
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/334122/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/CESC-TP/2662335/1.GDAC_mergedClustering.Finished/CESC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=CESC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=CESC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=122, in cluster file=114, common to both=114
[1]  48 114
[1] "Amp Peak  1(1q21.3) mutation analysis"
[1] 3
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           60                            54 
  AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE 
                           60                            54 
[1] "Amp Peak  2(2p24.3) mutation analysis"
[1] 3
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                           29                            85 
  AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE 
                           29                            85 
[1] "Amp Peak  3(3q26.2) mutation analysis"
[1] 3
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           89                            25 
  AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE 
                           89                            25 
[1] "Amp Peak  4(3q28) mutation analysis"
[1] 3
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                         88                          26 
  AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE 
                         88                          26 
[1] "Amp Peak  5(4q12) mutation analysis"
[1] 3
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         12                         102 
  AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE 
                         12                         102 
[1] "Amp Peak  6(5p15.33) mutation analysis"
[1] 3
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            50                             64 
  AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE 
                            50                             64 
[1] "Amp Peak  7(6q12) mutation analysis"
[1] 3
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         21                          93 
  AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE 
                         21                          93 
[1] "Amp Peak  8(7p11.2) mutation analysis"
[1] 3
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                           23                            91 
  AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE 
                           23                            91 
[1] "Amp Peak  9(8q24.21) mutation analysis"
[1] 3
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                            47                             67 
  AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE 
                            47                             67 
[1] "Amp Peak 10(9p24.1) mutation analysis"
[1] 3
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                           26                            88 
  AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE 
                           26                            88 
[1] "Amp Peak 11(11p13) mutation analysis"
[1] 3
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           8                          106 
  AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE 
                           8                          106 
[1] "Amp Peak 12(11q13.3) mutation analysis"
[1] 3
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                            16                             98 
  AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE 
                            16                             98 
[1] "Amp Peak 13(11q22.1) mutation analysis"
[1] 3
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                            24                             90 
  AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE 
                            24                             90 
[1] "Amp Peak 14(13q22.1) mutation analysis"
[1] 3
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                            24                             90 
  AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE 
                            24                             90 
[1] "Amp Peak 15(14q24.1) mutation analysis"
[1] 3
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                            23                             91 
  AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE 
                            23                             91 
[1] "Amp Peak 16(15q26.3) mutation analysis"
[1] 3
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            29                             85 
  AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE 
                            29                             85 
[1] "Amp Peak 17(16p13.13) mutation analysis"
[1] 3
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                             28                              86 
  AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE 
                             28                              86 
[1] "Amp Peak 18(17q12) mutation analysis"
[1] 3
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                          19                           95 
  AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE 
                          19                           95 
[1] "Amp Peak 19(17q25.1) mutation analysis"
[1] 3
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                            30                             84 
  AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE 
                            30                             84 
[1] "Amp Peak 20(19q13.31) mutation analysis"
[1] 3
  AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE 
                             38                              76 
  AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE 
                             38                              76 
[1] "Amp Peak 21(20q11.21) mutation analysis"
[1] 3
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             57                              57 
  AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE 
                             57                              57 
[1] "Amp Peak 22(Xq28) mutation analysis"
[1] 3
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                         34                          80 
  AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE 
                         34                          80 
[1] "Del Peak  1(1p36.22) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                            18                             96 
  DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE 
                            18                             96 
[1] "Del Peak  2(2q22.1) mutation analysis"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           21                            93 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                           21                            93 
[1] "Del Peak  3(2q37.1) mutation analysis"
[1] 3
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           46                            68 
  DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE 
                           46                            68 
[1] "Del Peak  4(3p11.2) mutation analysis"
[1] 3
  DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE 
                           47                            67 
  DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE 
                           47                            67 
[1] "Del Peak  5(4q22.1) mutation analysis"
[1] 3
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           34                            80 
  DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE 
                           34                            80 
[1] "Del Peak  6(4q35.2) mutation analysis"
[1] 3
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           42                            72 
  DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE 
                           42                            72 
[1] "Del Peak  7(5q15) mutation analysis"
[1] 3
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                         33                          81 
  DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE 
                         33                          81 
[1] "Del Peak  8(6p24.3) mutation analysis"
[1] 3
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                           18                            96 
  DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE 
                           18                            96 
[1] "Del Peak  9(6p12.1) mutation analysis"
[1] 3
  DEL PEAK  9(6P12.1) MUTATED DEL PEAK  9(6P12.1) WILD-TYPE 
                           19                            95 
  DEL PEAK  9(6P12.1) MUTATED DEL PEAK  9(6P12.1) WILD-TYPE 
                           19                            95 
[1] "Del Peak 10(6q26) mutation analysis"
[1] 3
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                         43                          71 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                         43                          71 
[1] "Del Peak 11(7q34) mutation analysis"
[1] 3
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                         26                          88 
  DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE 
                         26                          88 
[1] "Del Peak 12(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                             35                              79 
  DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE 
                             35                              79 
[1] "Del Peak 13(11q25) mutation analysis"
[1] 3
  DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE 
                          68                           46 
  DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE 
                          68                           46 
[1] "Del Peak 14(13q12.12) mutation analysis"
[1] 3
  DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE 
                             45                              69 
  DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE 
                             45                              69 
[1] "Del Peak 15(13q13.3) mutation analysis"
[1] 3
  DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE 
                            47                             67 
  DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE 
                            47                             67 
[1] "Del Peak 16(14q31.1) mutation analysis"
[1] 3
  DEL PEAK 16(14Q31.1) MUTATED DEL PEAK 16(14Q31.1) WILD-TYPE 
                            18                             96 
  DEL PEAK 16(14Q31.1) MUTATED DEL PEAK 16(14Q31.1) WILD-TYPE 
                            18                             96 
[1] "Del Peak 17(14q32.31) mutation analysis"
[1] 3
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                             21                              93 
  DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE 
                             21                              93 
[1] "Del Peak 18(16q11.2) mutation analysis"
[1] 3
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                            21                             93 
  DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE 
                            21                             93 
[1] "Del Peak 19(16q23.1) mutation analysis"
[1] 3
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                            24                             90 
  DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE 
                            24                             90 
[1] "Del Peak 20(17p12) mutation analysis"
[1] 3
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                          38                           76 
  DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE 
                          38                           76 
[1] "Del Peak 21(17q25.3) mutation analysis"
[1] 3
  DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE 
                            19                             95 
  DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE 
                            19                             95 
[1] "Del Peak 22(19p13.3) mutation analysis"
[1] 3
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                            34                             80 
  DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE 
                            34                             80 
[1] "Del Peak 23(20p12.1) mutation analysis"
[1] 3
  DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE 
                            13                            101 
  DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE 
                            13                            101 
[1] "Del Peak 24(21q21.1) mutation analysis"
[1] 3
  DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE 
                            24                             90 
  DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE 
                            24                             90 
[1] "Del Peak 25(Xp11.3) mutation analysis"
[1] 3
  DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE 
                           34                            80 
  DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE 
                           34                            80 
[1] "Del Peak 26(Xq21.33) mutation analysis"
[1] 3
  DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE 
                            27                             87 
  DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE 
                            27                             87 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 6 rows and 114 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 114 columns, 0 survival variables, and 6 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q21.3) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          24                            11
  CLUS_2                          13                            12
  CLUS_3                          23                            31
D1V2, multiclass
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          26                            15
  CLUS_2                          11                            14
  CLUS_3                          16                            11
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                           6                            14
  CLUS_2                          14                            10
  CLUS_3                          33                            16
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          19                            22
  CLUS_2                          20                            17
  CLUS_3                          21                            15
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) MUTATED AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                          18                            12
  CLUS_2                          27                            25
  CLUS_3                          15                            17

