Clinical Features	Time to Death		AGE		GENDER		KARNOFSKY.PERFORMANCE.SCORE		HISTOLOGICAL.TYPE		PATHOLOGY.T		PATHOLOGY.N		PATHOLOGICSPREAD(M)		TUMOR.STAGE		RADIATIONS.RADIATION.REGIMENINDICATION		NUMBERPACKYEARSSMOKED		STOPPEDSMOKINGYEAR		TOBACCOSMOKINGHISTORYINDICATOR		YEAROFTOBACCOSMOKINGONSET	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q
1p gain	41 (13%)	286	0.88975	1	0.0010356	1	0.86865	1	0.49174	1	0.98301	1	0.70082	1	0.00071406	0.752	0.651	1	0.00026865	0.283	0.48792	1	0.82886	1	0.91316	1	0.47808	1	0.7345	1
1q gain	127 (39%)	200	0.86163	1	0.37211	1	0.73395	1	0.51202	1	0.52831	1	0.21038	1	0.026764	1	0.2868	1	0.026071	1	0.81559	1	0.94057	1	0.82205	1	0.42966	1	0.63922	1
2p gain	41 (13%)	286	0.081649	1	0.054814	1	0.043131	1	0.85091	1	0.68282	1	0.10796	1	0.76646	1	0.092563	1	0.22013	1	1	1	0.56279	1	0.061662	1	0.073576	1	0.64505	1
2q gain	33 (10%)	294	0.18767	1	0.20883	1	0.27381	1	NA	NA	0.47188	1	0.41594	1	0.93172	1	0.066576	1	0.27763	1	0.70583	1	0.55303	1	0.99715	1	0.17353	1	0.85992	1
3p gain	10 (3%)	317	0.11677	1	0.60965	1	0.75971	1	NA	NA	0.96439	1	0.068995	1	0.33618	1	0.57655	1	0.25684	1	0.47285	1	0.75432	1	0.49531	1	0.4004	1	0.22827	1
3q gain	19 (6%)	308	0.15737	1	0.54766	1	1	1	NA	NA	0.99045	1	0.65918	1	0.14077	1	0.76213	1	0.37058	1	0.32648	1	0.84843	1	0.33612	1	0.43437	1	0.055875	1
4p gain	23 (7%)	304	0.6712	1	0.018298	1	0.28379	1	NA	NA	0.78134	1	0.64837	1	1	1	0.07153	1	0.311	1	1	1	0.058641	1	0.25155	1	0.31827	1	0.93509	1
4q gain	7 (2%)	320	0.57733	1	0.86864	1	0.25122	1	NA	NA	0.99526	1	0.23703	1	0.34421	1	0.18262	1	0.62165	1	0.35983	1	0.043886	1	0.78074	1	0.53128	1	0.024133	1
5p gain	124 (38%)	203	0.69358	1	0.14978	1	1	1	0.78616	1	0.38571	1	0.82226	1	0.67925	1	0.53351	1	0.58094	1	0.15168	1	0.082992	1	0.035962	1	0.44324	1	0.82709	1
5q gain	39 (12%)	288	0.95816	1	0.71644	1	0.39557	1	NA	NA	0.78192	1	0.66714	1	0.84775	1	0.24685	1	0.48819	1	0.074594	1	0.66234	1	0.80719	1	0.18641	1	0.31702	1
6p gain	47 (14%)	280	0.81754	1	0.93103	1	0.52818	1	0.90175	1	0.58439	1	0.41261	1	0.22357	1	0.84667	1	0.92649	1	0.74996	1	0.96796	1	0.86093	1	0.41528	1	0.098837	1
6q gain	11 (3%)	316	0.55876	1	0.25957	1	0.014201	1	NA	NA	0.98572	1	0.45448	1	0.6785	1	0.43416	1	0.38981	1	1	1	0.89397	1	0.77412	1	0.065748	1	0.45336	1
7p gain	113 (35%)	214	0.23722	1	0.17568	1	0.64166	1	0.19258	1	0.53503	1	0.12673	1	0.015698	1	0.19909	1	0.063875	1	0.46907	1	0.67413	1	0.70193	1	0.47261	1	0.97649	1
7q gain	81 (25%)	246	0.87784	1	0.052494	1	0.44047	1	0.8196	1	0.61364	1	0.40187	1	0.25151	1	0.081968	1	0.056106	1	0.59548	1	0.96545	1	0.73132	1	0.89176	1	0.79672	1
