
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/348331/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/BRCA-TP/2710031/1.GDAC_mergedClustering.Finished/BRCA-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=BRCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=BRCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=914, in cluster file=891, common to both=891
[1]  80 891
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               89               802 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               89               802 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              473               418 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              473               418 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               48               843 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               48               843 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               25               866 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               25               866 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               52               839 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               52               839 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               98               793 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               98               793 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               29               862 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               29               862 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               27               864 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               27               864 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              166               725 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              166               725 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
              102               789 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
              102               789 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              101               790 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              101               790 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               59               832 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               59               832 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              153               738 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              153               738 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              111               780 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              111               780 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              169               722 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              169               722 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              366               525 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              366               525 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               67               824 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               67               824 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               54               837 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               54               837 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               109                782 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               109                782 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                44                847 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                44                847 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                64                827 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                64                827 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                45                846 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                45                846 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               110                781 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               110                781 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                83                808 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                83                808 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                45                846 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                45                846 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                77                814 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                77                814 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                46                845 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                46                845 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               239                652 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               239                652 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                53                838 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                53                838 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                46                845 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                46                845 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               122                769 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               122                769 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                86                805 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                86                805 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                74                817 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                74                817 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                67                824 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                67                824 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                83                808 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                83                808 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               236                655 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               236                655 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               272                619 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               272                619 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
               101                790 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
               101                790 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                42                849 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                42                849 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               871 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               871 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              123               768 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              123               768 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               21               870 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               21               870 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               71               820 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               71               820 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               87               804 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               87               804 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               90               801 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               90               801 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               45               846 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               45               846 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              184               707 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              184               707 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              154               737 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              154               737 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               72               819 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               72               819 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              123               768 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              123               768 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              105               786 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              105               786 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              164               727 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              164               727 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               47               844 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               47               844 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               63               828 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               63               828 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              274               617 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              274               617 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               45               846 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               45               846 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              184               707 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              184               707 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              142               749 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              142               749 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                71                820 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                71                820 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               110                781 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               110                781 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               148                743 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               148                743 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               228                663 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               228                663 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                67                824 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                67                824 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                52                839 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                52                839 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               264                627 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               264                627 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               131                760 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               131                760 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               159                732 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               159                732 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                56                835 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                56                835 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               392                499 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               392                499 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               367                524 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               367                524 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               141                750 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               141                750 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               172                719 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               172                719 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               175                716 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               175                716 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                65                826 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                65                826 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                51                840 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                51                840 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                54                837 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                54                837 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                29                862 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                29                862 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                87                804 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                87                804 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               298                593 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               298                593 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               30               861 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               30               861 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 891 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 891 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              19               237
  CLUS_2              11                81
  CLUS_3              33               126
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              32                89
  CLUS_2              17               235
  CLUS_3              14               120
D1V3, multiclass
D1V4, multiclass
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              34               112
  CLUS_2              13               116
  CLUS_3               6               109
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              20               136
  CLUS_2               5               103
  CLUS_3              28                98
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              46               189
  CLUS_2              12               143
  CLUS_3              27               407
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              32               381
  CLUS_2              15               201
  CLUS_3              38               157
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              13               187
  CLUS_2              30               393
  CLUS_3              44               205
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              37               167
  CLUS_2              42               567
  CLUS_3               8                51

Clustering(2) Variable = 1q gain mutation analysis
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1             154               102
  CLUS_2              47                45
  CLUS_3              83                76
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              64                57
  CLUS_2             145               107
  CLUS_3              75                59
D2V3, multiclass
D2V4, multiclass
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              78                68
  CLUS_2              81                48
  CLUS_3              58                57
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              96                60
  CLUS_2              56                52
  CLUS_3              65                61
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1             113               122
  CLUS_2              82                73
  CLUS_3             246               188
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1             239               174
  CLUS_2             113               103
  CLUS_3              89               106
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              92               108
  CLUS_2             242               181
  CLUS_3             127               122
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              91               113
  CLUS_2             337               272
  CLUS_3              33                26

Clustering(3) Variable = 2p gain mutation analysis
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               2               254
  CLUS_2               2                90
  CLUS_3              29               130
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              25                96
  CLUS_2               8               244
  CLUS_3               0               134
D3V3, multiclass
D3V4, multiclass
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              24               122
  CLUS_2               0               129
  CLUS_3               4               111
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4               152
  CLUS_2               1               107
  CLUS_3              23               103
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              35               200
  CLUS_2               0               155
  CLUS_3              12               422
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              15               398
  CLUS_2               0               216
  CLUS_3              32               163
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1               199
  CLUS_2               8               415
  CLUS_3              33               216
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              27               177
  CLUS_2              10               599
  CLUS_3               5                54

Clustering(4) Variable = 2q gain mutation analysis
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               1               255
  CLUS_2               1                91
  CLUS_3              17               142
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              13               108
  CLUS_2               6               246
  CLUS_3               0               134
D4V3, multiclass
D4V4, multiclass
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              16               130
  CLUS_2               0               129
  CLUS_3               0               115
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4               152
  CLUS_2               0               108
  CLUS_3              12               114
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              18               217
  CLUS_2               0               155
  CLUS_3               6               428
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               9               404
  CLUS_2               0               216
  CLUS_3              15               180
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               1               199
  CLUS_2               5               418
  CLUS_3              14               235
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              13               191
  CLUS_2               6               603
  CLUS_3               1                58

Clustering(5) Variable = 3p gain mutation analysis
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              19               237
  CLUS_2               6                86
  CLUS_3              14               145
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              10               111
  CLUS_2              25               227
  CLUS_3               4               130
D5V3, multiclass
D5V4, multiclass
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              13               133
  CLUS_2              10               119
  CLUS_3               6               109
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              14               142
  CLUS_2               4               104
  CLUS_3              11               115
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16               219
  CLUS_2               3               152
  CLUS_3              30               404
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              31               382
  CLUS_2               6               210
  CLUS_3              12               183
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4               196
  CLUS_2              28               395
  CLUS_3              17               232
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16               188
  CLUS_2              32               577
  CLUS_3               1                58

Clustering(6) Variable = 3q gain mutation analysis
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              25               231
  CLUS_2               8                84
  CLUS_3              30               129
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              23                98
  CLUS_2              33               219
  CLUS_3               7               127
D6V3, multiclass
D6V4, multiclass
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              28               118
  CLUS_2              12               117
  CLUS_3              11               104
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              19               137
  CLUS_2              10                98
  CLUS_3              22               104
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              40               195
  CLUS_2               6               149
  CLUS_3              48               386
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              45               368
  CLUS_2              13               203
  CLUS_3              36               159
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              10               190
  CLUS_2              40               383
  CLUS_3              45               204
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              37               167
  CLUS_2              52               557
  CLUS_3               6                53

Clustering(7) Variable = 4p gain mutation analysis
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              13               243
  CLUS_2               1                91
  CLUS_3               3               156
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0               121
  CLUS_2              17               235
  CLUS_3               0               134
D7V3, multiclass
D7V4, multiclass
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2               144
  CLUS_2               9               120
  CLUS_3               3               112
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              10               146
  CLUS_2               3               105
  CLUS_3               1               125
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               4               231
  CLUS_2               2               153
  CLUS_3              23               411
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              24               389
  CLUS_2               3               213
  CLUS_3               2               193
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2               198
  CLUS_2              24               399
  CLUS_3               2               247
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3               201
  CLUS_2              23               586
  CLUS_3               2                57