Clustering(2) Variable = Amp Peak  2(2p24.3) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                          13                            22
  CLUS_2                           6                            19
  CLUS_3                          10                            44
D2V2, multiclass
D2V3, multiclass
        clus
vv       AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                           7                            18
  CLUS_3                           9                            18
D2V4, multiclass
        clus
vv       AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                           6                            14
  CLUS_2                           8                            16
  CLUS_3                          10                            39
D2V5, multiclass
        clus
vv       AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                           7                            30
  CLUS_3                          14                            22
D2V6, multiclass
        clus
vv       AMP PEAK  2(2P24.3) MUTATED AMP PEAK  2(2P24.3) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                           6                            46
  CLUS_3                          12                            20

Clustering(3) Variable = Amp Peak  3(3q26.2) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          35                             0
  CLUS_2                          19                             6
  CLUS_3                          35                            19
D3V2, multiclass
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          35                             6
  CLUS_2                          17                             8
  CLUS_3                          20                             7
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          11                             9
  CLUS_2                          19                             5
  CLUS_3                          42                             7
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          31                            10
  CLUS_2                          30                             7
  CLUS_3                          28                             8
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.2) MUTATED AMP PEAK  3(3Q26.2) WILD-TYPE
  CLUS_1                          22                             8
  CLUS_2                          45                             7
  CLUS_3                          22                            10

Clustering(4) Variable = Amp Peak  4(3q28) mutation analysis
D4V1, multiclass
        clus
vv       AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  CLUS_1                        35                           0
  CLUS_2                        18                           7
  CLUS_3                        35                          19
D4V2, multiclass
D4V3, multiclass
        clus
vv       AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  CLUS_1                        35                           6
  CLUS_2                        16                           9
  CLUS_3                        20                           7
D4V4, multiclass
        clus
vv       AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  CLUS_1                        10                          10
  CLUS_2                        18                           6
  CLUS_3                        43                           6
D4V5, multiclass
        clus
vv       AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  CLUS_1                        31                          10
  CLUS_2                        30                           7
  CLUS_3                        27                           9
D4V6, multiclass
        clus
vv       AMP PEAK  4(3Q28) MUTATED AMP PEAK  4(3Q28) WILD-TYPE
  CLUS_1                        22                           8
  CLUS_2                        45                           7
  CLUS_3                        21                          11

Clustering(5) Variable = Amp Peak  5(4q12) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         4                          31
  CLUS_2                         2                          23
  CLUS_3                         6                          48
D5V2, multiclass
D5V3, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         3                          38
  CLUS_2                         3                          22
  CLUS_3                         5                          22
D5V4, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         1                          19
  CLUS_2                         6                          18
  CLUS_3                         4                          45
D5V5, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         2                          39
  CLUS_2                         4                          33
  CLUS_3                         6                          30
D5V6, multiclass
        clus
vv       AMP PEAK  5(4Q12) MUTATED AMP PEAK  5(4Q12) WILD-TYPE
  CLUS_1                         7                          23
  CLUS_2                         2                          50
  CLUS_3                         3                          29

Clustering(6) Variable = Amp Peak  6(5p15.33) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           16                             19
  CLUS_2                           20                              5
  CLUS_3                           14                             40
D6V2, multiclass
D6V3, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           20                             21
  CLUS_2                           14                             11
  CLUS_3                           11                             16
D6V4, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           11                              9
  CLUS_2                           10                             14
  CLUS_3                           24                             25
D6V5, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           19                             22
  CLUS_2                           13                             24
  CLUS_3                           18                             18
D6V6, multiclass
        clus
vv       AMP PEAK  6(5P15.33) MUTATED AMP PEAK  6(5P15.33) WILD-TYPE
  CLUS_1                           13                             17
  CLUS_2                           18                             34
  CLUS_3                           19                             13

Clustering(7) Variable = Amp Peak  7(6q12) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         8                          27
  CLUS_2                         5                          20
  CLUS_3                         8                          46
D7V2, multiclass
D7V3, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         5                          36
  CLUS_2                         6                          19
  CLUS_3                         8                          19
D7V4, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         2                          18
  CLUS_2                         9                          15
  CLUS_3                         8                          41
D7V5, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         6                          35
  CLUS_2                         5                          32
  CLUS_3                        10                          26
D7V6, multiclass
        clus
vv       AMP PEAK  7(6Q12) MUTATED AMP PEAK  7(6Q12) WILD-TYPE
  CLUS_1                         8                          22
  CLUS_2                         6                          46
  CLUS_3                         7                          25