8p gain	39 (12%)	288	0.41677	1	0.00097025	1	0.49373	1	NA	NA	0.81364	1	0.21112	1	0.93707	1	0.42884	1	0.84628	1	0.71837	1	0.52416	1	0.11566	1	0.035718	1	0.040295	1
8q gain	101 (31%)	226	0.84172	1	0.00096155	1	0.3367	1	0.32137	1	0.53733	1	0.41096	1	0.35365	1	0.38449	1	0.4941	1	0.62748	1	0.52441	1	0.19084	1	0.072464	1	0.030964	1
9p gain	8 (2%)	319	0.2004	1	0.46089	1	0.47552	1	NA	NA	0.73074	1	0.62856	1	0.45496	1	1	1	0.80813	1	1	1	0.26934	1	0.03085	1	0.42598	1	0.51958	1
9q gain	4 (1%)	323	0.05908	1	0.28761	1	1	1	NA	NA	0.99562	1	1	1	1	1	1	1	0.85297	1	1	1	0.63359	1	0.27425	1	1	1	0.75834	1
10p gain	35 (11%)	292	0.9758	1	0.37076	1	0.1526	1	0.81966	1	0.56367	1	0.52969	1	0.19639	1	0.90087	1	0.44278	1	0.70792	1	0.0437	1	0.063552	1	0.002155	1	0.51156	1
10q gain	20 (6%)	307	0.8867	1	0.95735	1	0.2459	1	NA	NA	0.34859	1	0.16659	1	0.1755	1	0.32265	1	0.15492	1	1	1	0.13207	1	0.51305	1	0.059214	1	0.27532	1
11p gain	26 (8%)	301	0.71544	1	0.05938	1	0.41406	1	0.72028	1	0.7109	1	0.47575	1	0.43639	1	0.92637	1	0.29334	1	0.66628	1	0.36635	1	0.40012	1	0.80577	1	0.89414	1
11q gain	37 (11%)	290	0.35875	1	5.134e-05	0.0544	0.16132	1	0.75146	1	0.7744	1	0.32135	1	0.4187	1	0.58007	1	0.16541	1	0.26191	1	0.19065	1	0.0016619	1	0.051491	1	0.10979	1
12p gain	41 (13%)	286	0.84557	1	0.0025391	1	0.40765	1	NA	NA	0.55823	1	0.28825	1	0.10569	1	1	1	0.078935	1	1	1	0.60841	1	0.087912	1	0.062552	1	0.10436	1
12q gain	36 (11%)	291	0.6941	1	0.0042788	1	0.47973	1	NA	NA	0.47975	1	0.30007	1	0.34398	1	0.7193	1	0.23385	1	0.7098	1	0.035579	1	0.10421	1	0.042066	1	0.0060049	1
13q gain	15 (5%)	312	0.58785	1	0.56372	1	1	1	NA	NA	0.98009	1	0.083365	1	0.41101	1	0.1113	1	0.45172	1	1	1	0.76678	1	0.39481	1	0.35448	1	0.75045	1
14q gain	37 (11%)	290	0.46074	1	0.47368	1	0.22131	1	0.90089	1	0.31106	1	0.4338	1	0.19012	1	0.5004	1	0.53839	1	0.14515	1	0.34532	1	0.87658	1	0.72702	1	0.51267	1
15q gain	10 (3%)	317	0.28353	1	0.40204	1	1	1	NA	NA	0.10808	1	0.62482	1	0.26589	1	0.43133	1	0.17591	1	1	1	0.80653	1	0.54951	1	0.13626	1	0.93148	1
16p gain	44 (13%)	283	0.54725	1	0.14828	1	1	1	0.31425	1	0.70025	1	0.60049	1	0.41631	1	0.35358	1	0.35119	1	1	1	0.31602	1	0.10685	1	0.019888	1	0.77923	1
16q gain	30 (9%)	297	0.74303	1	0.11392	1	0.44196	1	0.29227	1	0.28403	1	0.83639	1	0.18283	1	0.2	1	0.1839	1	0.23567	1	0.047809	1	0.042301	1	0.39132	1	0.35341	1
17p gain	18 (6%)	309	0.74878	1	0.86135	1	0.22325	1	0.26453	1	0.38373	1	0.78137	1	0.69224	1	0.35305	1	0.501	1	0.017947	1	0.077479	1	0.38689	1	0.64136	1	0.92909	1