Clustering(8) Variable = 4q gain mutation analysis
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              12               244
  CLUS_2               1                91
  CLUS_3               4               155
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0               121
  CLUS_2              16               236
  CLUS_3               1               133
D8V3, multiclass
D8V4, multiclass
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3               143
  CLUS_2              10               119
  CLUS_3               3               112
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              12               144
  CLUS_2               3               105
  CLUS_3               1               125
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3               232
  CLUS_2               2               153
  CLUS_3              22               412
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              21               392
  CLUS_2               5               211
  CLUS_3               1               194
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3               197
  CLUS_2              21               402
  CLUS_3               2               247
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2               202
  CLUS_2              22               587
  CLUS_3               2                57

Clustering(9) Variable = 5p gain mutation analysis
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              51               205
  CLUS_2              16                76
  CLUS_3              37               122
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              27                94
  CLUS_2              55               197
  CLUS_3              22               112
D9V3, multiclass
D9V4, multiclass
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              30               116
  CLUS_2              32                97
  CLUS_3              22                93
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              39               117
  CLUS_2              23                85
  CLUS_3              22               104
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              47               188
  CLUS_2              26               129
  CLUS_3              85               349
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              83               330
  CLUS_2              34               182
  CLUS_3              41               154
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              25               175
  CLUS_2              80               343
  CLUS_3              56               193
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              39               165
  CLUS_2             114               495
  CLUS_3               8                51

Clustering(10) Variable = 5q gain mutation analysis
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              42               214
  CLUS_2               7                85
  CLUS_3              14               145
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7               114
  CLUS_2              43               209
  CLUS_3              13               121
D10V3, multiclass
D10V4, multiclass
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              11               135
  CLUS_2              29               100
  CLUS_3              13               102
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              30               126
  CLUS_2              16                92
  CLUS_3               7               119
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              13               222
  CLUS_2              17               138
  CLUS_3              66               368
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              66               347
  CLUS_2              23               193
  CLUS_3               7               188
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              16               184
  CLUS_2              64               359
  CLUS_3              20               229
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7               197
  CLUS_2              87               522
  CLUS_3               6                53

Clustering(11) Variable = 6p gain mutation analysis
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              19               237
  CLUS_2               5                87
  CLUS_3              34               125
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              23                98
  CLUS_2              32               220
  CLUS_3               3               131
D11V3, multiclass
D11V4, multiclass
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              27               119
  CLUS_2              11               118
  CLUS_3               7               108
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              17               139
  CLUS_2               7               101
  CLUS_3              21               105
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              50               185
  CLUS_2               4               151
  CLUS_3              39               395
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              42               371
  CLUS_2               8               208
  CLUS_3              43               152
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7               193
  CLUS_2              31               392
  CLUS_3              57               192
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              47               157
  CLUS_2              42               567
  CLUS_3               6                53

Clustering(12) Variable = 6q gain mutation analysis
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              11               245
  CLUS_2               3                89
  CLUS_3              24               135
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              15               106
  CLUS_2              20               232
  CLUS_3               3               131
D12V3, multiclass
D12V4, multiclass
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              21               125
  CLUS_2               7               122
  CLUS_3               2               113
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              12               144
  CLUS_2               3               105
  CLUS_3              15               111
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              31               204
  CLUS_2               2               153
  CLUS_3              23               411
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              26               387
  CLUS_2               3               213
  CLUS_3              27               168
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               4               196
  CLUS_2              17               406
  CLUS_3              34               215
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              28               176
  CLUS_2              21               588
  CLUS_3               6                53

Clustering(13) Variable = 7p gain mutation analysis
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              43               213
  CLUS_2              14                78
  CLUS_3              34               125
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              26                95
  CLUS_2              45               207
  CLUS_3              20               114
D13V3, multiclass
D13V4, multiclass
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              27               119
  CLUS_2              23               106
  CLUS_3              22                93
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              25               131
  CLUS_2              20                88
  CLUS_3              27                99
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              49               186
  CLUS_2              17               138
  CLUS_3              81               353
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              71               342
  CLUS_2              32               184
  CLUS_3              44               151
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              25               175
  CLUS_2              76               347
  CLUS_3              44               205
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              45               159
  CLUS_2              94               515
  CLUS_3               6                53

Clustering(14) Variable = 7q gain mutation analysis
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              27               229
  CLUS_2              11                81
  CLUS_3              27               132
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              25                96
  CLUS_2              25               227
  CLUS_3              15               119
D14V3, multiclass
D14V4, multiclass
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              22               124
  CLUS_2              16               113
  CLUS_3              10               105
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              17               139
  CLUS_2              10                98
  CLUS_3              21               105
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              43               192
  CLUS_2              12               143
  CLUS_3              50               384
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              46               367
  CLUS_2              18               198
  CLUS_3              41               154
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              18               182
  CLUS_2              51               372
  CLUS_3              40               209
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              42               162
  CLUS_2              64               545
  CLUS_3               3                56

Clustering(15) Variable = 8p gain mutation analysis
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              60               196
  CLUS_2              14                78
  CLUS_3              27               132
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              24                97
  CLUS_2              61               191
  CLUS_3              16               118
D15V3, multiclass
D15V4, multiclass
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              23               123
  CLUS_2              32                97
  CLUS_3              20                95
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              35               121
  CLUS_2              17                91
  CLUS_3              23               103
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              43               192
  CLUS_2              13               142
  CLUS_3              99               335
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              98               315
  CLUS_2              22               194
  CLUS_3              35               160
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              23               177
  CLUS_2              82               341
  CLUS_3              59               190
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              39               165
  CLUS_2             113               496
  CLUS_3              12                47

Clustering(16) Variable = 8q gain mutation analysis
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             113               143
  CLUS_2              31                61
  CLUS_3              86                73
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              60                61
  CLUS_2             131               121
  CLUS_3              39                95
D16V3, multiclass
D16V4, multiclass
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              69                77
  CLUS_2              54                75
  CLUS_3              52                63
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              71                85
  CLUS_2              44                64
  CLUS_3              60                66
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             114               121
  CLUS_2              35               120
  CLUS_3             200               234
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             195               218
  CLUS_2              61               155
  CLUS_3              93               102
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              47               153
  CLUS_2             173               250
  CLUS_3             136               113
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1             100               104
  CLUS_2             226               383
  CLUS_3              30                29

Clustering(17) Variable = 9p gain mutation analysis
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              10               246
  CLUS_2               7                85
  CLUS_3              24               135
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              26                95
  CLUS_2               9               243
  CLUS_3               6               128
D17V3, multiclass
D17V4, multiclass
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              21               125
  CLUS_2               6               123
  CLUS_3               7               108
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               5               151
  CLUS_2               7               101
  CLUS_3              22               104
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              38               197
  CLUS_2               7               148
  CLUS_3              17               417
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              20               393
  CLUS_2               7               209
  CLUS_3              35               160
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               7               193
  CLUS_2              21               402
  CLUS_3              37               212
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              34               170
  CLUS_2              27               582
  CLUS_3               4                55

Clustering(18) Variable = 9q gain mutation analysis
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              16               240
  CLUS_2               3                89
  CLUS_3              13               146
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              13               108
  CLUS_2              15               237
  CLUS_3               4               130
D18V3, multiclass
D18V4, multiclass
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              10               136
  CLUS_2               9               120
  CLUS_3               7               108
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               9               147
  CLUS_2               6               102
  CLUS_3              11               115
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              22               213
  CLUS_2               5               150
  CLUS_3              24               410
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              25               388
  CLUS_2               6               210
  CLUS_3              20               175
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6               194
  CLUS_2              26               397
  CLUS_3              21               228
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              17               187
  CLUS_2              32               577
  CLUS_3               4                55

