
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.84.4098/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.84.4098/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/HNSC-TP/2666388/1.GDAC_mergedClustering.Finished/HNSC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/HNSC-TP/2587692/1.GDAC_clinicalDataPicker.Finished/HNSC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=325, in cluster file=328, common to both=325
[1]   8 325
[1] "CN_CNMF"
[1] 3
 1  2  3  4  5  6  7 
66 41 46 84 21 10 51 
 1  2  3  4  5  6  7 
66 41 46 84 21 10 51 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4  5  6  7  8 
43 47 40 44 58 53  5 19 
 1  2  3  4  5  6  7  8 
43 47 40 44 58 53  5 19 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
82 85 45 
 1  2  3 
82 85 45 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
115  81  16 
  1   2   3 
115  81  16 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
118  93  91 
  1   2   3 
118  93  91 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 97  85 120 
  1   2   3 
 97  85 120 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
102 127  94 
  1   2   3 
102 127  94 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
182 131  10 
  1   2   3 
182 131  10 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "TUMORSTAGE"                            
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "NUMBERPACKYEARSSMOKED"                 
[17] "STOPPEDSMOKINGYEAR"                    
[18] "TOBACCOSMOKINGHISTORYINDICATOR"        
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 325 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         461          283          415         1134          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         190          845         1761          186          179          242 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1635         1747          152          244           NA           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
          NA          113          236          186         2891          275 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7863 
         140          133          557          310          535          422 
TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 TCGA-BB-7872 TCGA-BB-8596 
         718          638         1152          427          436         2161 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
         624          192          412          310          142          194 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4734 
         325          166          343          383          522          226 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
         369          395          240          436          348          810 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
         875          397          279          289          173          377 
TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
         866          193          252          493          351          360 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
         352          380           NA          413          274          207 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
         228          143          154          201          159           45 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
         134           97          276          201          188          224 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
          42          177           83          119           NA          114 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
         100           46         1465         1207          654           NA 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5333 
        1183          841          896         1028          317          341 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6222 
         128          870           NA           NA         1000         1160 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
        1057          984           NA           NA           NA          814 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CQ-7068 TCGA-CQ-7069 
        1461         1377         1006          508          693          900 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
        2562          358         1662         1152          798         1777 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
        1521           NA         1050         1125           NA          514 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
          NA          362          311          345          354          233 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
         379          350          479           NA         1435         1190 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
        1440         1244           NA          104           NA          759 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
         889           30          972           NA         1036           NA 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
         796           NA          997         1430           NA          392 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
         907          913          946          908          898          929 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
         216          156          180         1077          910         1471 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
        4115          522         3930         3295         1438          584 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
         546         2732         2663         2326         2567         1969 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
         519          406          540         1736         1478         1007 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
         215         1315         1246          405          743          179 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
          NA           NA           NA         3835           NA           NA 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
          NA         3836         3380           NA           NA           NA 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
          NA           NA         3496         1724           NA         1444 
TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        1095          953          797           NA           NA           NA 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
          NA           NA           NA           NA         1099           NA 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
          NA           NA           NA           NA         4334           NA 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CV-7446 TCGA-CV-7568 TCGA-CX-7082 TCGA-CX-7085 
          NA           NA           NA           NA          316          321 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
         236          828          403          325          250          238 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
          77          152          153          127         1149         1058 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
         516          477          548           NA          575          661 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-DQ-7593 TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 
         360          299          369          368          324           35 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-7774 TCGA-H7-8501 TCGA-H7-8502 TCGA-HD-7229 
          14           13           30           57           NA            2 
TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7831 TCGA-HD-7832 TCGA-HD-7917 TCGA-HD-8224 
           5           25           NA           NA           31           55 
TCGA-HD-8314 TCGA-HD-8634 TCGA-HD-8635 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7631 
          44           30           30          692          160          122 
TCGA-IQ-7632 
         113 
Variable 1:'AGE':	nDistinctValues=57,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=119,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=214,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=96,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBERPACKYEARSSMOKED':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'STOPPEDSMOKINGYEAR':	nDistinctValues=48,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=54,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "PATHOLOGY.T"                           
 [4] "PATHOLOGY.N"                           
 [5] "PATHOLOGICSPREAD(M)"                   
 [6] "TUMOR.STAGE"                           
 [7] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [8] "NUMBERPACKYEARSSMOKED"                 
 [9] "STOPPEDSMOKINGYEAR"                    
[10] "TOBACCOSMOKINGHISTORYINDICATOR"        
[11] "YEAROFTOBACCOSMOKINGONSET"             
[1] "TUMOR.?STAGE" "6"           
[1] "stage2"
vv
  1   2   3   4 
 20  50  45 162 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 325 columns, 1 survival variables, and 11 non-survival variables.
AGE, nv=57, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 28  82  66 106 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 28  82  66 106 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 28  82  66 106 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 28  82  66 106 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
106  36 103   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
106  36 103   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
106  36 103   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
106  36 103   5 
PATHOLOGICSPREAD(M), nv=2, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 20  50  45 162 
[1] "table(vv)"
vv
  I  II III  IV 
 20  50  45 162 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 20  50  45 162 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 20  50  45 162 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=72, binary=FALSE, numeric=TRUE
STOPPEDSMOKINGYEAR, nv=48, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=54, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 31 34
  subtype2 23 18
  subtype3 30 16
  subtype4 66 18
  subtype5 12  8
  subtype6  7  3
  subtype7 25 24
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      65       41       46       84       20       10       49 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      34       18       16       18        8        3       24 
$subtype1
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6870 
       15.16        13.64        37.28         8.15         5.00        14.79 
TCGA-BA-6871 TCGA-BA-7269 TCGA-BB-4227 TCGA-BB-7870 TCGA-BB-8596 TCGA-CN-4727 
        2.07         7.76         4.37        37.87        71.05         6.38 
TCGA-CN-4728 TCGA-CN-4735 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       10.68        12.13         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6020 TCGA-CN-6989 TCGA-CN-6995 
       11.57         7.50         5.06         3.19         5.82         3.68 
TCGA-CQ-6228 TCGA-CQ-7067 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-6477 TCGA-CR-6478 
       14.96        16.70        11.77        54.64        16.90         6.02 
TCGA-CR-6491 TCGA-CR-7369 TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7388 TCGA-CR-7399 
       11.51        35.84        19.92        17.13        27.02         5.92 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5441 TCGA-CV-5979 TCGA-CV-6935 TCGA-CV-6936 
      135.29        17.16        87.55        43.23         9.70         5.46 
TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6956 TCGA-CV-7095 TCGA-CV-7097 
       26.43        12.03        15.06         7.13        18.81        12.66 
TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7247 TCGA-CV-7414 TCGA-CV-7415 
        1.84        71.21        56.68        18.97         0.46        22.85 
TCGA-CV-7423 TCGA-CV-7432 TCGA-CV-7433 TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5625 
      100.54        84.49        19.73         5.00         5.03        34.78 
TCGA-DQ-7588 TCGA-DQ-7589 TCGA-F7-7848 TCGA-F7-8298 TCGA-HD-7753 
       14.04        18.90         1.15         0.46         0.16 

$subtype2
TCGA-BA-4075 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4224 TCGA-CN-4723 TCGA-CN-4725 
        9.30        12.99         3.72         9.04        13.55        10.19 
TCGA-CN-4730 TCGA-CN-4737 TCGA-CQ-5329 TCGA-CQ-5332 TCGA-CQ-6220 TCGA-CR-7367 
       11.28         7.89        27.65        10.42        32.35        47.34 
TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7379 TCGA-CR-7390 TCGA-CV-5435 TCGA-CV-5444 
       24.95         0.99        34.06        29.82        47.28        64.73 
TCGA-CV-5976 TCGA-CV-6933 TCGA-CV-6948 TCGA-CV-6959 TCGA-CV-6962 TCGA-CV-7090 
       48.59        90.08        42.35         8.38         4.14       126.12 
TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7255 
      111.12         5.23        31.33        26.20        17.10         2.10 
TCGA-CV-7416 TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       25.02        14.86         3.48        16.60         6.38        21.99 
TCGA-D6-6516 TCGA-D6-6823 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-7592 
       10.68         7.82        37.78        16.96         9.83 

$subtype3
TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6869 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7871 
        9.07         6.12         8.02        17.59        23.61        14.04 
TCGA-BB-8601 TCGA-CN-5360 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6023 
       20.52        28.47         6.81         4.70         9.07         6.18 
TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-6221 
        7.36         2.73         3.91         3.29        48.16        32.88 
TCGA-CQ-6225 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7370 TCGA-CR-7371 
       13.25         7.66        47.18        39.12         3.42         3.06 
TCGA-CR-7402 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5978 TCGA-CV-6941 
       29.92       129.21       108.33        89.82         7.07        11.24 
TCGA-CV-6951 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7242 TCGA-CV-7254 TCGA-CV-7261 
       30.05        52.31        21.76        36.00        47.97        36.13 
TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7430 TCGA-CV-7435 
       58.06        35.54        25.94        34.09        16.27       142.49 
TCGA-CX-7082 TCGA-DQ-7595 TCGA-HD-7917 TCGA-HD-8314 
       10.39        10.65         1.02         1.45 

$subtype4
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BB-4217 
        6.25        27.78        57.90         5.88         7.96         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7863 TCGA-BB-7866 
       95.05         4.60        18.31        10.19        13.87        20.98 
TCGA-CN-4722 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
        6.31        17.16        12.99        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5369 TCGA-CN-5374 
       28.77         9.50         5.69        12.39        12.49         9.01 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
        5.23         1.48         4.41        39.68        21.50        38.89 
TCGA-CQ-5331 TCGA-CQ-5333 TCGA-CQ-6229 TCGA-CQ-7068 TCGA-CR-5249 TCGA-CR-6470 
       33.80        11.21        26.76        22.78        37.87        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       39.52        34.52        36.99        10.22        11.34        11.64 
TCGA-CR-6492 TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7389 TCGA-CR-7391 
       15.75        31.96        26.17        32.78        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7404 
       31.10        29.85        29.52        30.54         7.10        48.36 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5971 TCGA-CV-6436 TCGA-CV-6938 TCGA-CV-6943 
       76.47        84.39        17.75        24.43         4.70        19.79 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7183 TCGA-CV-7238 TCGA-CV-7250 TCGA-CV-7410 
       53.92        10.98       114.94        47.47        95.34       210.94 
TCGA-CV-7411 TCGA-CV-7425 TCGA-CV-7427 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 
       89.33        56.48       156.49        10.55        13.25         2.53 
TCGA-D6-6827 TCGA-DQ-5630 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
        4.18        15.68        21.73        11.84        12.13        12.10 
TCGA-H7-7774 TCGA-HD-7754 TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.82         0.99        22.75         4.01         3.72 

$subtype5
TCGA-BA-5558 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-6988 TCGA-CQ-5330 TCGA-CQ-6224 
       53.75         5.46        12.59         1.38        29.46        32.35 
TCGA-CR-5243 TCGA-CR-6474 TCGA-CR-6493 TCGA-CR-7398 TCGA-CV-5973 TCGA-CV-6441 
       84.23        18.51         9.27         5.13        57.07         5.88 
TCGA-CV-6937 TCGA-CV-6954 TCGA-CV-7104 TCGA-CV-7421 TCGA-CX-7086 TCGA-DQ-5631 
       20.52        65.82        12.89         0.07         7.76        18.02 
TCGA-HD-8224 TCGA-HD-8635 
        1.81         0.99 

$subtype6
TCGA-BA-5559 TCGA-CN-6996 TCGA-CN-6998 TCGA-CR-6467 TCGA-CV-5977 TCGA-CV-6003 
       57.44         3.75         1.51        58.42        33.11        40.96 
TCGA-CV-6433 TCGA-CV-7409 TCGA-CV-7428 TCGA-CV-7434 
       13.32        17.82        54.90         7.13 