17q gain	55 (17%)	272	0.26594	1	0.87866	1	1	1	0.43679	1	0.3622	1	0.060295	1	0.88879	1	0.03239	1	0.09072	1	0.056211	1	0.037513	1	0.16763	1	0.38865	1	0.41404	1
18p gain	28 (9%)	299	0.25247	1	0.29404	1	0.23395	1	NA	NA	0.10905	1	0.86762	1	0.36807	1	0.22089	1	0.95005	1	1	1	0.061797	1	0.11038	1	0.43216	1	0.934	1
18q gain	17 (5%)	310	0.66554	1	0.18799	1	0.61902	1	NA	NA	0.78702	1	0.74572	1	0.55954	1	0.82227	1	0.95412	1	1	1	0.65567	1	0.059441	1	0.63366	1	0.22186	1
19p gain	6 (2%)	321	0.84137	1	0.47945	1	0.69313	1	NA	NA	0.99854	1	0.64663	1	0.16912	1	0.39294	1	0.33566	1	0.3173	1	0.92151	1	0.46365	1	1	1	0.3981	1
19q gain	16 (5%)	311	0.96335	1	0.57077	1	0.30821	1	NA	NA	0.94553	1	0.10821	1	0.81312	1	0.50114	1	0.80156	1	1	1	0.82351	1	0.014391	1	0.18261	1	0.26846	1
20p gain	46 (14%)	281	0.69991	1	0.61455	1	0.75061	1	0.56077	1	0.7872	1	0.84005	1	0.48339	1	0.70086	1	0.31615	1	1	1	0.55211	1	0.84359	1	0.027764	1	0.53603	1
20q gain	57 (17%)	270	0.60395	1	0.2797	1	0.24285	1	0.14077	1	0.57235	1	0.53255	1	0.77348	1	0.53343	1	0.69444	1	0.21941	1	0.040268	1	0.58479	1	0.018874	1	0.58966	1
21q gain	29 (9%)	298	0.52726	1	0.53174	1	0.24625	1	NA	NA	0.70067	1	0.52452	1	0.53486	1	0.52175	1	0.94137	1	1	1	0.78882	1	0.050224	1	0.0066372	1	0.8003	1
22q gain	14 (4%)	313	0.45977	1	0.14365	1	1	1	NA	NA	0.32026	1	0.38748	1	0.11933	1	1	1	0.53465	1	0.59434	1	0.51173	1	0.68115	1	0.6823	1	0.40042	1
Xq gain	15 (5%)	312	0.16531	1	0.027073	1	0.59992	1	NA	NA	0.58791	1	0.35132	1	0.86477	1	0.78532	1	0.91309	1	1	1	0.42833	1	0.99183	1	0.1716	1	0.043838	1
1p loss	26 (8%)	301	0.20723	1	0.67394	1	0.21967	1	NA	NA	0.37653	1	0.57425	1	0.91582	1	0.33971	1	0.2919	1	0.20523	1	0.17234	1	0.067152	1	0.14287	1	0.69208	1
1q loss	9 (3%)	318	5.7906e-05	0.0613	0.73073	1	0.73651	1	NA	NA	0.0016877	1	0.79118	1	0.087013	1	1	1	0.32869	1	0.43747	1	0.34047	1	0.040243	1	0.69493	1	NA	NA
2p loss	4 (1%)	323	0.187	1	0.31274	1	1	1	NA	NA	0.81021	1	1	1	1	1	1	1	0.60214	1	1	1	0.46004	1	NA	NA	0.26696	1	NA	NA
3p loss	66 (20%)	261	0.90481	1	0.81428	1	1	1	0.013447	1	0.85869	1	0.47372	1	0.30598	1	0.21641	1	0.0091053	1	1	1	0.77039	1	0.76495	1	0.033071	1	0.25159	1
3q loss	38 (12%)	289	0.93721	1	0.97084	1	0.86283	1	0.016026	1	0.85163	1	0.11556	1	0.48228	1	0.62746	1	0.1953	1	1	1	0.16738	1	0.45546	1	0.51482	1	0.81515	1
4p loss	29 (9%)	298	0.44966	1	0.013611	1	0.32899	1	0.6462	1	0.5479	1	0.10997	1	0.23097	1	0.6737	1	0.69621	1	0.40352	1	0.82416	1	0.036927	1	0.068145	1	0.45066	1
4q loss	34 (10%)	293	0.52242	1	0.050869	1	0.018273	1	0.88029	1	0.77733	1	0.11052	1	0.0042937	1	0.50833	1	0.036396	1	0.14137	1	0.46028	1	0.35822	1	0.040548	1	0.88025	1