Clustering(19) Variable = 10p gain mutation analysis
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               17                239
  CLUS_2                9                 83
  CLUS_3               45                114
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               37                 84
  CLUS_2               25                227
  CLUS_3                9                125
D19V3, multiclass
D19V4, multiclass
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               36                110
  CLUS_2                7                122
  CLUS_3               12                103
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               10                146
  CLUS_2               10                 98
  CLUS_3               35                 91
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               66                169
  CLUS_2                7                148
  CLUS_3               30                404
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               32                381
  CLUS_2               12                204
  CLUS_3               59                136
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               12                188
  CLUS_2               27                396
  CLUS_3               67                182
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               57                147
  CLUS_2               39                570
  CLUS_3               10                 49

Clustering(20) Variable = 10q gain mutation analysis
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                7                249
  CLUS_2                5                 87
  CLUS_3               18                141
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               14                107
  CLUS_2               12                240
  CLUS_3                4                130
D20V3, multiclass
D20V4, multiclass
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               16                130
  CLUS_2                5                124
  CLUS_3                7                108
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                8                148
  CLUS_2                5                103
  CLUS_3               15                111
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               21                214
  CLUS_2                3                152
  CLUS_3               17                417
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               19                394
  CLUS_2                4                212
  CLUS_3               18                177
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                197
  CLUS_2               18                405
  CLUS_3               22                227
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               17                187
  CLUS_2               21                588
  CLUS_3                5                 54

Clustering(21) Variable = 11p gain mutation analysis
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               18                238
  CLUS_2                6                 86
  CLUS_3               15                144
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                7                114
  CLUS_2               20                232
  CLUS_3               12                122
D21V3, multiclass
D21V4, multiclass
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                137
  CLUS_2               14                115
  CLUS_3               10                105
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               15                141
  CLUS_2               12                 96
  CLUS_3                6                120
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               18                217
  CLUS_2                9                146
  CLUS_3               36                398
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               34                379
  CLUS_2               16                200
  CLUS_3               13                182
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               10                190
  CLUS_2               33                390
  CLUS_3               19                230
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               15                189
  CLUS_2               40                569
  CLUS_3                7                 52

Clustering(22) Variable = 11q gain mutation analysis
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               11                245
  CLUS_2                6                 86
  CLUS_3               14                145
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                115
  CLUS_2               17                235
  CLUS_3                8                126
D22V3, multiclass
D22V4, multiclass
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                137
  CLUS_2                9                120
  CLUS_3                8                107
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               10                146
  CLUS_2                9                 99
  CLUS_3                7                119
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               17                218
  CLUS_2                7                148
  CLUS_3               20                414
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               20                393
  CLUS_2               10                206
  CLUS_3               14                181
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                7                193
  CLUS_2               19                404
  CLUS_3               17                232
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               15                189
  CLUS_2               24                585
  CLUS_3                4                 55

Clustering(23) Variable = 12p gain mutation analysis
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               32                224
  CLUS_2                7                 85
  CLUS_3               36                123
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               27                 94
  CLUS_2               40                212
  CLUS_3                8                126
D23V3, multiclass
D23V4, multiclass
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               27                119
  CLUS_2               21                108
  CLUS_3               14                101
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               23                133
  CLUS_2               12                 96
  CLUS_3               27                 99
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               42                193
  CLUS_2                6                149
  CLUS_3               57                377
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               51                362
  CLUS_2               15                201
  CLUS_3               39                156
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               12                188
  CLUS_2               42                381
  CLUS_3               51                198
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               41                163
  CLUS_2               59                550
  CLUS_3                5                 54

Clustering(24) Variable = 12q gain mutation analysis
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               33                223
  CLUS_2                3                 89
  CLUS_3               19                140
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                8                113
  CLUS_2               39                213
  CLUS_3                8                126
D24V3, multiclass
D24V4, multiclass
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               13                133
  CLUS_2               20                109
  CLUS_3               14                101
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               22                134
  CLUS_2               13                 95
  CLUS_3               12                114
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               18                217
  CLUS_2                6                149
  CLUS_3               56                378
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               51                362
  CLUS_2               16                200
  CLUS_3               13                182
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                8                192
  CLUS_2               47                376
  CLUS_3               26                223
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               15                189
  CLUS_2               62                547
  CLUS_3                4                 55

Clustering(25) Variable = 13q gain mutation analysis
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               16                240
  CLUS_2                1                 91
  CLUS_3               13                146
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                9                112
  CLUS_2               18                234
  CLUS_3                3                131
D25V3, multiclass
D25V4, multiclass
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               14                132
  CLUS_2               10                119
  CLUS_3                2                113
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               12                144
  CLUS_2                3                105
  CLUS_3               11                115
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               17                218
  CLUS_2                0                155
  CLUS_3               24                410
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               21                392
  CLUS_2                5                211
  CLUS_3               15                180
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                196
  CLUS_2               19                404
  CLUS_3               21                228
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               16                188
  CLUS_2               22                587
  CLUS_3                6                 53

Clustering(26) Variable = 14q gain mutation analysis
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               26                230
  CLUS_2                3                 89
  CLUS_3               17                142
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                7                114
  CLUS_2               32                220
  CLUS_3                7                127
D26V3, multiclass
D26V4, multiclass
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               13                133
  CLUS_2               12                117
  CLUS_3                9                106
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               18                138
  CLUS_2                8                100
  CLUS_3                8                118
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               15                220
  CLUS_2                3                152
  CLUS_3               56                378
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               52                361
  CLUS_2               10                206
  CLUS_3               12                183
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                6                194
  CLUS_2               49                374
  CLUS_3               21                228
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               11                193
  CLUS_2               58                551
  CLUS_3                7                 52

Clustering(27) Variable = 15q gain mutation analysis
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               11                245
  CLUS_2                4                 88
  CLUS_3               10                149
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                9                112
  CLUS_2               10                242
  CLUS_3                6                128
D27V3, multiclass
D27V4, multiclass
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                8                138
  CLUS_2                7                122
  CLUS_3                5                110
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                150
  CLUS_2                5                103
  CLUS_3                9                117
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               15                220
  CLUS_2                4                151
  CLUS_3               24                410
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               20                393
  CLUS_2                8                208
  CLUS_3               15                180
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                194
  CLUS_2               26                397
  CLUS_3               14                235
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               17                187
  CLUS_2               27                582
  CLUS_3                2                 57

Clustering(28) Variable = 16p gain mutation analysis
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               92                164
  CLUS_2               18                 74
  CLUS_3               36                123
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               21                100
  CLUS_2               88                164
  CLUS_3               37                 97
D28V3, multiclass
D28V4, multiclass
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               29                117
  CLUS_2               52                 77
  CLUS_3               29                 86
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               53                103
  CLUS_2               37                 71
  CLUS_3               20                106
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               44                191
  CLUS_2               41                114
  CLUS_3              146                288
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1              145                268
  CLUS_2               54                162
  CLUS_3               32                163
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               43                157
  CLUS_2              138                285
  CLUS_3               52                197
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               40                164
  CLUS_2              175                434
  CLUS_3               18                 41

Clustering(29) Variable = 16q gain mutation analysis
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               15                241
  CLUS_2                6                 86
  CLUS_3               14                145
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               11                110
  CLUS_2               18                234
  CLUS_3                6                128
D29V3, multiclass
D29V4, multiclass
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               14                132
  CLUS_2               10                119
  CLUS_3                4                111
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               12                144
  CLUS_2                6                102
  CLUS_3               10                116
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               20                215
  CLUS_2                5                150
  CLUS_3               27                407
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               27                386
  CLUS_2                8                208
  CLUS_3               17                178
D29V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                194
  CLUS_2               21                402
  CLUS_3               24                225
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               20                184
  CLUS_2               25                584
  CLUS_3                6                 53

