
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/348328/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/BRCA-TP/2710031/1.GDAC_mergedClustering.Finished/BRCA-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=BRCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=BRCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=914, in cluster file=891, common to both=891
[1]  63 891
[1] "Amp Peak  1(1p22.3) mutation analysis"
[1] 3
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          203                           688 
  AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE 
                          203                           688 
[1] "Amp Peak  2(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          645                           246 
  AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE 
                          645                           246 
[1] "Amp Peak  3(1q44) mutation analysis"
[1] 3
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        642                         249 
  AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE 
                        642                         249 
[1] "Amp Peak  4(3p26.1) mutation analysis"
[1] 3
  AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE 
                          182                           709 
  AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE 
                          182                           709 
[1] "Amp Peak  5(3q26.32) mutation analysis"
[1] 3
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           286                            605 
  AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE 
                           286                            605 
[1] "Amp Peak  6(4q13.3) mutation analysis"
[1] 3
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          141                           750 
  AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE 
                          141                           750 
[1] "Amp Peak  7(6p23) mutation analysis"
[1] 3
  AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE 
                        235                         656 
  AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE 
                        235                         656 
[1] "Amp Peak  8(6q21) mutation analysis"
[1] 3
  AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE 
                        165                         726 
  AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE 
                        165                         726 
[1] "Amp Peak  9(8p11.23) mutation analysis"
[1] 3
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                           335                            556 
  AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE 
                           335                            556 
[1] "Amp Peak 10(8p11.21) mutation analysis"
[1] 3
  AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE 
                           345                            546 
  AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE 
                           345                            546 
[1] "Amp Peak 11(8q24.21) mutation analysis"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           573                            318 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                           573                            318 
[1] "Amp Peak 12(10p15.1) mutation analysis"
[1] 3
  AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE 
                           253                            638 
  AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE 
                           253                            638 
[1] "Amp Peak 13(10q22.3) mutation analysis"
[1] 3
  AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE 
                           129                            762 
  AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE 
                           129                            762 
[1] "Amp Peak 14(11p13) mutation analysis"
[1] 3
  AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE 
                         186                          705 
  AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE 
                         186                          705 
[1] "Amp Peak 15(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                           340                            551 
  AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE 
                           340                            551 
[1] "Amp Peak 16(11q14.1) mutation analysis"
[1] 3
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           220                            671 
  AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE 
                           220                            671 
[1] "Amp Peak 17(12p13.33) mutation analysis"
[1] 3
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            232                             659 
  AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE 
                            232                             659 
[1] "Amp Peak 18(12q15) mutation analysis"
[1] 3
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                         228                          663 
  AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE 
                         228                          663 
[1] "Amp Peak 19(13q12.3) mutation analysis"
[1] 3
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                           125                            766 
  AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE 
                           125                            766 
[1] "Amp Peak 20(13q34) mutation analysis"
[1] 3
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         157                          734 
  AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE 
                         157                          734 
[1] "Amp Peak 21(14q21.1) mutation analysis"
[1] 3
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           179                            712 
  AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE 
                           179                            712 
[1] "Amp Peak 22(15q26.3) mutation analysis"
[1] 3
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           162                            729 
  AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE 
                           162                            729 
[1] "Amp Peak 23(17p11.2) mutation analysis"
[1] 3
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           124                            767 
  AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE 
                           124                            767 
[1] "Amp Peak 24(17q12) mutation analysis"
[1] 3
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         289                          602 
  AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE 
                         289                          602 
[1] "Amp Peak 25(17q23.1) mutation analysis"
[1] 3
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           367                            524 
  AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE 
                           367                            524 
[1] "Amp Peak 26(19q12) mutation analysis"
[1] 3
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         231                          660 
  AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE 
                         231                          660 
[1] "Amp Peak 27(19q13.42) mutation analysis"
[1] 3
  AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE 
                            232                             659 
  AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE 
                            232                             659 
[1] "Amp Peak 28(20q13.2) mutation analysis"
[1] 3
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           455                            436 
  AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE 
                           455                            436 
[1] "Del Peak  1(1p36.13) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           373                            518 
  DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE 
                           373                            518 
[1] "Del Peak  2(1p21.2) mutation analysis"
[1] 3
  DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE 
                          301                           590 
  DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE 
                          301                           590 
[1] "Del Peak  3(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          263                           628 
  DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE 
                          263                           628 
[1] "Del Peak  4(3p14.3) mutation analysis"
[1] 3
  DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE 
                          274                           617 
  DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE 
                          274                           617 
[1] "Del Peak  5(4p16.3) mutation analysis"
[1] 3
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          279                           612 
  DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE 
                          279                           612 
[1] "Del Peak  6(4q35.2) mutation analysis"
[1] 3
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                          280                           611 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                          280                           611 
[1] "Del Peak  7(5q11.2) mutation analysis"
[1] 3
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          231                           660 
  DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE 
                          231                           660 
[1] "Del Peak  8(5q21.3) mutation analysis"
[1] 3
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          223                           668 
  DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE 
                          223                           668 
[1] "Del Peak  9(6p25.3) mutation analysis"
[1] 3
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          167                           724 
  DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE 
                          167                           724 
[1] "Del Peak 10(6q15) mutation analysis"
[1] 3
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        293                         598 
  DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE 
                        293                         598 
[1] "Del Peak 11(6q27) mutation analysis"
[1] 3
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        303                         588 
  DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE 
                        303                         588 
[1] "Del Peak 12(7p22.3) mutation analysis"
[1] 3
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          117                           774 
  DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE 
                          117                           774 
[1] "Del Peak 13(7q36.1) mutation analysis"
[1] 3
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          173                           718 
  DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE 
                          173                           718 
[1] "Del Peak 14(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          469                           422 
  DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE 
                          469                           422 
[1] "Del Peak 15(8p11.21) mutation analysis"
[1] 3
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           170                            721 
  DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE 
                           170                            721 
[1] "Del Peak 16(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          298                           593 
  DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE 
                          298                           593 
[1] "Del Peak 17(9q21.11) mutation analysis"
[1] 3
  DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE 
                           239                            652 
  DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE 
                           239                            652 
[1] "Del Peak 18(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            258                             633 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                            258                             633 
[1] "Del Peak 19(10q26.3) mutation analysis"
[1] 3
  DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE 
                           259                            632 
  DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE 
                           259                            632 
[1] "Del Peak 20(11p15.5) mutation analysis"
[1] 3
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                           259                            632 
  DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE 
                           259                            632 
[1] "Del Peak 21(11q23.2) mutation analysis"
[1] 3
  DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE 
                           442                            449 
  DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE 
                           442                            449 
[1] "Del Peak 22(12p13.1) mutation analysis"
[1] 3
  DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE 
                           156                            735 
  DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE 
                           156                            735 
[1] "Del Peak 23(12q24.31) mutation analysis"
[1] 3
  DEL PEAK 23(12Q24.31) MUTATED DEL PEAK 23(12Q24.31) WILD-TYPE 
                            162                             729 
  DEL PEAK 23(12Q24.31) MUTATED DEL PEAK 23(12Q24.31) WILD-TYPE 
                            162                             729 
[1] "Del Peak 24(13q14.2) mutation analysis"
[1] 3
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                           407                            484 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                           407                            484 
[1] "Del Peak 25(14q24.3) mutation analysis"
[1] 3
  DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE 
                           286                            605 
  DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE 
                           286                            605 
[1] "Del Peak 26(15q13.1) mutation analysis"
[1] 3
  DEL PEAK 26(15Q13.1) MUTATED DEL PEAK 26(15Q13.1) WILD-TYPE 
                           310                            581 
  DEL PEAK 26(15Q13.1) MUTATED DEL PEAK 26(15Q13.1) WILD-TYPE 
                           310                            581 
[1] "Del Peak 27(16q24.3) mutation analysis"
[1] 3
  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                           575                            316 
  DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE 
                           575                            316 
[1] "Del Peak 28(17p12) mutation analysis"
[1] 3
  DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE 
                         537                          354 
  DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE 
                         537                          354 
[1] "Del Peak 29(17q21.31) mutation analysis"
[1] 3
  DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE 
                            312                             579 
  DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE 
                            312                             579 
[1] "Del Peak 30(18q23) mutation analysis"
[1] 3
  DEL PEAK 30(18Q23) MUTATED DEL PEAK 30(18Q23) WILD-TYPE 
                         290                          601 
  DEL PEAK 30(18Q23) MUTATED DEL PEAK 30(18Q23) WILD-TYPE 
                         290                          601 
[1] "Del Peak 31(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE 
                           301                            590 
  DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE 
                           301                            590 
[1] "Del Peak 32(19q13.32) mutation analysis"
[1] 3
  DEL PEAK 32(19Q13.32) MUTATED DEL PEAK 32(19Q13.32) WILD-TYPE 
                            180                             711 
  DEL PEAK 32(19Q13.32) MUTATED DEL PEAK 32(19Q13.32) WILD-TYPE 
                            180                             711 
[1] "Del Peak 33(20p13) mutation analysis"
[1] 3
  DEL PEAK 33(20P13) MUTATED DEL PEAK 33(20P13) WILD-TYPE 
                         132                          759 
  DEL PEAK 33(20P13) MUTATED DEL PEAK 33(20P13) WILD-TYPE 
                         132                          759 
[1] "Del Peak 34(21q11.2) mutation analysis"
[1] 3
  DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE 
                           181                            710 
  DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE 
                           181                            710 
[1] "Del Peak 35(22q13.32) mutation analysis"
[1] 3
  DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE 
                            399                             492 
  DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE 
                            399                             492 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 891 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 891 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1p22.3) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          44                           212
  CLUS_2                          12                            80
  CLUS_3                          59                           100
D1V2, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          55                            66
  CLUS_2                          49                           203
  CLUS_3                          11                           123
D1V3, multiclass
D1V4, multiclass
D1V5, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          52                            94
  CLUS_2                          27                           102
  CLUS_3                          16                            99
D1V6, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          31                           125
  CLUS_2                          12                            96
  CLUS_3                          52                            74
D1V7, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          96                           139
  CLUS_2                          15                           140
  CLUS_3                          70                           364
D1V8, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          71                           342
  CLUS_2                          23                           193
  CLUS_3                          87                           108
D1V9, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          32                           168
  CLUS_2                          65                           358
  CLUS_3                         103                           146
D1V10, multiclass
        clus
vv       AMP PEAK  1(1P22.3) MUTATED AMP PEAK  1(1P22.3) WILD-TYPE
  CLUS_1                          96                           108
  CLUS_2                          93                           516
  CLUS_3                          11                            48

