
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvarms_onlysig.2.4053/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/334704/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/HNSC-TP/2666388/1.GDAC_mergedClustering.Finished/HNSC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=HNSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=328, in cluster file=322, common to both=322
[1] "Reduce the number of clustering variables from 80 to 79."
[1]  79 322
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               12               310 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               12               310 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               41               281 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               41               281 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               30               292 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               30               292 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               20               302 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               20               302 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               27               295 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               27               295 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              104               218 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              104               218 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               309 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               309 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               313 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               313 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               82               240 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               82               240 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               28               294 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               28               294 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               26               296 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               26               296 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               19               303 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               19               303 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               72               250 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               72               250 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               45               277 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               45               277 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               49               273 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               49               273 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              129               193 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              129               193 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               38               284 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               38               284 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               47               275 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               47               275 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                310 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                310 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                316 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                316 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                16                306 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                16                306 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                16                306 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                16                306 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                61                261 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                61                261 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                25                297 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                25                297 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                17                305 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                17                305 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                52                270 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                52                270 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                13                309 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                13                309 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                21                301 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                21                301 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                28                294 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                28                294 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                19                303 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                19                303 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                299 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                299 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                52                270 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                52                270 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                302 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                20                302 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                310 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                310 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                21                301 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                21                301 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                65                257 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                65                257 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                70                252 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                70                252 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                313 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                313 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                39                283 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                39                283 
[1] "Xq gain mutation analysis"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               21               301 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               21               301 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               16               306 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               16               306 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               317 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               317 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                9               313 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                9               313 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              125               197 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              125               197 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               21               301 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               21               301 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               78               244 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               78               244 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               51               271 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               51               271 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10               312 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               10               312 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               62               260 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               62               260 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19               303 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19               303 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               21               301 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               21               301 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5               317 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5               317 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9               313 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9               313 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               70               252 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               70               252 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                6               316 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                6               316 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               89               233 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               89               233 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               31               291 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               31               291 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                47                275 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                47                275 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                26                296 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                26                296 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                41                281 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                41                281 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                62                260 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                62                260 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                310 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                310 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                314 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 8                314 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                65                257 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                65                257 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                16                306 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                16                306 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                23                299 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                23                299 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                12                310 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                12                310 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                26                296 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                26                296 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                45                277 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                45                277 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 5                317 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 5                317 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                29                293 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                29                293 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                91                231 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                91                231 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                27                295 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                27                295 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                20                302 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                20                302 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                21                301 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                21                301 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                10                312 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                10                312 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                57                265 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                57                265 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                25                297 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                25                297 
[1] "Xq loss mutation analysis"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                8               314 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                8               314 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 8 rows and 322 columns.

Variable 1:'CN_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "RPPA_CNMF"            
[4] "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL"
[7] "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 322 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=7, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=8, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, multiclass
D1V2, multiclass
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                76
  CLUS_2               2                80
  CLUS_3               4                41
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5               105
  CLUS_2               3                77
  CLUS_3               1                15
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               8               110
  CLUS_2               1                90
  CLUS_3               3                87
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                82
  CLUS_3               8               112
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               3                98
  CLUS_2               6               121
  CLUS_3               3                90
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               9               172
  CLUS_2               3               127
  CLUS_3               0                10

Clustering(2) Variable = 1q gain mutation analysis
D2V1, multiclass
D2V2, multiclass
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              12                67
  CLUS_2              11                71
  CLUS_3               6                39
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              20                90
  CLUS_2               8                72
  CLUS_3               1                15
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              23                95
  CLUS_2               9                82
  CLUS_3               5                85
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               9                86
  CLUS_2               4                80
  CLUS_3              24                96
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               6                95
  CLUS_2              25               102
  CLUS_3              10                83
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              29               152
  CLUS_2              11               119
  CLUS_3               1                 9

Clustering(3) Variable = 2p gain mutation analysis
D3V1, multiclass
D3V2, multiclass
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              10                69
  CLUS_2               8                74
  CLUS_3               6                39
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              13                97
  CLUS_2              10                70
  CLUS_3               1                15
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              17               101
  CLUS_2              10                81
  CLUS_3               3                87
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              10                85
  CLUS_2               3                81
  CLUS_3              17               103
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                94
  CLUS_2              15               112
  CLUS_3               7                86
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              18               163
  CLUS_2              10               120
  CLUS_3               1                 9