$subtype7
TCGA-BB-7872 TCGA-CN-4726 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5370 TCGA-CN-5373 
       14.33         4.67        13.05         9.17         8.52        13.58 
TCGA-CN-6016 TCGA-CN-6022 TCGA-CQ-5326 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6223 
        6.61         6.61         2.93         4.21        28.60        34.75 
TCGA-CQ-6227 TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CQ-7065 TCGA-CQ-7069 TCGA-CR-5250 
        4.21        48.03        45.27        33.07        29.59        26.24 
TCGA-CR-6480 TCGA-CR-6488 TCGA-CR-7368 TCGA-CR-7373 TCGA-CR-7386 TCGA-CR-7401 
       11.90        12.46        40.90        29.23        47.01        35.41 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-6934 TCGA-CV-6939 
       19.20        17.95        17.06        13.35         2.14        21.86 
TCGA-CV-6942 TCGA-CV-6952 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7099 
      126.08         6.08        28.31         2.50        64.80         7.99 
TCGA-CV-7100 TCGA-CV-7180 TCGA-CV-7236 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7263 
        9.01        10.75         4.73         4.96        11.87        18.41 
TCGA-CV-7413 TCGA-CX-7219 TCGA-D6-6517 TCGA-F7-8489 TCGA-H7-8501 TCGA-HD-7229 
        9.67        27.22         8.22         0.43         1.87         0.07 
TCGA-IQ-7630 
        5.26 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
    0.16     0.99     1.02     0.82     0.07     1.51     0.07 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  135.29   126.12   142.49   210.94    84.23    58.42   126.08 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  12.660   16.600   16.930   17.455   12.740   25.465   12.460 
[1] "0.2 - 135.3 (12.7)" "1.0 - 126.1 (16.6)" "1.0 - 142.5 (16.9)"
[4] "0.8 - 210.9 (17.5)" "0.1 - 84.2 (12.7)"  "1.5 - 58.4 (25.5)" 
[7] "0.1 - 126.1 (12.5)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype5" "subtype6" "subtype1" "subtype3" "subtype1" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
 [31] "subtype3" "subtype4" "subtype1" "subtype3" "subtype7" "subtype1"
 [37] "subtype3" "subtype4" "subtype2" "subtype2" "subtype7" "subtype1"
 [43] "subtype1" "subtype5" "subtype2" "subtype5" "subtype4" "subtype1"
 [49] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype7" "subtype7" "subtype4" "subtype4" "subtype4" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [67] "subtype7" "subtype7" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype7" "subtype4" "subtype4" "subtype4" "subtype1"
 [79] "subtype3" "subtype7" "subtype3" "subtype3" "subtype5" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype6" "subtype3" "subtype6"
 [91] "subtype3" "subtype4" "subtype4" "subtype7" "subtype4" "subtype2"
 [97] "subtype5" "subtype4" "subtype2" "subtype4" "subtype7" "subtype7"
[103] "subtype2" "subtype3" "subtype7" "subtype5" "subtype3" "subtype7"
[109] "subtype1" "subtype4" "subtype7" "subtype7" "subtype7" "subtype1"
[115] "subtype4" "subtype7" "subtype5" "subtype1" "subtype1" "subtype4"
[121] "subtype7" "subtype6" "subtype4" "subtype4" "subtype4" "subtype4"
[127] "subtype5" "subtype1" "subtype1" "subtype7" "subtype4" "subtype4"
[133] "subtype4" "subtype3" "subtype7" "subtype1" "subtype4" "subtype5"
[139] "subtype3" "subtype3" "subtype2" "subtype7" "subtype1" "subtype3"
[145] "subtype3" "subtype2" "subtype7" "subtype2" "subtype4" "subtype2"
[151] "subtype1" "subtype4" "subtype1" "subtype4" "subtype7" "subtype1"
[157] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype5" "subtype1" "subtype7" "subtype3"
[169] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype7" "subtype7" "subtype3" "subtype1" "subtype4" "subtype4"
[181] "subtype2" "subtype7" "subtype7" "subtype4" "subtype5" "subtype2"
[187] "subtype6" "subtype3" "subtype1" "subtype6" "subtype6" "subtype4"
[193] "subtype5" "subtype2" "subtype7" "subtype1" "subtype1" "subtype5"
[199] "subtype4" "subtype7" "subtype1" "subtype3" "subtype7" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype7" "subtype4"
[211] "subtype5" "subtype4" "subtype1" "subtype2" "subtype7" "subtype7"
[217] "subtype2" "subtype7" "subtype2" "subtype2" "subtype1" "subtype1"
[223] "subtype7" "subtype7" "subtype2" "subtype1" "subtype3" "subtype5"
[229] "subtype3" "subtype1" "subtype7" "subtype4" "subtype1" "subtype7"
[235] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[241] "subtype4" "subtype7" "subtype7" "subtype3" "subtype2" "subtype3"
[247] "subtype7" "subtype3" "subtype3" "subtype6" "subtype4" "subtype4"
[253] "subtype7" "subtype1" "subtype1" "subtype2" "subtype3" "subtype5"
[259] "subtype3" "subtype1" "subtype2" "subtype4" "subtype4" "subtype6"
[265] "subtype2" "subtype3" "subtype1" "subtype1" "subtype6" "subtype3"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype5"
[277] "subtype7" "subtype4" "subtype2" "subtype7" "subtype2" "subtype4"
[283] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[289] "subtype4" "subtype5" "subtype1" "subtype1" "subtype4" "subtype4"
[295] "subtype2" "subtype4" "subtype4" "subtype3" "subtype1" "subtype1"
[301] "subtype7" "subtype4" "subtype7" "subtype7" "subtype1" "subtype4"
[307] "subtype3" "subtype5" "subtype3" "subtype4" "subtype5" "subtype4"
[313] "subtype7" "subtype4" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype5" "subtype6" "subtype1" "subtype3" "subtype1" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
 [31] "subtype3" "subtype4" "subtype1" "subtype3" "subtype7" "subtype1"
 [37] "subtype3" "subtype4" "subtype2" "subtype2" "subtype7" "subtype1"
 [43] "subtype1" "subtype5" "subtype2" "subtype5" "subtype4" "subtype1"
 [49] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype7" "subtype7" "subtype4" "subtype4" "subtype4" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [67] "subtype7" "subtype7" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype7" "subtype4" "subtype4" "subtype4" "subtype1"
 [79] "subtype3" "subtype7" "subtype3" "subtype3" "subtype5" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype6" "subtype3" "subtype6"
 [91] "subtype3" "subtype4" "subtype4" "subtype7" "subtype4" "subtype2"
 [97] "subtype5" "subtype4" "subtype2" "subtype4" "subtype7" "subtype7"
[103] "subtype2" "subtype3" "subtype7" "subtype5" "subtype3" "subtype7"
[109] "subtype1" "subtype4" "subtype7" "subtype7" "subtype7" "subtype1"
[115] "subtype4" "subtype7" "subtype5" "subtype1" "subtype1" "subtype4"
[121] "subtype7" "subtype6" "subtype4" "subtype4" "subtype4" "subtype4"
[127] "subtype5" "subtype1" "subtype1" "subtype7" "subtype4" "subtype4"
[133] "subtype4" "subtype3" "subtype7" "subtype1" "subtype4" "subtype5"
[139] "subtype3" "subtype3" "subtype2" "subtype7" "subtype1" "subtype3"
[145] "subtype3" "subtype2" "subtype7" "subtype2" "subtype4" "subtype2"
[151] "subtype1" "subtype4" "subtype1" "subtype4" "subtype7" "subtype1"
[157] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype5" "subtype1" "subtype7" "subtype3"
[169] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype7" "subtype7" "subtype3" "subtype1" "subtype4" "subtype4"
[181] "subtype2" "subtype7" "subtype7" "subtype4" "subtype5" "subtype2"
[187] "subtype6" "subtype3" "subtype1" "subtype6" "subtype6" "subtype4"
[193] "subtype5" "subtype2" "subtype7" "subtype1" "subtype1" "subtype5"
[199] "subtype4" "subtype7" "subtype1" "subtype3" "subtype7" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype7" "subtype4"
[211] "subtype5" "subtype4" "subtype1" "subtype2" "subtype7" "subtype7"
[217] "subtype2" "subtype7" "subtype2" "subtype2" "subtype1" "subtype1"
[223] "subtype7" "subtype7" "subtype2" "subtype1" "subtype3" "subtype5"
[229] "subtype3" "subtype1" "subtype7" "subtype4" "subtype1" "subtype7"
[235] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[241] "subtype4" "subtype7" "subtype7" "subtype3" "subtype2" "subtype3"
[247] "subtype7" "subtype3" "subtype3" "subtype6" "subtype4" "subtype4"
[253] "subtype7" "subtype1" "subtype1" "subtype2" "subtype3" "subtype5"
[259] "subtype3" "subtype1" "subtype2" "subtype4" "subtype4" "subtype6"
[265] "subtype2" "subtype3" "subtype1" "subtype1" "subtype6" "subtype3"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype5"
[277] "subtype7" "subtype4" "subtype2" "subtype7" "subtype2" "subtype4"
[283] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[289] "subtype4" "subtype5" "subtype1" "subtype1" "subtype4" "subtype4"
[295] "subtype2" "subtype4" "subtype4" "subtype3" "subtype1" "subtype1"
[301] "subtype7" "subtype4" "subtype7" "subtype7" "subtype1" "subtype4"
[307] "subtype3" "subtype5" "subtype3" "subtype4" "subtype5" "subtype4"
[313] "subtype7" "subtype4" "subtype4"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
  [7] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
 [13] "subtype5" "subtype6" "subtype1" "subtype3" "subtype1" "subtype1"
 [19] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype2"
 [25] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
 [31] "subtype3" "subtype4" "subtype1" "subtype3" "subtype7" "subtype1"
 [37] "subtype3" "subtype4" "subtype2" "subtype2" "subtype7" "subtype1"
 [43] "subtype1" "subtype5" "subtype2" "subtype5" "subtype4" "subtype1"
 [49] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [55] "subtype7" "subtype7" "subtype4" "subtype4" "subtype4" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [67] "subtype7" "subtype7" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype7" "subtype4" "subtype4" "subtype4" "subtype1"
 [79] "subtype3" "subtype7" "subtype3" "subtype3" "subtype5" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype6" "subtype3" "subtype6"
 [91] "subtype3" "subtype4" "subtype4" "subtype7" "subtype4" "subtype2"
 [97] "subtype5" "subtype4" "subtype2" "subtype4" "subtype7" "subtype7"
[103] "subtype2" "subtype3" "subtype7" "subtype5" "subtype3" "subtype7"
[109] "subtype1" "subtype4" "subtype7" "subtype7" "subtype7" "subtype1"
[115] "subtype4" "subtype7" "subtype5" "subtype1" "subtype1" "subtype4"
[121] "subtype7" "subtype6" "subtype4" "subtype4" "subtype4" "subtype4"
[127] "subtype5" "subtype1" "subtype1" "subtype7" "subtype4" "subtype4"
[133] "subtype4" "subtype3" "subtype7" "subtype1" "subtype4" "subtype5"
[139] "subtype3" "subtype3" "subtype2" "subtype7" "subtype1" "subtype3"
[145] "subtype3" "subtype2" "subtype7" "subtype2" "subtype4" "subtype2"
[151] "subtype1" "subtype4" "subtype1" "subtype4" "subtype7" "subtype1"
[157] "subtype4" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
[163] "subtype4" "subtype4" "subtype5" "subtype1" "subtype7" "subtype3"
[169] "subtype4" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[175] "subtype7" "subtype7" "subtype3" "subtype1" "subtype4" "subtype4"
[181] "subtype2" "subtype7" "subtype7" "subtype4" "subtype5" "subtype2"
[187] "subtype6" "subtype3" "subtype1" "subtype6" "subtype6" "subtype4"
[193] "subtype5" "subtype2" "subtype7" "subtype1" "subtype1" "subtype5"
[199] "subtype4" "subtype7" "subtype1" "subtype3" "subtype7" "subtype4"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype7" "subtype4"
[211] "subtype5" "subtype4" "subtype1" "subtype2" "subtype7" "subtype7"
[217] "subtype2" "subtype7" "subtype2" "subtype2" "subtype1" "subtype1"
[223] "subtype7" "subtype7" "subtype2" "subtype1" "subtype3" "subtype5"
[229] "subtype3" "subtype1" "subtype7" "subtype4" "subtype1" "subtype7"
[235] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[241] "subtype4" "subtype7" "subtype7" "subtype3" "subtype2" "subtype3"
[247] "subtype7" "subtype3" "subtype3" "subtype6" "subtype4" "subtype4"
[253] "subtype7" "subtype1" "subtype1" "subtype2" "subtype3" "subtype5"
[259] "subtype3" "subtype1" "subtype2" "subtype4" "subtype4" "subtype6"
[265] "subtype2" "subtype3" "subtype1" "subtype1" "subtype6" "subtype3"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype5"
[277] "subtype7" "subtype4" "subtype2" "subtype7" "subtype2" "subtype4"
[283] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[289] "subtype4" "subtype5" "subtype1" "subtype1" "subtype4" "subtype4"
[295] "subtype2" "subtype4" "subtype4" "subtype3" "subtype1" "subtype1"
[301] "subtype7" "subtype4" "subtype7" "subtype7" "subtype1" "subtype4"
[307] "subtype3" "subtype5" "subtype3" "subtype4" "subtype5" "subtype4"
[313] "subtype7" "subtype4" "subtype4"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1 17 49
  subtype2  9 32
  subtype3 11 35
  subtype4 30 54
  subtype5  6 15
  subtype6  2  8
  subtype7 15 36
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   49
  subtype2    9   32
  subtype3   11   35
  subtype4   30   54
  subtype5    6   15
  subtype6    2    8
  subtype7   15   36
          vv
clus       T1 T2 T3 T4
  subtype1  6 11 11 26
  subtype2  4 10  6 16
  subtype3  2 10 14 14
  subtype4 11 25 12 22
  subtype5  1  7  6  4
  subtype6  0  3  3  3
  subtype7  4 13 13 19
D1V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 14  5 29  2
  subtype2 14  5  9  1
  subtype3 15  3 17  1
  subtype4 38  8 14  0
  subtype5  5  3  9  0
  subtype6  1  3  4  1
  subtype7 18  9 17  0
D1V5, multiclass
D1V6, binary
          cls
clus        0  1
  subtype1  9  2
  subtype2  5  0
  subtype3  7  1
  subtype4 22  1
  subtype5  1  1
  subtype6  1  0
  subtype7 12  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    2
  subtype2    5    0
  subtype3    7    1
  subtype4   22    1
  subtype5    1    1
  subtype6    1    0
  subtype7   12    1
          vv
clus        I II III IV
  subtype1  5  5   5 39
  subtype2  4  7   6 19
  subtype3  2  6   7 24
  subtype4  5 16  15 30
  subtype5  0  2   5 11
  subtype6  0  1   2  6
  subtype7  4 12   5 28
D1V7, multiclass
D1V8, binary
          cls
clus        0  1
  subtype1 19 47
  subtype2  9 32
  subtype3 12 34
  subtype4 21 63
  subtype5  5 16
  subtype6  2  8
  subtype7  8 43
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   47
  subtype2    9   32
  subtype3   12   34
  subtype4   21   63
  subtype5    5   16
  subtype6    2    8
  subtype7    8   43
D1V9, continuous
D1V10, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          16
  subtype2                                          13
  subtype3                                          16
  subtype4                                          18
  subtype5                                           7
  subtype6                                           3
  subtype7                                          10
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     10             33
  subtype2                                      1             11
  subtype3                                      8             18
  subtype4                                     21             20
  subtype5                                      4              4
  subtype6                                      0              3
  subtype7                                     13             13
          vv
clus       LIFELONG NON-SMOKER
  subtype1                   5
  subtype2                  14
  subtype3                   2
  subtype4                  24
  subtype5                   6
  subtype6                   4
  subtype7                  11
D1V11, multiclass
D1V12, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 28 15
  subtype2 28 19
  subtype3 19 20
  subtype4 36  8
  subtype5 28 30
  subtype6 32 19
  subtype7  4  1
  subtype8 10  9
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
      43       47       39       44       58       51        5       19 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
      15       19       20        8       30       19        1        9 
$subtype1
TCGA-BA-4074 TCGA-BA-5555 TCGA-BA-6869 TCGA-BB-7864 TCGA-BB-7870 TCGA-CN-4727 
       15.16         6.12         8.02        23.61        37.87         6.38 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5356 
       11.28        12.59         7.89        11.44        26.63         9.50 
TCGA-CN-5360 TCGA-CN-6988 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-5247 TCGA-CR-7364 
       28.47         1.38        13.25        14.96        11.77        47.18 
TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5441 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6954 
        5.13        29.92        87.55        11.24        15.06        65.82 
TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7091 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7250 
        7.13        28.31       111.12        36.00        26.20        95.34 
TCGA-CV-7253 TCGA-CV-7263 TCGA-CV-7409 TCGA-CV-7421 TCGA-CV-7428 TCGA-CV-7435 
       11.87        18.41        17.82         0.07        54.90       142.49 
TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6823 TCGA-DQ-7595 TCGA-F7-7848 TCGA-HD-7917 
       21.99         7.76         7.82        10.65         1.15         1.02 
TCGA-IQ-7631 
        4.01 