Clustering(2) Variable = Amp Peak  2(1q21.3) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         182                            74
  CLUS_2                          63                            29
  CLUS_3                         130                            29
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         103                            18
  CLUS_2                         189                            63
  CLUS_3                          83                            51
D2V3, multiclass
D2V4, multiclass
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         117                            29
  CLUS_2                          94                            35
  CLUS_3                          78                            37
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         115                            41
  CLUS_2                          70                            38
  CLUS_3                         104                            22
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         191                            44
  CLUS_2                          99                            56
  CLUS_3                         305                           129
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         297                           116
  CLUS_2                         140                            76
  CLUS_3                         158                            37
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         130                            70
  CLUS_2                         294                           129
  CLUS_3                         205                            44
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q21.3) MUTATED AMP PEAK  2(1Q21.3) WILD-TYPE
  CLUS_1                         165                            39
  CLUS_2                         421                           188
  CLUS_3                          43                            16

Clustering(3) Variable = Amp Peak  3(1q44) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       181                          75
  CLUS_2                        66                          26
  CLUS_3                       122                          37
D3V2, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                        95                          26
  CLUS_2                       186                          66
  CLUS_3                        88                          46
D3V3, multiclass
D3V4, multiclass
D3V5, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       108                          38
  CLUS_2                        93                          36
  CLUS_3                        83                          32
D3V6, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       113                          43
  CLUS_2                        74                          34
  CLUS_3                        97                          29
D3V7, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       178                          57
  CLUS_2                       110                          45
  CLUS_3                       306                         128
D3V8, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       297                         116
  CLUS_2                       151                          65
  CLUS_3                       146                          49
D3V9, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       141                          59
  CLUS_2                       299                         124
  CLUS_3                       187                          62
D3V10, multiclass
        clus
vv       AMP PEAK  3(1Q44) MUTATED AMP PEAK  3(1Q44) WILD-TYPE
  CLUS_1                       152                          52
  CLUS_2                       433                         176
  CLUS_3                        42                          17

Clustering(4) Variable = Amp Peak  4(3p26.1) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          49                           207
  CLUS_2                          17                            75
  CLUS_3                          56                           103
D4V2, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          35                            86
  CLUS_2                          73                           179
  CLUS_3                          14                           120
D4V3, multiclass
D4V4, multiclass
D4V5, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          49                            97
  CLUS_2                          27                           102
  CLUS_3                          20                            95
D4V6, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          43                           113
  CLUS_2                          15                            93
  CLUS_3                          38                            88
D4V7, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          75                           160
  CLUS_2                           9                           146
  CLUS_3                          88                           346
D4V8, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          90                           323
  CLUS_2                          25                           191
  CLUS_3                          57                           138
D4V9, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          23                           177
  CLUS_2                          69                           354
  CLUS_3                          82                           167
D4V10, multiclass
        clus
vv       AMP PEAK  4(3P26.1) MUTATED AMP PEAK  4(3P26.1) WILD-TYPE
  CLUS_1                          64                           140
  CLUS_2                          94                           515
  CLUS_3                          16                            43

Clustering(5) Variable = Amp Peak  5(3q26.32) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           65                            191
  CLUS_2                           23                             69
  CLUS_3                           91                             68
D5V2, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           70                             51
  CLUS_2                           85                            167
  CLUS_3                           24                            110
D5V3, multiclass
D5V4, multiclass
D5V5, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           76                             70
  CLUS_2                           35                             94
  CLUS_3                           28                             87
D5V6, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           48                            108
  CLUS_2                           25                             83
  CLUS_3                           66                             60
D5V7, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          137                             98
  CLUS_2                           19                            136
  CLUS_3                          119                            315
D5V8, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          116                            297
  CLUS_2                           40                            176
  CLUS_3                          119                             76
D5V9, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                           45                            155
  CLUS_2                          100                            323
  CLUS_3                          133                            116
D5V10, multiclass
        clus
vv       AMP PEAK  5(3Q26.32) MUTATED AMP PEAK  5(3Q26.32) WILD-TYPE
  CLUS_1                          121                             83
  CLUS_2                          136                            473
  CLUS_3                           21                             38

Clustering(6) Variable = Amp Peak  6(4q13.3) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          34                           222
  CLUS_2                           8                            84
  CLUS_3                          40                           119
D6V2, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          28                            93
  CLUS_2                          45                           207
  CLUS_3                           9                           125
D6V3, multiclass
D6V4, multiclass
D6V5, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          31                           115
  CLUS_2                          15                           114
  CLUS_3                          16                            99
D6V6, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          25                           131
  CLUS_2                          14                            94
  CLUS_3                          23                           103
D6V7, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          57                           178
  CLUS_2                          10                           145
  CLUS_3                          69                           365
D6V8, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          60                           353
  CLUS_2                          26                           190
  CLUS_3                          50                           145
D6V9, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          26                           174
  CLUS_2                          54                           369
  CLUS_3                          59                           190
D6V10, multiclass
        clus
vv       AMP PEAK  6(4Q13.3) MUTATED AMP PEAK  6(4Q13.3) WILD-TYPE
  CLUS_1                          57                           147
  CLUS_2                          70                           539
  CLUS_3                          12                            47

Clustering(7) Variable = Amp Peak  7(6p23) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        51                         205
  CLUS_2                        15                          77
  CLUS_3                        78                          81
D7V2, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        57                          64
  CLUS_2                        70                         182
  CLUS_3                        17                         117
D7V3, multiclass
D7V4, multiclass
D7V5, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        64                          82
  CLUS_2                        23                         106
  CLUS_3                        23                          92
D7V6, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        32                         124
  CLUS_2                        24                          84
  CLUS_3                        54                          72
D7V7, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                       105                         130
  CLUS_2                        16                         139
  CLUS_3                       100                         334
D7V8, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        96                         317
  CLUS_2                        36                         180
  CLUS_3                        89                         106
D7V9, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        29                         171
  CLUS_2                        76                         347
  CLUS_3                       118                         131
D7V10, multiclass
        clus
vv       AMP PEAK  7(6P23) MUTATED AMP PEAK  7(6P23) WILD-TYPE
  CLUS_1                        97                         107
  CLUS_2                       106                         503
  CLUS_3                        20                          39

Clustering(8) Variable = Amp Peak  8(6q21) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        24                         232
  CLUS_2                        12                          80
  CLUS_3                        68                          91
D8V2, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        50                          71
  CLUS_2                        42                         210
  CLUS_3                        12                         122
D8V3, multiclass
D8V4, multiclass
D8V5, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        54                          92
  CLUS_2                        12                         117
  CLUS_3                        15                         100
D8V6, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        20                         136
  CLUS_2                        14                          94
  CLUS_3                        47                          79
D8V7, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        97                         138
  CLUS_2                         7                         148
  CLUS_3                        51                         383
D8V8, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        57                         356
  CLUS_2                        17                         199
  CLUS_3                        81                         114
D8V9, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        24                         176
  CLUS_2                        36                         387
  CLUS_3                        96                         153
D8V10, multiclass
        clus
vv       AMP PEAK  8(6Q21) MUTATED AMP PEAK  8(6Q21) WILD-TYPE
  CLUS_1                        88                         116
  CLUS_2                        52                         557
  CLUS_3                        16                          43

Clustering(9) Variable = Amp Peak  9(8p11.23) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                          115                            141
  CLUS_2                           31                             61
  CLUS_3                           54                            105
D9V2, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           37                             84
  CLUS_2                          116                            136
  CLUS_3                           47                             87
D9V3, multiclass
D9V4, multiclass
D9V5, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           48                             98
  CLUS_2                           51                             78
  CLUS_3                           55                             60
D9V6, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           70                             86
  CLUS_2                           48                             60
  CLUS_3                           36                             90
D9V7, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           76                            159
  CLUS_2                           43                            112
  CLUS_3                          200                            234
D9V8, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                          184                            229
  CLUS_2                           72                            144
  CLUS_3                           63                            132
D9V9, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           66                            134
  CLUS_2                          172                            251
  CLUS_3                           90                            159
D9V10, multiclass
        clus
vv       AMP PEAK  9(8P11.23) MUTATED AMP PEAK  9(8P11.23) WILD-TYPE
  CLUS_1                           69                            135
  CLUS_2                          244                            365
  CLUS_3                           15                             44

Clustering(10) Variable = Amp Peak 10(8p11.21) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                          111                            145
  CLUS_2                           31                             61
  CLUS_3                           63                             96
D10V2, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           50                             71
  CLUS_2                          110                            142
  CLUS_3                           45                             89
D10V3, multiclass
D10V4, multiclass
D10V5, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           55                             91
  CLUS_2                           54                             75
  CLUS_3                           46                             69
D10V6, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           66                             90
  CLUS_2                           40                             68
  CLUS_3                           49                             77
D10V7, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                          102                            133
  CLUS_2                           37                            118
  CLUS_3                          184                            250
D10V8, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                          179                            234
  CLUS_2                           59                            157
  CLUS_3                           85                            110
D10V9, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           66                            134
  CLUS_2                          159                            264
  CLUS_3                          111                            138
D10V10, multiclass
        clus
vv       AMP PEAK 10(8P11.21) MUTATED AMP PEAK 10(8P11.21) WILD-TYPE
  CLUS_1                           87                            117
  CLUS_2                          231                            378
  CLUS_3                           18                             41