Clustering(8) Variable = Amp Peak  8(7p11.2) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                           7                            28
  CLUS_2                           9                            16
  CLUS_3                           7                            47
D8V2, multiclass
D8V3, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          10                            31
  CLUS_2                           8                            17
  CLUS_3                           2                            25
D8V4, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                           5                            15
  CLUS_2                           5                            19
  CLUS_3                          10                            39
D8V5, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                          13                            28
  CLUS_2                           4                            33
  CLUS_3                           6                            30
D8V6, multiclass
        clus
vv       AMP PEAK  8(7P11.2) MUTATED AMP PEAK  8(7P11.2) WILD-TYPE
  CLUS_1                           3                            27
  CLUS_2                           9                            43
  CLUS_3                          11                            21

Clustering(9) Variable = Amp Peak  9(8q24.21) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           11                             24
  CLUS_2                           14                             11
  CLUS_3                           22                             32
D9V2, multiclass
D9V3, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           20                             21
  CLUS_2                           10                             15
  CLUS_3                           11                             16
D9V4, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                           10                             14
  CLUS_3                           23                             26
D9V5, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           19                             22
  CLUS_2                           10                             27
  CLUS_3                           18                             18
D9V6, multiclass
        clus
vv       AMP PEAK  9(8Q24.21) MUTATED AMP PEAK  9(8Q24.21) WILD-TYPE
  CLUS_1                           15                             15
  CLUS_2                           19                             33
  CLUS_3                           13                             19

Clustering(10) Variable = Amp Peak 10(9p24.1) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                           7                            28
  CLUS_2                           8                            17
  CLUS_3                          11                            43
D10V2, multiclass
D10V3, multiclass
        clus
vv       AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                          10                            31
  CLUS_2                           6                            19
  CLUS_3                           6                            21
D10V4, multiclass
        clus
vv       AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                           6                            14
  CLUS_2                           6                            18
  CLUS_3                          10                            39
D10V5, multiclass
        clus
vv       AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                          13                            28
  CLUS_2                           6                            31
  CLUS_3                           7                            29
D10V6, multiclass
        clus
vv       AMP PEAK 10(9P24.1) MUTATED AMP PEAK 10(9P24.1) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                          13                            39
  CLUS_3                           8                            24

Clustering(11) Variable = Amp Peak 11(11p13) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                          2                           33
  CLUS_2                          3                           22
  CLUS_3                          3                           51
D11V2, multiclass
D11V3, multiclass
        clus
vv       AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                          2                           39
  CLUS_2                          4                           21
  CLUS_3                          2                           25
D11V4, multiclass
        clus
vv       AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                          4                           16
  CLUS_2                          2                           22
  CLUS_3                          2                           47
D11V5, multiclass
        clus
vv       AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                          4                           37
  CLUS_2                          2                           35
  CLUS_3                          2                           34
D11V6, multiclass
        clus
vv       AMP PEAK 11(11P13) MUTATED AMP PEAK 11(11P13) WILD-TYPE
  CLUS_1                          2                           28
  CLUS_2                          3                           49
  CLUS_3                          3                           29

Clustering(12) Variable = Amp Peak 12(11q13.3) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                            4                             31
  CLUS_2                            8                             17
  CLUS_3                            4                             50
D12V2, multiclass
D12V3, multiclass
        clus
vv       AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            8                             17
  CLUS_3                            2                             25
D12V4, multiclass
        clus
vv       AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                            7                             13
  CLUS_2                            3                             21
  CLUS_3                            4                             45
D12V5, multiclass
        clus
vv       AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                            2                             35
  CLUS_3                            5                             31
D12V6, multiclass
        clus
vv       AMP PEAK 12(11Q13.3) MUTATED AMP PEAK 12(11Q13.3) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                            7                             45
  CLUS_3                            4                             28

Clustering(13) Variable = Amp Peak 13(11q22.1) mutation analysis
D13V1, multiclass
        clus
vv       AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                            3                             32
  CLUS_2                           11                             14
  CLUS_3                           10                             44
D13V2, multiclass
D13V3, multiclass
        clus
vv       AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           10                             15
  CLUS_3                            2                             25
D13V4, multiclass
        clus
vv       AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                            7                             13
  CLUS_2                            5                             19
  CLUS_3                            8                             41
D13V5, multiclass
        clus
vv       AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                           15                             26
  CLUS_2                            5                             32
  CLUS_3                            4                             32
D13V6, multiclass
        clus
vv       AMP PEAK 13(11Q22.1) MUTATED AMP PEAK 13(11Q22.1) WILD-TYPE
  CLUS_1                            3                             27
  CLUS_2                           15                             37
  CLUS_3                            6                             26

Clustering(14) Variable = Amp Peak 14(13q22.1) mutation analysis
D14V1, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                            3                             32
  CLUS_2                            8                             17
  CLUS_3                           13                             41
D14V2, multiclass
D14V3, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            8                             17
  CLUS_3                            6                             21
D14V4, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            6                             18
  CLUS_3                            6                             43
D14V5, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                           10                             31
  CLUS_2                            4                             33
  CLUS_3                           10                             26
D14V6, multiclass
        clus
vv       AMP PEAK 14(13Q22.1) MUTATED AMP PEAK 14(13Q22.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                            6                             46
  CLUS_3                           12                             20