$subtype2
TCGA-BA-4075 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4224 TCGA-BB-4227 TCGA-CN-4725 
        9.30        12.99         3.72         9.04         4.37        10.19 
TCGA-CN-4736 TCGA-CN-4742 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6020 TCGA-CN-6996 
       12.99        13.05         8.52        13.58         3.19         3.75 
TCGA-CN-6998 TCGA-CQ-5329 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-7065 TCGA-CQ-7067 
        1.51        27.65        32.35        34.75        33.07        16.70 
TCGA-CR-6477 TCGA-CR-6493 TCGA-CR-7372 TCGA-CR-7379 TCGA-CR-7401 TCGA-CV-5439 
       16.90         9.27        24.95        34.06        35.41        17.95 
TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6959 
       13.35        57.07        48.59        43.23        40.96         8.38 
TCGA-CV-7090 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7243 
      126.12         1.84        71.21        10.75       114.94        31.33 
TCGA-CV-7247 TCGA-CV-7255 TCGA-CV-7411 TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7438 
       18.97         2.10        89.33        25.02       100.54         6.38 
TCGA-D6-6517 TCGA-DQ-5624 TCGA-DQ-7592 TCGA-HD-7753 TCGA-IQ-7630 
        8.22        37.78         9.83         0.16         5.26 

$subtype3
TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5558 TCGA-BA-6870 
       13.64         8.15         6.25        27.78        53.75        14.79 
TCGA-BB-7863 TCGA-CN-4722 TCGA-CN-4734 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-6011 
       13.87         6.31         7.43         8.28        11.54         7.50 
TCGA-CN-6995 TCGA-CQ-5326 TCGA-CQ-5334 TCGA-CQ-7068 TCGA-CR-6484 TCGA-CR-7365 
        3.68         2.93         4.21        22.78        11.64        39.12 
TCGA-CR-7373 TCGA-CR-7380 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-6942 TCGA-CV-6952 
       29.23        19.92        64.73        17.06       126.08         6.08 
TCGA-CV-6955 TCGA-CV-7097 TCGA-CV-7104 TCGA-CV-7252 TCGA-CV-7413 TCGA-CV-7415 
       10.98        12.66        12.89         4.96         9.67        22.85 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7434 TCGA-CX-7219 TCGA-D6-6825 TCGA-D6-6826 
       56.48       156.49         7.13        27.22         5.00         5.03 
TCGA-DQ-5625 TCGA-DQ-7588 TCGA-HD-7229 
       34.78        14.04         0.07 

$subtype4
TCGA-BA-4077 TCGA-BA-5153 TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 
       37.28        57.90        57.44         2.07        95.05         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7866 TCGA-CN-4741 TCGA-CN-5374 TCGA-CN-6013 
       18.31        10.19        20.98        28.77         9.01         5.06 
TCGA-CQ-5323 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       48.16        84.23        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-6481 
       50.01        39.52        34.52        36.99        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7385 TCGA-CR-7399 
       11.34         7.66        40.90        35.84        32.78         5.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-6433 TCGA-CV-6441 
       48.36        17.16        76.47        84.39        13.32         5.88 
TCGA-CV-6939 TCGA-CV-7100 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       21.86         9.01        21.73        11.84        12.13        12.10 
TCGA-HD-7754 TCGA-HL-7533 
        0.82        22.75 

$subtype5
TCGA-BA-4078 TCGA-BA-7269 TCGA-BB-7862 TCGA-BB-7871 TCGA-CN-4723 TCGA-CN-4735 
        9.07         7.76        17.59        14.04        13.55        12.13 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6024 
        6.81         4.70         4.41         9.07         6.18         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5332 TCGA-CQ-6221 
        5.82         2.73         3.91         3.29        10.42        32.88 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
        3.42         3.06         0.99        27.02        12.89        29.82 
TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-5978 
      135.29       129.21       108.33        47.28        89.82         7.07 
TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-6948 
       90.08         9.70        20.52        26.43        12.03        42.35 
TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7235 
       30.05         4.14         5.23        52.31        21.76        56.68 
TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7414 
       17.10        47.97        36.13        58.06        35.54         0.46 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7437 
       25.94        34.09        14.86         3.48        16.27        16.60 
TCGA-CX-7082 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-7589 
       10.39         4.18        16.96        18.90 

$subtype6
TCGA-BA-5556 TCGA-BA-5557 TCGA-BB-4217 TCGA-BB-7872 TCGA-CN-4728 TCGA-CN-4733 
        5.88         7.96         6.12        14.33        10.68        17.16 
TCGA-CN-4738 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       14.33         5.69        12.39        11.84        11.57        12.49 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6022 TCGA-CQ-5325 TCGA-CQ-5331 
        6.61         5.23         1.48         6.61        21.50        33.80 
TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CR-6474 
       15.72        38.14        32.35         4.21        26.76        18.51 
TCGA-CR-6478 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7383 
        6.02        12.46        15.75        31.96        26.17        17.13 
TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       47.01        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CV-5971 TCGA-CV-6938 TCGA-CV-6943 TCGA-CV-6961 TCGA-CV-7089 
        7.10        17.75         4.70        19.79         2.50        64.80 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7410 TCGA-CV-7433 TCGA-CX-7085 TCGA-D6-6515 
        4.73        47.47       210.94        19.73        10.55        13.25 
TCGA-D6-6824 TCGA-DQ-5630 TCGA-IQ-7632 
        2.53        15.68         3.72 

$subtype7
TCGA-BA-6868 TCGA-CN-5361 TCGA-CQ-6218 TCGA-CV-5436 TCGA-D6-6516 
        5.00         6.35        28.60        19.20        10.68 