Clustering(30) Variable = 17p gain mutation analysis
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               20                236
  CLUS_2                3                 89
  CLUS_3                5                154
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                4                117
  CLUS_2               18                234
  CLUS_3                6                128
D30V3, multiclass
D30V4, multiclass
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                5                141
  CLUS_2               11                118
  CLUS_3                8                107
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               12                144
  CLUS_2                8                100
  CLUS_3                4                122
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               11                224
  CLUS_2                6                149
  CLUS_3               26                408
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               24                389
  CLUS_2               11                205
  CLUS_3                8                187
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                191
  CLUS_2               26                397
  CLUS_3               10                239
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               10                194
  CLUS_2               34                575
  CLUS_3                1                 58

Clustering(31) Variable = 17q gain mutation analysis
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               41                215
  CLUS_2                6                 86
  CLUS_3               16                143
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                7                114
  CLUS_2               42                210
  CLUS_3               14                120
D31V3, multiclass
D31V4, multiclass
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               14                132
  CLUS_2               19                110
  CLUS_3               12                103
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               24                132
  CLUS_2               15                 93
  CLUS_3                6                120
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               16                219
  CLUS_2               20                135
  CLUS_3               83                351
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               80                333
  CLUS_2               29                187
  CLUS_3               10                185
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               23                177
  CLUS_2               69                354
  CLUS_3               27                222
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               17                187
  CLUS_2               96                513
  CLUS_3                6                 53

Clustering(32) Variable = 18p gain mutation analysis
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               22                234
  CLUS_2                5                 87
  CLUS_3               27                132
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               24                 97
  CLUS_2               25                227
  CLUS_3                5                129
D32V3, multiclass
D32V4, multiclass
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               25                121
  CLUS_2               13                116
  CLUS_3                5                110
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               15                141
  CLUS_2                5                103
  CLUS_3               23                103
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               36                199
  CLUS_2                2                153
  CLUS_3               45                389
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               44                369
  CLUS_2                4                212
  CLUS_3               35                160
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                7                193
  CLUS_2               31                392
  CLUS_3               42                207
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               37                167
  CLUS_2               40                569
  CLUS_3                3                 56

Clustering(33) Variable = 18q gain mutation analysis
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               24                232
  CLUS_2                5                 87
  CLUS_3               20                139
D33V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               18                103
  CLUS_2               27                225
  CLUS_3                4                130
D33V3, multiclass
D33V4, multiclass
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               20                126
  CLUS_2               12                117
  CLUS_3                8                107
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               14                142
  CLUS_2                8                100
  CLUS_3               18                108
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               23                212
  CLUS_2                2                153
  CLUS_3               45                389
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               41                372
  CLUS_2                5                211
  CLUS_3               24                171
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                195
  CLUS_2               31                392
  CLUS_3               33                216
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               27                177
  CLUS_2               40                569
  CLUS_3                2                 57

Clustering(34) Variable = 19p gain mutation analysis
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               22                234
  CLUS_2                4                 88
  CLUS_3               20                139
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               18                103
  CLUS_2               22                230
  CLUS_3                6                128
D34V3, multiclass
D34V4, multiclass
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               20                126
  CLUS_2                8                121
  CLUS_3                8                107
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               13                143
  CLUS_2                6                102
  CLUS_3               17                109
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               29                206
  CLUS_2                8                147
  CLUS_3               28                406
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               25                388
  CLUS_2               11                205
  CLUS_3               29                166
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                9                191
  CLUS_2               28                395
  CLUS_3               28                221
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               26                178
  CLUS_2               32                577
  CLUS_3                7                 52

Clustering(35) Variable = 19q gain mutation analysis
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               25                231
  CLUS_2                7                 85
  CLUS_3               20                139
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               19                102
  CLUS_2               25                227
  CLUS_3                8                126
D35V3, multiclass
D35V4, multiclass
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               19                127
  CLUS_2                9                120
  CLUS_3                9                106
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                143
  CLUS_2                7                101
  CLUS_3               17                109
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               33                202
  CLUS_2               12                143
  CLUS_3               36                398
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               33                380
  CLUS_2               15                201
  CLUS_3               33                162
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               14                186
  CLUS_2               35                388
  CLUS_3               33                216
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               29                175
  CLUS_2               45                564
  CLUS_3                8                 51

Clustering(36) Variable = 20p gain mutation analysis
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               67                189
  CLUS_2               15                 77
  CLUS_3               68                 91
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               35                 86
  CLUS_2               90                162
  CLUS_3               25                109
D36V3, multiclass
D36V4, multiclass
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               57                 89
  CLUS_2               35                 94
  CLUS_3               29                 86
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               52                104
  CLUS_2               25                 83
  CLUS_3               44                 82
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               67                168
  CLUS_2               26                129
  CLUS_3              136                298
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1              129                284
  CLUS_2               49                167
  CLUS_3               51                144
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               27                173
  CLUS_2              121                302
  CLUS_3               83                166
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               53                151
  CLUS_2              157                452
  CLUS_3               21                 38

Clustering(37) Variable = 20q gain mutation analysis
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               82                174
  CLUS_2               17                 75
  CLUS_3               68                 91
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               35                 86
  CLUS_2              102                150
  CLUS_3               30                104
D37V3, multiclass
D37V4, multiclass
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               58                 88
  CLUS_2               40                 89
  CLUS_3               36                 79
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               56                100
  CLUS_2               34                 74
  CLUS_3               44                 82
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               70                165
  CLUS_2               28                127
  CLUS_3              165                269
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1              153                260
  CLUS_2               57                159
  CLUS_3               53                142
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               32                168
  CLUS_2              143                280
  CLUS_3               93                156
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               60                144
  CLUS_2              183                426
  CLUS_3               25                 34

Clustering(38) Variable = 21q gain mutation analysis
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               22                234
  CLUS_2                8                 84
  CLUS_3               32                127
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               27                 94
  CLUS_2               29                223
  CLUS_3                6                128
D38V3, multiclass
D38V4, multiclass
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               26                120
  CLUS_2               13                116
  CLUS_3               12                103
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                141
  CLUS_2               10                 98
  CLUS_3               26                100
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               54                181
  CLUS_2                4                151
  CLUS_3               37                397
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               40                373
  CLUS_2                8                208
  CLUS_3               47                148
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               15                185
  CLUS_2               34                389
  CLUS_3               49                200
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               42                162
  CLUS_2               50                559
  CLUS_3                6                 53

Clustering(39) Variable = 22q gain mutation analysis
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                7                249
  CLUS_2                2                 90
  CLUS_3               14                145
D39V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               11                110
  CLUS_2               11                241
  CLUS_3                1                133
D39V3, multiclass
D39V4, multiclass
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               13                133
  CLUS_2                5                124
  CLUS_3                4                111
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                8                148
  CLUS_2                3                105
  CLUS_3               11                115
D39V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               23                212
  CLUS_2                0                155
  CLUS_3               14                420
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               17                396
  CLUS_2                1                215
  CLUS_3               19                176
D39V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                197
  CLUS_2               15                408
  CLUS_3               23                226
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               23                181
  CLUS_2               15                594
  CLUS_3                3                 56

Clustering(40) Variable = Xq gain mutation analysis
D40V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2               254
  CLUS_2               0                92
  CLUS_3              13               146
D40V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              10               111
  CLUS_2               4               248
  CLUS_3               1               133
D40V3, multiclass
D40V4, multiclass
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8               138
  CLUS_2               1               128
  CLUS_3               3               112
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2               154
  CLUS_2               1               107
  CLUS_3               9               117
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              13               222
  CLUS_2               0               155
  CLUS_3               6               428
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5               408
  CLUS_2               1               215
  CLUS_3              13               182
D40V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0               200
  CLUS_2               4               419
  CLUS_3              15               234
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              13               191
  CLUS_2               6               603
  CLUS_3               0                59