Clustering(11) Variable = Amp Peak 11(8q24.21) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          154                            102
  CLUS_2                           53                             39
  CLUS_3                          139                             20
D11V2, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          104                             17
  CLUS_2                          178                             74
  CLUS_3                           64                             70
D11V3, multiclass
D11V4, multiclass
D11V5, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          124                             22
  CLUS_2                           69                             60
  CLUS_3                           74                             41
D11V6, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           98                             58
  CLUS_2                           61                             47
  CLUS_3                          108                             18
D11V7, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          200                             35
  CLUS_2                           61                             94
  CLUS_3                          275                            159
D11V8, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          261                            152
  CLUS_2                          110                            106
  CLUS_3                          165                             30
D11V9, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                           97                            103
  CLUS_2                          240                            183
  CLUS_3                          221                             28
D11V10, multiclass
        clus
vv       AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE
  CLUS_1                          179                             25
  CLUS_2                          333                            276
  CLUS_3                           46                             13

Clustering(12) Variable = Amp Peak 12(10p15.1) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           43                            213
  CLUS_2                           25                             67
  CLUS_3                           91                             68
D12V2, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           79                             42
  CLUS_2                           60                            192
  CLUS_3                           20                            114
D12V3, multiclass
D12V4, multiclass
D12V5, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           77                             69
  CLUS_2                           21                            108
  CLUS_3                           29                             86
D12V6, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           28                            128
  CLUS_2                           26                             82
  CLUS_3                           73                             53
D12V7, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                          136                             99
  CLUS_2                           22                            133
  CLUS_3                           78                            356
D12V8, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           72                            341
  CLUS_2                           44                            172
  CLUS_3                          120                             75
D12V9, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                           43                            157
  CLUS_2                           64                            359
  CLUS_3                          137                            112
D12V10, multiclass
        clus
vv       AMP PEAK 12(10P15.1) MUTATED AMP PEAK 12(10P15.1) WILD-TYPE
  CLUS_1                          126                             78
  CLUS_2                           95                            514
  CLUS_3                           23                             36

Clustering(13) Variable = Amp Peak 13(10q22.3) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           25                            231
  CLUS_2                           15                             77
  CLUS_3                           42                            117
D13V2, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           26                             95
  CLUS_2                           42                            210
  CLUS_3                           14                            120
D13V3, multiclass
D13V4, multiclass
D13V5, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           37                            109
  CLUS_2                           13                            116
  CLUS_3                           17                             98
D13V6, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           20                            136
  CLUS_2                           15                             93
  CLUS_3                           32                             94
D13V7, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           61                            174
  CLUS_2                           11                            144
  CLUS_3                           50                            384
D13V8, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           56                            357
  CLUS_2                           22                            194
  CLUS_3                           44                            151
D13V9, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           17                            183
  CLUS_2                           49                            374
  CLUS_3                           59                            190
D13V10, multiclass
        clus
vv       AMP PEAK 13(10Q22.3) MUTATED AMP PEAK 13(10Q22.3) WILD-TYPE
  CLUS_1                           41                            163
  CLUS_2                           68                            541
  CLUS_3                           16                             43

Clustering(14) Variable = Amp Peak 14(11p13) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         45                          211
  CLUS_2                         16                           76
  CLUS_3                         51                          108
D14V2, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         34                           87
  CLUS_2                         55                          197
  CLUS_3                         23                          111
D14V3, multiclass
D14V4, multiclass
D14V5, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         42                          104
  CLUS_2                         23                          106
  CLUS_3                         25                           90
D14V6, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         29                          127
  CLUS_2                         25                           83
  CLUS_3                         36                           90
D14V7, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         70                          165
  CLUS_2                         18                          137
  CLUS_3                         92                          342
D14V8, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         84                          329
  CLUS_2                         40                          176
  CLUS_3                         56                          139
D14V9, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         28                          172
  CLUS_2                         78                          345
  CLUS_3                         76                          173
D14V10, multiclass
        clus
vv       AMP PEAK 14(11P13) MUTATED AMP PEAK 14(11P13) WILD-TYPE
  CLUS_1                         61                          143
  CLUS_2                        101                          508
  CLUS_3                         20                           39

Clustering(15) Variable = Amp Peak 15(11q13.3) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                          110                            146
  CLUS_2                           31                             61
  CLUS_3                           70                             89
D15V2, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           40                             81
  CLUS_2                          119                            133
  CLUS_3                           52                             82
D15V3, multiclass
D15V4, multiclass
D15V5, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           60                             86
  CLUS_2                           55                             74
  CLUS_3                           48                             67
D15V6, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           73                             83
  CLUS_2                           45                             63
  CLUS_3                           45                             81
D15V7, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           92                            143
  CLUS_2                           48                            107
  CLUS_3                          184                            250
D15V8, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                          172                            241
  CLUS_2                           83                            133
  CLUS_3                           69                            126
D15V9, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           56                            144
  CLUS_2                          168                            255
  CLUS_3                          108                            141
D15V10, multiclass
        clus
vv       AMP PEAK 15(11Q13.3) MUTATED AMP PEAK 15(11Q13.3) WILD-TYPE
  CLUS_1                           76                            128
  CLUS_2                          226                            383
  CLUS_3                           30                             29

Clustering(16) Variable = Amp Peak 16(11q14.1) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           58                            198
  CLUS_2                           24                             68
  CLUS_3                           57                            102
D16V2, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           43                             78
  CLUS_2                           63                            189
  CLUS_3                           33                            101
D16V3, multiclass
D16V4, multiclass
D16V5, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           50                             96
  CLUS_2                           28                            101
  CLUS_3                           32                             83
D16V6, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           38                            118
  CLUS_2                           29                             79
  CLUS_3                           43                             83
D16V7, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           83                            152
  CLUS_2                           27                            128
  CLUS_3                          100                            334
D16V8, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           97                            316
  CLUS_2                           44                            172
  CLUS_3                           69                            126
D16V9, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           32                            168
  CLUS_2                           89                            334
  CLUS_3                           91                            158
D16V10, multiclass
        clus
vv       AMP PEAK 16(11Q14.1) MUTATED AMP PEAK 16(11Q14.1) WILD-TYPE
  CLUS_1                           66                            138
  CLUS_2                          123                            486
  CLUS_3                           23                             36

Clustering(17) Variable = Amp Peak 17(12p13.33) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            53                             203
  CLUS_2                            14                              78
  CLUS_3                            77                              82
D17V2, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            61                              60
  CLUS_2                            72                             180
  CLUS_3                            11                             123
D17V3, multiclass
D17V4, multiclass
D17V5, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            68                              78
  CLUS_2                            30                              99
  CLUS_3                            18                              97
D17V6, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            41                             115
  CLUS_2                            16                              92
  CLUS_3                            59                              67
D17V7, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           106                             129
  CLUS_2                            12                             143
  CLUS_3                            95                             339
D17V8, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            95                             318
  CLUS_2                            26                             190
  CLUS_3                            92                             103
D17V9, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                            26                             174
  CLUS_2                            75                             348
  CLUS_3                           123                             126
D17V10, multiclass
        clus
vv       AMP PEAK 17(12P13.33) MUTATED AMP PEAK 17(12P13.33) WILD-TYPE
  CLUS_1                           104                             100
  CLUS_2                           105                             504
  CLUS_3                            15                              44

Clustering(18) Variable = Amp Peak 18(12q15) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         72                          184
  CLUS_2                         10                           82
  CLUS_3                         64                           95
D18V2, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         28                           93
  CLUS_2                        100                          152
  CLUS_3                         18                          116
D18V3, multiclass
D18V4, multiclass
D18V5, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         51                           95
  CLUS_2                         39                           90
  CLUS_3                         28                           87
D18V6, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         55                          101
  CLUS_2                         24                           84
  CLUS_3                         39                           87
D18V7, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         61                          174
  CLUS_2                         20                          135
  CLUS_3                        138                          296
D18V8, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                        129                          284
  CLUS_2                         47                          169
  CLUS_3                         43                          152
D18V9, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         21                          179
  CLUS_2                        115                          308
  CLUS_3                         85                          164
D18V10, multiclass
        clus
vv       AMP PEAK 18(12Q15) MUTATED AMP PEAK 18(12Q15) WILD-TYPE
  CLUS_1                         49                          155
  CLUS_2                        151                          458
  CLUS_3                         21                           38

Clustering(19) Variable = Amp Peak 19(13q12.3) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           33                            223
  CLUS_2                           10                             82
  CLUS_3                           37                            122
D19V2, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           24                             97
  CLUS_2                           44                            208
  CLUS_3                           12                            122
D19V3, multiclass
D19V4, multiclass
D19V5, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           33                            113
  CLUS_2                           23                            106
  CLUS_3                           10                            105
D19V6, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           27                            129
  CLUS_2                           12                             96
  CLUS_3                           27                             99
D19V7, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           45                            190
  CLUS_2                            5                            150
  CLUS_3                           70                            364
D19V8, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           63                            350
  CLUS_2                           20                            196
  CLUS_3                           37                            158
D19V9, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           12                            188
  CLUS_2                           54                            369
  CLUS_3                           55                            194
D19V10, multiclass
        clus
vv       AMP PEAK 19(13Q12.3) MUTATED AMP PEAK 19(13Q12.3) WILD-TYPE
  CLUS_1                           37                            167
  CLUS_2                           70                            539
  CLUS_3                           14                             45

Clustering(20) Variable = Amp Peak 20(13q34) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         35                          221
  CLUS_2                         15                           77
  CLUS_3                         45                          114
D20V2, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         46                           75
  CLUS_2                         40                          212
  CLUS_3                          9                          125
D20V3, multiclass
D20V4, multiclass
D20V5, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         48                           98
  CLUS_2                         22                          107
  CLUS_3                         10                          105
D20V6, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         25                          131
  CLUS_2                          8                          100
  CLUS_3                         47                           79
D20V7, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         79                          156
  CLUS_2                          5                          150
  CLUS_3                         58                          376
D20V8, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         51                          362
  CLUS_2                         18                          198
  CLUS_3                         73                          122
D20V9, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         24                          176
  CLUS_2                         42                          381
  CLUS_3                         87                          162
D20V10, multiclass
        clus
vv       AMP PEAK 20(13Q34) MUTATED AMP PEAK 20(13Q34) WILD-TYPE
  CLUS_1                         81                          123
  CLUS_2                         59                          550
  CLUS_3                         13                           46

