GDAC_MergedClusteringPipeline Execution Log 3:55 PM Mon Mar 4, '13

Running as user: cgaadm_deadline

GDAC_mergedClustering1 copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2661775/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
GDAC_mergedClustering1 methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2661092/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
GDAC_mergedClustering1 mergedfile CESC-TP
GDAC_mergedClustering1 mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2660893/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
GDAC_mergedClustering1 mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/CESC-TP/2660895/3.GDAC_selectBestcluster.Finished/CESC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2660909/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
GDAC_mergedClustering1 miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/CESC-TP/2660907/3.GDAC_selectBestcluster.Finished/CESC-TP.bestclus.txt
Execution Times:
Submitted: 15:55:08 04-03-13
Completed:
Elapsed: 00 hrs 00 mins 59 secs

step 1. GDAC_mergedClustering [id: 334092] merge all clustering result

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00253:22
mrnacnmf
mrnahc
mirnacnmf
mirnahc
copynumber file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2661775/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
methlyationhc
methlyationcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2661092/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
mergedfile CESC-TP
PredictionU133aTCGA
PredictionU133aPhilips
PredictionUNCTCGA
mRNAseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2660893/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
mRNAseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/CESC-TP/2660895/3.GDAC_selectBestcluster.Finished/CESC-TP.bestclus.txt
miRseqcnmf file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CnmfIntegratedPipeline/CESC-TP/2660909/3.GDAC_CNMFselectcluster.Finished/CESC-TP.bestclus.txt
miRseqhc file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_RNAseq_ConsensusClusteringPipeline/CESC-TP/2660907/3.GDAC_selectBestcluster.Finished/CESC-TP.bestclus.txt
Output Files:
 CESC-TP.mergedcluster.txt
 .lsf.out
 CESC-TP.transferedmergedcluster.txt
 stdout.txt
Execution Times:
Submitted: 15:55:08 04-03-13
Completed: 15:55:34 04-03-13
Elapsed: 00 hrs 00 mins 25 secs

step 2. GDAC_mergedReport [id: 334093]

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00254:3
mergedcluster CESC-TP.mergedcluster.txt
Output Files:
 report.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 15:55:08 04-03-13
Completed: 15:56:05 04-03-13
Elapsed: 00 hrs 00 mins 56 secs