$subtype8
TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-5355 TCGA-CN-5364 TCGA-CQ-5324 TCGA-CQ-5327 
        4.67         5.46         9.17        16.21        39.68        38.89 
TCGA-CQ-5330 TCGA-CR-6491 TCGA-CR-7367 TCGA-CV-5977 TCGA-CV-6436 TCGA-CV-6934 
       29.46        11.51        47.34        33.11        24.43         2.14 
TCGA-CV-6936 TCGA-CV-6953 TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7432 TCGA-DQ-5631 
        5.46        53.92        18.81         7.99        84.49        18.02 
TCGA-H7-7774 
        0.99 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
    0.07     0.16     0.07     0.82     0.46     1.48     5.00     0.99 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
  142.49   126.12   156.49    95.05   135.29   210.94    28.60    84.49 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 subtype8 
  13.250   13.580   12.660   22.305   14.450   14.330   10.680   18.020 
[1] "0.1 - 142.5 (13.2)" "0.2 - 126.1 (13.6)" "0.1 - 156.5 (12.7)"
[4] "0.8 - 95.0 (22.3)"  "0.5 - 135.3 (14.4)" "1.5 - 210.9 (14.3)"
[7] "5.0 - 28.6 (10.7)"  "1.0 - 84.5 (18.0)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype3"
  [7] "subtype3" "subtype3" "subtype4" "subtype1" "subtype6" "subtype6"
 [13] "subtype3" "subtype4" "subtype7" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype5" "subtype6" "subtype4" "subtype2"
 [25] "subtype4" "subtype2" "subtype4" "subtype4" "subtype5" "subtype3"
 [31] "subtype1" "subtype4" "subtype1" "subtype5" "subtype6" "subtype3"
 [37] "subtype5" "subtype2" "subtype8" "subtype1" "subtype6" "subtype8"
 [43] "subtype1" "subtype1" "subtype6" "subtype3" "subtype5" "subtype2"
 [49] "subtype1" "subtype6" "subtype1" "subtype1" "subtype4" "subtype2"
 [55] "subtype8" "subtype1" "subtype6" "subtype6" "subtype1" "subtype7"
 [61] "subtype3" "subtype8" "subtype3" "subtype6" "subtype6" "subtype6"
 [67] "subtype2" "subtype2" "subtype4" "subtype5" "subtype3" "subtype5"
 [73] "subtype4" "subtype6" "subtype6" "subtype6" "subtype5" "subtype2"
 [79] "subtype5" "subtype6" "subtype5" "subtype5" "subtype1" "subtype5"
 [85] "subtype5" "subtype5" "subtype3" "subtype2" "subtype5" "subtype2"
 [91] "subtype4" "subtype8" "subtype6" "subtype3" "subtype8" "subtype2"
 [97] "subtype8" "subtype6" "subtype5" "subtype3" "subtype7" "subtype6"
[103] "subtype2" "subtype5" "subtype6" "subtype2" "subtype6" "subtype1"
[109] "subtype6" "subtype1" "subtype6" "subtype2" "subtype2" "subtype3"
[115] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype4" "subtype4" "subtype6" "subtype2"
[127] "subtype6" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[133] "subtype6" "subtype8" "subtype6" "subtype2" "subtype1" "subtype3"
[139] "subtype8" "subtype4" "subtype4" "subtype5" "subtype5" "subtype2"
[145] "subtype3" "subtype5" "subtype6" "subtype2" "subtype3" "subtype6"
[151] "subtype6" "subtype4" "subtype6" "subtype5" "subtype5" "subtype5"
[157] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
[163] "subtype1" "subtype4" "subtype2" "subtype1" "subtype4" "subtype5"
[169] "subtype4" "subtype5" "subtype5" "subtype5" "subtype7" "subtype2"
[175] "subtype5" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[181] "subtype2" "subtype6" "subtype2" "subtype2" "subtype8" "subtype5"
[187] "subtype2" "subtype2" "subtype4" "subtype8" "subtype4" "subtype5"
[193] "subtype8" "subtype5" "subtype8" "subtype5" "subtype6" "subtype4"
[199] "subtype5" "subtype1" "subtype3" "subtype6" "subtype5" "subtype5"
[205] "subtype1" "subtype5" "subtype3" "subtype8" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
[217] "subtype2" "subtype1" "subtype8" "subtype3" "subtype8" "subtype4"
[223] "subtype5" "subtype2" "subtype5" "subtype3" "subtype5" "subtype2"
[229] "subtype2" "subtype2" "subtype5" "subtype6" "subtype6" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype5" "subtype1" "subtype3"
[241] "subtype1" "subtype5" "subtype2" "subtype5" "subtype1" "subtype5"
[247] "subtype5" "subtype1" "subtype6" "subtype2" "subtype3" "subtype5"
[253] "subtype3" "subtype2" "subtype5" "subtype1" "subtype5" "subtype2"
[259] "subtype5" "subtype3" "subtype3" "subtype1" "subtype5" "subtype5"
[265] "subtype8" "subtype6" "subtype3" "subtype1" "subtype5" "subtype2"
[271] "subtype1" "subtype5" "subtype6" "subtype1" "subtype3" "subtype6"
[277] "subtype7" "subtype2" "subtype1" "subtype6" "subtype3" "subtype3"
[283] "subtype5" "subtype2" "subtype3" "subtype5" "subtype6" "subtype8"
[289] "subtype3" "subtype5" "subtype4" "subtype4" "subtype2" "subtype4"
[295] "subtype4" "subtype1" "subtype1" "subtype8" "subtype3" "subtype2"
[301] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype6"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype3"
  [7] "subtype3" "subtype3" "subtype4" "subtype1" "subtype6" "subtype6"
 [13] "subtype3" "subtype4" "subtype7" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype5" "subtype6" "subtype4" "subtype2"
 [25] "subtype4" "subtype2" "subtype4" "subtype4" "subtype5" "subtype3"
 [31] "subtype1" "subtype4" "subtype1" "subtype5" "subtype6" "subtype3"
 [37] "subtype5" "subtype2" "subtype8" "subtype1" "subtype6" "subtype8"
 [43] "subtype1" "subtype1" "subtype6" "subtype3" "subtype5" "subtype2"
 [49] "subtype1" "subtype6" "subtype1" "subtype1" "subtype4" "subtype2"
 [55] "subtype8" "subtype1" "subtype6" "subtype6" "subtype1" "subtype7"
 [61] "subtype3" "subtype8" "subtype3" "subtype6" "subtype6" "subtype6"
 [67] "subtype2" "subtype2" "subtype4" "subtype5" "subtype3" "subtype5"
 [73] "subtype4" "subtype6" "subtype6" "subtype6" "subtype5" "subtype2"
 [79] "subtype5" "subtype6" "subtype5" "subtype5" "subtype1" "subtype5"
 [85] "subtype5" "subtype5" "subtype3" "subtype2" "subtype5" "subtype2"
 [91] "subtype4" "subtype8" "subtype6" "subtype3" "subtype8" "subtype2"
 [97] "subtype8" "subtype6" "subtype5" "subtype3" "subtype7" "subtype6"
[103] "subtype2" "subtype5" "subtype6" "subtype2" "subtype6" "subtype1"
[109] "subtype6" "subtype1" "subtype6" "subtype2" "subtype2" "subtype3"
[115] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype4" "subtype4" "subtype6" "subtype2"
[127] "subtype6" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[133] "subtype6" "subtype8" "subtype6" "subtype2" "subtype1" "subtype3"
[139] "subtype8" "subtype4" "subtype4" "subtype5" "subtype5" "subtype2"
[145] "subtype3" "subtype5" "subtype6" "subtype2" "subtype3" "subtype6"
[151] "subtype6" "subtype4" "subtype6" "subtype5" "subtype5" "subtype5"
[157] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
[163] "subtype1" "subtype4" "subtype2" "subtype1" "subtype4" "subtype5"
[169] "subtype4" "subtype5" "subtype5" "subtype5" "subtype7" "subtype2"
[175] "subtype5" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[181] "subtype2" "subtype6" "subtype2" "subtype2" "subtype8" "subtype5"
[187] "subtype2" "subtype2" "subtype4" "subtype8" "subtype4" "subtype5"
[193] "subtype8" "subtype5" "subtype8" "subtype5" "subtype6" "subtype4"
[199] "subtype5" "subtype1" "subtype3" "subtype6" "subtype5" "subtype5"
[205] "subtype1" "subtype5" "subtype3" "subtype8" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
[217] "subtype2" "subtype1" "subtype8" "subtype3" "subtype8" "subtype4"
[223] "subtype5" "subtype2" "subtype5" "subtype3" "subtype5" "subtype2"
[229] "subtype2" "subtype2" "subtype5" "subtype6" "subtype6" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype5" "subtype1" "subtype3"
[241] "subtype1" "subtype5" "subtype2" "subtype5" "subtype1" "subtype5"
[247] "subtype5" "subtype1" "subtype6" "subtype2" "subtype3" "subtype5"
[253] "subtype3" "subtype2" "subtype5" "subtype1" "subtype5" "subtype2"
[259] "subtype5" "subtype3" "subtype3" "subtype1" "subtype5" "subtype5"
[265] "subtype8" "subtype6" "subtype3" "subtype1" "subtype5" "subtype2"
[271] "subtype1" "subtype5" "subtype6" "subtype1" "subtype3" "subtype6"
[277] "subtype7" "subtype2" "subtype1" "subtype6" "subtype3" "subtype3"
[283] "subtype5" "subtype2" "subtype3" "subtype5" "subtype6" "subtype8"
[289] "subtype3" "subtype5" "subtype4" "subtype4" "subtype2" "subtype4"
[295] "subtype4" "subtype1" "subtype1" "subtype8" "subtype3" "subtype2"
[301] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype6"
  [1] "subtype1" "subtype2" "subtype3" "subtype4" "subtype5" "subtype3"
  [7] "subtype3" "subtype3" "subtype4" "subtype1" "subtype6" "subtype6"
 [13] "subtype3" "subtype4" "subtype7" "subtype1" "subtype3" "subtype4"
 [19] "subtype2" "subtype2" "subtype5" "subtype6" "subtype4" "subtype2"
 [25] "subtype4" "subtype2" "subtype4" "subtype4" "subtype5" "subtype3"
 [31] "subtype1" "subtype4" "subtype1" "subtype5" "subtype6" "subtype3"
 [37] "subtype5" "subtype2" "subtype8" "subtype1" "subtype6" "subtype8"
 [43] "subtype1" "subtype1" "subtype6" "subtype3" "subtype5" "subtype2"
 [49] "subtype1" "subtype6" "subtype1" "subtype1" "subtype4" "subtype2"
 [55] "subtype8" "subtype1" "subtype6" "subtype6" "subtype1" "subtype7"
 [61] "subtype3" "subtype8" "subtype3" "subtype6" "subtype6" "subtype6"
 [67] "subtype2" "subtype2" "subtype4" "subtype5" "subtype3" "subtype5"
 [73] "subtype4" "subtype6" "subtype6" "subtype6" "subtype5" "subtype2"
 [79] "subtype5" "subtype6" "subtype5" "subtype5" "subtype1" "subtype5"
 [85] "subtype5" "subtype5" "subtype3" "subtype2" "subtype5" "subtype2"
 [91] "subtype4" "subtype8" "subtype6" "subtype3" "subtype8" "subtype2"
 [97] "subtype8" "subtype6" "subtype5" "subtype3" "subtype7" "subtype6"
[103] "subtype2" "subtype5" "subtype6" "subtype2" "subtype6" "subtype1"
[109] "subtype6" "subtype1" "subtype6" "subtype2" "subtype2" "subtype3"
[115] "subtype4" "subtype1" "subtype4" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype4" "subtype4" "subtype4" "subtype6" "subtype2"
[127] "subtype6" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[133] "subtype6" "subtype8" "subtype6" "subtype2" "subtype1" "subtype3"
[139] "subtype8" "subtype4" "subtype4" "subtype5" "subtype5" "subtype2"
[145] "subtype3" "subtype5" "subtype6" "subtype2" "subtype3" "subtype6"
[151] "subtype6" "subtype4" "subtype6" "subtype5" "subtype5" "subtype5"
[157] "subtype6" "subtype6" "subtype6" "subtype6" "subtype6" "subtype6"
[163] "subtype1" "subtype4" "subtype2" "subtype1" "subtype4" "subtype5"
[169] "subtype4" "subtype5" "subtype5" "subtype5" "subtype7" "subtype2"
[175] "subtype5" "subtype1" "subtype4" "subtype4" "subtype3" "subtype3"
[181] "subtype2" "subtype6" "subtype2" "subtype2" "subtype8" "subtype5"
[187] "subtype2" "subtype2" "subtype4" "subtype8" "subtype4" "subtype5"
[193] "subtype8" "subtype5" "subtype8" "subtype5" "subtype6" "subtype4"
[199] "subtype5" "subtype1" "subtype3" "subtype6" "subtype5" "subtype5"
[205] "subtype1" "subtype5" "subtype3" "subtype8" "subtype1" "subtype3"
[211] "subtype1" "subtype2" "subtype1" "subtype6" "subtype5" "subtype6"
[217] "subtype2" "subtype1" "subtype8" "subtype3" "subtype8" "subtype4"
[223] "subtype5" "subtype2" "subtype5" "subtype3" "subtype5" "subtype2"
[229] "subtype2" "subtype2" "subtype5" "subtype6" "subtype6" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype5" "subtype1" "subtype3"
[241] "subtype1" "subtype5" "subtype2" "subtype5" "subtype1" "subtype5"
[247] "subtype5" "subtype1" "subtype6" "subtype2" "subtype3" "subtype5"
[253] "subtype3" "subtype2" "subtype5" "subtype1" "subtype5" "subtype2"
[259] "subtype5" "subtype3" "subtype3" "subtype1" "subtype5" "subtype5"
[265] "subtype8" "subtype6" "subtype3" "subtype1" "subtype5" "subtype2"
[271] "subtype1" "subtype5" "subtype6" "subtype1" "subtype3" "subtype6"
[277] "subtype7" "subtype2" "subtype1" "subtype6" "subtype3" "subtype3"
[283] "subtype5" "subtype2" "subtype3" "subtype5" "subtype6" "subtype8"
[289] "subtype3" "subtype5" "subtype4" "subtype4" "subtype2" "subtype4"
[295] "subtype4" "subtype1" "subtype1" "subtype8" "subtype3" "subtype2"
[301] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype6"
D2V2, continuous
D2V3, binary
          cls
clus        0  1
  subtype1  7 36
  subtype2 17 30
  subtype3 15 25
  subtype4  5 39
  subtype5 15 43
  subtype6 18 35
  subtype7  1  4
  subtype8  7 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7   36
  subtype2   17   30
  subtype3   15   25
  subtype4    5   39
  subtype5   15   43
  subtype6   18   35
  subtype7    1    4
  subtype8    7   12
          vv
clus       T1 T2 T3 T4
  subtype1  2 10 11 17
  subtype2  7 14 12 10
  subtype3  1 10  5 19
  subtype4  4  9  5  8
  subtype5  1 13 13 23
  subtype6  8 18  8 17
  subtype7  1  0  2  1
  subtype8  0  4  7  7
D2V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 21  4 11  1
  subtype2 19  4 14  0
  subtype3 15  4  9  2
  subtype4  9  5  9  0
  subtype5 12  5 24  2
  subtype6 18  8 22  0
  subtype7  1  0  3  0
  subtype8  6  2  8  0
D2V5, multiclass
D2V6, binary
          cls
clus        0
  subtype1  5
  subtype2  6
  subtype3  5
  subtype4 12
  subtype5  4
  subtype6 19
  subtype7  1
  subtype8  2
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus        I II III IV
  subtype1  1  7   8 24
  subtype2  6  9  10 17
  subtype3  1  8   2 24
  subtype4  2  3   6 13
  subtype5  1  8   6 34
  subtype6  5  9   7 29
  subtype7  1  0   0  3
  subtype8  0  3   3 12
D2V7, multiclass
D2V8, binary
          cls
clus        0  1
  subtype1  7 36
  subtype2 10 37
  subtype3 11 29
  subtype4 10 34
  subtype5 16 42
  subtype6 17 36
  subtype7  2  3
  subtype8  5 14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7   36
  subtype2   10   37
  subtype3   11   29
  subtype4   10   34
  subtype5   16   42
  subtype6   17   36
  subtype7    2    3
  subtype8    5   14
D2V9, continuous
D2V10, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          12
  subtype2                                           7
  subtype3                                           9
  subtype4                                          14
  subtype5                                          23
  subtype6                                           8
  subtype7                                           3
  subtype8                                           6
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                      7             21
  subtype2                                     10              9
  subtype3                                      6             11
  subtype4                                      6             11
  subtype5                                      8             21
  subtype6                                     14             17
  subtype7                                      0              2
  subtype8                                      4              7
          vv
clus       LIFELONG NON-SMOKER
  subtype1                   2
  subtype2                  18
  subtype3                  11
  subtype4                  13
  subtype5                   3
  subtype6                  13
  subtype7                   0
  subtype8                   2
D2V11, multiclass
D2V12, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 40 42
  subtype2 38 47
  subtype3 27 18
subtype1 subtype2 subtype3 
      82       85       45 
subtype1 subtype2 subtype3 
      42       47       18 
$subtype1
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 
       15.16         8.15         6.25         5.88         7.96        57.44 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-CN-4723 TCGA-CN-4726 
       14.79         2.07         3.72         6.12        13.55         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 
        6.38        10.68         5.46        11.28        17.16        12.13 
TCGA-CN-4739 TCGA-CN-5355 TCGA-CN-5359 TCGA-CN-5361 TCGA-CN-5363 TCGA-CN-5364 
       11.44         9.17        12.39         6.35         8.28        16.21 
TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6018 
       11.84        12.49         9.01         7.50         5.06         1.48 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6997 TCGA-CQ-5326 TCGA-CQ-5329 
        3.19         9.07         6.18         3.29         2.93        27.65 
TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-6222 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 
       15.72        32.35        38.14        17.16       129.21        17.95 
TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       84.39        17.06        17.75        40.96        13.32        24.43 
TCGA-CV-6936 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6955 
        5.46        21.86       126.08        12.03        15.06        10.98 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7247 TCGA-CV-7248 
        7.99         9.01        71.21        10.75        18.97        17.10 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7406 TCGA-CV-7422 
        4.96        11.87        47.97        36.13        58.06        34.09 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7219 
       16.27        84.49        16.60         6.38        21.99        27.22 
TCGA-D6-6515 TCGA-D6-6823 TCGA-DQ-7592 TCGA-IQ-7630 
       13.25         7.82         9.83         5.26 