Clustering(21) Variable = Amp Peak 21(14q21.1) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           55                            201
  CLUS_2                           11                             81
  CLUS_3                           44                            115
D21V2, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           18                            103
  CLUS_2                           73                            179
  CLUS_3                           19                            115
D21V3, multiclass
D21V4, multiclass
D21V5, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           40                            106
  CLUS_2                           24                            105
  CLUS_3                           21                             94
D21V6, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           43                            113
  CLUS_2                           16                             92
  CLUS_3                           26                            100
D21V7, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           41                            194
  CLUS_2                           16                            139
  CLUS_3                          116                            318
D21V8, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                          108                            305
  CLUS_2                           36                            180
  CLUS_3                           29                            166
D21V9, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           20                            180
  CLUS_2                           92                            331
  CLUS_3                           61                            188
D21V10, multiclass
        clus
vv       AMP PEAK 21(14Q21.1) MUTATED AMP PEAK 21(14Q21.1) WILD-TYPE
  CLUS_1                           37                            167
  CLUS_2                          116                            493
  CLUS_3                           20                             39

Clustering(22) Variable = Amp Peak 22(15q26.3) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           36                            220
  CLUS_2                           10                             82
  CLUS_3                           55                            104
D22V2, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           38                             83
  CLUS_2                           48                            204
  CLUS_3                           15                            119
D22V3, multiclass
D22V4, multiclass
D22V5, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           46                            100
  CLUS_2                           17                            112
  CLUS_3                           16                             99
D22V6, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           29                            127
  CLUS_2                           15                             93
  CLUS_3                           35                             91
D22V7, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           69                            166
  CLUS_2                           11                            144
  CLUS_3                           72                            362
D22V8, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           65                            348
  CLUS_2                           29                            187
  CLUS_3                           58                            137
D22V9, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           25                            175
  CLUS_2                           56                            367
  CLUS_3                           74                            175
D22V10, multiclass
        clus
vv       AMP PEAK 22(15Q26.3) MUTATED AMP PEAK 22(15Q26.3) WILD-TYPE
  CLUS_1                           68                            136
  CLUS_2                           75                            534
  CLUS_3                           12                             47

Clustering(23) Variable = Amp Peak 23(17p11.2) mutation analysis
D23V1, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           36                            220
  CLUS_2                            6                             86
  CLUS_3                           21                            138
D23V2, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           14                            107
  CLUS_2                           40                            212
  CLUS_3                            9                            125
D23V3, multiclass
D23V4, multiclass
D23V5, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           20                            126
  CLUS_2                           20                            109
  CLUS_3                           11                            104
D23V6, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           22                            134
  CLUS_2                           11                             97
  CLUS_3                           18                            108
D23V7, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           31                            204
  CLUS_2                           10                            145
  CLUS_3                           75                            359
D23V8, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           69                            344
  CLUS_2                           22                            194
  CLUS_3                           25                            170
D23V9, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           21                            179
  CLUS_2                           61                            362
  CLUS_3                           41                            208
D23V10, multiclass
        clus
vv       AMP PEAK 23(17P11.2) MUTATED AMP PEAK 23(17P11.2) WILD-TYPE
  CLUS_1                           27                            177
  CLUS_2                           84                            525
  CLUS_3                           12                             47

Clustering(24) Variable = Amp Peak 24(17q12) mutation analysis
D24V1, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         77                          179
  CLUS_2                         16                           76
  CLUS_3                         68                           91
D24V2, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         37                           84
  CLUS_2                        101                          151
  CLUS_3                         23                          111
D24V3, multiclass
D24V4, multiclass
D24V5, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         57                           89
  CLUS_2                         38                           91
  CLUS_3                         29                           86
D24V6, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         43                          113
  CLUS_2                         27                           81
  CLUS_3                         54                           72
D24V7, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         88                          147
  CLUS_2                         29                          126
  CLUS_3                        156                          278
D24V8, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                        154                          259
  CLUS_2                         58                          158
  CLUS_3                         61                          134
D24V9, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         50                          150
  CLUS_2                        131                          292
  CLUS_3                        101                          148
D24V10, multiclass
        clus
vv       AMP PEAK 24(17Q12) MUTATED AMP PEAK 24(17Q12) WILD-TYPE
  CLUS_1                         66                          138
  CLUS_2                        183                          426
  CLUS_3                         33                           26

Clustering(25) Variable = Amp Peak 25(17q23.1) mutation analysis
D25V1, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          107                            149
  CLUS_2                           23                             69
  CLUS_3                           80                             79
D25V2, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           46                             75
  CLUS_2                          127                            125
  CLUS_3                           37                             97
D25V3, multiclass
D25V4, multiclass
D25V5, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           68                             78
  CLUS_2                           51                             78
  CLUS_3                           41                             74
D25V6, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           70                             86
  CLUS_2                           42                             66
  CLUS_3                           48                             78
D25V7, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           98                            137
  CLUS_2                           44                            111
  CLUS_3                          205                            229
D25V8, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                          184                            229
  CLUS_2                           88                            128
  CLUS_3                           75                            120
D25V9, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           60                            140
  CLUS_2                          165                            258
  CLUS_3                          133                            116
D25V10, multiclass
        clus
vv       AMP PEAK 25(17Q23.1) MUTATED AMP PEAK 25(17Q23.1) WILD-TYPE
  CLUS_1                           94                            110
  CLUS_2                          234                            375
  CLUS_3                           30                             29

Clustering(26) Variable = Amp Peak 26(19q12) mutation analysis
D26V1, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         44                          212
  CLUS_2                         26                           66
  CLUS_3                         69                           90
D26V2, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         64                           57
  CLUS_2                         56                          196
  CLUS_3                         19                          115
D26V3, multiclass
D26V4, multiclass
D26V5, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         64                           82
  CLUS_2                         23                          106
  CLUS_3                         22                           93
D26V6, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         29                          127
  CLUS_2                         23                           85
  CLUS_3                         57                           69
D26V7, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        107                          128
  CLUS_2                         27                          128
  CLUS_3                         80                          354
D26V8, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         75                          338
  CLUS_2                         40                          176
  CLUS_3                         99                           96
D26V9, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                         43                          157
  CLUS_2                         75                          348
  CLUS_3                        108                          141
D26V10, multiclass
        clus
vv       AMP PEAK 26(19Q12) MUTATED AMP PEAK 26(19Q12) WILD-TYPE
  CLUS_1                        101                          103
  CLUS_2                        107                          502
  CLUS_3                         18                           41

Clustering(27) Variable = Amp Peak 27(19q13.42) mutation analysis
D27V1, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            54                             202
  CLUS_2                            22                              70
  CLUS_3                            63                              96
D27V2, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            45                              76
  CLUS_2                            71                             181
  CLUS_3                            23                             111
D27V3, multiclass
D27V4, multiclass
D27V5, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            56                              90
  CLUS_2                            28                             101
  CLUS_3                            24                              91
D27V6, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            39                             117
  CLUS_2                            24                              84
  CLUS_3                            45                              81
D27V7, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            81                             154
  CLUS_2                            32                             123
  CLUS_3                           107                             327
D27V8, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                           100                             313
  CLUS_2                            53                             163
  CLUS_3                            67                             128
D27V9, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            36                             164
  CLUS_2                           100                             323
  CLUS_3                            91                             158
D27V10, multiclass
        clus
vv       AMP PEAK 27(19Q13.42) MUTATED AMP PEAK 27(19Q13.42) WILD-TYPE
  CLUS_1                            71                             133
  CLUS_2                           133                             476
  CLUS_3                            23                              36

Clustering(28) Variable = Amp Peak 28(20q13.2) mutation analysis
D28V1, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          128                            128
  CLUS_2                           30                             62
  CLUS_3                          111                             48
D28V2, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           67                             54
  CLUS_2                          156                             96
  CLUS_3                           46                             88
D28V3, multiclass
D28V4, multiclass
D28V5, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           98                             48
  CLUS_2                           65                             64
  CLUS_3                           51                             64
D28V6, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           91                             65
  CLUS_2                           46                             62
  CLUS_3                           77                             49
D28V7, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          138                             97
  CLUS_2                           46                            109
  CLUS_3                          250                            184
D28V8, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          231                            182
  CLUS_2                           96                            120
  CLUS_3                          107                             88
D28V9, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                           67                            133
  CLUS_2                          215                            208
  CLUS_3                          165                             84
D28V10, multiclass
        clus
vv       AMP PEAK 28(20Q13.2) MUTATED AMP PEAK 28(20Q13.2) WILD-TYPE
  CLUS_1                          117                             87
  CLUS_2                          281                            328
  CLUS_3                           49                             10

Clustering(29) Variable = Del Peak  1(1p36.13) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          108                            148
  CLUS_2                           28                             64
  CLUS_3                           81                             78
D29V2, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           50                             71
  CLUS_2                          132                            120
  CLUS_3                           35                             99
D29V3, multiclass
D29V4, multiclass
D29V5, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           76                             70
  CLUS_2                           57                             72
  CLUS_3                           37                             78
D29V6, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           72                             84
  CLUS_2                           37                             71
  CLUS_3                           61                             65
D29V7, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          104                            131
  CLUS_2                           39                            116
  CLUS_3                          206                            228
D29V8, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                          198                            215
  CLUS_2                           74                            142
  CLUS_3                           77                            118
D29V9, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           45                            155
  CLUS_2                          179                            244
  CLUS_3                          135                            114
D29V10, multiclass
        clus
vv       DEL PEAK  1(1P36.13) MUTATED DEL PEAK  1(1P36.13) WILD-TYPE
  CLUS_1                           84                            120
  CLUS_2                          243                            366
  CLUS_3                           32                             27

Clustering(30) Variable = Del Peak  2(1p21.2) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          97                           159
  CLUS_2                          20                            72
  CLUS_3                          60                            99
D30V2, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          31                            90
  CLUS_2                         111                           141
  CLUS_3                          35                            99
D30V3, multiclass
D30V4, multiclass
D30V5, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          58                            88
  CLUS_2                          50                            79
  CLUS_3                          24                            91
D30V6, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          65                            91
  CLUS_2                          26                            82
  CLUS_3                          41                            85
D30V7, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          70                           165
  CLUS_2                          38                           117
  CLUS_3                         175                           259
D30V8, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                         164                           249
  CLUS_2                          70                           146
  CLUS_3                          49                           146
D30V9, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          47                           153
  CLUS_2                         152                           271
  CLUS_3                          93                           156
D30V10, multiclass
        clus
vv       DEL PEAK  2(1P21.2) MUTATED DEL PEAK  2(1P21.2) WILD-TYPE
  CLUS_1                          54                           150
  CLUS_2                         209                           400
  CLUS_3                          29                            30