Clustering(15) Variable = Amp Peak 15(14q24.1) mutation analysis
D15V1, multiclass
        clus
vv       AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                            6                             29
  CLUS_2                            6                             19
  CLUS_3                           11                             43
D15V2, multiclass
D15V3, multiclass
        clus
vv       AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                            7                             34
  CLUS_2                            7                             18
  CLUS_3                            7                             20
D15V4, multiclass
        clus
vv       AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                            7                             13
  CLUS_2                            7                             17
  CLUS_3                            7                             42
D15V5, multiclass
        clus
vv       AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                           10                             31
  CLUS_2                            7                             30
  CLUS_3                            6                             30
D15V6, multiclass
        clus
vv       AMP PEAK 15(14Q24.1) MUTATED AMP PEAK 15(14Q24.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           10                             42
  CLUS_3                            7                             25

Clustering(16) Variable = Amp Peak 16(15q26.3) mutation analysis
D16V1, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           14                             21
  CLUS_2                            4                             21
  CLUS_3                           11                             43
D16V2, multiclass
D16V3, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           13                             28
  CLUS_2                            3                             22
  CLUS_3                            7                             20
D16V4, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            3                             17
  CLUS_2                            6                             18
  CLUS_3                           14                             35
D16V5, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                           10                             31
  CLUS_2                            9                             28
  CLUS_3                           10                             26
D16V6, multiclass
        clus
vv       AMP PEAK 16(15Q26.3) MUTATED AMP PEAK 16(15Q26.3) WILD-TYPE
  CLUS_1                            8                             22
  CLUS_2                           13                             39
  CLUS_3                            8                             24

Clustering(17) Variable = Amp Peak 17(16p13.13) mutation analysis
D17V1, multiclass
        clus
vv       AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                            12                              23
  CLUS_2                             3                              22
  CLUS_3                            13                              41
D17V2, multiclass
D17V3, multiclass
        clus
vv       AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                             7                              34
  CLUS_2                             4                              21
  CLUS_3                             7                              20
D17V4, multiclass
        clus
vv       AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                             2                              18
  CLUS_2                             6                              18
  CLUS_3                            10                              39
D17V5, multiclass
        clus
vv       AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                             8                              33
  CLUS_2                            10                              27
  CLUS_3                            10                              26
D17V6, multiclass
        clus
vv       AMP PEAK 17(16P13.13) MUTATED AMP PEAK 17(16P13.13) WILD-TYPE
  CLUS_1                            10                              20
  CLUS_2                            11                              41
  CLUS_3                             7                              25

Clustering(18) Variable = Amp Peak 18(17q12) mutation analysis
D18V1, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          9                           26
  CLUS_2                          4                           21
  CLUS_3                          6                           48
D18V2, multiclass
D18V3, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          5                           36
  CLUS_2                          1                           24
  CLUS_3                          8                           19
D18V4, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          1                           19
  CLUS_2                          8                           16
  CLUS_3                          5                           44
D18V5, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          4                           37
  CLUS_2                          5                           32
  CLUS_3                         10                           26
D18V6, multiclass
        clus
vv       AMP PEAK 18(17Q12) MUTATED AMP PEAK 18(17Q12) WILD-TYPE
  CLUS_1                          9                           21
  CLUS_2                          5                           47
  CLUS_3                          5                           27

Clustering(19) Variable = Amp Peak 19(17q25.1) mutation analysis
D19V1, multiclass
        clus
vv       AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                           13                             22
  CLUS_2                            6                             19
  CLUS_3                           11                             43
D19V2, multiclass
D19V3, multiclass
        clus
vv       AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                           10                             31
  CLUS_2                            2                             23
  CLUS_3                           11                             16
D19V4, multiclass
        clus
vv       AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                           11                             13
  CLUS_3                           10                             39
D19V5, multiclass
        clus
vv       AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                           11                             26
  CLUS_3                           11                             25
D19V6, multiclass
        clus
vv       AMP PEAK 19(17Q25.1) MUTATED AMP PEAK 19(17Q25.1) WILD-TYPE
  CLUS_1                           10                             20
  CLUS_2                           12                             40
  CLUS_3                            8                             24

Clustering(20) Variable = Amp Peak 20(19q13.31) mutation analysis
D20V1, multiclass
        clus
vv       AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE
  CLUS_1                            11                              24
  CLUS_2                            16                               9
  CLUS_3                            11                              43
D20V2, multiclass
D20V3, multiclass
        clus
vv       AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE
  CLUS_1                            12                              29
  CLUS_2                            11                              14
  CLUS_3                            12                              15
D20V4, multiclass
        clus
vv       AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE
  CLUS_1                             8                              12
  CLUS_2                            13                              11
  CLUS_3                            14                              35
D20V5, multiclass
        clus
vv       AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE
  CLUS_1                            10                              31
  CLUS_2                            11                              26
  CLUS_3                            17                              19
D20V6, multiclass
        clus
vv       AMP PEAK 20(19Q13.31) MUTATED AMP PEAK 20(19Q13.31) WILD-TYPE
  CLUS_1                            11                              19
  CLUS_2                            16                              36
  CLUS_3                            11                              21

Clustering(21) Variable = Amp Peak 21(20q11.21) mutation analysis
D21V1, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            22                              13
  CLUS_2                            15                              10
  CLUS_3                            20                              34
D21V2, multiclass
D21V3, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            21                              20
  CLUS_2                            10                              15
  CLUS_3                            15                              12
D21V4, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                             7                              13
  CLUS_2                            17                               7
  CLUS_3                            22                              27
D21V5, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            18                              23
  CLUS_2                            21                              16
  CLUS_3                            18                              18
D21V6, multiclass
        clus
vv       AMP PEAK 21(20Q11.21) MUTATED AMP PEAK 21(20Q11.21) WILD-TYPE
  CLUS_1                            17                              13
  CLUS_2                            25                              27
  CLUS_3                            15                              17