Clustering(4) Variable = 2q gain mutation analysis
D4V1, multiclass
D4V2, multiclass
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                72
  CLUS_2               6                76
  CLUS_3               4                41
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               9               101
  CLUS_2               7                73
  CLUS_3               1                15
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              10               108
  CLUS_2               8                83
  CLUS_3               2                88
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               8                87
  CLUS_2               2                82
  CLUS_3              10               110
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               5                96
  CLUS_2               9               118
  CLUS_3               5                88
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              10               171
  CLUS_2               8               122
  CLUS_3               1                 9

Clustering(5) Variable = 3p gain mutation analysis
D5V1, multiclass
D5V2, multiclass
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               8                71
  CLUS_2               5                77
  CLUS_3               3                42
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              12                98
  CLUS_2               3                77
  CLUS_3               1                15
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              19                99
  CLUS_2               4                87
  CLUS_3               3                87
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                92
  CLUS_2               4                80
  CLUS_3              19               101
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                97
  CLUS_2              19               108
  CLUS_3               4                89
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              21               160
  CLUS_2               6               124
  CLUS_3               0                10

Clustering(6) Variable = 3q gain mutation analysis
D6V1, multiclass
D6V2, multiclass
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              27                52
  CLUS_2              33                49
  CLUS_3              11                34
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              44                66
  CLUS_2              21                59
  CLUS_3               6                10
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              50                68
  CLUS_2              25                66
  CLUS_3              22                68
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              25                70
  CLUS_2              19                65
  CLUS_3              53                67
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              24                77
  CLUS_2              57                70
  CLUS_3              23                70
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              65               116
  CLUS_2              38                92
  CLUS_3               1                 9

Clustering(7) Variable = 4p gain mutation analysis
D7V1, multiclass
D7V2, multiclass
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                77
  CLUS_2               5                77
  CLUS_3               4                41
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               6               104
  CLUS_2               4                76
  CLUS_3               1                15
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2               116
  CLUS_2               6                85
  CLUS_3               5                85
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               7                88
  CLUS_2               3                81
  CLUS_3               3               117
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               6                95
  CLUS_2               3               124
  CLUS_3               4                89
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               5               176
  CLUS_2               8               122
  CLUS_3               0                10

Clustering(8) Variable = 4q gain mutation analysis
D8V1, multiclass
D8V2, multiclass
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                78
  CLUS_2               3                79
  CLUS_3               3                42
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4               106
  CLUS_2               3                77
  CLUS_3               0                16
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2               116
  CLUS_2               4                87
  CLUS_3               3                87
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                93
  CLUS_2               4                80
  CLUS_3               3               117
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               3                98
  CLUS_2               3               124
  CLUS_3               3                90
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               4               177
  CLUS_2               5               125
  CLUS_3               0                10

Clustering(9) Variable = 5p gain mutation analysis
D9V1, multiclass
D9V2, multiclass
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              21                58
  CLUS_2              17                65
  CLUS_3               9                36
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              22                88
  CLUS_2              21                59
  CLUS_3               4                12
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              32                86
  CLUS_2              25                66
  CLUS_3              18                72
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              22                73
  CLUS_2              18                66
  CLUS_3              35                85
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              23                78
  CLUS_2              35                92
  CLUS_3              23                70
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              49               132
  CLUS_2              31                99
  CLUS_3               1                 9

Clustering(10) Variable = 5q gain mutation analysis
D10V1, multiclass
D10V2, multiclass
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               5                74
  CLUS_2               5                77
  CLUS_3               4                41
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8               102
  CLUS_2               6                74
  CLUS_3               0                16
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              12               106
  CLUS_2               7                84
  CLUS_3               8                82
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                88
  CLUS_2               6                78
  CLUS_3              14               106
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               8                93
  CLUS_2              12               115
  CLUS_3               8                85
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              20               161
  CLUS_2               8               122
  CLUS_3               0                10

Clustering(11) Variable = 6p gain mutation analysis
D11V1, multiclass
D11V2, multiclass
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                74
  CLUS_2               8                74
  CLUS_3               4                41
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              11                99
  CLUS_2               6                74
  CLUS_3               0                16
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              10               108
  CLUS_2               9                82
  CLUS_3               7                83
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               9                86
  CLUS_2               6                78
  CLUS_3              11               109
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7                94
  CLUS_2              11               116
  CLUS_3               7                86
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              15               166
  CLUS_2              10               120
  CLUS_3               0                10