Clustering(31) Variable = Del Peak  3(2q37.3) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          65                           191
  CLUS_2                          19                            73
  CLUS_3                          76                            83
D31V2, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          58                            63
  CLUS_2                          84                           168
  CLUS_3                          18                           116
D31V3, multiclass
D31V4, multiclass
D31V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          70                            76
  CLUS_2                          37                            92
  CLUS_3                          16                            99
D31V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          55                           101
  CLUS_2                          13                            95
  CLUS_3                          55                            71
D31V7, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         102                           133
  CLUS_2                          18                           137
  CLUS_3                         126                           308
D31V8, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                         128                           285
  CLUS_2                          37                           179
  CLUS_3                          81                           114
D31V9, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          31                           169
  CLUS_2                         110                           313
  CLUS_3                         114                           135
D31V10, multiclass
        clus
vv       DEL PEAK  3(2Q37.3) MUTATED DEL PEAK  3(2Q37.3) WILD-TYPE
  CLUS_1                          84                           120
  CLUS_2                         144                           465
  CLUS_3                          27                            32

Clustering(32) Variable = Del Peak  4(3p14.3) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                          49                           207
  CLUS_2                          27                            65
  CLUS_3                          88                            71
D32V2, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                          67                            54
  CLUS_2                          66                           186
  CLUS_3                          31                           103
D32V3, multiclass
D32V4, multiclass
D32V5, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                          79                            67
  CLUS_2                          25                           104
  CLUS_3                          32                            83
D32V6, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                          40                           116
  CLUS_2                          31                            77
  CLUS_3                          65                            61
D32V7, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                         125                           110
  CLUS_2                          28                           127
  CLUS_3                         105                           329
D32V8, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                         103                           310
  CLUS_2                          54                           162
  CLUS_3                         101                            94
D32V9, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                          44                           156
  CLUS_2                          88                           335
  CLUS_3                         135                           114
D32V10, multiclass
        clus
vv       DEL PEAK  4(3P14.3) MUTATED DEL PEAK  4(3P14.3) WILD-TYPE
  CLUS_1                         105                            99
  CLUS_2                         137                           472
  CLUS_3                          25                            34

Clustering(33) Variable = Del Peak  5(4p16.3) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          53                           203
  CLUS_2                          31                            61
  CLUS_3                          84                            75
D33V2, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          72                            49
  CLUS_2                          72                           180
  CLUS_3                          24                           110
D33V3, multiclass
D33V4, multiclass
D33V5, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          75                            71
  CLUS_2                          39                            90
  CLUS_3                          24                            91
D33V6, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          48                           108
  CLUS_2                          24                            84
  CLUS_3                          66                            60
D33V7, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         133                           102
  CLUS_2                          22                           133
  CLUS_3                         104                           330
D33V8, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         110                           303
  CLUS_2                          38                           178
  CLUS_3                         111                            84
D33V9, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                          40                           160
  CLUS_2                         103                           320
  CLUS_3                         127                           122
D33V10, multiclass
        clus
vv       DEL PEAK  5(4P16.3) MUTATED DEL PEAK  5(4P16.3) WILD-TYPE
  CLUS_1                         108                            96
  CLUS_2                         138                           471
  CLUS_3                          24                            35

Clustering(34) Variable = Del Peak  6(4q35.2) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          55                           201
  CLUS_2                          26                            66
  CLUS_3                          83                            76
D34V2, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          63                            58
  CLUS_2                          74                           178
  CLUS_3                          27                           107
D34V3, multiclass
D34V4, multiclass
D34V5, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          77                            69
  CLUS_2                          34                            95
  CLUS_3                          24                            91
D34V6, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          44                           112
  CLUS_2                          25                            83
  CLUS_3                          66                            60
D34V7, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                         131                           104
  CLUS_2                          22                           133
  CLUS_3                         105                           329
D34V8, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                         108                           305
  CLUS_2                          42                           174
  CLUS_3                         108                            87
D34V9, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          38                           162
  CLUS_2                         102                           321
  CLUS_3                         128                           121
D34V10, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                         111                            93
  CLUS_2                         133                           476
  CLUS_3                          24                            35

Clustering(35) Variable = Del Peak  7(5q11.2) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          26                           230
  CLUS_2                          22                            70
  CLUS_3                          86                            73
D35V2, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          79                            42
  CLUS_2                          41                           211
  CLUS_3                          14                           120
D35V3, multiclass
D35V4, multiclass
D35V5, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          77                            69
  CLUS_2                          13                           116
  CLUS_3                          23                            92
D35V6, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          25                           131
  CLUS_2                          13                            95
  CLUS_3                          75                            51
D35V7, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                         141                            94
  CLUS_2                          11                           144
  CLUS_3                          66                           368
D35V8, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          65                           348
  CLUS_2                          23                           193
  CLUS_3                         130                            65
D35V9, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                          28                           172
  CLUS_2                          48                           375
  CLUS_3                         144                           105
D35V10, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) MUTATED DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                         134                            70
  CLUS_2                          69                           540
  CLUS_3                          17                            42

Clustering(36) Variable = Del Peak  8(5q21.3) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          23                           233
  CLUS_2                          22                            70
  CLUS_3                          89                            70
D36V2, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          80                            41
  CLUS_2                          42                           210
  CLUS_3                          12                           122
D36V3, multiclass
D36V4, multiclass
D36V5, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          76                            70
  CLUS_2                          13                           116
  CLUS_3                          23                            92
D36V6, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          26                           130
  CLUS_2                          15                            93
  CLUS_3                          71                            55
D36V7, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         144                            91
  CLUS_2                           8                           147
  CLUS_3                          57                           377
D36V8, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          55                           358
  CLUS_2                          22                           194
  CLUS_3                         132                            63
D36V9, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                          27                           173
  CLUS_2                          46                           377
  CLUS_3                         141                           108
D36V10, multiclass
        clus
vv       DEL PEAK  8(5Q21.3) MUTATED DEL PEAK  8(5Q21.3) WILD-TYPE
  CLUS_1                         136                            68
  CLUS_2                          63                           546
  CLUS_3                          15                            44

Clustering(37) Variable = Del Peak  9(6p25.3) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          49                           207
  CLUS_2                          16                            76
  CLUS_3                          28                           131
D37V2, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          21                           100
  CLUS_2                          51                           201
  CLUS_3                          21                           113
D37V3, multiclass
D37V4, multiclass
D37V5, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          33                           113
  CLUS_2                          24                           105
  CLUS_3                          19                            96
D37V6, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          34                           122
  CLUS_2                          18                            90
  CLUS_3                          24                           102
D37V7, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          42                           193
  CLUS_2                          15                           140
  CLUS_3                          95                           339
D37V8, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          87                           326
  CLUS_2                          29                           187
  CLUS_3                          36                           159
D37V9, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          26                           174
  CLUS_2                          85                           338
  CLUS_3                          54                           195
D37V10, multiclass
        clus
vv       DEL PEAK  9(6P25.3) MUTATED DEL PEAK  9(6P25.3) WILD-TYPE
  CLUS_1                          41                           163
  CLUS_2                         107                           502
  CLUS_3                          17                            42

Clustering(38) Variable = Del Peak 10(6q15) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        95                         161
  CLUS_2                        31                          61
  CLUS_3                        42                         117
D38V2, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        25                          96
  CLUS_2                       100                         152
  CLUS_3                        43                          91
D38V3, multiclass
D38V4, multiclass
D38V5, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        43                         103
  CLUS_2                        48                          81
  CLUS_3                        39                          76
D38V6, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        59                          97
  CLUS_2                        38                          70
  CLUS_3                        33                          93
D38V7, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        55                         180
  CLUS_2                        46                         109
  CLUS_3                       176                         258
D38V8, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                       166                         247
  CLUS_2                        66                         150
  CLUS_3                        45                         150
D38V9, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        55                         145
  CLUS_2                       156                         267
  CLUS_3                        78                         171
D38V10, multiclass
        clus
vv       DEL PEAK 10(6Q15) MUTATED DEL PEAK 10(6Q15) WILD-TYPE
  CLUS_1                        47                         157
  CLUS_2                       222                         387
  CLUS_3                        20                          39

Clustering(39) Variable = Del Peak 11(6q27) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        83                         173
  CLUS_2                        30                          62
  CLUS_3                        66                          93
D39V2, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        41                          80
  CLUS_2                        96                         156
  CLUS_3                        42                          92
D39V3, multiclass
D39V4, multiclass
D39V5, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        63                          83
  CLUS_2                        42                          87
  CLUS_3                        34                          81
D39V6, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        58                          98
  CLUS_2                        34                          74
  CLUS_3                        47                          79
D39V7, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        84                         151
  CLUS_2                        47                         108
  CLUS_3                       153                         281
D39V8, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                       149                         264
  CLUS_2                        68                         148
  CLUS_3                        67                         128
D39V9, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        62                         138
  CLUS_2                       139                         284
  CLUS_3                        97                         152
D39V10, multiclass
        clus
vv       DEL PEAK 11(6Q27) MUTATED DEL PEAK 11(6Q27) WILD-TYPE
  CLUS_1                        72                         132
  CLUS_2                       203                         406
  CLUS_3                        23                          36

Clustering(40) Variable = Del Peak 12(7p22.3) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          30                           226
  CLUS_2                           6                            86
  CLUS_3                          38                           121
D40V2, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          27                            94
  CLUS_2                          39                           213
  CLUS_3                           8                           126
D40V3, multiclass
D40V4, multiclass
D40V5, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          29                           117
  CLUS_2                          14                           115
  CLUS_3                          10                           105
D40V6, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          18                           138
  CLUS_2                           8                           100
  CLUS_3                          27                            99
D40V7, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          54                           181
  CLUS_2                           4                           151
  CLUS_3                          56                           378
D40V8, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          59                           354
  CLUS_2                          12                           204
  CLUS_3                          43                           152
D40V9, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                           9                           191
  CLUS_2                          43                           380
  CLUS_3                          61                           188
D40V10, multiclass
        clus
vv       DEL PEAK 12(7P22.3) MUTATED DEL PEAK 12(7P22.3) WILD-TYPE
  CLUS_1                          51                           153
  CLUS_2                          50                           559
  CLUS_3                          12                            47