Clustering(22) Variable = Amp Peak 22(Xq28) mutation analysis
D22V1, multiclass
        clus
vv       AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         9                          26
  CLUS_2                        10                          15
  CLUS_3                        15                          39
D22V2, multiclass
D22V3, multiclass
        clus
vv       AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                        12                          29
  CLUS_2                        11                          14
  CLUS_3                         6                          21
D22V4, multiclass
        clus
vv       AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         7                          13
  CLUS_2                         7                          17
  CLUS_3                        15                          34
D22V5, multiclass
        clus
vv       AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                        18                          23
  CLUS_2                         7                          30
  CLUS_3                         9                          27
D22V6, multiclass
        clus
vv       AMP PEAK 22(XQ28) MUTATED AMP PEAK 22(XQ28) WILD-TYPE
  CLUS_1                         7                          23
  CLUS_2                        13                          39
  CLUS_3                        14                          18

Clustering(23) Variable = Del Peak  1(1p36.22) mutation analysis
D23V1, multiclass
        clus
vv       DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            5                             30
  CLUS_2                            8                             17
  CLUS_3                            5                             49
D23V2, multiclass
D23V3, multiclass
        clus
vv       DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            5                             20
  CLUS_3                            9                             18
D23V4, multiclass
        clus
vv       DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                            9                             15
  CLUS_3                            4                             45
D23V5, multiclass
        clus
vv       DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            5                             32
  CLUS_3                            8                             28
D23V6, multiclass
        clus
vv       DEL PEAK  1(1P36.22) MUTATED DEL PEAK  1(1P36.22) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                            1                             51
  CLUS_3                            8                             24

Clustering(24) Variable = Del Peak  2(2q22.1) mutation analysis
D24V1, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           4                            31
  CLUS_2                           6                            19
  CLUS_3                          11                            43
D24V2, multiclass
D24V3, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           9                            32
  CLUS_2                           7                            18
  CLUS_3                           2                            25
D24V4, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           6                            14
  CLUS_2                           4                            20
  CLUS_3                           8                            41
D24V5, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                           6                            31
  CLUS_3                           7                            29
D24V6, multiclass
        clus
vv       DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE
  CLUS_1                           6                            24
  CLUS_2                           9                            43
  CLUS_3                           6                            26

Clustering(25) Variable = Del Peak  3(2q37.1) mutation analysis
D25V1, multiclass
        clus
vv       DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                          13                            22
  CLUS_2                          12                            13
  CLUS_3                          21                            33
D25V2, multiclass
D25V3, multiclass
        clus
vv       DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                          21                            20
  CLUS_2                          14                            11
  CLUS_3                           4                            23
D25V4, multiclass
        clus
vv       DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                           5                            19
  CLUS_3                          22                            27
D25V5, multiclass
        clus
vv       DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                          21                            20
  CLUS_2                          14                            23
  CLUS_3                          11                            25
D25V6, multiclass
        clus
vv       DEL PEAK  3(2Q37.1) MUTATED DEL PEAK  3(2Q37.1) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          23                            29
  CLUS_3                          16                            16

Clustering(26) Variable = Del Peak  4(3p11.2) mutation analysis
D26V1, multiclass
        clus
vv       DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE
  CLUS_1                          12                            23
  CLUS_2                          19                             6
  CLUS_3                          16                            38
D26V2, multiclass
D26V3, multiclass
        clus
vv       DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE
  CLUS_1                          18                            23
  CLUS_2                          14                            11
  CLUS_3                          11                            16
D26V4, multiclass
        clus
vv       DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                          11                            13
  CLUS_3                          20                            29
D26V5, multiclass
        clus
vv       DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE
  CLUS_1                          22                            19
  CLUS_2                          12                            25
  CLUS_3                          13                            23
D26V6, multiclass
        clus
vv       DEL PEAK  4(3P11.2) MUTATED DEL PEAK  4(3P11.2) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          20                            32
  CLUS_3                          20                            12

Clustering(27) Variable = Del Peak  5(4q22.1) mutation analysis
D27V1, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           9                            26
  CLUS_2                          19                             6
  CLUS_3                           6                            48
D27V2, multiclass
D27V3, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          10                            31
  CLUS_2                          13                            12
  CLUS_3                           8                            19
D27V4, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          10                            10
  CLUS_2                           7                            17
  CLUS_3                          14                            35
D27V5, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                          15                            26
  CLUS_2                           7                            30
  CLUS_3                          12                            24
D27V6, multiclass
        clus
vv       DEL PEAK  5(4Q22.1) MUTATED DEL PEAK  5(4Q22.1) WILD-TYPE
  CLUS_1                           8                            22
  CLUS_2                          13                            39
  CLUS_3                          13                            19

Clustering(28) Variable = Del Peak  6(4q35.2) mutation analysis
D28V1, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          10                            25
  CLUS_2                          20                             5
  CLUS_3                          12                            42
D28V2, multiclass
D28V3, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          11                            30
  CLUS_2                          14                            11
  CLUS_3                          10                            17
D28V4, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          12                             8
  CLUS_2                           9                            15
  CLUS_3                          14                            35
D28V5, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          17                            24
  CLUS_2                          11                            26
  CLUS_3                          14                            22
D28V6, multiclass
        clus
vv       DEL PEAK  6(4Q35.2) MUTATED DEL PEAK  6(4Q35.2) WILD-TYPE
  CLUS_1                          11                            19
  CLUS_2                          16                            36
  CLUS_3                          15                            17

Clustering(29) Variable = Del Peak  7(5q15) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         9                          26
  CLUS_2                        13                          12
  CLUS_3                        11                          43
D29V2, multiclass
D29V3, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                        15                          26
  CLUS_2                         9                          16
  CLUS_3                         7                          20
D29V4, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                        10                          10
  CLUS_2                         7                          17
  CLUS_3                        14                          35
D29V5, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                        15                          26
  CLUS_2                         7                          30
  CLUS_3                        11                          25
D29V6, multiclass
        clus
vv       DEL PEAK  7(5Q15) MUTATED DEL PEAK  7(5Q15) WILD-TYPE
  CLUS_1                         6                          24
  CLUS_2                        15                          37
  CLUS_3                        12                          20

