Broad GDAC Analyses Status
analyses__2013_02_22__stad Run for Tumor Type: STAD

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
STAD308162237025704302370116

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Gene_Status00010
2TP-Aggregate_Molecular_Subtype_Clusters00010
3TP-CoMut2.000010
4TP-CoMutCV00010
5TP-CopyNumber_Clustering_CNMF00010
6TP-CopyNumber_Gistic200010
7TP-CopyNumber_Gistic2_Analysis00010
8TP-CopyNumber_Gistic2_Postprocess_Focal00010
9TP-Correlate_Clinical_vs_CopyNumber_Arm00010
10TP-Correlate_Clinical_vs_CopyNumber_Focal00010
11TP-Correlate_Clinical_vs_Methylation10000
12TP-Correlate_Clinical_vs_miR10000
13TP-Correlate_Clinical_vs_miRseq00010
14TP-Correlate_Clinical_vs_Molecular_Signatures00010
15TP-Correlate_Clinical_vs_mRNA10000
16TP-Correlate_Clinical_vs_mRNAseq00010
17TP-Correlate_Clinical_vs_Mutation00010
18TP-Correlate_Clinical_vs_RPPA10000
19TP-Correlate_CopyNumber_vs_miR10000
20TP-Correlate_CopyNumber_vs_mRNA10000
21TP-Correlate_CopyNumber_vs_mRNAseq00010
22TP-Correlate_Methylation_vs_mRNA10000
23TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
24TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
25TP-Correlate_molecularSubtype_vs_Mutation00010
26TP-GenerateStickFigures2.000010
27TP-GenerateStickFiguresCV00010
28TP-GenerateStickFiguresS2N00010
29TP-Hotnet00010
30TP-Hotnet_preprocess00010
31TP-Methylation_Clustering_CNMF00010
32TP-Methylation_Preprocess00010
33TP-miR_Clustering_CNMF10000
34TP-miR_Clustering_Consensus10000
35TP-miR_FindDirectTargets10000
36TP-miRseq_Clustering_CNMF00010
37TP-miRseq_Clustering_Consensus00010
38TP-miRseq_Preprocess00010
39TP-mRNA_Clustering_CNMF10000
40TP-mRNA_Clustering_Consensus10000
41TP-mRNA_Preprocess_Median10000
42TP-mRNAseq_Clustering_CNMF00010
43TP-mRNAseq_Clustering_Consensus00010
44TP-Mutation_Assessor00010
45TP-MutSigNozzleReport2.000010
46TP-MutSigNozzleReportCV00010
47TP-MutSigNozzleReportS2N00010
48TP-MutSigPreprocess2.000010
49TP-MutSigRun2.000010
50TP-MutSigRunCV00010
51TP-MutSigRunS2N00010
52TP-Paradigm_mRNA10000
53TP-Paradigm_mRNA_And_CopyNumber10000
54TP-Paradigm_Prepare_mRNA10000
55TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
56TP-Paradigm_Prepare_RNASeq00010
57TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
58TP-Paradigm_Preprocess_mRNA10000
59TP-ParadigmPreprocess_mRNA10000
60TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
61TP-Paradigm_Preprocess_RNASeq00010
62TP-ParadigmPreprocess_RNASeq00010
63TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
64TP-Paradigm_Report_Preprocess_mRNA10000
65TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
66TP-Paradigm_Report_Preprocess_RNASeq00010
67TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
68TP-Paradigm_RNASeq00010
69TP-Paradigm_RNASeq_And_Copy_Number00010
70TP-Pathway_FindEnrichedGenes10000
71TP-Pathway_Hotnet00010
72TP-Pathway_Paradigm_mRNA10000
73TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
74TP-Pathway_Paradigm_RNASeq00010
75TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
76TP-ProcessCoverageForMutSig2.000010
77TP-RPPA_Clustering_CNMF10000
78TP-RPPA_Clustering_Consensus10000
Total2700510

This table generated on Fri Mar 29 15:56:04 2013