90283 1 1 1 0.01018 1 0.95069 1 0.16806 1 0.74744 1 0.073931 1 0.70046 1 0.78201 1 0.74377 1 8q loss 6 (2%) 303 0.065598 1 0.74123 1 0.19496 1 0.91288 1 0.29625 1 0.48104 1 0.63822 1 0.21652 1 NA NA 0.60525 1 0.65278 1 9p loss 84 (27%) 225 0.35606 1 0.30089 1 0.31542 1 0.80578 1 0.93443 1 0.48638 1 1 1 0.0071636 1 0.014533 1 0.0096164 1 0.87713 1 9q loss 29 (9%) 280 0.41055 1 0.30503 1 1 1 0.8862 1 0.80222 1 0.30937 1 0.65662 1 0.081085 1 0.74489 1 0.19779 1 0.5981 1 10p loss 45 (15%) 264 0.22654 1 0.31878 1 0.28031 1 0.03332 1 0.65162 1 0.40758 1 0.71104 1 0.08441 1 0.29018 1 0.41239 1 0.78123 1 10q loss 25 (8%) 284 0.39882 1 0.58323 1 0.099542 1 0.29494 1 0.80223 1 0.36271 1 0.63567 1 0.53636 1 0.43622 1 0.23776 1 0.17238 1 11p loss 39 (13%) 270 0.38406 1 0.88513 1 0.441 1 0.65529 1 0.040971 1 0.088835 1 0.55604 1 0.38803 1 0.020454 1 0.096893 1 0.54607 1 11q loss 60 (19%) 249 0.79228 1 0.38681 1 0.022825 1 0.97506 1 0.27665 1 0.36058 1 0.045087 1 0.739 1 0.81791 1 0.74422 1 0.20302 1 12p loss 12 (4%) 297 0.13104 1 0.012897 1 0.1911 1 0.055363 1 0.039676 1 0.24791 1 0.078612 1 0.1371 1 0.6304 1 0.64931 1 0.0070016 1 12q loss 8 (3%) 301 0.64049 1 0.40257 1 0.6878 1 1 1 0.25432 1 1 1 0.41167 1 0.61559 1 NA NA 0.45189 1 0.43225 1 13q loss 61 (20%) 248 0.59724 1 0.40615 1 0.078861 1 0.70105 1 0.72955 1 0.37299 1 0.61904 1 0.11582 1 0.3726 1 0.070338 1 0.33604 1 14q loss 15 (5%) 294 0.72752 1 0.97623 1 0.37085 1 0.1735 1 0.57016 1 0.36829 1 0.53768 1 0.65515 1 0.61066 1 0.83987 1 0.61407 1 15q loss 23 (7%) 286 0.57596 1 0.61035 1 1 1 0.84342 1 0.46955 1 0.65706 1 0.80589 1 0.83784 1 0.0011849 1 0.48512 1 0.77551 1 16p loss 11 (4%) 298 0.27774 1 0.53938 1 0.73325 1 0.29519 1 0.32492 1 0.62968 1 1 1 0.39035 1 0.33631 1 0.17852 1 0.13334 1 16q loss 25 (8%) 284 0.23112 1 0.80273 1 0.099542 1 0.69209 1 0.94076 1 0.59985 1 0.46659 1 0.82449 1 0.73564 1 0.49156 1 0.29581 1 17p loss 43 (14%) 266 0.56732 1 0.051082 1 0.097237 1 0.17467 1 0.77324 1 0.099619 1 0.44504 1 0.27673 1 0.31342 1 0.27408 1 0.33776 1 17q loss 4 (1%) 305 0.60308 1 0.7077 1 0.57762 1 NA NA NA NA NA NA 0.047414 1 0.34235 1 0.0022615 1 0.24576 1 0.66955 1 18p loss 29 (9%) 280 0.87831 1 0.40489 1 0.38237 1 0.79611 1 0.29763 1 0.92889 1 0.65662 1 0.70658 1 0.18758 1 0.66896 1 0.32408 1 18q loss 86 (28%) 223 0.057828 1 0.050827 1 0.25414 1 0.83171 1 0.46536 1 0.74283 1 0.88291 1 0.16507 1 0.00082916 0.714 0.040173 1 0.19072 1 19p loss 26 (8%) 283 0.010846 1 0.73313 1 0.019934 1 0.17791 1 0.10582 1 0.073294 1 0.63742 1 0.14157 1 0.41257 1 0.32758 1 0.10863 1 19q loss 19 (6%) 290 0.059707 1 0.4797 1 0.11316 1 0.0082822 1 0.12838 1 0.020936 1 0.78947 1 0.15991 1 0.0013936 1 0.029906 1 0.56336 1 20p loss 20 (6%) 289 0.76122 1 0.17495 1 0.29914 1 0.62699 1 0.42376 1 0.58436 1 0.79092 1 0.48597 1 0.29209 1 0.32341 1 0.2852 1 20q loss 9 (3%) 300 0.18946 1 0.76054 1 0.12013 1 0.51865 1 1 1 0.85152 1 1 1 0.3541 1 0.97695 1 0.73856 1 0.29753 1 21q loss 53 (17%) 256 0.77561 1 0.076955 1 0.088824 1 0.35463 1 0.0097428 1 1 1 1 1 0.088784 1 0.17292 1 0.90706 1 0.67299 1 22q loss 24 (8%) 285 0.17671 1 0.96787 1 0.33876 1 0.48713 1 0.16289 1 0.25357 1 0.80725 1 0.33432 1 0.7263 1 0.64211 1 0.49814 1 Xq loss 8 (3%) 301 0.53055 1 0.73964 1 0.21972 1 0.62287 1 0.24474 1 0.1644 1 1 1 0.2207 1 0.30869 1 0.60308 1 0.31884 1