Clustering(30) Variable = Del Peak  8(6p24.3) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           5                            30
  CLUS_2                           1                            24
  CLUS_3                          12                            42
D30V2, multiclass
D30V3, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                          10                            31
  CLUS_2                           1                            24
  CLUS_3                           3                            24
D30V4, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           2                            18
  CLUS_2                           2                            22
  CLUS_3                          10                            39
D30V5, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           6                            35
  CLUS_2                           8                            29
  CLUS_3                           4                            32
D30V6, multiclass
        clus
vv       DEL PEAK  8(6P24.3) MUTATED DEL PEAK  8(6P24.3) WILD-TYPE
  CLUS_1                           5                            25
  CLUS_2                           8                            44
  CLUS_3                           5                            27

Clustering(31) Variable = Del Peak  9(6p12.1) mutation analysis
D31V1, multiclass
        clus
vv       DEL PEAK  9(6P12.1) MUTATED DEL PEAK  9(6P12.1) WILD-TYPE
  CLUS_1                           5                            30
  CLUS_2                           3                            22
  CLUS_3                          11                            43
D31V2, multiclass
D31V3, multiclass
        clus
vv       DEL PEAK  9(6P12.1) MUTATED DEL PEAK  9(6P12.1) WILD-TYPE
  CLUS_1                           9                            32
  CLUS_2                           4                            21
  CLUS_3                           2                            25
D31V4, multiclass
        clus
vv       DEL PEAK  9(6P12.1) MUTATED DEL PEAK  9(6P12.1) WILD-TYPE
  CLUS_1                           3                            17
  CLUS_2                           1                            23
  CLUS_3                          11                            38
D31V5, multiclass
        clus
vv       DEL PEAK  9(6P12.1) MUTATED DEL PEAK  9(6P12.1) WILD-TYPE
  CLUS_1                           8                            33
  CLUS_2                           6                            31
  CLUS_3                           5                            31
D31V6, multiclass
        clus
vv       DEL PEAK  9(6P12.1) MUTATED DEL PEAK  9(6P12.1) WILD-TYPE
  CLUS_1                           4                            26
  CLUS_2                           6                            46
  CLUS_3                           9                            23

Clustering(32) Variable = Del Peak 10(6q26) mutation analysis
D32V1, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        13                          22
  CLUS_2                        11                          14
  CLUS_3                        19                          35
D32V2, multiclass
D32V3, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        17                          24
  CLUS_2                         8                          17
  CLUS_3                        12                          15
D32V4, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         6                          14
  CLUS_2                        10                          14
  CLUS_3                        21                          28
D32V5, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        17                          24
  CLUS_2                        15                          22
  CLUS_3                        11                          25
D32V6, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        10                          20
  CLUS_2                        18                          34
  CLUS_3                        15                          17

Clustering(33) Variable = Del Peak 11(7q34) mutation analysis
D33V1, multiclass
        clus
vv       DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  CLUS_1                         7                          28
  CLUS_2                        10                          15
  CLUS_3                         9                          45
D33V2, multiclass
D33V3, multiclass
        clus
vv       DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  CLUS_1                         7                          34
  CLUS_2                         9                          16
  CLUS_3                         7                          20
D33V4, multiclass
        clus
vv       DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  CLUS_1                         9                          11
  CLUS_2                         7                          17
  CLUS_3                         7                          42
D33V5, multiclass
        clus
vv       DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  CLUS_1                        13                          28
  CLUS_2                         4                          33
  CLUS_3                         9                          27
D33V6, multiclass
        clus
vv       DEL PEAK 11(7Q34) MUTATED DEL PEAK 11(7Q34) WILD-TYPE
  CLUS_1                         5                          25
  CLUS_2                        10                          42
  CLUS_3                        11                          21

Clustering(34) Variable = Del Peak 12(10q23.31) mutation analysis
D34V1, multiclass
        clus
vv       DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  CLUS_1                            10                              25
  CLUS_2                            10                              15
  CLUS_3                            15                              39
D34V2, multiclass
D34V3, multiclass
        clus
vv       DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  CLUS_1                            12                              29
  CLUS_2                            10                              15
  CLUS_3                             9                              18
D34V4, multiclass
        clus
vv       DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  CLUS_1                             6                              14
  CLUS_2                            11                              13
  CLUS_3                            14                              35
D34V5, multiclass
        clus
vv       DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  CLUS_1                            11                              30
  CLUS_2                            13                              24
  CLUS_3                            11                              25
D34V6, multiclass
        clus
vv       DEL PEAK 12(10Q23.31) MUTATED DEL PEAK 12(10Q23.31) WILD-TYPE
  CLUS_1                             8                              22
  CLUS_2                            17                              35
  CLUS_3                            10                              22

Clustering(35) Variable = Del Peak 13(11q25) mutation analysis
D35V1, multiclass
        clus
vv       DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE
  CLUS_1                         30                            5
  CLUS_2                         16                            9
  CLUS_3                         22                           32
D35V2, multiclass
D35V3, multiclass
        clus
vv       DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE
  CLUS_1                         28                           13
  CLUS_2                         15                           10
  CLUS_3                         13                           14
D35V4, multiclass
        clus
vv       DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE
  CLUS_1                          9                           11
  CLUS_2                         14                           10
  CLUS_3                         33                           16
D35V5, multiclass
        clus
vv       DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE
  CLUS_1                         30                           11
  CLUS_2                         16                           21
  CLUS_3                         22                           14
D35V6, multiclass
        clus
vv       DEL PEAK 13(11Q25) MUTATED DEL PEAK 13(11Q25) WILD-TYPE
  CLUS_1                         15                           15
  CLUS_2                         32                           20
  CLUS_3                         21                           11