Clustering(12) Variable = 6q gain mutation analysis
D12V1, multiclass
D12V2, multiclass
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5                74
  CLUS_2               4                78
  CLUS_3               5                40
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               8               102
  CLUS_2               6                74
  CLUS_3               0                16
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               6               112
  CLUS_2               6                85
  CLUS_3               7                83
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5                90
  CLUS_2               8                76
  CLUS_3               6               114
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               6                95
  CLUS_2               8               119
  CLUS_3               4                89
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              12               169
  CLUS_2               6               124
  CLUS_3               0                10

Clustering(13) Variable = 7p gain mutation analysis
D13V1, multiclass
D13V2, multiclass
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              20                59
  CLUS_2              18                64
  CLUS_3              10                35
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              25                85
  CLUS_2              20                60
  CLUS_3               3                13
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              25                93
  CLUS_2              22                69
  CLUS_3              21                69
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              21                74
  CLUS_2              18                66
  CLUS_3              29                91
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              22                79
  CLUS_2              32                95
  CLUS_3              17                76
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              43               138
  CLUS_2              25               105
  CLUS_3               3                 7

Clustering(14) Variable = 7q gain mutation analysis
D14V1, multiclass
D14V2, multiclass
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              13                66
  CLUS_2              15                67
  CLUS_3               6                39
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              20                90
  CLUS_2              12                68
  CLUS_3               2                14
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              21                97
  CLUS_2              12                79
  CLUS_3               9                81
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              11                84
  CLUS_2               8                76
  CLUS_3              23                97
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              11                90
  CLUS_2              24               103
  CLUS_3              10                83
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              27               154
  CLUS_2              15               115
  CLUS_3               3                 7

Clustering(15) Variable = 8p gain mutation analysis
D15V1, multiclass
D15V2, multiclass
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              11                68
  CLUS_2              13                69
  CLUS_3               9                36
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              20                90
  CLUS_2              13                67
  CLUS_3               0                16
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              23                95
  CLUS_2              12                79
  CLUS_3              12                78
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              11                84
  CLUS_2              13                71
  CLUS_3              23                97
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                89
  CLUS_2              24               103
  CLUS_3              12                81
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              33               148
  CLUS_2              14               116
  CLUS_3               1                 9

Clustering(16) Variable = 8q gain mutation analysis
D16V1, multiclass
D16V2, multiclass
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              34                45
  CLUS_2              31                51
  CLUS_3              19                26
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              47                63
  CLUS_2              33                47
  CLUS_3               4                12
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              45                73
  CLUS_2              41                50
  CLUS_3              35                55
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              42                53
  CLUS_2              32                52
  CLUS_3              47                73
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              40                61
  CLUS_2              47                80
  CLUS_3              41                52
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              63               118
  CLUS_2              60                70
  CLUS_3               5                 5

Clustering(17) Variable = 9p gain mutation analysis
D17V1, multiclass
D17V2, multiclass
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              14                65
  CLUS_2               8                74
  CLUS_3               6                39
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              12                98
  CLUS_2              14                66
  CLUS_3               2                14
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              10               108
  CLUS_2              10                81
  CLUS_3              14                76
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              10                85
  CLUS_2              12                72
  CLUS_3              12               108
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              15                86
  CLUS_2              12               115
  CLUS_3              11                82
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              21               160
  CLUS_2              16               114
  CLUS_3               1                 9

Clustering(18) Variable = 9q gain mutation analysis
D18V1, multiclass
D18V2, multiclass
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              16                63
  CLUS_2              10                72
  CLUS_3               8                37
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              16                94
  CLUS_2              17                63
  CLUS_3               1                15
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              15               103
  CLUS_2              10                81
  CLUS_3              16                74
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               9                86
  CLUS_2              16                68
  CLUS_3              16               104
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              20                81
  CLUS_2              15               112
  CLUS_3              12                81
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              29               152
  CLUS_2              16               114
  CLUS_3               2                 8

Clustering(19) Variable = 10p gain mutation analysis
D19V1, multiclass
D19V2, multiclass
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                4                 75
  CLUS_2                1                 81
  CLUS_3                3                 42
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                105
  CLUS_2                2                 78
  CLUS_3                1                 15
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                9                109
  CLUS_2                2                 89
  CLUS_3                1                 89
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 83
  CLUS_3                9                111
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                4                 97
  CLUS_2                7                120
  CLUS_3                1                 92
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               10                171
  CLUS_2                2                128
  CLUS_3                0                 10

Clustering(20) Variable = 10q gain mutation analysis
D20V1, multiclass
D20V2, multiclass
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 76
  CLUS_2                1                 81
  CLUS_3                1                 44
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                108
  CLUS_2                3                 77
  CLUS_3                0                 16
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                116
  CLUS_2                2                 89
  CLUS_3                2                 88
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                2                 82
  CLUS_3                2                118
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 98
  CLUS_2                2                125
  CLUS_3                1                 92
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                178
  CLUS_2                3                127
  CLUS_3                0                 10