$subtype2
TCGA-BA-4078 TCGA-BA-5153 TCGA-CN-4731 TCGA-CN-4734 TCGA-CN-4736 TCGA-CN-4737 
        9.07        57.90        12.59         7.43        12.99         7.89 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-5370 
       26.63        28.77        13.05        28.47        11.57         8.52 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6022 
        6.81         4.70         6.61         5.23         4.41         6.61 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5330 
        3.75         1.51        39.68        21.50        38.89        29.46 
TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       10.42         4.21        32.88        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 
       14.96       135.29       108.33        19.20        89.82        87.55 
TCGA-CV-5444 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       64.73        48.59         7.07         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6954 
        9.70         4.70        19.79        42.35        30.05        65.82 
TCGA-CV-6956 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 
        7.13       111.12        18.81        12.66         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7242 TCGA-CV-7243 
       52.31        12.89        56.68         4.73        36.00        31.33 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
       18.41        35.54       210.94         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7429 TCGA-CV-7433 
       25.94         0.07        14.86        56.48         3.48        19.73 
TCGA-CV-7435 TCGA-CV-7446 TCGA-CV-7568 TCGA-CX-7085 TCGA-D6-6517 TCGA-D6-6827 
      142.49        35.93        30.48        10.55         8.22         4.18 
TCGA-DQ-7591 
       11.84 

$subtype3
TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6872 TCGA-CN-4722 TCGA-CN-4725 
       27.78         6.12         8.02        12.99         6.31        10.19 
TCGA-CN-4738 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5365 TCGA-CN-5373 TCGA-CQ-5323 
       14.33         9.50         5.69        11.54        13.58        48.16 
TCGA-CQ-5331 TCGA-CQ-6218 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CV-5442 
       33.80        28.60        26.76        33.07        22.78        76.47 
TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6937 TCGA-CV-6940 
       13.35        57.07        33.11        43.23        20.52        26.43 
TCGA-CV-6941 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-7177 TCGA-CV-7183 TCGA-CV-7238 
       11.24         6.08        53.92        21.76       114.94        47.47 
TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7255 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7423 
       26.20        95.34         2.10        89.33         9.67       100.54 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7434 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6824 
      156.49        54.90         7.13         7.76        10.68         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-IQ-7632 
        5.00         5.03         3.72 

subtype1 subtype2 subtype3 
    1.48     0.07     2.10 
subtype1 subtype2 subtype3 
  129.21   210.94   156.49 
subtype1 subtype2 subtype3 
   12.08    13.05    20.52 
[1] "1.5 - 129.2 (12.1)" "0.1 - 210.9 (13.1)" "2.1 - 156.5 (20.5)"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [37] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [55] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[103] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[127] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[211] "subtype1" "subtype3"
D3V2, continuous
D3V3, binary
          cls
clus        0  1
  subtype1 19 63
  subtype2 25 60
  subtype3 18 27
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   63
  subtype2   25   60
  subtype3   18   27
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       19       25       18
  MALE         63       60       27
          vv
clus       T1 T2 T3 T4
  subtype1  3 24 16 34
  subtype2  6 18 27 32
  subtype3  4 17 10 13
D3V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 27  9 30  1
  subtype2 19  8 40  2
  subtype3 27  3  9  1
D3V5, multiclass
D3V6, binary
          cls
clus        0
  subtype1 10
  subtype2  8
  subtype3  2
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus        I II III IV
  subtype1  1 17  12 47
  subtype2  4  9  12 55
  subtype3  4 13   7 19
D3V7, multiclass
D3V8, binary
          cls
clus        0  1
  subtype1 25 57
  subtype2 23 62
  subtype3  8 37
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   57
  subtype2   23   62
  subtype3    8   37
     clus
vv    subtype1 subtype2 subtype3
  NO        25       23        8
  YES       57       62       37
D3V9, continuous
D3V10, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          20
  subtype2                                          27
  subtype3                                          13
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     10             28
  subtype2                                     21             24
  subtype3                                      7             12
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  19
  subtype2                  10
  subtype3                  11
D3V11, multiclass
D3V12, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 59 56
  subtype2 39 42
  subtype3  7  9
subtype1 subtype2 subtype3 
     115       81       16 
subtype1 subtype2 subtype3 
      56       42        9 
$subtype1
TCGA-BA-4078 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6869 
        9.07        27.78        57.90         6.12        57.44         8.02 
TCGA-BA-6871 TCGA-CN-4722 TCGA-CN-4731 TCGA-CN-4734 TCGA-CN-4740 TCGA-CN-4741 
        2.07         6.31        12.59         7.43        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5365 
       13.05         9.50         5.69        28.47         6.35        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6013 
       11.84        11.57         8.52        13.58         9.01         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        6.61         5.23         4.41         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 
        3.75         1.51        48.16        39.68        21.50        38.89 
TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6222 
       29.46        10.42         4.21        28.60        32.35        38.14 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7065 TCGA-CV-5430 
       32.35        13.25         4.21        14.96        33.07       135.29 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
      108.33        19.20        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6441 
       64.73        57.07        48.59         7.07        13.32         5.88 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6948 
        2.14         9.70         4.70        11.24        19.79        42.35 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-7091 TCGA-CV-7095 
       30.05         6.08        53.92        65.82       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7235 TCGA-CV-7236 
       12.66         5.23         1.84        12.89        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7243 TCGA-CV-7245 TCGA-CV-7250 TCGA-CV-7255 
       47.47        36.00        31.33        26.20        95.34         2.10 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 
       18.41        35.54       210.94        89.33         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02        25.94         0.07       100.54        14.86        56.48 
TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7446 
        3.48        19.73         7.13       142.49        16.60        35.93 
TCGA-CV-7568 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6827 
       30.48        10.55         7.76         8.22         2.53         4.18 
TCGA-DQ-7591 
       11.84 