Clustering(41) Variable = 1p loss mutation analysis
D41V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              47               209
  CLUS_2               3                89
  CLUS_3              19               140
D41V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5               116
  CLUS_2              59               193
  CLUS_3               5               129
D41V3, multiclass
D41V4, multiclass
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              16               130
  CLUS_2              20               109
  CLUS_3              15               100
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              25               131
  CLUS_2              14                94
  CLUS_3              12               114
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              15               220
  CLUS_2               5               150
  CLUS_3              92               342
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              82               331
  CLUS_2              20               196
  CLUS_3              10               185
D41V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              13               187
  CLUS_2              77               346
  CLUS_3              30               219
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12               192
  CLUS_2              97               512
  CLUS_3              11                48

Clustering(42) Variable = 1q loss mutation analysis
D42V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               8               248
  CLUS_2               0                92
  CLUS_3               4               155
D42V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3               118
  CLUS_2               9               243
  CLUS_3               0               134
D42V3, multiclass
D42V4, multiclass
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5               141
  CLUS_2               4               125
  CLUS_3               1               114
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5               151
  CLUS_2               2               106
  CLUS_3               3               123
D42V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               4               231
  CLUS_2               0               155
  CLUS_3              16               418
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              13               400
  CLUS_2               4               212
  CLUS_3               3               192
D42V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               0               200
  CLUS_2              12               411
  CLUS_3               7               242
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6               198
  CLUS_2              13               596
  CLUS_3               0                59

Clustering(43) Variable = 2p loss mutation analysis
D43V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              32               224
  CLUS_2               4                88
  CLUS_3               6               153
D43V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3               118
  CLUS_2              33               219
  CLUS_3               6               128
D43V3, multiclass
D43V4, multiclass
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               7               139
  CLUS_2              16               113
  CLUS_3               7               108
D43V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              19               137
  CLUS_2               7               101
  CLUS_3               4               122
D43V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6               229
  CLUS_2               6               149
  CLUS_3              55               379
D43V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              53               360
  CLUS_2              10               206
  CLUS_3               4               191
D43V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5               195
  CLUS_2              50               373
  CLUS_3              12               237
D43V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6               198
  CLUS_2              57               552
  CLUS_3               4                55

Clustering(44) Variable = 2q loss mutation analysis
D44V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              32               224
  CLUS_2               4                88
  CLUS_3              16               143
D44V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               9               112
  CLUS_2              37               215
  CLUS_3               6               128
D44V3, multiclass
D44V4, multiclass
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              15               131
  CLUS_2              16               113
  CLUS_3               6               109
D44V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              21               135
  CLUS_2               6               102
  CLUS_3              10               116
D44V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              19               216
  CLUS_2               6               149
  CLUS_3              57               377
D44V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              56               357
  CLUS_2              12               204
  CLUS_3              14               181
D44V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5               195
  CLUS_2              55               368
  CLUS_3              23               226
D44V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              15               189
  CLUS_2              62               547
  CLUS_3               6                53

Clustering(45) Variable = 3p loss mutation analysis
D45V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              15               241
  CLUS_2               3                89
  CLUS_3              35               124
D45V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              25                96
  CLUS_2              20               232
  CLUS_3               8               126
D45V3, multiclass
D45V4, multiclass
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              27               119
  CLUS_2              12               117
  CLUS_3               6               109
D45V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              14               142
  CLUS_2               4               104
  CLUS_3              27                99
D45V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              43               192
  CLUS_2               8               147
  CLUS_3              34               400
D45V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              34               379
  CLUS_2              17               199
  CLUS_3              34               161
D45V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9               191
  CLUS_2              31               392
  CLUS_3              48               201
D45V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              34               170
  CLUS_2              44               565
  CLUS_3              10                49

Clustering(46) Variable = 3q loss mutation analysis
D46V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7               249
  CLUS_2               1                91
  CLUS_3              20               139
D46V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              14               107
  CLUS_2              11               241
  CLUS_3               3               131
D46V3, multiclass
D46V4, multiclass
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              13               133
  CLUS_2               7               122
  CLUS_3               4               111
D46V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7               149
  CLUS_2               4               104
  CLUS_3              13               113
D46V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              20               215
  CLUS_2               3               152
  CLUS_3              19               415
D46V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              20               393
  CLUS_2               7               209
  CLUS_3              15               180
D46V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3               197
  CLUS_2              18               405
  CLUS_3              22               227
D46V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              14               190
  CLUS_2              24               585
  CLUS_3               5                54

Clustering(47) Variable = 4p loss mutation analysis
D47V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              38               218
  CLUS_2              15                77
  CLUS_3              63                96
D47V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              54                67
  CLUS_2              54               198
  CLUS_3               8               126
D47V3, multiclass
D47V4, multiclass
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              52                94
  CLUS_2              25               104
  CLUS_3              17                98
D47V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              30               126
  CLUS_2              15                93
  CLUS_3              49                77
D47V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              89               146
  CLUS_2               9               146
  CLUS_3              76               358
D47V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              75               338
  CLUS_2              19               197
  CLUS_3              80               115
D47V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              16               184
  CLUS_2              70               353
  CLUS_3              92               157
D47V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              72               132
  CLUS_2              87               522
  CLUS_3              19                40

Clustering(48) Variable = 4q loss mutation analysis
D48V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              34               222
  CLUS_2              13                79
  CLUS_3              49               110
D48V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              42                79
  CLUS_2              47               205
  CLUS_3               7               127
D48V3, multiclass
D48V4, multiclass
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              40               106
  CLUS_2              20               109
  CLUS_3              17                98
D48V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              25               131
  CLUS_2              14                94
  CLUS_3              38                88
D48V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              71               164
  CLUS_2               7               148
  CLUS_3              68               366
D48V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              67               346
  CLUS_2              15               201
  CLUS_3              64               131
D48V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              15               185
  CLUS_2              63               360
  CLUS_3              69               180
D48V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              57               147
  CLUS_2              73               536
  CLUS_3              17                42

Clustering(49) Variable = 5p loss mutation analysis
D49V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              11               245
  CLUS_2               5                87
  CLUS_3              27               132
D49V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              24                97
  CLUS_2              17               235
  CLUS_3               2               132
D49V3, multiclass
D49V4, multiclass
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              26               120
  CLUS_2               5               124
  CLUS_3               6               109
D49V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6               150
  CLUS_2               5               103
  CLUS_3              26               100
D49V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              38               197
  CLUS_2               1               154
  CLUS_3              26               408
D49V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              25               388
  CLUS_2               5               211
  CLUS_3              35               160
D49V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               4               196
  CLUS_2              15               408
  CLUS_3              51               198
D49V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              40               164
  CLUS_2              21               588
  CLUS_3               9                50

Clustering(50) Variable = 5q loss mutation analysis
D50V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              13               243
  CLUS_2               9                83
  CLUS_3              54               105
D50V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              47                74
  CLUS_2              24               228
  CLUS_3               5               129
D50V3, multiclass
D50V4, multiclass
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              45               101
  CLUS_2               7               122
  CLUS_3              13               102
D50V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              11               145
  CLUS_2               9                99
  CLUS_3              45                81
D50V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              79               156
  CLUS_2               4               151
  CLUS_3              33               401
D50V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              33               380
  CLUS_2               9               207
  CLUS_3              74               121
D50V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               6               194
  CLUS_2              26               397
  CLUS_3              87               162
D50V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              79               125
  CLUS_2              28               581
  CLUS_3              12                47