Clustering(41) Variable = Del Peak 13(7q36.1) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          43                           213
  CLUS_2                          11                            81
  CLUS_3                          48                           111
D41V2, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          28                            93
  CLUS_2                          59                           193
  CLUS_3                          15                           119
D41V3, multiclass
D41V4, multiclass
D41V5, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          31                           115
  CLUS_2                          23                           106
  CLUS_3                          19                            96
D41V6, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          24                           132
  CLUS_2                          17                            91
  CLUS_3                          32                            94
D41V7, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          65                           170
  CLUS_2                          19                           136
  CLUS_3                          85                           349
D41V8, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          91                           322
  CLUS_2                          32                           184
  CLUS_3                          46                           149
D41V9, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          22                           178
  CLUS_2                          65                           358
  CLUS_3                          80                           169
D41V10, multiclass
        clus
vv       DEL PEAK 13(7Q36.1) MUTATED DEL PEAK 13(7Q36.1) WILD-TYPE
  CLUS_1                          55                           149
  CLUS_2                          90                           519
  CLUS_3                          22                            37

Clustering(42) Variable = Del Peak 14(8p23.2) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         122                           134
  CLUS_2                          42                            50
  CLUS_3                         109                            50
D42V2, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          85                            36
  CLUS_2                         136                           116
  CLUS_3                          52                            82
D42V3, multiclass
D42V4, multiclass
D42V5, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          94                            52
  CLUS_2                          60                            69
  CLUS_3                          66                            49
D42V6, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          79                            77
  CLUS_2                          58                            50
  CLUS_3                          83                            43
D42V7, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         160                            75
  CLUS_2                          50                           105
  CLUS_3                         230                           204
D42V8, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         218                           195
  CLUS_2                          91                           125
  CLUS_3                         131                            64
D42V9, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                          86                           114
  CLUS_2                         203                           220
  CLUS_3                         168                            81
D42V10, multiclass
        clus
vv       DEL PEAK 14(8P23.2) MUTATED DEL PEAK 14(8P23.2) WILD-TYPE
  CLUS_1                         143                            61
  CLUS_2                         277                           332
  CLUS_3                          37                            22

Clustering(43) Variable = Del Peak 15(8p11.21) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           34                            222
  CLUS_2                           18                             74
  CLUS_3                           48                            111
D43V2, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           34                             87
  CLUS_2                           51                            201
  CLUS_3                           15                            119
D43V3, multiclass
D43V4, multiclass
D43V5, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           40                            106
  CLUS_2                           19                            110
  CLUS_3                           24                             91
D43V6, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           24                            132
  CLUS_2                           22                             86
  CLUS_3                           37                             89
D43V7, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           63                            172
  CLUS_2                           19                            136
  CLUS_3                           77                            357
D43V8, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           73                            340
  CLUS_2                           36                            180
  CLUS_3                           50                            145
D43V9, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           30                            170
  CLUS_2                           76                            347
  CLUS_3                           62                            187
D43V10, multiclass
        clus
vv       DEL PEAK 15(8P11.21) MUTATED DEL PEAK 15(8P11.21) WILD-TYPE
  CLUS_1                           57                            147
  CLUS_2                           91                            518
  CLUS_3                           20                             39

Clustering(44) Variable = Del Peak 16(9p21.3) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          86                           170
  CLUS_2                          19                            73
  CLUS_3                          79                            80
D44V2, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          43                            78
  CLUS_2                         114                           138
  CLUS_3                          27                           107
D44V3, multiclass
D44V4, multiclass
D44V5, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          70                            76
  CLUS_2                          40                            89
  CLUS_3                          35                            80
D44V6, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          60                            96
  CLUS_2                          34                            74
  CLUS_3                          51                            75
D44V7, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          94                           141
  CLUS_2                          25                           130
  CLUS_3                         167                           267
D44V8, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                         159                           254
  CLUS_2                          54                           162
  CLUS_3                          73                           122
D44V9, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          35                           165
  CLUS_2                         140                           283
  CLUS_3                         114                           135
D44V10, multiclass
        clus
vv       DEL PEAK 16(9P21.3) MUTATED DEL PEAK 16(9P21.3) WILD-TYPE
  CLUS_1                          86                           118
  CLUS_2                         174                           435
  CLUS_3                          29                            30

Clustering(45) Variable = Del Peak 17(9q21.11) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           68                            188
  CLUS_2                           18                             74
  CLUS_3                           64                             95
D45V2, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           47                             74
  CLUS_2                           83                            169
  CLUS_3                           20                            114
D45V3, multiclass
D45V4, multiclass
D45V5, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           64                             82
  CLUS_2                           32                             97
  CLUS_3                           21                             94
D45V6, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           45                            111
  CLUS_2                           22                             86
  CLUS_3                           50                             76
D45V7, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           85                            150
  CLUS_2                           21                            134
  CLUS_3                          122                            312
D45V8, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                          117                            296
  CLUS_2                           39                            177
  CLUS_3                           72                            123
D45V9, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           31                            169
  CLUS_2                          101                            322
  CLUS_3                          100                            149
D45V10, multiclass
        clus
vv       DEL PEAK 17(9Q21.11) MUTATED DEL PEAK 17(9Q21.11) WILD-TYPE
  CLUS_1                           88                            116
  CLUS_2                          124                            485
  CLUS_3                           20                             39

Clustering(46) Variable = Del Peak 18(10q23.31) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            51                             205
  CLUS_2                            23                              69
  CLUS_3                            71                              88
D46V2, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            53                              68
  CLUS_2                            65                             187
  CLUS_3                            27                             107
D46V3, multiclass
D46V4, multiclass
D46V5, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            67                              79
  CLUS_2                            30                              99
  CLUS_3                            17                              98
D46V6, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            45                             111
  CLUS_2                            16                              92
  CLUS_3                            53                              73
D46V7, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                           109                             126
  CLUS_2                            21                             134
  CLUS_3                           114                             320
D46V8, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                           111                             302
  CLUS_2                            44                             172
  CLUS_3                            89                             106
D46V9, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            41                             159
  CLUS_2                            99                             324
  CLUS_3                           109                             140
D46V10, multiclass
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  CLUS_1                            94                             110
  CLUS_2                           139                             470
  CLUS_3                            16                              43

Clustering(47) Variable = Del Peak 19(10q26.3) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           49                            207
  CLUS_2                           23                             69
  CLUS_3                           77                             82
D47V2, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           58                             63
  CLUS_2                           68                            184
  CLUS_3                           23                            111
D47V3, multiclass
D47V4, multiclass
D47V5, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           71                             75
  CLUS_2                           26                            103
  CLUS_3                           22                             93
D47V6, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           43                            113
  CLUS_2                           16                             92
  CLUS_3                           60                             66
D47V7, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                          114                            121
  CLUS_2                           18                            137
  CLUS_3                          112                            322
D47V8, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                          112                            301
  CLUS_2                           39                            177
  CLUS_3                           93                            102
D47V9, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           39                            161
  CLUS_2                           91                            332
  CLUS_3                          118                            131
D47V10, multiclass
        clus
vv       DEL PEAK 19(10Q26.3) MUTATED DEL PEAK 19(10Q26.3) WILD-TYPE
  CLUS_1                           96                            108
  CLUS_2                          128                            481
  CLUS_3                           24                             35

Clustering(48) Variable = Del Peak 20(11p15.5) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           47                            209
  CLUS_2                           24                             68
  CLUS_3                           80                             79
D48V2, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           62                             59
  CLUS_2                           60                            192
  CLUS_3                           29                            105
D48V3, multiclass
D48V4, multiclass
D48V5, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           76                             70
  CLUS_2                           26                            103
  CLUS_3                           25                             90
D48V6, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           38                            118
  CLUS_2                           26                             82
  CLUS_3                           63                             63
D48V7, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                          119                            116
  CLUS_2                           22                            133
  CLUS_3                          102                            332
D48V8, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           97                            316
  CLUS_2                           47                            169
  CLUS_3                           99                             96
D48V9, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                           38                            162
  CLUS_2                           88                            335
  CLUS_3                          125                            124
D48V10, multiclass
        clus
vv       DEL PEAK 20(11P15.5) MUTATED DEL PEAK 20(11P15.5) WILD-TYPE
  CLUS_1                          106                             98
  CLUS_2                          123                            486
  CLUS_3                           22                             37

Clustering(49) Variable = Del Peak 21(11q23.2) mutation analysis
D49V1, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                          147                            109
  CLUS_2                           36                             56
  CLUS_3                           78                             81
D49V2, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                           53                             68
  CLUS_2                          141                            111
  CLUS_3                           67                             67
D49V3, multiclass
D49V4, multiclass
D49V5, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                           76                             70
  CLUS_2                           65                             64
  CLUS_3                           57                             58
D49V6, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                           84                             72
  CLUS_2                           55                             53
  CLUS_3                           59                             67
D49V7, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                          103                            132
  CLUS_2                           67                             88
  CLUS_3                          244                            190
D49V8, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                          220                            193
  CLUS_2                          117                             99
  CLUS_3                           77                            118
D49V9, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                           81                            119
  CLUS_2                          226                            197
  CLUS_3                          121                            128
D49V10, multiclass
        clus
vv       DEL PEAK 21(11Q23.2) MUTATED DEL PEAK 21(11Q23.2) WILD-TYPE
  CLUS_1                           82                            122
  CLUS_2                          309                            300
  CLUS_3                           37                             22