5p loss	11 (3%)	316	0.78633	1	0.9403	1	0.23421	1	NA	NA	0.086276	1	0.8406	1	0.44916	1	0.43416	1	0.66489	1	1	1	0.48537	1	0.00069079	0.728	0.35245	1	0.7789	1
5q loss	44 (13%)	283	0.59348	1	0.17919	1	0.052035	1	NA	NA	0.052884	1	0.95391	1	0.048472	1	0.90936	1	0.30825	1	0.49412	1	0.25413	1	0.047946	1	0.096574	1	0.97531	1
6p loss	30 (9%)	297	0.92925	1	0.081587	1	0.24799	1	NA	NA	0.53463	1	0.4933	1	0.43928	1	0.22454	1	0.35891	1	0.4112	1	0.31391	1	0.29457	1	0.28642	1	0.24164	1
6q loss	73 (22%)	254	0.81378	1	0.25557	1	0.89395	1	0.030468	1	0.57664	1	0.19238	1	0.32226	1	0.5962	1	0.3415	1	0.40857	1	0.16228	1	0.98197	1	0.59463	1	0.36164	1
7p loss	11 (3%)	316	0.8268	1	0.25496	1	1	1	NA	NA	0.27028	1	0.89167	1	0.6785	1	0.47421	1	0.54163	1	0.50611	1	0.59337	1	0.81659	1	0.30989	1	0.31314	1
7q loss	12 (4%)	315	0.70453	1	0.2074	1	0.55728	1	NA	NA	9.8938e-05	0.105	0.90162	1	1	1	1	1	0.95971	1	0.53737	1	0.19219	1	0.11555	1	0.12346	1	NA	NA
8p loss	89 (27%)	238	0.71888	1	0.79562	1	1	1	0.18927	1	0.081878	1	0.21326	1	0.93594	1	0.73073	1	0.83349	1	0.60682	1	0.35134	1	0.15918	1	0.013398	1	0.23221	1
8q loss	12 (4%)	315	0.31647	1	0.92024	1	0.77462	1	NA	NA	0.016469	1	1	1	0.91388	1	0.64348	1	0.89036	1	1	1	0.21982	1	NA	NA	0.040292	1	NA	NA
9p loss	99 (30%)	228	0.0058528	1	0.23542	1	0.14769	1	0.97519	1	0.39819	1	0.1841	1	0.0074353	1	0.90516	1	0.038049	1	1	1	0.8813	1	0.15141	1	0.085511	1	0.60303	1
9q loss	84 (26%)	243	0.20296	1	0.99463	1	0.89889	1	0.88168	1	0.39077	1	0.16898	1	0.11455	1	0.69457	1	0.23173	1	0.427	1	0.44714	1	0.95013	1	0.028499	1	0.7412	1
10p loss	26 (8%)	301	0.30107	1	0.29591	1	0.15151	1	NA	NA	0.22544	1	0.84214	1	0.37658	1	0.79627	1	0.92873	1	0.38621	1	0.66773	1	0.78121	1	0.092424	1	0.42476	1
10q loss	28 (9%)	299	0.33636	1	0.12362	1	0.84462	1	NA	NA	1.2309e-05	0.013	0.26376	1	0.09208	1	0.87155	1	0.13109	1	0.23748	1	0.11616	1	0.4679	1	0.2244	1	0.96074	1
11p loss	25 (8%)	302	0.51034	1	0.0032161	1	0.29928	1	NA	NA	0.68087	1	1	1	0.17673	1	0.041638	1	0.04637	1	1	1	0.19291	1	0.20779	1	0.046196	1	0.0012078	1
11q loss	20 (6%)	307	0.42403	1	0.5515	1	0.81734	1	0.71536	1	0.25591	1	0.69028	1	0.28592	1	0.015088	1	0.41739	1	0.35008	1	0.033465	1	0.45794	1	0.48719	1	0.21039	1
12p loss	29 (9%)	298	0.35414	1	0.81605	1	1	1	0.5414	1	0.64139	1	0.32657	1	0.88693	1	0.28889	1	0.57846	1	0.69411	1	0.7329	1	0.62676	1	0.025004	1	0.073597	1
12q loss	19 (6%)	308	0.067876	1	0.75587	1	0.63607	1	NA	NA	0.53609	1	0.34424	1	0.43786	1	0.51167	1	0.38854	1	0.61743	1	0.78775	1	0.56851	1	0.15177	1	0.29846	1