Clustering(51) Variable = 6p loss mutation analysis
D51V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              44               212
  CLUS_2              12                80
  CLUS_3              11               148
D51V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               4               117
  CLUS_2              43               209
  CLUS_3              20               114
D51V3, multiclass
D51V4, multiclass
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10               136
  CLUS_2              20               109
  CLUS_3              20                95
D51V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              28               128
  CLUS_2              15                93
  CLUS_3               7               119
D51V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              11               224
  CLUS_2              14               141
  CLUS_3              76               358
D51V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              68               345
  CLUS_2              26               190
  CLUS_3               7               188
D51V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              12               188
  CLUS_2              69               354
  CLUS_3              21               228
D51V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              11               193
  CLUS_2              82               527
  CLUS_3               9                50

Clustering(52) Variable = 6q loss mutation analysis
D52V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              63               193
  CLUS_2              17                75
  CLUS_3              17               142
D52V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               6               115
  CLUS_2              62               190
  CLUS_3              29               105
D52V3, multiclass
D52V4, multiclass
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              14               132
  CLUS_2              33                96
  CLUS_3              27                88
D52V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              35               121
  CLUS_2              26                82
  CLUS_3              13               113
D52V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              16               219
  CLUS_2              31               124
  CLUS_3             108               326
D52V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              99               314
  CLUS_2              44               172
  CLUS_3              12               183
D52V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              30               170
  CLUS_2             101               322
  CLUS_3              30               219
D52V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              15               189
  CLUS_2             134               475
  CLUS_3              12                47

Clustering(53) Variable = 7p loss mutation analysis
D53V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              15               241
  CLUS_2               1                91
  CLUS_3              11               148
D53V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              10               111
  CLUS_2              15               237
  CLUS_3               2               132
D53V3, multiclass
D53V4, multiclass
D53V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               9               137
  CLUS_2               6               123
  CLUS_3               3               112
D53V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               7               149
  CLUS_2               3               105
  CLUS_3               8               118
D53V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              22               213
  CLUS_2               2               153
  CLUS_3              22               412
D53V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              21               392
  CLUS_2               6               210
  CLUS_3              19               176
D53V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               4               196
  CLUS_2              21               402
  CLUS_3              21               228
D53V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              17               187
  CLUS_2              23               586
  CLUS_3               6                53

Clustering(54) Variable = 7q loss mutation analysis
D54V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              26               230
  CLUS_2               2                90
  CLUS_3              14               145
D54V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               8               113
  CLUS_2              27               225
  CLUS_3               7               127
D54V3, multiclass
D54V4, multiclass
D54V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              11               135
  CLUS_2              13               116
  CLUS_3               5               110
D54V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              14               142
  CLUS_2               5               103
  CLUS_3              10               116
D54V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              18               217
  CLUS_2               5               150
  CLUS_3              40               394
D54V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              37               376
  CLUS_2              12               204
  CLUS_3              14               181
D54V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               6               194
  CLUS_2              32               391
  CLUS_3              23               226
D54V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              15               189
  CLUS_2              39               570
  CLUS_3               7                52

Clustering(55) Variable = 8p loss mutation analysis
D55V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              82               174
  CLUS_2              19                73
  CLUS_3              62                97
D55V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              41                80
  CLUS_2              88               164
  CLUS_3              34               100
D55V3, multiclass
D55V4, multiclass
D55V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              55                91
  CLUS_2              43                86
  CLUS_3              37                78
D55V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              54               102
  CLUS_2              36                72
  CLUS_3              45                81
D55V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              83               152
  CLUS_2              30               125
  CLUS_3             148               286
D55V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1             140               273
  CLUS_2              57               159
  CLUS_3              64               131
D55V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              41               159
  CLUS_2             137               286
  CLUS_3              92               157
D55V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              68               136
  CLUS_2             176               433
  CLUS_3              26                33

Clustering(56) Variable = 8q loss mutation analysis
D56V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              17               239
  CLUS_2               4                88
  CLUS_3               7               152
D56V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               5               116
  CLUS_2              17               235
  CLUS_3               6               128
D56V3, multiclass
D56V4, multiclass
D56V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               9               137
  CLUS_2               8               121
  CLUS_3               5               110
D56V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              10               146
  CLUS_2               6               102
  CLUS_3               6               120
D56V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              15               220
  CLUS_2               2               153
  CLUS_3              27               407
D56V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              23               390
  CLUS_2               9               207
  CLUS_3              12               183
D56V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4               196
  CLUS_2              25               398
  CLUS_3              14               235
D56V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              10               194
  CLUS_2              30               579
  CLUS_3               3                56

Clustering(57) Variable = 9p loss mutation analysis
D57V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              55               201
  CLUS_2              12                80
  CLUS_3              47               112
D57V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              25                96
  CLUS_2              73               179
  CLUS_3              16               118
D57V3, multiclass
D57V4, multiclass
D57V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              44               102
  CLUS_2              24               105
  CLUS_3              21                94
D57V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              38               118
  CLUS_2              22                86
  CLUS_3              29                97
D57V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              55               180
  CLUS_2              12               143
  CLUS_3             113               321
D57V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1             100               313
  CLUS_2              36               180
  CLUS_3              44               151
D57V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              18               182
  CLUS_2              93               330
  CLUS_3              70               179
D57V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              50               154
  CLUS_2             111               498
  CLUS_3              20                39

Clustering(58) Variable = 9q loss mutation analysis
D58V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              46               210
  CLUS_2               7                85
  CLUS_3              37               122
D58V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              24                97
  CLUS_2              57               195
  CLUS_3               9               125
D58V3, multiclass
D58V4, multiclass
D58V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              36               110
  CLUS_2              18               111
  CLUS_3              13               102
D58V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              25               131
  CLUS_2              14                94
  CLUS_3              28                98
D58V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              51               184
  CLUS_2               4               151
  CLUS_3              81               353
D58V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              79               334
  CLUS_2              18               198
  CLUS_3              39               156
D58V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               8               192
  CLUS_2              64               359
  CLUS_3              66               183
D58V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              51               153
  CLUS_2              76               533
  CLUS_3              11                48

Clustering(59) Variable = 10p loss mutation analysis
D59V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               24                232
  CLUS_2                3                 89
  CLUS_3               19                140
D59V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                9                112
  CLUS_2               31                221
  CLUS_3                6                128
D59V3, multiclass
D59V4, multiclass
D59V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               15                131
  CLUS_2               13                116
  CLUS_3                8                107
D59V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               18                138
  CLUS_2                7                101
  CLUS_3               11                115
D59V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               23                212
  CLUS_2                2                153
  CLUS_3               44                390
D59V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               41                372
  CLUS_2               12                204
  CLUS_3               16                179
D59V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                5                195
  CLUS_2               40                383
  CLUS_3               24                225
D59V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               13                191
  CLUS_2               48                561
  CLUS_3                8                 51

Clustering(60) Variable = 10q loss mutation analysis
D60V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               30                226
  CLUS_2                6                 86
  CLUS_3               32                127
D60V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               20                101
  CLUS_2               41                211
  CLUS_3                7                127
D60V3, multiclass
D60V4, multiclass
D60V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               31                115
  CLUS_2               16                113
  CLUS_3                8                107
D60V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               26                130
  CLUS_2                8                100
  CLUS_3               21                105
D60V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               40                195
  CLUS_2                4                151
  CLUS_3               60                374
D60V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               56                357
  CLUS_2               17                199
  CLUS_3               31                164
D60V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               13                187
  CLUS_2               49                374
  CLUS_3               43                206
D60V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               30                174
  CLUS_2               62                547
  CLUS_3               13                 46