$subtype2
TCGA-BA-4074 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6870 
       15.16         8.15         6.25         5.88         7.96        14.79 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 
       12.99         3.72         6.12        13.55         6.38         5.46 
TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-5355 
       11.28        17.16        12.13        14.33        11.44         9.17 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-6011 TCGA-CN-6018 TCGA-CN-6020 TCGA-CQ-5326 
       12.39         8.28         7.50         1.48         3.19         2.93 
TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-6219 TCGA-CQ-6221 TCGA-CQ-6229 TCGA-CQ-7068 
       27.65        33.80        15.72        32.88        26.76        22.78 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5977 
       17.16       129.21        17.95        17.06        17.75        33.11 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6936 TCGA-CV-6937 
       43.23        40.96        24.43        90.08         5.46        20.52 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6955 TCGA-CV-6956 
       26.43       126.08        12.03        15.06        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
        7.99         9.01        21.76        71.21        10.75       114.94 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7261 TCGA-CV-7406 
       18.97        17.10         4.96        11.87        36.13        58.06 
TCGA-CV-7413 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7438 
        9.67       156.49        54.90        16.27        84.49         6.38 
TCGA-CV-7440 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 
       21.99        27.22        13.25        10.68         7.82         5.00 
TCGA-DQ-7592 TCGA-IQ-7630 TCGA-IQ-7632 
        9.83         5.26         3.72 

$subtype3
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-5364 
       10.19         4.67        10.68        12.99         7.89        16.21 
TCGA-CN-5369 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6997 TCGA-CV-5970 TCGA-CV-6939 
       12.49         6.81         4.70         3.29        13.35        21.86 
TCGA-CV-7103 TCGA-CV-7254 TCGA-CV-7422 TCGA-D6-6826 
       52.31        47.97        34.09         5.03 

subtype1 subtype2 subtype3 
    0.07     1.48     3.29 
subtype1 subtype2 subtype3 
  210.94   156.49    52.31 
subtype1 subtype2 subtype3 
  13.250   13.550   11.585 
[1] "0.1 - 210.9 (13.2)" "1.5 - 156.5 (13.6)" "3.3 - 52.3 (11.6)" 
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype2"
  [1] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [19] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [31] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [49] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [55] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [73] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [85] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[103] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[175] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[199] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[205] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[211] "subtype2" "subtype2"
D4V2, continuous
D4V3, binary
          cls
clus        0  1
  subtype1 35 80
  subtype2 22 59
  subtype3  5 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35   80
  subtype2   22   59
  subtype3    5   11
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       35       22        5
  MALE         80       59       11
          vv
clus       T1 T2 T3 T4
  subtype1  7 25 36 42
  subtype2  5 30 13 30
  subtype3  1  4  4  7
D4V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 39  8 46  3
  subtype2 32 11 22  1
  subtype3  2  1 11  0
D4V5, multiclass
D4V6, binary
          cls
clus        0
  subtype1 13
  subtype2  5
  subtype3  2
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus        I II III IV
  subtype1  6 16  18 69
  subtype2  3 21  13 39
  subtype3  0  2   0 13
D4V7, multiclass
D4V8, binary
          cls
clus        0  1
  subtype1 30 85
  subtype2 20 61
  subtype3  6 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   30   85
  subtype2   20   61
  subtype3    6   10
     clus
vv    subtype1 subtype2 subtype3
  NO        30       20        6
  YES       85       61       10
D4V9, continuous
D4V10, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          34
  subtype2                                          22
  subtype3                                           4
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     26             33
  subtype2                                     11             24
  subtype3                                      1              7
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  18
  subtype2                  18
  subtype3                   4
D4V11, multiclass
D4V12, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 76 42
  subtype2 51 40
  subtype3 52 38
subtype1 subtype2 subtype3 
     118       91       90 
subtype1 subtype2 subtype3 
      42       40       38 
$subtype1
TCGA-BA-4074 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-6869 
       15.16        37.28         9.07        57.90         6.12         8.02 
TCGA-BA-6871 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 
        2.07         7.76         6.12        95.05         4.60        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       10.19        17.59        23.61        20.98        37.87        14.04 
TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 
       13.55         6.38        12.59        12.13        14.33        11.44 
TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5374 TCGA-CN-6010 
       28.77         9.50        28.47         6.35         9.01         6.81 
TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 
        4.70         9.07         6.18         1.38         2.73         3.91 
TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6225 TCGA-CQ-6228 
        3.29        48.16        10.42        32.88        13.25        14.96 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6482 
       50.01        34.52        36.99         6.02        10.22        11.34 
TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
        7.66        47.18        40.90        35.84         3.42         3.06 
TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7393 TCGA-CR-7398 
        0.99        32.78        27.02        12.89        29.85         5.13 
TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        5.92        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5443 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 
       84.39         7.07        13.32        90.08         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6948 TCGA-CV-6960 
       20.52        21.86        11.24       126.08        42.35        28.31 
TCGA-CV-6962 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7236 
        4.14         9.01         5.23        21.76        56.68         4.73 
TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       36.00        17.10        95.34        11.87        47.97        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
       35.54        17.82         0.46        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7430 TCGA-CV-7437 TCGA-CV-7440 TCGA-D6-6824 TCGA-D6-6826 
       14.86        16.27        16.60        21.99         2.53         5.03 
TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7594 
       16.96        18.90        21.73        11.84        12.13        12.10 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-HD-7754 TCGA-IQ-7631 
       10.65         1.15         0.82         4.01 

$subtype2
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5559 TCGA-BA-6873 TCGA-BB-7872 TCGA-CN-4725 
        9.30         8.15        57.44         3.72        14.33        10.19 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-5355 
       10.68        17.16        12.99         7.89        26.63         9.17 
TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 
        5.69         8.28        16.21        11.84        11.57         8.52 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6022 
        5.06         6.61         5.23         1.48         4.41         6.61 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 TCGA-CQ-5325 TCGA-CQ-5329 TCGA-CQ-5330 
        7.36         5.82         3.68        21.50        27.65        29.46 
TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7067 
       15.72        38.14        32.35         4.21        26.76        16.70 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 TCGA-CR-7376 
       18.51        16.90        12.46        39.12        24.95        31.96 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 TCGA-CR-7397 TCGA-CR-7401 
       26.17        17.13        47.01        30.02         7.10        35.41 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 
      108.33        47.28        19.20        89.82        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6934 
       13.35        17.75        48.59        43.23         5.88         2.14 
TCGA-CV-6940 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
       26.43        15.06        30.05         7.13         8.38         2.50 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 
       18.81        12.66         1.84        52.31        12.89        71.21 
TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7415 
       47.47        31.33        18.97        18.41        58.06        22.85 
TCGA-CV-7429 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 
        3.48       142.49         6.38        10.39        10.55        13.25 
TCGA-D6-6825 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 
        5.00        37.78        34.78        15.68        18.02         9.83 
TCGA-HD-7753 
        0.16 

$subtype3
TCGA-BA-4076 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       13.64         6.25        27.78         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BB-4224 TCGA-BB-7863 TCGA-CN-4722 
        5.00        14.79        12.99         9.04        13.87         6.31 
TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4734 TCGA-CN-4742 TCGA-CN-5359 
        4.67         5.46        11.28         7.43        13.05        12.39 
TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6020 TCGA-CN-6998 
       11.54        12.49        13.58         7.50         3.19         1.51 
TCGA-CQ-5324 TCGA-CQ-5326 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       39.68         2.93        33.80         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-6471 TCGA-CR-6484 TCGA-CR-6491 
       34.75        33.07        22.78        39.52        11.64        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7373 TCGA-CR-7379 TCGA-CR-7380 
       15.75         9.27        47.34        29.23        34.06        19.92 
TCGA-CR-7390 TCGA-CR-7392 TCGA-CR-7394 TCGA-CR-7395 TCGA-CV-5439 TCGA-CV-5441 
       29.82        31.10        29.52        30.54        17.95        87.55 
TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6938 
       76.47        57.07        33.11        40.96        24.43         4.70 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       19.79        12.03         6.08        53.92        65.82        10.98 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7180 TCGA-CV-7183 
       64.80       126.12       111.12         7.99        10.75       114.94 
TCGA-CV-7245 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       26.20         4.96         2.10       210.94        89.33         9.67 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7433 
       25.02       100.54       156.49        54.90        84.49        19.73 
TCGA-CV-7434 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.13         7.76        27.22        10.68         8.22         7.82 
TCGA-DQ-7588 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7917 TCGA-IQ-7630 TCGA-IQ-7632 
       14.04         0.99         0.07         1.02         5.26         3.72 

subtype1 subtype2 subtype3 
    0.07     0.16     0.07 
subtype1 subtype2 subtype3 
  135.29   142.49   210.94 
subtype1 subtype2 subtype3 
  14.185   15.720   13.955 
[1] "0.1 - 135.3 (14.2)" "0.2 - 142.5 (15.7)" "0.1 - 210.9 (14.0)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
 [49] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [55] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
 [61] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [67] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [79] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[103] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[145] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[181] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[193] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[211] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[217] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[235] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[241] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[247] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
D5V2, continuous
D5V3, binary
          cls
clus        0  1
  subtype1 25 93
  subtype2 27 66
  subtype3 29 62
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   93
  subtype2   27   66
  subtype3   29   62
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       25       27       29
  MALE         93       66       62
          vv
clus       T1 T2 T3 T4
  subtype1  6 25 24 36
  subtype2 13 25 19 29
  subtype3  4 28 17 36
D5V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 34 10 32  3
  subtype2 28 10 42  1
  subtype3 38 12 23  1
D5V5, multiclass
D5V6, binary
          cls
clus        0
  subtype1 20
  subtype2 20
  subtype3 14
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus        I II III IV
  subtype1  2 15  17 54
  subtype2 11 12  10 52
  subtype3  3 20  14 47
D5V7, multiclass
D5V8, binary
          cls
clus        0  1
  subtype1 25 93
  subtype2 27 66
  subtype3 23 68
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   93
  subtype2   27   66
  subtype3   23   68
     clus
vv    subtype1 subtype2 subtype3
  NO        25       27       23
  YES       93       66       68
D5V9, continuous
D5V10, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          37
  subtype2                                          24
  subtype3                                          21
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     17             42
  subtype2                                     16             29
  subtype3                                     20             27
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  17
  subtype2                  21
  subtype3                  20
D5V11, multiclass
D5V12, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 52 43
  subtype2 48 36
  subtype3 79 41
subtype1 subtype2 subtype3 
      95       84      120 
subtype1 subtype2 subtype3 
      43       36       41 
$subtype1
TCGA-BA-5149 TCGA-BA-5557 TCGA-BA-6873 TCGA-BB-4224 TCGA-CN-4725 TCGA-CN-4726 
        8.15         7.96         3.72         9.04        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 
       10.68        17.16        12.99         7.89        26.63        13.05 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 
        9.17         5.69         8.28        16.21        11.84        11.57 
TCGA-CN-5370 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        8.52         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6998 TCGA-CQ-5325 
        6.61         7.36         5.82         3.68         1.51        21.50 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 
       27.65        29.46        15.72        38.14        32.35         4.21 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-6474 TCGA-CR-6488 TCGA-CR-7365 
       26.76        33.07        16.70        18.51        12.46        39.12 
TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 
       24.95        31.96        26.17        17.13        47.01        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7397 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5435 
       31.10        29.85         7.10        35.41       108.33        47.28 
TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 
       89.82        64.73        17.06        13.35        17.75        48.59 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
        5.88         2.14        26.43        19.79        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7095 TCGA-CV-7097 
        6.08         7.13         8.38         2.50        18.81        12.66 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7238 TCGA-CV-7243 
        1.84        52.31        12.89        71.21        47.47        31.33 
TCGA-CV-7247 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7423 TCGA-CV-7429 
       18.97         2.10        18.41        58.06       100.54         3.48 
TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6825 
      142.49         6.38        10.39        10.55        13.25         5.00 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 
       37.78        34.78        15.68        18.02         9.83 