13q loss	74 (23%)	253	0.13401	1	0.34048	1	0.89526	1	0.018123	1	0.14327	1	0.52587	1	0.16066	1	0.34583	1	0.16205	1	0.78492	1	0.60564	1	0.63302	1	0.11327	1	0.2289	1
14q loss	34 (10%)	293	0.63025	1	0.31598	1	0.58867	1	0.81415	1	0.29398	1	0.40075	1	0.90094	1	0.027357	1	0.90691	1	0.4492	1	0.0647	1	0.16123	1	0.7552	1	0.34763	1
15q loss	70 (21%)	257	0.80243	1	0.044843	1	0.13745	1	0.74551	1	0.15034	1	0.96779	1	0.94272	1	0.939	1	0.9253	1	0.77801	1	0.58216	1	0.71068	1	0.34539	1	0.54908	1
16p loss	26 (8%)	301	0.97606	1	0.16888	1	0.41406	1	NA	NA	0.55825	1	0.78017	1	0.83518	1	0.012257	1	0.091661	1	0.20523	1	0.74833	1	0.39374	1	0.095729	1	0.64319	1
16q loss	46 (14%)	281	0.096872	1	0.23319	1	0.75061	1	0.7461	1	0.046643	1	0.65323	1	0.28823	1	0.18124	1	0.13644	1	1	1	0.81468	1	0.76582	1	0.21846	1	0.38906	1
17p loss	82 (25%)	245	0.80959	1	0.46834	1	0.7989	1	0.10018	1	0.86467	1	0.57249	1	0.93271	1	0.73783	1	0.71597	1	0.42485	1	0.23	1	0.063029	1	0.072105	1	0.11191	1
17q loss	13 (4%)	314	0.35651	1	0.47017	1	0.77832	1	NA	NA	0.5018	1	0.40592	1	0.38948	1	0.66927	1	0.4355	1	1	1	0.030048	1	0.1236	1	0.23186	1	0.11821	1
18p loss	55 (17%)	272	0.54964	1	0.036296	1	0.29883	1	0.0053138	1	0.12965	1	0.030686	1	0.32392	1	0.043737	1	0.0093219	1	0.21756	1	0.00022588	0.239	0.50765	1	0.33669	1	0.016469	1
18q loss	84 (26%)	243	0.025231	1	0.3093	1	0.70303	1	0.4522	1	0.25715	1	0.046964	1	0.29491	1	0.28365	1	0.0079332	1	0.11707	1	0.17511	1	0.36217	1	0.23161	1	0.31171	1
19p loss	90 (28%)	237	0.049073	1	0.30275	1	0.04664	1	0.64908	1	0.6815	1	0.2117	1	0.052865	1	0.10029	1	0.25325	1	1	1	0.44851	1	0.34268	1	0.12604	1	0.36235	1
19q loss	51 (16%)	276	0.14714	1	0.34672	1	0.87847	1	0.0045599	1	0.08575	1	0.43456	1	0.57536	1	0.073236	1	0.39964	1	0.5305	1	0.25447	1	0.70146	1	0.32584	1	0.30179	1
20p loss	46 (14%)	281	0.17157	1	0.61894	1	1	1	NA	NA	0.67814	1	0.14796	1	0.034762	1	0.19535	1	0.13139	1	1	1	0.81409	1	0.42171	1	0.49822	1	0.041554	1
20q loss	17 (5%)	310	0.52297	1	0.48328	1	1	1	NA	NA	0.37855	1	0.93808	1	0.76837	1	0.19444	1	0.62128	1	1	1	0.75209	1	0.42447	1	0.36047	1	0.29865	1
21q loss	47 (14%)	280	0.90535	1	0.99079	1	0.039499	1	0.1158	1	0.5848	1	0.64725	1	0.60374	1	0.57385	1	0.41621	1	0.50641	1	0.16015	1	0.025028	1	0.0098844	1	0.97405	1
22q loss	71 (22%)	256	0.793	1	0.2325	1	0.22535	1	0.58951	1	0.82897	1	0.91585	1	0.85621	1	0.27333	1	0.94183	1	0.16041	1	0.35986	1	0.86981	1	0.007187	1	0.251	1
Xq loss	8 (2%)	319	0.27222	1	0.25224	1	0.14734	1	NA	NA	0.01163	1	0.10481	1	0.8593	1	0.79758	1	0.30162	1	0.079762	1	0.49089	1	0.26881	1	0.72011	1	0.86545	1