Clustering(61) Variable = 11p loss mutation analysis
D61V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               48                208
  CLUS_2               15                 77
  CLUS_3               30                129
D61V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               25                 96
  CLUS_2               50                202
  CLUS_3               18                116
D61V3, multiclass
D61V4, multiclass
D61V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               34                112
  CLUS_2               21                108
  CLUS_3               16                 99
D61V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               23                133
  CLUS_2               15                 93
  CLUS_3               33                 93
D61V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               47                188
  CLUS_2               13                142
  CLUS_3               80                354
D61V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               75                338
  CLUS_2               25                191
  CLUS_3               40                155
D61V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               16                184
  CLUS_2               74                349
  CLUS_3               56                193
D61V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               41                163
  CLUS_2               97                512
  CLUS_3                8                 51

Clustering(62) Variable = 11q loss mutation analysis
D62V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               95                161
  CLUS_2               18                 74
  CLUS_3               30                129
D62V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               21                100
  CLUS_2               87                165
  CLUS_3               35                 99
D62V3, multiclass
D62V4, multiclass
D62V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               32                114
  CLUS_2               41                 88
  CLUS_3               32                 83
D62V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               44                112
  CLUS_2               34                 74
  CLUS_3               27                 99
D62V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               38                197
  CLUS_2               35                120
  CLUS_3              145                289
D62V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1              126                287
  CLUS_2               61                155
  CLUS_3               31                164
D62V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               37                163
  CLUS_2              130                293
  CLUS_3               57                192
D62V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               35                169
  CLUS_2              172                437
  CLUS_3               17                 42

Clustering(63) Variable = 12p loss mutation analysis
D63V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               15                241
  CLUS_2                6                 86
  CLUS_3               20                139
D63V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               14                107
  CLUS_2               20                232
  CLUS_3                7                127
D63V3, multiclass
D63V4, multiclass
D63V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               18                128
  CLUS_2                9                120
  CLUS_3                7                108
D63V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               11                145
  CLUS_2                8                100
  CLUS_3               15                111
D63V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               33                202
  CLUS_2                8                147
  CLUS_3               21                413
D63V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               23                390
  CLUS_2               13                203
  CLUS_3               26                169
D63V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                8                192
  CLUS_2               28                395
  CLUS_3               29                220
D63V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               22                182
  CLUS_2               36                573
  CLUS_3                7                 52

Clustering(64) Variable = 12q loss mutation analysis
D64V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                8                248
  CLUS_2                7                 85
  CLUS_3               18                141
D64V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               18                103
  CLUS_2               12                240
  CLUS_3                3                131
D64V3, multiclass
D64V4, multiclass
D64V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               18                128
  CLUS_2                6                123
  CLUS_3                3                112
D64V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                150
  CLUS_2                4                104
  CLUS_3               17                109
D64V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               31                204
  CLUS_2                2                153
  CLUS_3               13                421
D64V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               12                401
  CLUS_2                6                210
  CLUS_3               28                167
D64V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                194
  CLUS_2               14                409
  CLUS_3               30                219
D64V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               26                178
  CLUS_2               21                588
  CLUS_3                3                 56

Clustering(65) Variable = 13q loss mutation analysis
D65V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               84                172
  CLUS_2               18                 74
  CLUS_3               56                103
D65V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               42                 79
  CLUS_2               92                160
  CLUS_3               24                110
D65V3, multiclass
D65V4, multiclass
D65V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               46                100
  CLUS_2               43                 86
  CLUS_3               34                 81
D65V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               53                103
  CLUS_2               30                 78
  CLUS_3               40                 86
D65V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               79                156
  CLUS_2               27                128
  CLUS_3              146                288
D65V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1              141                272
  CLUS_2               47                169
  CLUS_3               64                131
D65V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               26                174
  CLUS_2              142                281
  CLUS_3               91                158
D65V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               61                143
  CLUS_2              174                435
  CLUS_3               24                 35

Clustering(66) Variable = 14q loss mutation analysis
D66V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               25                231
  CLUS_2                7                 85
  CLUS_3               46                113
D66V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               38                 83
  CLUS_2               33                219
  CLUS_3                7                127
D66V3, multiclass
D66V4, multiclass
D66V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               39                107
  CLUS_2               12                117
  CLUS_3               12                103
D66V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               18                138
  CLUS_2                9                 99
  CLUS_3               36                 90
D66V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               65                170
  CLUS_2                7                148
  CLUS_3               51                383
D66V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               53                360
  CLUS_2               11                205
  CLUS_3               59                136
D66V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               13                187
  CLUS_2               40                383
  CLUS_3               72                177
D66V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               65                139
  CLUS_2               52                557
  CLUS_3                8                 51

Clustering(67) Variable = 15q loss mutation analysis
D67V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               39                217
  CLUS_2               17                 75
  CLUS_3               44                115
D67V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               37                 84
  CLUS_2               50                202
  CLUS_3               13                121
D67V3, multiclass
D67V4, multiclass
D67V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               38                108
  CLUS_2               24                105
  CLUS_3               19                 96
D67V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               27                129
  CLUS_2               16                 92
  CLUS_3               38                 88
D67V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               61                174
  CLUS_2               13                142
  CLUS_3               74                360
D67V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               71                342
  CLUS_2               26                190
  CLUS_3               51                144
D67V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               16                184
  CLUS_2               70                353
  CLUS_3               69                180
D67V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               51                153
  CLUS_2               82                527
  CLUS_3               22                 37

Clustering(68) Variable = 16p loss mutation analysis
D68V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               17                239
  CLUS_2                4                 88
  CLUS_3               19                140
D68V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               14                107
  CLUS_2               22                230
  CLUS_3                4                130
D68V3, multiclass
D68V4, multiclass
D68V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               18                128
  CLUS_2                7                122
  CLUS_3                7                108
D68V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               11                145
  CLUS_2                6                102
  CLUS_3               15                111
D68V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               23                212
  CLUS_2                2                153
  CLUS_3               27                407
D68V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               25                388
  CLUS_2                6                210
  CLUS_3               21                174
D68V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                5                195
  CLUS_2               22                401
  CLUS_3               27                222
D68V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               22                182
  CLUS_2               26                583
  CLUS_3                6                 53

Clustering(69) Variable = 16q loss mutation analysis
D69V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1              157                 99
  CLUS_2               37                 55
  CLUS_3               43                116
D69V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               21                100
  CLUS_2              141                111
  CLUS_3               75                 59
D69V3, multiclass
D69V4, multiclass
D69V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               40                106
  CLUS_2               75                 54
  CLUS_3               56                 59
D69V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               91                 65
  CLUS_2               55                 53
  CLUS_3               25                101
D69V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               47                188
  CLUS_2               78                 77
  CLUS_3              239                195
D69V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1              230                183
  CLUS_2              102                114
  CLUS_3               32                163
D69V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               77                123
  CLUS_2              249                174
  CLUS_3               58                191
D69V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               37                167
  CLUS_2              328                281
  CLUS_3               19                 40

Clustering(70) Variable = 17p loss mutation analysis
D70V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              104                152
  CLUS_2               33                 59
  CLUS_3               81                 78
D70V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               56                 65
  CLUS_2              107                145
  CLUS_3               55                 79
D70V3, multiclass
D70V4, multiclass
D70V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               78                 68
  CLUS_2               44                 85
  CLUS_3               40                 75
D70V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               64                 92
  CLUS_2               38                 70
  CLUS_3               60                 66
D70V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              106                129
  CLUS_2               56                 99
  CLUS_3              181                253
D70V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              169                244
  CLUS_2               92                124
  CLUS_3               82                113
D70V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               57                143
  CLUS_2              179                244
  CLUS_3              123                126
D70V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               84                120
  CLUS_2              241                368
  CLUS_3               34                 25