$subtype2
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5558 
        9.30        13.64         6.25        27.78         5.88        53.75 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BB-7863 TCGA-BB-7872 TCGA-CN-4722 
        5.00        14.79        12.99        13.87        14.33         6.31 
TCGA-CN-4723 TCGA-CN-4729 TCGA-CN-4734 TCGA-CN-5359 TCGA-CN-5365 TCGA-CN-5369 
       13.55         5.46         7.43        12.39        11.54        12.49 
TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6020 TCGA-CN-6994 TCGA-CQ-5324 TCGA-CQ-5326 
       13.58         7.50         3.19         3.91        39.68         2.93 
TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-7068 
       33.80         4.21        28.60        32.35        34.75        22.78 
TCGA-CR-6471 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 
       39.52        16.90         6.02        11.64        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7373 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7394 
        9.27        47.34        29.23        34.06        19.92        29.52 
TCGA-CR-7395 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 
       30.54        19.20        17.95        76.47        57.07        33.11 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6942 
       43.23        40.96        24.43        20.52         4.70       126.08 
TCGA-CV-6945 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7099 
       12.03        53.92        10.98        64.80       126.12         7.99 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7252 TCGA-CV-7410 TCGA-CV-7411 
       10.75       114.94         4.73         4.96       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7427 TCGA-CV-7432 TCGA-CV-7433 
        9.67        22.85        25.02       156.49        84.49        19.73 
TCGA-CV-7434 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6826 
        7.13         7.76        27.22        10.68         8.22         5.03 
TCGA-DQ-7588 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-IQ-7630 TCGA-IQ-7632 
       14.04         0.99         0.07         0.16         5.26         3.72 

$subtype3
TCGA-BA-4074 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5559 
       15.16        37.28         9.07        57.90         6.12        57.44 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 
        8.02         2.07         7.76         6.12        95.05         4.60 
TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 
       18.31        10.19        17.59        23.61        20.98        37.87 
TCGA-BB-7871 TCGA-CN-4727 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 
       14.04         6.38        11.28        12.59        12.13        14.33 
TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5374 
       11.44        28.77         9.50        28.47         6.35         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6021 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6992 
        6.81         4.70         9.07         6.18         1.38         2.73 
TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6225 TCGA-CQ-6228 
        3.29        48.16        10.42        32.88        13.25        14.96 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6487 
       50.01        34.52        36.99        10.22        11.34         7.66 
TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 
       47.18        40.90        35.84         3.42         3.06         0.99 
TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7399 
       32.78        27.02        12.89        29.82         5.13         5.92 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5441 
       29.92        48.36       135.29        17.16       129.21        87.55 
TCGA-CV-5443 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 
       84.39         7.07        13.32        90.08         9.70         5.46 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-6962 
       21.86        11.24        42.35        65.82        28.31         4.14 
TCGA-CV-7091 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7242 
      111.12         9.01         5.23        21.76        56.68        36.00 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       26.20        17.10        95.34        11.87        47.97        36.13 
TCGA-CV-7407 TCGA-CV-7409 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
       35.54        17.82         0.46        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7437 TCGA-CV-7440 TCGA-D6-6823 
       14.86        54.90        16.27        16.60        21.99         7.82 
TCGA-D6-6824 TCGA-DQ-5629 TCGA-DQ-7589 TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 
        2.53        16.96        18.90        21.73        11.84        12.13 
TCGA-DQ-7594 TCGA-DQ-7595 TCGA-F7-7848 TCGA-HD-7754 TCGA-HD-7917 TCGA-IQ-7631 
       12.10        10.65         1.15         0.82         1.02         4.01 

subtype1 subtype2 subtype3 
    1.48     0.07     0.07 
subtype1 subtype2 subtype3 
  142.49   210.94   135.29 
subtype1 subtype2 subtype3 
  15.060   13.955   15.060 
[1] "1.5 - 142.5 (15.1)" "0.1 - 210.9 (14.0)" "0.1 - 135.3 (15.1)"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [61] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [73] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [79] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [85] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
 [91] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[103] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[169] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[241] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[259] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[265] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[277] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[283] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[289] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 31 66
  subtype2 29 56
  subtype3 21 99
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   31   66
  subtype2   29   56
  subtype3   21   99
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       31       29       21
  MALE         66       56       99
          vv
clus       T1 T2 T3 T4
  subtype1 13 27 22 30
  subtype2  4 26 15 32
  subtype3  6 25 23 39
D6V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 27 12 45  1
  subtype2 37 10 20  1
  subtype3 36 10 32  3
D6V5, multiclass
D6V6, binary
          cls
clus        0
  subtype1 22
  subtype2 12
  subtype3 20
[1] "NOT AVAILABLE: table only has an event [0]"
          vv
clus        I II III IV
  subtype1  9 14  12 56
  subtype2  4 18  13 41
  subtype3  3 15  16 56
D6V7, multiclass
D6V8, binary
          cls
clus        0  1
  subtype1 28 69
  subtype2 20 65
  subtype3 27 93
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28   69
  subtype2   20   65
  subtype3   27   93
     clus
vv    subtype1 subtype2 subtype3
  NO        28       20       27
  YES       69       65       93
D6V9, continuous
D6V10, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          24
  subtype2                                          21
  subtype3                                          37
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     19             29
  subtype2                                     17             22
  subtype3                                     17             47
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  23
  subtype2                  20
  subtype3                  15
D6V11, multiclass
D6V12, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 64 36
  subtype2 79 48
  subtype3 53 39
subtype1 subtype2 subtype3 
     100      127       92 
subtype1 subtype2 subtype3 
      36       48       39 
$subtype1
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        13.64         8.15         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 
        5.88         7.96        53.75         5.00         8.02        12.99 
TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-7863 TCGA-BB-7864 TCGA-BB-7866 
        3.72         6.12         9.04        13.87        23.61        20.98 
TCGA-BB-7872 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 
       14.33        10.19         4.67         6.38         5.46        11.28 
TCGA-CN-5356 TCGA-CN-5361 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 
        9.50         6.35         8.28        11.54        11.84        12.49 
TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6021 TCGA-CN-6995 TCGA-CN-6998 TCGA-CQ-5326 
       13.58         7.50         9.07         3.68         1.51         2.93 
TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       27.65        33.80         4.21        28.60        32.35        32.88 
TCGA-CQ-7063 TCGA-CQ-7064 TCGA-CR-6478 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 
       48.03        45.27         6.02        11.64        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7373 TCGA-CR-7380 TCGA-CR-7390 TCGA-CR-7394 TCGA-CR-7395 
        9.27        29.23        19.92        29.82        29.52        30.54 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6436 
       17.95        87.55        76.47        57.07        33.11        24.43 
TCGA-CV-6938 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-7089 
        4.70       126.08        12.03        65.82        10.98        64.80 
TCGA-CV-7090 TCGA-CV-7099 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7252 
      126.12         7.99        10.75       114.94        56.68         4.96 
TCGA-CV-7410 TCGA-CV-7413 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7434 
      210.94         9.67       156.49        54.90        84.49         7.13 
TCGA-CV-7440 TCGA-CV-7568 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 TCGA-D6-6517 
       21.99        30.48         7.76        27.22        10.68         8.22 
TCGA-D6-6823 TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7589 TCGA-DQ-7590 
        7.82        16.96        18.02        14.04        18.90        21.73 
TCGA-DQ-7592 TCGA-DQ-7593 TCGA-F7-8489 TCGA-H7-8501 TCGA-HD-7229 TCGA-HD-7753 
        9.83        12.13         0.43         1.87         0.07         0.16 
TCGA-HD-8634 TCGA-HL-7533 TCGA-IQ-7630 TCGA-IQ-7632 
        0.99        22.75         5.26         3.72 

$subtype2
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6870 TCGA-BA-6871 TCGA-BB-4223 
       37.28         9.07         6.12        14.79         2.07        95.05 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7870 
        4.60         4.37        18.31        10.19        17.59        37.87 
TCGA-BB-7871 TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4731 TCGA-CN-4735 
       14.04        20.52         6.31        13.55        12.59        12.13 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5359 TCGA-CN-5360 
        7.89        14.33        11.44        28.77        12.39        28.47 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6018 TCGA-CN-6023 
        9.01         6.81         4.70         5.06         1.48         6.18 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-5324 
        1.38         2.73         3.91         3.29        48.16        39.68 
TCGA-CQ-5332 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7068 TCGA-CQ-7069 
       10.42        34.75        13.25        14.96        22.78        29.59 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6480 TCGA-CR-6481 
       50.01        39.52        34.52        36.99        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       11.34         7.66        47.18        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 
        3.42         3.06         0.99        32.78        27.02        12.89 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13         5.92        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5443 TCGA-CV-5978 TCGA-CV-6433 
       17.16       129.21        47.28        84.39         7.07        13.32 
TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6939 TCGA-CV-6940 
       90.08         9.70         5.46        20.52        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7091 
       11.24        42.35        53.92        28.31         4.14       111.12 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7236 TCGA-CV-7242 
        9.01         5.23        52.31        21.76         4.73        36.00 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       26.20        17.10        95.34        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7409 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
       36.13        17.82        89.33         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7430 TCGA-CV-7435 
       25.94         0.07        14.86        56.48        16.27       142.49 
TCGA-CV-7437 TCGA-CV-7446 TCGA-CX-7082 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-7591 
       16.60        35.93        10.39         5.03         4.18        11.84 
TCGA-DQ-7595 TCGA-F7-7848 TCGA-F7-8298 TCGA-H7-7774 TCGA-HD-7754 TCGA-HD-7917 
       10.65         1.15         0.46         0.99         0.82         1.02 
TCGA-IQ-7631 
        4.01 

