| Pipeline | NotRunnable | Runnable | InProcess | Successful | Unsuccessful |
|---|
| 1 | TB-Aggregate_Gene_Status | 0 | 0 | 0 | 1 | 0 |
| 2 | TB-Aggregate_Molecular_Subtype_Clusters | 0 | 0 | 0 | 1 | 0 |
| 3 | TB-CoMut2.0 | 0 | 0 | 0 | 1 | 0 |
| 4 | TB-CoMutCV | 0 | 0 | 0 | 0 | 1 |
| 5 | TB-CopyNumber_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 6 | TB-CopyNumber_Gistic2 | 0 | 0 | 0 | 1 | 0 |
| 7 | TB-CopyNumber_Gistic2_Analysis | 0 | 0 | 0 | 1 | 0 |
| 8 | TB-CopyNumber_Gistic2_Postprocess_Focal | 0 | 0 | 0 | 1 | 0 |
| 9 | TB-Correlate_Clinical_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 10 | TB-Correlate_Clinical_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 11 | TB-Correlate_Clinical_vs_Methylation | 0 | 0 | 0 | 1 | 0 |
| 12 | TB-Correlate_Clinical_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 13 | TB-Correlate_Clinical_vs_miRseq | 0 | 0 | 0 | 1 | 0 |
| 14 | TB-Correlate_Clinical_vs_Molecular_Signatures | 0 | 0 | 0 | 1 | 0 |
| 15 | TB-Correlate_Clinical_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 16 | TB-Correlate_Clinical_vs_mRNAseq | 0 | 0 | 0 | 1 | 0 |
| 17 | TB-Correlate_Clinical_vs_Mutation | 0 | 0 | 0 | 1 | 0 |
| 18 | TB-Correlate_Clinical_vs_RPPA | 1 | 0 | 0 | 0 | 0 |
| 19 | TB-Correlate_CopyNumber_vs_miR | 1 | 0 | 0 | 0 | 0 |
| 20 | TB-Correlate_CopyNumber_vs_mRNA | 1 | 0 | 0 | 0 | 0 |
| 21 | TB-Correlate_CopyNumber_vs_mRNAseq | 0 | 0 | 0 | 1 | 0 |
| 22 | TB-Correlate_Methylation_vs_mRNA | 0 | 0 | 0 | 1 | 0 |
| 23 | TB-Correlate_molecularSubtype_vs_CopyNumber_Arm | 0 | 0 | 0 | 1 | 0 |
| 24 | TB-Correlate_molecularSubtype_vs_CopyNumber_Focal | 0 | 0 | 0 | 1 | 0 |
| 25 | TB-Correlate_molecularSubtype_vs_Mutation | 0 | 0 | 0 | 1 | 0 |
| 26 | TB-GenerateStickFigures2.0 | 0 | 0 | 0 | 1 | 0 |
| 27 | TB-GenerateStickFiguresCV | 0 | 1 | 0 | 0 | 0 |
| 28 | TB-GenerateStickFiguresS2N | 0 | 0 | 0 | 1 | 0 |
| 29 | TB-Hotnet | 0 | 0 | 0 | 1 | 0 |
| 30 | TB-Hotnet_preprocess | 0 | 0 | 0 | 1 | 0 |
| 31 | TB-Methylation_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 32 | TB-Methylation_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 33 | TB-miR_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 34 | TB-miR_Clustering_Consensus | 1 | 0 | 0 | 0 | 0 |
| 35 | TB-miR_FindDirectTargets | 1 | 0 | 0 | 0 | 0 |
| 36 | TB-miRseq_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 37 | TB-miRseq_Clustering_Consensus | 0 | 0 | 0 | 1 | 0 |
| 38 | TB-miRseq_Preprocess | 0 | 0 | 0 | 1 | 0 |
| 39 | TB-mRNA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 40 | TB-mRNA_Clustering_Consensus | 1 | 0 | 0 | 0 | 0 |
| 41 | TB-mRNA_Preprocess_Median | 1 | 0 | 0 | 0 | 0 |
| 42 | TB-mRNAseq_Clustering_CNMF | 0 | 0 | 0 | 1 | 0 |
| 43 | TB-mRNAseq_Clustering_Consensus | 0 | 0 | 0 | 1 | 0 |
| 44 | TB-Mutation_Assessor | 0 | 0 | 0 | 1 | 0 |
| 45 | TB-MutSigNozzleReport2.0 | 0 | 0 | 0 | 1 | 0 |
| 46 | TB-MutSigNozzleReportCV | 0 | 1 | 0 | 0 | 0 |
| 47 | TB-MutSigNozzleReportS2N | 0 | 0 | 0 | 1 | 0 |
| 48 | TB-MutSigPreprocess2.0 | 0 | 0 | 0 | 1 | 0 |
| 49 | TB-MutSigRun2.0 | 0 | 0 | 0 | 1 | 0 |
| 50 | TB-MutSigRunCV | 0 | 0 | 0 | 1 | 0 |
| 51 | TB-MutSigRunS2N | 0 | 0 | 0 | 1 | 0 |
| 52 | TB-Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 53 | TB-Paradigm_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 54 | TB-Paradigm_Prepare_mRNA | 1 | 0 | 0 | 0 | 0 |
| 55 | TB-Paradigm_Prepare_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 56 | TB-Paradigm_Prepare_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 57 | TB-Paradigm_Prepare_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
| 58 | TB-Paradigm_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 59 | TB-ParadigmPreprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 60 | TB-Paradigm_Preprocess_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 61 | TB-Paradigm_Preprocess_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 62 | TB-ParadigmPreprocess_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 63 | TB-Paradigm_Preprocess_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
| 64 | TB-Paradigm_Report_Preprocess_mRNA | 1 | 0 | 0 | 0 | 0 |
| 65 | TB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber | 1 | 0 | 0 | 0 | 0 |
| 66 | TB-Paradigm_Report_Preprocess_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 67 | TB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
| 68 | TB-Paradigm_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 69 | TB-Paradigm_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
| 70 | TB-Pathway_FindEnrichedGenes | 1 | 0 | 0 | 0 | 0 |
| 71 | TB-Pathway_Hotnet | 0 | 0 | 0 | 1 | 0 |
| 72 | TB-Pathway_Paradigm_mRNA | 1 | 0 | 0 | 0 | 0 |
| 73 | TB-Pathway_Paradigm_mRNA_And_Copy_Number | 1 | 0 | 0 | 0 | 0 |
| 74 | TB-Pathway_Paradigm_RNASeq | 0 | 0 | 0 | 1 | 0 |
| 75 | TB-Pathway_Paradigm_RNASeq_And_Copy_Number | 0 | 0 | 0 | 1 | 0 |
| 76 | TB-ProcessCoverageForMutSig2.0 | 0 | 0 | 0 | 1 | 0 |
| 77 | TB-RPPA_Clustering_CNMF | 1 | 0 | 0 | 0 | 0 |
| 78 | TB-RPPA_Clustering_Consensus | 1 | 0 | 0 | 0 | 0 |
| Total | 25 | 2 | 0 | 50 | 1 |