Clustering(21) Variable = 11p gain mutation analysis
D21V1, multiclass
D21V2, multiclass
D21V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 75
  CLUS_2                5                 77
  CLUS_3                2                 43
D21V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                6                104
  CLUS_2                3                 77
  CLUS_3                2                 14
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                113
  CLUS_2                4                 87
  CLUS_3                6                 84
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                5                 79
  CLUS_3                5                115
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                 97
  CLUS_2                7                120
  CLUS_3                5                 88
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                8                173
  CLUS_2                8                122
  CLUS_3                0                 10

Clustering(22) Variable = 11q gain mutation analysis
D22V1, multiclass
D22V2, multiclass
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 76
  CLUS_2                6                 76
  CLUS_3                2                 43
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                104
  CLUS_2                4                 76
  CLUS_3                1                 15
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                114
  CLUS_2                3                 88
  CLUS_3                8                 82
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 91
  CLUS_2                7                 77
  CLUS_3                4                116
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                 95
  CLUS_2                7                120
  CLUS_3                3                 90
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                172
  CLUS_2                7                123
  CLUS_3                0                 10

Clustering(23) Variable = 12p gain mutation analysis
D23V1, multiclass
D23V2, multiclass
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               16                 63
  CLUS_2               17                 65
  CLUS_3                8                 37
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               20                 90
  CLUS_2               17                 63
  CLUS_3                4                 12
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               35                 83
  CLUS_2               14                 77
  CLUS_3               11                 79
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               14                 81
  CLUS_2                9                 75
  CLUS_3               37                 83
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               12                 89
  CLUS_2               39                 88
  CLUS_3               10                 83
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               42                139
  CLUS_2               17                113
  CLUS_3                2                  8

Clustering(24) Variable = 12q gain mutation analysis
D24V1, multiclass
D24V2, multiclass
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                7                 72
  CLUS_2                8                 74
  CLUS_3                4                 41
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               12                 98
  CLUS_2                5                 75
  CLUS_3                2                 14
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               16                102
  CLUS_2                5                 86
  CLUS_3                4                 86
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 91
  CLUS_2                2                 82
  CLUS_3               19                101
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                 97
  CLUS_2               18                109
  CLUS_3                3                 90
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               20                161
  CLUS_2                5                125
  CLUS_3                0                 10

Clustering(25) Variable = 13q gain mutation analysis
D25V1, multiclass
D25V2, multiclass
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                5                 74
  CLUS_2                6                 76
  CLUS_3                0                 45
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                103
  CLUS_2                4                 76
  CLUS_3                0                 16
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                5                113
  CLUS_2                7                 84
  CLUS_3                5                 85
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                5                 79
  CLUS_3                6                114
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 98
  CLUS_2                7                120
  CLUS_3                6                 87
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                174
  CLUS_2                8                122
  CLUS_3                1                  9

Clustering(26) Variable = 14q gain mutation analysis
D26V1, multiclass
D26V2, multiclass
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               15                 64
  CLUS_2               10                 72
  CLUS_3               11                 34
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               19                 91
  CLUS_2               17                 63
  CLUS_3                0                 16
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               12                106
  CLUS_2               21                 70
  CLUS_3               18                 72
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               17                 78
  CLUS_2               21                 63
  CLUS_3               13                107
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               24                 77
  CLUS_2               13                114
  CLUS_3               14                 79
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               23                158
  CLUS_2               25                105
  CLUS_3                3                  7

Clustering(27) Variable = 15q gain mutation analysis
D27V1, multiclass
D27V2, multiclass
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 76
  CLUS_2                3                 79
  CLUS_3                2                 43
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                107
  CLUS_2                4                 76
  CLUS_3                1                 15
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                4                114
  CLUS_2                5                 86
  CLUS_3                4                 86
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                7                 77
  CLUS_3                4                116
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 95
  CLUS_2                5                122
  CLUS_3                2                 91
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                8                173
  CLUS_2                4                126
  CLUS_3                1                  9