Clustering(36) Variable = Del Peak 14(13q12.12) mutation analysis
D36V1, multiclass
        clus
vv       DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE
  CLUS_1                            13                              22
  CLUS_2                            16                               9
  CLUS_3                            16                              38
D36V2, multiclass
D36V3, multiclass
        clus
vv       DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE
  CLUS_1                            14                              27
  CLUS_2                            14                              11
  CLUS_3                            13                              14
D36V4, multiclass
        clus
vv       DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE
  CLUS_1                            11                               9
  CLUS_2                            11                              13
  CLUS_3                            19                              30
D36V5, multiclass
        clus
vv       DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE
  CLUS_1                            21                              20
  CLUS_2                            11                              26
  CLUS_3                            13                              23
D36V6, multiclass
        clus
vv       DEL PEAK 14(13Q12.12) MUTATED DEL PEAK 14(13Q12.12) WILD-TYPE
  CLUS_1                             8                              22
  CLUS_2                            21                              31
  CLUS_3                            16                              16

Clustering(37) Variable = Del Peak 15(13q13.3) mutation analysis
D37V1, multiclass
        clus
vv       DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE
  CLUS_1                           12                             23
  CLUS_2                           17                              8
  CLUS_3                           18                             36
D37V2, multiclass
D37V3, multiclass
        clus
vv       DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE
  CLUS_1                           15                             26
  CLUS_2                           14                             11
  CLUS_3                           11                             16
D37V4, multiclass
        clus
vv       DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE
  CLUS_1                           11                              9
  CLUS_2                           10                             14
  CLUS_3                           19                             30
D37V5, multiclass
        clus
vv       DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE
  CLUS_1                           24                             17
  CLUS_2                           11                             26
  CLUS_3                           12                             24
D37V6, multiclass
        clus
vv       DEL PEAK 15(13Q13.3) MUTATED DEL PEAK 15(13Q13.3) WILD-TYPE
  CLUS_1                            8                             22
  CLUS_2                           22                             30
  CLUS_3                           17                             15

Clustering(38) Variable = Del Peak 16(14q31.1) mutation analysis
D38V1, multiclass
        clus
vv       DEL PEAK 16(14Q31.1) MUTATED DEL PEAK 16(14Q31.1) WILD-TYPE
  CLUS_1                            5                             30
  CLUS_2                            7                             18
  CLUS_3                            6                             48
D38V2, multiclass
D38V3, multiclass
        clus
vv       DEL PEAK 16(14Q31.1) MUTATED DEL PEAK 16(14Q31.1) WILD-TYPE
  CLUS_1                            2                             39
  CLUS_2                            3                             22
  CLUS_3                            9                             18
D38V4, multiclass
        clus
vv       DEL PEAK 16(14Q31.1) MUTATED DEL PEAK 16(14Q31.1) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            9                             15
  CLUS_3                            3                             46
D38V5, multiclass
        clus
vv       DEL PEAK 16(14Q31.1) MUTATED DEL PEAK 16(14Q31.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            6                             31
  CLUS_3                            9                             27
D38V6, multiclass
        clus
vv       DEL PEAK 16(14Q31.1) MUTATED DEL PEAK 16(14Q31.1) WILD-TYPE
  CLUS_1                            9                             21
  CLUS_2                            4                             48
  CLUS_3                            5                             27

Clustering(39) Variable = Del Peak 17(14q32.31) mutation analysis
D39V1, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             6                              29
  CLUS_2                             8                              17
  CLUS_3                             7                              47
D39V2, multiclass
D39V3, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             2                              39
  CLUS_2                             3                              22
  CLUS_3                            11                              16
D39V4, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             2                              18
  CLUS_2                            11                              13
  CLUS_3                             3                              46
D39V5, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                             4                              37
  CLUS_2                             5                              32
  CLUS_3                            12                              24
D39V6, multiclass
        clus
vv       DEL PEAK 17(14Q32.31) MUTATED DEL PEAK 17(14Q32.31) WILD-TYPE
  CLUS_1                            11                              19
  CLUS_2                             4                              48
  CLUS_3                             6                              26

Clustering(40) Variable = Del Peak 18(16q11.2) mutation analysis
D40V1, multiclass
        clus
vv       DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                            4                             21
  CLUS_3                            8                             46
D40V2, multiclass
D40V3, multiclass
        clus
vv       DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            3                             22
  CLUS_3                            6                             21
D40V4, multiclass
        clus
vv       DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            1                             19
  CLUS_2                            6                             18
  CLUS_3                            8                             41
D40V5, multiclass
        clus
vv       DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                            4                             37
  CLUS_2                            7                             30
  CLUS_3                           10                             26
D40V6, multiclass
        clus
vv       DEL PEAK 18(16Q11.2) MUTATED DEL PEAK 18(16Q11.2) WILD-TYPE
  CLUS_1                           12                             18
  CLUS_2                            4                             48
  CLUS_3                            5                             27

Clustering(41) Variable = Del Peak 19(16q23.1) mutation analysis
D41V1, multiclass
        clus
vv       DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE
  CLUS_1                            8                             27
  CLUS_2                            5                             20
  CLUS_3                           11                             43
D41V2, multiclass
D41V3, multiclass
        clus
vv       DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE
  CLUS_1                            3                             38
  CLUS_2                            6                             19
  CLUS_3                            7                             20
D41V4, multiclass
        clus
vv       DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE
  CLUS_1                            4                             16
  CLUS_2                            7                             17
  CLUS_3                            5                             44
D41V5, multiclass
        clus
vv       DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                            8                             29
  CLUS_3                           11                             25
D41V6, multiclass
        clus
vv       DEL PEAK 19(16Q23.1) MUTATED DEL PEAK 19(16Q23.1) WILD-TYPE
  CLUS_1                           14                             16
  CLUS_2                            4                             48
  CLUS_3                            6                             26

Clustering(42) Variable = Del Peak 20(17p12) mutation analysis
D42V1, multiclass
        clus
vv       DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE
  CLUS_1                         13                           22
  CLUS_2                         15                           10
  CLUS_3                         10                           44
D42V2, multiclass
D42V3, multiclass
        clus
vv       DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE
  CLUS_1                         15                           26
  CLUS_2                         12                           13
  CLUS_3                          7                           20
D42V4, multiclass
        clus
vv       DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE
  CLUS_1                          8                           12
  CLUS_2                          7                           17
  CLUS_3                         19                           30
D42V5, multiclass
        clus
vv       DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE
  CLUS_1                         19                           22
  CLUS_2                         10                           27
  CLUS_3                          9                           27
D42V6, multiclass
        clus
vv       DEL PEAK 20(17P12) MUTATED DEL PEAK 20(17P12) WILD-TYPE
  CLUS_1                          6                           24
  CLUS_2                         16                           36
  CLUS_3                         16                           16

