Broad GDAC analyses__2013_02_22_

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
OV	592	580	566	0	584	574	297	570	454	412	316

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	Successful
1	TP-Aggregate_Gene_Status	1
2	TP-Aggregate_Molecular_Subtype_Clusters	1
3	TP-CoMut2.0	1
4	TP-CoMutCV	1
5	TP-CopyNumber_Clustering_CNMF	1
6	TP-CopyNumber_Gistic2	1
7	TP-CopyNumber_Gistic2_Analysis	1
8	TP-CopyNumber_Gistic2_Postprocess_Focal	1
9	TP-Correlate_Clinical_vs_CopyNumber_Arm	1
10	TP-Correlate_Clinical_vs_CopyNumber_Focal	1
11	TP-Correlate_Clinical_vs_Methylation	1
12	TP-Correlate_Clinical_vs_miR	1
13	TP-Correlate_Clinical_vs_miRseq	1
14	TP-Correlate_Clinical_vs_Molecular_Signatures	1
15	TP-Correlate_Clinical_vs_mRNA	1
16	TP-Correlate_Clinical_vs_mRNAseq	1
17	TP-Correlate_Clinical_vs_Mutation	1
18	TP-Correlate_Clinical_vs_RPPA	1
19	TP-Correlate_CopyNumber_vs_miR	1
20	TP-Correlate_CopyNumber_vs_mRNA	1
21	TP-Correlate_CopyNumber_vs_mRNAseq	1
22	TP-Correlate_Methylation_vs_mRNA	1
23	TP-Correlate_molecularSubtype_vs_CopyNumber_Arm	1
24	TP-Correlate_molecularSubtype_vs_CopyNumber_Focal	1
25	TP-Correlate_molecularSubtype_vs_Mutation	1
26	TP-GenerateStickFigures2.0	1
27	TP-GenerateStickFiguresCV	1
28	TP-GenerateStickFiguresS2N	1
29	TP-Hotnet	1
30	TP-Hotnet_preprocess	1
31	TP-Methylation_Clustering_CNMF	1
32	TP-Methylation_Preprocess	1
33	TP-miR_Clustering_CNMF	1
34	TP-miR_Clustering_Consensus	1
35	TP-miR_FindDirectTargets	1
36	TP-miRseq_Clustering_CNMF	1
37	TP-miRseq_Clustering_Consensus	1
38	TP-miRseq_Preprocess	1
39	TP-mRNA_Clustering_CNMF	1
40	TP-mRNA_Clustering_Consensus	1
41	TP-mRNA_Preprocess_Median	1
42	TP-mRNAseq_Clustering_CNMF	1
43	TP-mRNAseq_Clustering_Consensus	1
44	TP-Mutation_Assessor	1
45	TP-MutSigNozzleReport2.0	1
46	TP-MutSigNozzleReportCV	1
47	TP-MutSigNozzleReportS2N	1
48	TP-MutSigPreprocess2.0	1
49	TP-MutSigRun2.0	1
50	TP-MutSigRunCV	1
51	TP-MutSigRunS2N	1
52	TP-Paradigm_mRNA	1
53	TP-Paradigm_mRNA_And_CopyNumber	1
54	TP-Paradigm_Prepare_mRNA	1
55	TP-Paradigm_Prepare_mRNA_And_Copy_Number	1
56	TP-Paradigm_Prepare_RNASeq	1
57	TP-Paradigm_Prepare_RNASeq_And_Copy_Number	1
58	TP-Paradigm_Preprocess_mRNA	1
59	TP-ParadigmPreprocess_mRNA	1
60	TP-Paradigm_Preprocess_mRNA_And_Copy_Number	1
61	TP-Paradigm_Preprocess_RNASeq	1
62	TP-ParadigmPreprocess_RNASeq	1
63	TP-Paradigm_Preprocess_RNASeq_And_Copy_Number	1
64	TP-Paradigm_Report_Preprocess_mRNA	1
65	TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1
66	TP-Paradigm_Report_Preprocess_RNASeq	1
67	TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	1
68	TP-Paradigm_RNASeq	1
69	TP-Paradigm_RNASeq_And_Copy_Number	1
70	TP-Pathway_FindEnrichedGenes	1
71	TP-Pathway_Hotnet	1
72	TP-Pathway_Paradigm_mRNA	1
73	TP-Pathway_Paradigm_mRNA_And_Copy_Number	1
74	TP-Pathway_Paradigm_RNASeq	1
75	TP-Pathway_Paradigm_RNASeq_And_Copy_Number	1
76	TP-ProcessCoverageForMutSig2.0	1
77	TP-RPPA_Clustering_CNMF	1
78	TP-RPPA_Clustering_Consensus	1
	Total	78

This table generated on Fri Mar 29 15:56:02 2013

Broad GDAC Analyses Status analyses__2013_02_22__ov Run for Tumor Type: OV

Broad GDAC Analyses Status
analyses__2013_02_22__ov Run for Tumor Type: OV