Clustering(71) Variable = 17q loss mutation analysis
D71V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               25                231
  CLUS_2               14                 78
  CLUS_3               52                107
D71V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               41                 80
  CLUS_2               38                214
  CLUS_3               12                122
D71V3, multiclass
D71V4, multiclass
D71V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               51                 95
  CLUS_2                6                123
  CLUS_3               19                 96
D71V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               15                141
  CLUS_2               17                 91
  CLUS_3               44                 82
D71V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               71                164
  CLUS_2               13                142
  CLUS_3               49                385
D71V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               52                361
  CLUS_2               27                189
  CLUS_3               54                141
D71V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               18                182
  CLUS_2               48                375
  CLUS_3               70                179
D71V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               54                150
  CLUS_2               69                540
  CLUS_3               13                 46

Clustering(72) Variable = 18p loss mutation analysis
D72V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               51                205
  CLUS_2               13                 79
  CLUS_3               42                117
D72V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               24                 97
  CLUS_2               62                190
  CLUS_3               20                114
D72V3, multiclass
D72V4, multiclass
D72V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               31                115
  CLUS_2               26                103
  CLUS_3               24                 91
D72V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               32                124
  CLUS_2               22                 86
  CLUS_3               27                 99
D72V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               51                184
  CLUS_2               19                136
  CLUS_3               89                345
D72V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               86                327
  CLUS_2               38                178
  CLUS_3               35                160
D72V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               27                173
  CLUS_2               91                332
  CLUS_3               52                197
D72V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               29                175
  CLUS_2              124                485
  CLUS_3               17                 42

Clustering(73) Variable = 18q loss mutation analysis
D73V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               49                207
  CLUS_2               11                 81
  CLUS_3               44                115
D73V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               24                 97
  CLUS_2               60                192
  CLUS_3               20                114
D73V3, multiclass
D73V4, multiclass
D73V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               32                114
  CLUS_2               26                103
  CLUS_3               19                 96
D73V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               33                123
  CLUS_2               19                 89
  CLUS_3               25                101
D73V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               51                184
  CLUS_2               16                139
  CLUS_3               94                340
D73V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               92                321
  CLUS_2               35                181
  CLUS_3               34                161
D73V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               28                172
  CLUS_2               91                332
  CLUS_3               54                195
D73V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               37                167
  CLUS_2              119                490
  CLUS_3               17                 42

Clustering(74) Variable = 19p loss mutation analysis
D74V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               19                237
  CLUS_2                4                 88
  CLUS_3               18                141
D74V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                8                113
  CLUS_2               31                221
  CLUS_3                2                132
D74V3, multiclass
D74V4, multiclass
D74V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               16                130
  CLUS_2               11                118
  CLUS_3                8                107
D74V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               11                145
  CLUS_2                7                101
  CLUS_3               17                109
D74V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               23                212
  CLUS_2                2                153
  CLUS_3               38                396
D74V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               42                371
  CLUS_2                6                210
  CLUS_3               15                180
D74V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                196
  CLUS_2               33                390
  CLUS_3               26                223
D74V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               14                190
  CLUS_2               41                568
  CLUS_3                8                 51

Clustering(75) Variable = 19q loss mutation analysis
D75V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               17                239
  CLUS_2                2                 90
  CLUS_3               14                145
D75V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                7                114
  CLUS_2               26                226
  CLUS_3                0                134
D75V3, multiclass
D75V4, multiclass
D75V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               14                132
  CLUS_2                8                121
  CLUS_3                4                111
D75V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                9                147
  CLUS_2                4                104
  CLUS_3               13                113
D75V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               18                217
  CLUS_2                0                155
  CLUS_3               31                403
D75V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               34                379
  CLUS_2                3                213
  CLUS_3               12                183
D75V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                196
  CLUS_2               25                398
  CLUS_3               20                229
D75V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               10                194
  CLUS_2               33                576
  CLUS_3                6                 53

Clustering(76) Variable = 20p loss mutation analysis
D76V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               14                242
  CLUS_2                4                 88
  CLUS_3               12                147
D76V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                110
  CLUS_2               17                235
  CLUS_3                2                132
D76V3, multiclass
D76V4, multiclass
D76V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                136
  CLUS_2                5                124
  CLUS_3                9                106
D76V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                7                149
  CLUS_2                7                101
  CLUS_3               10                116
D76V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               21                214
  CLUS_2                2                153
  CLUS_3               25                409
D76V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               23                390
  CLUS_2                4                212
  CLUS_3               21                174
D76V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                195
  CLUS_2               17                406
  CLUS_3               29                220
D76V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               22                182
  CLUS_2               28                581
  CLUS_3                1                 58

Clustering(77) Variable = 20q loss mutation analysis
D77V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               10                246
  CLUS_2                2                 90
  CLUS_3                5                154
D77V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                6                115
  CLUS_2               10                242
  CLUS_3                1                133
D77V3, multiclass
D77V4, multiclass
D77V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                139
  CLUS_2                3                126
  CLUS_3                3                112
D77V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                151
  CLUS_2                1                107
  CLUS_3                7                119
D77V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               14                221
  CLUS_2                1                154
  CLUS_3                9                425
D77V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                9                404
  CLUS_2                1                215
  CLUS_3               14                181
D77V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                198
  CLUS_2                7                416
  CLUS_3               19                230
D77V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               17                187
  CLUS_2                9                600
  CLUS_3                2                 57

Clustering(78) Variable = 21q loss mutation analysis
D78V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               27                229
  CLUS_2                5                 87
  CLUS_3               19                140
D78V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                8                113
  CLUS_2               30                222
  CLUS_3               13                121
D78V3, multiclass
D78V4, multiclass
D78V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               16                130
  CLUS_2               13                116
  CLUS_3               12                103
D78V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               18                138
  CLUS_2               11                 97
  CLUS_3               12                114
D78V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               22                213
  CLUS_2               11                144
  CLUS_3               49                385
D78V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               47                366
  CLUS_2               19                197
  CLUS_3               16                179
D78V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               10                190
  CLUS_2               45                378
  CLUS_3               28                221
D78V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               19                185
  CLUS_2               54                555
  CLUS_3               10                 49

Clustering(79) Variable = 22q loss mutation analysis
D79V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              110                146
  CLUS_2               31                 61
  CLUS_3               34                125
D79V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               19                102
  CLUS_2              108                144
  CLUS_3               48                 86
D79V3, multiclass
D79V4, multiclass
D79V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               37                109
  CLUS_2               62                 67
  CLUS_3               37                 78
D79V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               73                 83
  CLUS_2               38                 70
  CLUS_3               25                101
D79V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               43                192
  CLUS_2               43                112
  CLUS_3              191                243
D79V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1              171                242
  CLUS_2               75                141
  CLUS_3               31                164
D79V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               45                155
  CLUS_2              182                241
  CLUS_3               63                186
D79V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               39                165
  CLUS_2              235                374
  CLUS_3               16                 43

Clustering(80) Variable = Xq loss mutation analysis
D80V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4               252
  CLUS_2               0                92
  CLUS_3              10               149
D80V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               6               115
  CLUS_2               7               245
  CLUS_3               1               133
D80V3, multiclass
D80V4, multiclass
D80V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9               137
  CLUS_2               2               127
  CLUS_3               1               114
D80V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               6               150
  CLUS_2               1               107
  CLUS_3               5               121
D80V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              16               219
  CLUS_2               2               153
  CLUS_3              12               422
D80V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              14               399
  CLUS_2               4               212
  CLUS_3              12               183
D80V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               0               200
  CLUS_2              12               411
  CLUS_3              17               232
D80V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              12               192
  CLUS_2              14               595
  CLUS_3               3                56
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