$subtype3
TCGA-BA-5559 TCGA-BA-7269 TCGA-BB-8596 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 
       57.44         7.76        71.05        10.68        17.16        12.99 
TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5364 TCGA-CN-5367 
       26.63        13.05         9.17         5.69        16.21        11.57 
TCGA-CN-5370 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
        8.52         6.61         5.23         4.41         3.19         6.61 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6996 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5330 
        7.36         5.82         3.75        21.50        38.89        29.46 
TCGA-CQ-5333 TCGA-CQ-6219 TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 
       11.21        15.72        38.14        32.35         4.21        26.76 
TCGA-CQ-7065 TCGA-CQ-7067 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 
       33.07        16.70        18.51        16.90        12.46        39.12 
TCGA-CR-7372 TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 
       24.95        31.96        34.06        26.17        17.13        47.01 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7401 TCGA-CV-5434 TCGA-CV-5436 
       30.02        31.10        29.85        35.41       108.33        19.20 
TCGA-CV-5440 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 
       89.82        64.73        17.06        13.35        17.75        48.59 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6943 TCGA-CV-6950 
       43.23        40.96         5.88         2.14        19.79        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7095 
       30.05         6.08         7.13         8.38         2.50        18.81 
TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7238 TCGA-CV-7243 
       12.66         1.84        12.89        71.21        47.47        31.33 
TCGA-CV-7247 TCGA-CV-7263 TCGA-CV-7406 TCGA-CV-7407 TCGA-CV-7422 TCGA-CV-7423 
       18.97        18.41        58.06        35.54        34.09       100.54 
TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7438 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 
        3.48        19.73         6.38        10.55        13.25         2.53 
TCGA-D6-6825 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7594 TCGA-HD-8224 
        5.00        37.78        34.78        15.68        12.10         1.81 
TCGA-HD-8314 TCGA-HD-8635 
        1.45         0.99 

subtype1 subtype2 subtype3 
    0.07     0.07     0.99 
subtype1 subtype2 subtype3 
  210.94   142.49   108.33 
subtype1 subtype2 subtype3 
  12.310   14.790   17.095 
[1] "0.1 - 210.9 (12.3)" "0.1 - 142.5 (14.8)" "1.0 - 108.3 (17.1)"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[235] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[253] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[319] "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[235] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[253] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[319] "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [37] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [91] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [97] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[103] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[133] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[151] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[163] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[175] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[205] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[235] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[241] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[253] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[271] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[277] "subtype1" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[301] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[307] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[319] "subtype1"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 24 78
  subtype2 35 92
  subtype3 33 61
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24   78
  subtype2   35   92
  subtype3   33   61
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       24       35       33
  MALE         78       92       61
          vv
clus       T1 T2 T3 T4
  subtype1  7 29 16 35
  subtype2  8 26 28 44
  subtype3 13 26 21 27
D7V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 36 10 25  2
  subtype2 43 11 40  3
  subtype3 25 15 38  0
D7V5, multiclass
D7V6, binary
          cls
clus        0  1
  subtype1 15  3
  subtype2 22  1
  subtype3 20  2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15    3
  subtype2   22    1
  subtype3   20    2
    clus
vv   subtype1 subtype2 subtype3
  M0       15       22       20
  MX        3        1        2
          vv
clus        I II III IV
  subtype1  6 19  12 47
  subtype2  5 16  18 66
  subtype3  9 14  14 49
D7V7, multiclass
D7V8, binary
          cls
clus         0   1
  subtype1  24  78
  subtype2  27 100
  subtype3  26  68
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24   78
  subtype2   27  100
  subtype3   26   68
     clus
vv    subtype1 subtype2 subtype3
  NO        24       27       26
  YES       78      100       68
D7V9, continuous
D7V10, continuous
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          25
  subtype2                                          37
  subtype3                                          22
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     19             35
  subtype2                                     17             45
  subtype3                                     22             24
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  20
  subtype2                  22
  subtype3                  24
D7V11, multiclass
D7V12, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1 112  68
  subtype2  77  52
  subtype3   7   3
subtype1 subtype2 subtype3 
     180      129       10 
subtype1 subtype2 subtype3 
      68       52        3 
$subtype1
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5153 
       15.16        13.64        37.28         9.07         6.25        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
        6.12         5.88        53.75         5.00         8.02        14.79 
TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        2.07        95.05         9.04         4.60         4.37        18.31 
TCGA-BB-7861 TCGA-BB-7862 TCGA-BB-7864 TCGA-BB-7866 TCGA-BB-7870 TCGA-BB-7871 
       10.19        17.59        23.61        20.98        37.87        14.04 
TCGA-BB-8601 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 
       20.52         6.31        13.55         6.38         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4741 TCGA-CN-5356 
       12.59        12.13        14.33        11.44        28.77         9.50 
TCGA-CN-5359 TCGA-CN-5361 TCGA-CN-5365 TCGA-CN-5369 TCGA-CN-5374 TCGA-CN-6010 
       12.39         6.35        11.54        12.49         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6018 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 
        7.50         4.70         1.48         3.19         9.07         6.18 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-5324 
        1.38         2.73         3.91         3.29        48.16        39.68 
TCGA-CQ-5326 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
        2.93        33.80        10.42        28.60        32.88        34.75 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7063 TCGA-CQ-7068 TCGA-CQ-7069 TCGA-CR-5243 
       13.25        14.96        48.03        22.78        29.59        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       39.52        34.52        36.99         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64         7.66        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       47.18        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7385 TCGA-CR-7388 TCGA-CR-7389 
       29.23         0.99        19.92        32.78        27.02        12.89 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.13         5.92        29.92        48.36       135.29        17.16 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5973 TCGA-CV-5978 
       17.95        87.55        76.47        84.39        57.07         7.07 
TCGA-CV-6433 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       13.32        90.08         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6954 
       21.86        11.24       126.08        42.35        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       10.98        28.31         4.14        64.80       126.12       111.12 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7183 TCGA-CV-7236 
        7.99         9.01         5.23        21.76       114.94         4.73 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       36.00        26.20        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7409 TCGA-CV-7410 TCGA-CV-7411 
       47.97         2.10        36.13        17.82       210.94        89.33 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 TCGA-CV-7425 
       22.85        25.02        25.94         0.07        14.86        56.48 
TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       54.90        16.27        84.49         7.13       142.49        16.60 
TCGA-CV-7440 TCGA-CV-7446 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       21.99        35.93         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-7588 TCGA-DQ-7589 
        8.22         5.03         4.18        16.96        14.04        18.90 
TCGA-DQ-7590 TCGA-DQ-7591 TCGA-DQ-7593 TCGA-DQ-7595 TCGA-F7-7848 TCGA-H7-7774 
       21.73        11.84        12.13        10.65         1.15         0.99 
TCGA-HD-7229 TCGA-HD-7754 TCGA-HD-7917 TCGA-HL-7533 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.82         1.02        22.75         4.01         3.72 

$subtype2
TCGA-BA-5149 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-7872 
        8.15         7.96        57.44        12.99         3.72        14.33 
TCGA-BB-8596 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 
       71.05        10.19         4.67        10.68        17.16        12.99 
TCGA-CN-4737 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5360 
        7.89        26.63        13.05         9.17         5.69        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-5373 
        8.28        16.21        11.84        11.57         8.52        13.58 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6022 TCGA-CN-6024 
        5.06         6.61         5.23         4.41         6.61         7.36 
TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5325 TCGA-CQ-5327 
        5.82         3.68         3.75         1.51        21.50        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5333 TCGA-CQ-5334 TCGA-CQ-6219 TCGA-CQ-6220 
       27.65        29.46        11.21         4.21        15.72        32.35 
TCGA-CQ-6222 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7064 TCGA-CQ-7065 
       38.14        32.35         4.21        26.76        45.27        33.07 
TCGA-CQ-7067 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7372 
       16.70        18.51        16.90        12.46        39.12        24.95 
TCGA-CR-7376 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7391 
       31.96        34.06        26.17        17.13        47.01        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 
       31.10        29.85        29.52        30.54         7.10        35.41 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5444 
      129.21       108.33        47.28        19.20        89.82        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 
       17.06        13.35        17.75        48.59        33.11        43.23 
TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6943 
       40.96        24.43         5.88         2.14        26.43        19.79 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
       15.06        30.05         6.08         7.13         8.38         2.50 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 
       18.81        12.66         1.84        52.31        12.89        71.21 
TCGA-CV-7180 TCGA-CV-7238 TCGA-CV-7243 TCGA-CV-7247 TCGA-CV-7263 TCGA-CV-7406 
       10.75        47.47        31.33        18.97        18.41        58.06 
TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7427 TCGA-CV-7433 
       35.54         0.46        34.09       100.54       156.49        19.73 
TCGA-CV-7438 TCGA-CV-7568 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6824 TCGA-D6-6825 
        6.38        30.48        10.39        10.55         2.53         5.00 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-DQ-7594 
       37.78        34.78        15.68        18.02         9.83        12.10 
TCGA-F7-8298 TCGA-F7-8489 TCGA-H7-8501 TCGA-HD-7753 TCGA-HD-8224 TCGA-HD-8314 
        0.46         0.43         1.87         0.16         1.81         1.45 
TCGA-HD-8634 TCGA-HD-8635 TCGA-IQ-7630 
        0.99         0.99         5.26 

$subtype3
TCGA-BA-5152 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-7863 TCGA-CR-7390 TCGA-CV-6945 
       27.78         7.76         6.12        13.87        29.82        12.03 
TCGA-CV-7235 TCGA-CV-7413 TCGA-CV-7429 TCGA-D6-6823 
       56.68         9.67         3.48         7.82 

subtype1 subtype2 subtype3 
    0.07     0.16     3.48 
subtype1 subtype2 subtype3 
  210.94   156.49    56.68 
subtype1 subtype2 subtype3 
  14.185   16.210   10.850 
[1] "0.1 - 210.9 (14.2)" "0.2 - 156.5 (16.2)" "3.5 - 56.7 (10.8)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[235] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[319] "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[235] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[319] "subtype1"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [67] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [85] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [91] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [97] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[115] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[145] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[157] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[223] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[229] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[235] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[241] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[271] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[277] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[283] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[289] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[313] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[319] "subtype1"
D8V2, continuous
D8V3, binary
          cls
clus         0   1
  subtype1  48 134
  subtype2  42  89
  subtype3   2   8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   48  134
  subtype2   42   89
  subtype3    2    8
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       48       42        2
  MALE        134       89        8
          vv
clus       T1 T2 T3 T4
  subtype1  9 43 34 63
  subtype2 19 34 30 38
  subtype3  0  4  1  5
D8V4, multiclass
          vv
clus       N0 N1 N2 N3
  subtype1 58 18 49  4
  subtype2 40 17 51  1
  subtype3  6  1  3  0
D8V5, multiclass
D8V6, binary
          cls
clus        0  1
  subtype1 27  2
  subtype2 28  4
  subtype3  2  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27    2
  subtype2   28    4
  subtype3    2    0
    clus
vv   subtype1 subtype2 subtype3
  M0       27       28        2
  MX        2        4        0
          vv
clus        I II III IV
  subtype1  6 26  25 88
  subtype2 14 20  17 69
  subtype3  0  3   2  5
D8V7, multiclass
D8V8, binary
          cls
clus         0   1
  subtype1  39 143
  subtype2  34  97
  subtype3   4   6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   39  143
  subtype2   34   97
  subtype3    4    6
     clus
vv    subtype1 subtype2 subtype3
  NO        39       34        4
  YES      143       97        6
D8V9, continuous
D8V10, continuous
[1] "Remove cluster labels:" "subtype3"              
clus
subtype1 subtype2 subtype3 
      74       49        2 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [19] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
 [49] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [91] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [97] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype1"
          vv
clus       CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  subtype1                                          54
  subtype2                                          29
  subtype3                                           1
          vv
clus       CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  subtype1                                     28             60
  subtype2                                     29             39
  subtype3                                      1              5
          vv
clus       LIFELONG NON-SMOKER
  subtype1                  32
  subtype2                  32
  subtype3                   2
D8V11, multiclass
D8V12, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                           "PATHOLOGY.T" 
                                      V5 
                           "PATHOLOGY.N" 
                                      V6 
                   "PATHOLOGICSPREAD(M)" 
                                      V7 
                           "TUMOR.STAGE" 
                                      V8 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V9 
                 "NUMBERPACKYEARSSMOKED" 
                                     V10 
                    "STOPPEDSMOKINGYEAR" 
                                     V11 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V12 
             "YEAROFTOBACCOSMOKINGONSET" 
> q(save="no")