Clustering(43) Variable = Del Peak 21(17q25.3) mutation analysis
D43V1, multiclass
        clus
vv       DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                            2                             33
  CLUS_2                            8                             17
  CLUS_3                            9                             45
D43V2, multiclass
D43V3, multiclass
        clus
vv       DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                            8                             17
  CLUS_3                            1                             26
D43V4, multiclass
        clus
vv       DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                            7                             13
  CLUS_2                            2                             22
  CLUS_3                            9                             40
D43V5, multiclass
        clus
vv       DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                            4                             33
  CLUS_3                            3                             33
D43V6, multiclass
        clus
vv       DEL PEAK 21(17Q25.3) MUTATED DEL PEAK 21(17Q25.3) WILD-TYPE
  CLUS_1                            2                             28
  CLUS_2                            8                             44
  CLUS_3                            9                             23

Clustering(44) Variable = Del Peak 22(19p13.3) mutation analysis
D44V1, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           12                             23
  CLUS_2                           11                             14
  CLUS_3                           11                             43
D44V2, multiclass
D44V3, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                            5                             36
  CLUS_2                           14                             11
  CLUS_3                           13                             14
D44V4, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           13                              7
  CLUS_2                           11                             13
  CLUS_3                            8                             41
D44V5, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           12                             29
  CLUS_2                            6                             31
  CLUS_3                           16                             20
D44V6, multiclass
        clus
vv       DEL PEAK 22(19P13.3) MUTATED DEL PEAK 22(19P13.3) WILD-TYPE
  CLUS_1                           13                             17
  CLUS_2                            5                             47
  CLUS_3                           16                             16

Clustering(45) Variable = Del Peak 23(20p12.1) mutation analysis
D45V1, multiclass
        clus
vv       DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                            5                             30
  CLUS_2                            2                             23
  CLUS_3                            6                             48
D45V2, multiclass
D45V3, multiclass
        clus
vv       DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                            6                             35
  CLUS_2                            2                             23
  CLUS_3                            2                             25
D45V4, multiclass
        clus
vv       DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                            2                             18
  CLUS_2                            2                             22
  CLUS_3                            6                             43
D45V5, multiclass
        clus
vv       DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                            7                             34
  CLUS_2                            3                             34
  CLUS_3                            3                             33
D45V6, multiclass
        clus
vv       DEL PEAK 23(20P12.1) MUTATED DEL PEAK 23(20P12.1) WILD-TYPE
  CLUS_1                            4                             26
  CLUS_2                            4                             48
  CLUS_3                            5                             27

Clustering(46) Variable = Del Peak 24(21q21.1) mutation analysis
D46V1, multiclass
        clus
vv       DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            9                             26
  CLUS_2                           10                             15
  CLUS_3                            5                             49
D46V2, multiclass
D46V3, multiclass
        clus
vv       DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            8                             33
  CLUS_2                            8                             17
  CLUS_3                            6                             21
D46V4, multiclass
        clus
vv       DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            8                             12
  CLUS_2                            6                             18
  CLUS_3                            8                             41
D46V5, multiclass
        clus
vv       DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                           11                             30
  CLUS_2                            6                             31
  CLUS_3                            7                             29
D46V6, multiclass
        clus
vv       DEL PEAK 24(21Q21.1) MUTATED DEL PEAK 24(21Q21.1) WILD-TYPE
  CLUS_1                            6                             24
  CLUS_2                           10                             42
  CLUS_3                            8                             24

Clustering(47) Variable = Del Peak 25(Xp11.3) mutation analysis
D47V1, multiclass
        clus
vv       DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE
  CLUS_1                           9                            26
  CLUS_2                          12                            13
  CLUS_3                          13                            41
D47V2, multiclass
D47V3, multiclass
        clus
vv       DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE
  CLUS_1                          13                            28
  CLUS_2                          14                            11
  CLUS_3                           5                            22
D47V4, multiclass
        clus
vv       DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE
  CLUS_1                          11                             9
  CLUS_2                           4                            20
  CLUS_3                          17                            32
D47V5, multiclass
        clus
vv       DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE
  CLUS_1                          18                            23
  CLUS_2                           5                            32
  CLUS_3                          11                            25
D47V6, multiclass
        clus
vv       DEL PEAK 25(XP11.3) MUTATED DEL PEAK 25(XP11.3) WILD-TYPE
  CLUS_1                           7                            23
  CLUS_2                          10                            42
  CLUS_3                          17                            15

Clustering(48) Variable = Del Peak 26(Xq21.33) mutation analysis
D48V1, multiclass
        clus
vv       DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE
  CLUS_1                            7                             28
  CLUS_2                            8                             17
  CLUS_3                           12                             42
D48V2, multiclass
D48V3, multiclass
        clus
vv       DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE
  CLUS_1                            9                             32
  CLUS_2                           11                             14
  CLUS_3                            5                             22
D48V4, multiclass
        clus
vv       DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE
  CLUS_1                            9                             11
  CLUS_2                            5                             19
  CLUS_3                           11                             38
D48V5, multiclass
        clus
vv       DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE
  CLUS_1                           14                             27
  CLUS_2                            5                             32
  CLUS_3                            8                             28
D48V6, multiclass
        clus
vv       DEL PEAK 26(XQ21.33) MUTATED DEL PEAK 26(XQ21.33) WILD-TYPE
  CLUS_1                            5                             25
  CLUS_2                            8                             44
  CLUS_3                           14                             18
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"          "MRNASEQ_CNMF" 
                     V4                      V5                      V6 
"MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