Clustering(50) Variable = Del Peak 22(12p13.1) mutation analysis
D50V1, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           39                            217
  CLUS_2                           14                             78
  CLUS_3                           40                            119
D50V2, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           30                             91
  CLUS_2                           45                            207
  CLUS_3                           18                            116
D50V3, multiclass
D50V4, multiclass
D50V5, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           33                            113
  CLUS_2                           22                            107
  CLUS_3                           17                             98
D50V6, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           25                            131
  CLUS_2                           15                             93
  CLUS_3                           32                             94
D50V7, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           61                            174
  CLUS_2                           22                            133
  CLUS_3                           66                            368
D50V8, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           66                            347
  CLUS_2                           34                            182
  CLUS_3                           49                            146
D50V9, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           30                            170
  CLUS_2                           60                            363
  CLUS_3                           63                            186
D50V10, multiclass
        clus
vv       DEL PEAK 22(12P13.1) MUTATED DEL PEAK 22(12P13.1) WILD-TYPE
  CLUS_1                           50                            154
  CLUS_2                           85                            524
  CLUS_3                           18                             41

Clustering(51) Variable = Del Peak 23(12q24.31) mutation analysis
D51V1, multiclass
        clus
vv       DEL PEAK 23(12Q24.31) MUTATED DEL PEAK 23(12Q24.31) WILD-TYPE
  CLUS_1                            21                             235
  CLUS_2                            22                              70
  CLUS_3                            54                             105
D51V2, multiclass
        clus
vv       DEL PEAK 23(12Q24.31) MUTATED DEL PEAK 23(12Q24.31) WILD-TYPE
  CLUS_1                            50                              71
  CLUS_2                            34                             218
  CLUS_3                            13                             121
D51V3, multiclass
D51V4, multiclass
D51V5, multiclass
        clus
vv       DEL PEAK 23(12Q24.31) MUTATED DEL PEAK 23(12Q24.31) WILD-TYPE
  CLUS_1                            46                             100
  CLUS_2                            12                             117
  CLUS_3                            19                              96
D51V6, multiclass
        clus
vv       DEL PEAK 23(12Q24.31) MUTATED DEL PEAK 23(12Q24.31) WILD-TYPE
  CLUS_1                            20                             136
  CLUS_2                            12                              96
  CLUS_3                            45                              81
D51V7, multiclass
        clus
vv       DEL PEAK 23(12Q24.31) MUTATED DEL PEAK 23(12Q24.31) WILD-TYPE
  CLUS_1                            85                             150
  CLUS_2                            17                             138
  CLUS_3                            41                             393
D51V8, multiclass
        clus
vv       DEL PEAK 23(12Q24.31) MUTATED DEL PEAK 23(12Q24.31) WILD-TYPE
  CLUS_1                            39                             374
  CLUS_2                            29                             187
  CLUS_3                            75                             120
D51V9, multiclass
        clus
vv       DEL PEAK 23(12Q24.31) MUTATED DEL PEAK 23(12Q24.31) WILD-TYPE
  CLUS_1                            29                             171
  CLUS_2                            45                             378
  CLUS_3                            83                             166
D51V10, multiclass
        clus
vv       DEL PEAK 23(12Q24.31) MUTATED DEL PEAK 23(12Q24.31) WILD-TYPE
  CLUS_1                            69                             135
  CLUS_2                            71                             538
  CLUS_3                            17                              42

Clustering(52) Variable = Del Peak 24(13q14.2) mutation analysis
D52V1, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                          117                            139
  CLUS_2                           33                             59
  CLUS_3                           88                             71
D52V2, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           74                             47
  CLUS_2                          120                            132
  CLUS_3                           44                             90
D52V3, multiclass
D52V4, multiclass
D52V5, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           73                             73
  CLUS_2                           56                             73
  CLUS_3                           54                             61
D52V6, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           68                             88
  CLUS_2                           46                             62
  CLUS_3                           69                             57
D52V7, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                          134                            101
  CLUS_2                           44                            111
  CLUS_3                          205                            229
D52V8, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                          193                            220
  CLUS_2                           77                            139
  CLUS_3                          113                             82
D52V9, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                           61                            139
  CLUS_2                          189                            234
  CLUS_3                          146                            103
D52V10, multiclass
        clus
vv       DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE
  CLUS_1                          114                             90
  CLUS_2                          246                            363
  CLUS_3                           36                             23

Clustering(53) Variable = Del Peak 25(14q24.3) mutation analysis
D53V1, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           60                            196
  CLUS_2                           28                             64
  CLUS_3                           79                             80
D53V2, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           69                             52
  CLUS_2                           69                            183
  CLUS_3                           29                            105
D53V3, multiclass
D53V4, multiclass
D53V5, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           74                             72
  CLUS_2                           28                            101
  CLUS_3                           29                             86
D53V6, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           44                            112
  CLUS_2                           23                             85
  CLUS_3                           64                             62
D53V7, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                          122                            113
  CLUS_2                           25                            130
  CLUS_3                          121                            313
D53V8, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                          114                            299
  CLUS_2                           48                            168
  CLUS_3                          106                             89
D53V9, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                           46                            154
  CLUS_2                           95                            328
  CLUS_3                          135                            114
D53V10, multiclass
        clus
vv       DEL PEAK 25(14Q24.3) MUTATED DEL PEAK 25(14Q24.3) WILD-TYPE
  CLUS_1                          119                             85
  CLUS_2                          134                            475
  CLUS_3                           23                             36

Clustering(54) Variable = Del Peak 26(15q13.1) mutation analysis
D54V1, multiclass
        clus
vv       DEL PEAK 26(15Q13.1) MUTATED DEL PEAK 26(15Q13.1) WILD-TYPE
  CLUS_1                           75                            181
  CLUS_2                           28                             64
  CLUS_3                           85                             74
D54V2, multiclass
        clus
vv       DEL PEAK 26(15Q13.1) MUTATED DEL PEAK 26(15Q13.1) WILD-TYPE
  CLUS_1                           68                             53
  CLUS_2                           92                            160
  CLUS_3                           28                            106
D54V3, multiclass
D54V4, multiclass
D54V5, multiclass
        clus
vv       DEL PEAK 26(15Q13.1) MUTATED DEL PEAK 26(15Q13.1) WILD-TYPE
  CLUS_1                           76                             70
  CLUS_2                           39                             90
  CLUS_3                           38                             77
D54V6, multiclass
        clus
vv       DEL PEAK 26(15Q13.1) MUTATED DEL PEAK 26(15Q13.1) WILD-TYPE
  CLUS_1                           54                            102
  CLUS_2                           30                             78
  CLUS_3                           69                             57
D54V7, multiclass
        clus
vv       DEL PEAK 26(15Q13.1) MUTATED DEL PEAK 26(15Q13.1) WILD-TYPE
  CLUS_1                          127                            108
  CLUS_2                           24                            131
  CLUS_3                          138                            296
D54V8, multiclass
        clus
vv       DEL PEAK 26(15Q13.1) MUTATED DEL PEAK 26(15Q13.1) WILD-TYPE
  CLUS_1                          126                            287
  CLUS_2                           52                            164
  CLUS_3                          111                             84
D54V9, multiclass
        clus
vv       DEL PEAK 26(15Q13.1) MUTATED DEL PEAK 26(15Q13.1) WILD-TYPE
  CLUS_1                           40                            160
  CLUS_2                          124                            299
  CLUS_3                          137                            112
D54V10, multiclass
        clus
vv       DEL PEAK 26(15Q13.1) MUTATED DEL PEAK 26(15Q13.1) WILD-TYPE
  CLUS_1                          119                             85
  CLUS_2                          147                            462
  CLUS_3                           35                             24

Clustering(55) Variable = Del Peak 27(16q24.3) mutation analysis
D55V1, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                          204                             52
  CLUS_2                           57                             35
  CLUS_3                           71                             88
D55V2, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           45                             76
  CLUS_2                          181                             71
  CLUS_3                          106                             28
D55V3, multiclass
D55V4, multiclass
D55V5, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           63                             83
  CLUS_2                          100                             29
  CLUS_3                           83                             32
D55V6, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                          116                             40
  CLUS_2                           82                             26
  CLUS_3                           48                             78
D55V7, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           97                            138
  CLUS_2                          123                             32
  CLUS_3                          314                            120
D55V8, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                          301                            112
  CLUS_2                          159                             57
  CLUS_3                           74                            121
D55V9, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                          134                             66
  CLUS_2                          317                            106
  CLUS_3                          112                            137
D55V10, multiclass
        clus
vv       DEL PEAK 27(16Q24.3) MUTATED DEL PEAK 27(16Q24.3) WILD-TYPE
  CLUS_1                           78                            126
  CLUS_2                          454                            155
  CLUS_3                           31                             28

Clustering(56) Variable = Del Peak 28(17p12) mutation analysis
D56V1, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                        133                          123
  CLUS_2                         55                           37
  CLUS_3                        121                           38
D56V2, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                         85                           36
  CLUS_2                        146                          106
  CLUS_3                         78                           56
D56V3, multiclass
D56V4, multiclass
D56V5, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                        108                           38
  CLUS_2                         65                           64
  CLUS_3                         64                           51
D56V6, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                         90                           66
  CLUS_2                         57                           51
  CLUS_3                         90                           36
D56V7, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                        164                           71
  CLUS_2                         87                           68
  CLUS_3                        249                          185
D56V8, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                        236                          177
  CLUS_2                        136                           80
  CLUS_3                        128                           67
D56V9, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                        110                           90
  CLUS_2                        234                          189
  CLUS_3                        184                           65
D56V10, multiclass
        clus
vv       DEL PEAK 28(17P12) MUTATED DEL PEAK 28(17P12) WILD-TYPE
  CLUS_1                        141                           63
  CLUS_2                        338                          271
  CLUS_3                         49                           10

Clustering(57) Variable = Del Peak 29(17q21.31) mutation analysis
D57V1, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            60                             196
  CLUS_2                            36                              56
  CLUS_3                            94                              65
D57V2, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            71                              50
  CLUS_2                            78                             174
  CLUS_3                            41                              93
D57V3, multiclass
D57V4, multiclass
D57V5, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            87                              59
  CLUS_2                            24                             105
  CLUS_3                            44                              71
D57V6, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            41                             115
  CLUS_2                            33                              75
  CLUS_3                            81                              45
D57V7, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                           144                              91
  CLUS_2                            41                             114
  CLUS_3                           109                             325
D57V8, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                           100                             313
  CLUS_2                            79                             137
  CLUS_3                           115                              80
D57V9, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                            59                             141
  CLUS_2                           108                             315
  CLUS_3                           138                             111
D57V10, multiclass
        clus
vv       DEL PEAK 29(17Q21.31) MUTATED DEL PEAK 29(17Q21.31) WILD-TYPE
  CLUS_1                           112                              92
  CLUS_2                           158                             451
  CLUS_3                            35                              24

Clustering(58) Variable = Del Peak 30(18q23) mutation analysis
D58V1, multiclass
        clus
vv       DEL PEAK 30(18Q23) MUTATED DEL PEAK 30(18Q23) WILD-TYPE
  CLUS_1                         67                          189
  CLUS_2                         22                           70
  CLUS_3                         76                           83
D58V2, multiclass
        clus
vv       DEL PEAK 30(18Q23) MUTATED DEL PEAK 30(18Q23) WILD-TYPE
  CLUS_1                         47                           74
  CLUS_2                         86                          166
  CLUS_3                         32                          102
D58V3, multiclass
D58V4, multiclass
D58V5, multiclass
        clus
vv       DEL PEAK 30(18Q23) MUTATED DEL PEAK 30(18Q23) WILD-TYPE
  CLUS_1                         62                           84
  CLUS_2                         35                           94
  CLUS_3                         30                           85
D58V6, multiclass
        clus
vv       DEL PEAK 30(18Q23) MUTATED DEL PEAK 30(18Q23) WILD-TYPE
  CLUS_1                         53                          103
  CLUS_2                         31                           77
  CLUS_3                         43                           83
D58V7, multiclass
        clus
vv       DEL PEAK 30(18Q23) MUTATED DEL PEAK 30(18Q23) WILD-TYPE
  CLUS_1                        102                          133
  CLUS_2                         34                          121
  CLUS_3                        134                          300
D58V8, multiclass
        clus
vv       DEL PEAK 30(18Q23) MUTATED DEL PEAK 30(18Q23) WILD-TYPE
  CLUS_1                        130                          283
  CLUS_2                         62                          154
  CLUS_3                         78                          117
D58V9, multiclass
        clus
vv       DEL PEAK 30(18Q23) MUTATED DEL PEAK 30(18Q23) WILD-TYPE
  CLUS_1                         48                          152
  CLUS_2                        131                          292
  CLUS_3                        108                          141
D58V10, multiclass
        clus
vv       DEL PEAK 30(18Q23) MUTATED DEL PEAK 30(18Q23) WILD-TYPE
  CLUS_1                         86                          118
  CLUS_2                        174                          435
  CLUS_3                         27                           32

Clustering(59) Variable = Del Peak 31(19p13.3) mutation analysis
D59V1, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           69                            187
  CLUS_2                           24                             68
  CLUS_3                           90                             69
D59V2, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           65                             56
  CLUS_2                           94                            158
  CLUS_3                           24                            110
D59V3, multiclass
D59V4, multiclass
D59V5, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           79                             67
  CLUS_2                           38                             91
  CLUS_3                           31                             84
D59V6, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           49                            107
  CLUS_2                           31                             77
  CLUS_3                           68                             58
D59V7, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                          120                            115
  CLUS_2                           23                            132
  CLUS_3                          143                            291
D59V8, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                          139                            274
  CLUS_2                           47                            169
  CLUS_3                          100                             95
D59V9, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                           40                            160
  CLUS_2                          117                            306
  CLUS_3                          135                            114
D59V10, multiclass
        clus
vv       DEL PEAK 31(19P13.3) MUTATED DEL PEAK 31(19P13.3) WILD-TYPE
  CLUS_1                          113                             91
  CLUS_2                          154                            455
  CLUS_3                           25                             34

Clustering(60) Variable = Del Peak 32(19q13.32) mutation analysis
D60V1, multiclass
        clus
vv       DEL PEAK 32(19Q13.32) MUTATED DEL PEAK 32(19Q13.32) WILD-TYPE
  CLUS_1                            34                             222
  CLUS_2                            12                              80
  CLUS_3                            49                             110
D60V2, multiclass
        clus
vv       DEL PEAK 32(19Q13.32) MUTATED DEL PEAK 32(19Q13.32) WILD-TYPE
  CLUS_1                            35                              86
  CLUS_2                            51                             201
  CLUS_3                             9                             125
D60V3, multiclass
D60V4, multiclass
D60V5, multiclass
        clus
vv       DEL PEAK 32(19Q13.32) MUTATED DEL PEAK 32(19Q13.32) WILD-TYPE
  CLUS_1                            44                             102
  CLUS_2                            18                             111
  CLUS_3                            15                             100
D60V6, multiclass
        clus
vv       DEL PEAK 32(19Q13.32) MUTATED DEL PEAK 32(19Q13.32) WILD-TYPE
  CLUS_1                            25                             131
  CLUS_2                            11                              97
  CLUS_3                            41                              85
D60V7, multiclass
        clus
vv       DEL PEAK 32(19Q13.32) MUTATED DEL PEAK 32(19Q13.32) WILD-TYPE
  CLUS_1                            77                             158
  CLUS_2                            12                             143
  CLUS_3                            83                             351
D60V8, multiclass
        clus
vv       DEL PEAK 32(19Q13.32) MUTATED DEL PEAK 32(19Q13.32) WILD-TYPE
  CLUS_1                            86                             327
  CLUS_2                            24                             192
  CLUS_3                            62                             133
D60V9, multiclass
        clus
vv       DEL PEAK 32(19Q13.32) MUTATED DEL PEAK 32(19Q13.32) WILD-TYPE
  CLUS_1                            21                             179
  CLUS_2                            66                             357
  CLUS_3                            85                             164
D60V10, multiclass
        clus
vv       DEL PEAK 32(19Q13.32) MUTATED DEL PEAK 32(19Q13.32) WILD-TYPE
  CLUS_1                            59                             145
  CLUS_2                            89                             520
  CLUS_3                            24                              35

Clustering(61) Variable = Del Peak 33(20p13) mutation analysis
D61V1, multiclass
        clus
vv       DEL PEAK 33(20P13) MUTATED DEL PEAK 33(20P13) WILD-TYPE
  CLUS_1                         28                          228
  CLUS_2                         12                           80
  CLUS_3                         38                          121
D61V2, multiclass
        clus
vv       DEL PEAK 33(20P13) MUTATED DEL PEAK 33(20P13) WILD-TYPE
  CLUS_1                         33                           88
  CLUS_2                         37                          215
  CLUS_3                          8                          126
D61V3, multiclass
D61V4, multiclass
D61V5, multiclass
        clus
vv       DEL PEAK 33(20P13) MUTATED DEL PEAK 33(20P13) WILD-TYPE
  CLUS_1                         35                          111
  CLUS_2                         10                          119
  CLUS_3                         16                           99
D61V6, multiclass
        clus
vv       DEL PEAK 33(20P13) MUTATED DEL PEAK 33(20P13) WILD-TYPE
  CLUS_1                         21                          135
  CLUS_2                         10                           98
  CLUS_3                         30                           96
D61V7, multiclass
        clus
vv       DEL PEAK 33(20P13) MUTATED DEL PEAK 33(20P13) WILD-TYPE
  CLUS_1                         64                          171
  CLUS_2                          6                          149
  CLUS_3                         55                          379
D61V8, multiclass
        clus
vv       DEL PEAK 33(20P13) MUTATED DEL PEAK 33(20P13) WILD-TYPE
  CLUS_1                         54                          359
  CLUS_2                         16                          200
  CLUS_3                         55                          140
D61V9, multiclass
        clus
vv       DEL PEAK 33(20P13) MUTATED DEL PEAK 33(20P13) WILD-TYPE
  CLUS_1                         15                          185
  CLUS_2                         39                          384
  CLUS_3                         70                          179
D61V10, multiclass
        clus
vv       DEL PEAK 33(20P13) MUTATED DEL PEAK 33(20P13) WILD-TYPE
  CLUS_1                         57                          147
  CLUS_2                         57                          552
  CLUS_3                         10                           49

Clustering(62) Variable = Del Peak 34(21q11.2) mutation analysis
D62V1, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           48                            208
  CLUS_2                           11                             81
  CLUS_3                           47                            112
D62V2, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           23                             98
  CLUS_2                           63                            189
  CLUS_3                           20                            114
D62V3, multiclass
D62V4, multiclass
D62V5, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           38                            108
  CLUS_2                           27                            102
  CLUS_3                           21                             94
D62V6, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           39                            117
  CLUS_2                           21                             87
  CLUS_3                           26                            100
D62V7, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           50                            185
  CLUS_2                           19                            136
  CLUS_3                          101                            333
D62V8, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           95                            318
  CLUS_2                           38                            178
  CLUS_3                           37                            158
D62V9, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           29                            171
  CLUS_2                           84                            339
  CLUS_3                           63                            186
D62V10, multiclass
        clus
vv       DEL PEAK 34(21Q11.2) MUTATED DEL PEAK 34(21Q11.2) WILD-TYPE
  CLUS_1                           45                            159
  CLUS_2                          113                            496
  CLUS_3                           18                             41

Clustering(63) Variable = Del Peak 35(22q13.32) mutation analysis
D63V1, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                           129                             127
  CLUS_2                            40                              52
  CLUS_3                            62                              97
D63V2, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            46                              75
  CLUS_2                           125                             127
  CLUS_3                            60                              74
D63V3, multiclass
D63V4, multiclass
D63V5, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            65                              81
  CLUS_2                            72                              57
  CLUS_3                            51                              64
D63V6, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            87                              69
  CLUS_2                            52                              56
  CLUS_3                            49                              77
D63V7, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            90                             145
  CLUS_2                            60                              95
  CLUS_3                           220                             214
D63V8, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                           199                             214
  CLUS_2                           100                             116
  CLUS_3                            71                             124
D63V9, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            73                             127
  CLUS_2                           212                             211
  CLUS_3                           104                             145
D63V10, multiclass
        clus
vv       DEL PEAK 35(22Q13.32) MUTATED DEL PEAK 35(22Q13.32) WILD-TYPE
  CLUS_1                            80                             124
  CLUS_2                           284                             325
  CLUS_3                            25                              34
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