Clustering(28) Variable = 16p gain mutation analysis
D28V1, multiclass
D28V2, multiclass
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 77
  CLUS_2                5                 77
  CLUS_3                7                 38
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               11                 99
  CLUS_2                2                 78
  CLUS_3                1                 15
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                5                113
  CLUS_2                6                 85
  CLUS_3                9                 81
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                7                 88
  CLUS_2                5                 79
  CLUS_3                8                112
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                7                 94
  CLUS_2                9                118
  CLUS_3                4                 89
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               11                170
  CLUS_2                8                122
  CLUS_3                1                  9

Clustering(29) Variable = 16q gain mutation analysis
D29V1, multiclass
D29V2, multiclass
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                5                 74
  CLUS_2                8                 74
  CLUS_3                6                 39
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               10                100
  CLUS_2                8                 72
  CLUS_3                1                 15
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                114
  CLUS_2               12                 79
  CLUS_3                9                 81
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               10                 85
  CLUS_2                8                 76
  CLUS_3                7                113
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                8                 93
  CLUS_2                9                118
  CLUS_3               10                 83
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               10                171
  CLUS_2               16                114
  CLUS_3                1                  9

Clustering(30) Variable = 17p gain mutation analysis
D30V1, multiclass
D30V2, multiclass
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                5                 74
  CLUS_2                6                 76
  CLUS_3                4                 41
D30V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                7                103
  CLUS_2                8                 72
  CLUS_3                0                 16
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                109
  CLUS_2                7                 84
  CLUS_3                2                 88
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                3                 81
  CLUS_3                9                111
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 98
  CLUS_2               10                117
  CLUS_3                5                 88
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                8                173
  CLUS_2               10                120
  CLUS_3                0                 10

Clustering(31) Variable = 17q gain mutation analysis
D31V1, multiclass
D31V2, multiclass
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                 76
  CLUS_2                7                 75
  CLUS_3                5                 40
D31V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               10                100
  CLUS_2                5                 75
  CLUS_3                0                 16
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               12                106
  CLUS_2                4                 87
  CLUS_3                4                 86
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                2                 82
  CLUS_3               13                107
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                5                 96
  CLUS_2               13                114
  CLUS_3                5                 88
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               14                167
  CLUS_2                8                122
  CLUS_3                1                  9

Clustering(32) Variable = 18p gain mutation analysis
D32V1, multiclass
D32V2, multiclass
D32V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               13                 66
  CLUS_2               12                 70
  CLUS_3                6                 39
D32V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               21                 89
  CLUS_2                9                 71
  CLUS_3                1                 15
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               26                 92
  CLUS_2               14                 77
  CLUS_3               10                 80
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               15                 80
  CLUS_2                6                 78
  CLUS_3               29                 91
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               16                 85
  CLUS_2               24                103
  CLUS_3               12                 81
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               33                148
  CLUS_2               17                113
  CLUS_3                2                  8

Clustering(33) Variable = 18q gain mutation analysis
D33V1, multiclass
D33V2, multiclass
D33V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                 73
  CLUS_2                5                 77
  CLUS_3                0                 45
D33V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                104
  CLUS_2                3                 77
  CLUS_3                2                 14
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               12                106
  CLUS_2                7                 84
  CLUS_3                1                 89
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                1                 83
  CLUS_3               13                107
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                100
  CLUS_2               13                114
  CLUS_3                6                 87
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               12                169
  CLUS_2                8                122
  CLUS_3                0                 10

Clustering(34) Variable = 19p gain mutation analysis
D34V1, multiclass
D34V2, multiclass
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                 77
  CLUS_2                1                 81
  CLUS_3                3                 42
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                6                104
  CLUS_2                0                 80
  CLUS_3                0                 16
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                7                111
  CLUS_2                2                 89
  CLUS_3                2                 88
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 83
  CLUS_3                9                111
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                 99
  CLUS_2                8                119
  CLUS_3                2                 91
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               10                171
  CLUS_2                2                128
  CLUS_3                0                 10

Clustering(35) Variable = 19q gain mutation analysis
D35V1, multiclass
D35V2, multiclass
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                6                 73
  CLUS_2                6                 76
  CLUS_3                2                 43
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               10                100
  CLUS_2                4                 76
  CLUS_3                0                 16
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               12                106
  CLUS_2                6                 85
  CLUS_3                3                 87
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                4                 80
  CLUS_3               12                108
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                 97
  CLUS_2               12                115
  CLUS_3                5                 88
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               15                166
  CLUS_2                6                124
  CLUS_3                0                 10

Clustering(36) Variable = 20p gain mutation analysis
D36V1, multiclass
D36V2, multiclass
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               14                 65
  CLUS_2               23                 59
  CLUS_3               10                 35
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               31                 79
  CLUS_2               13                 67
  CLUS_3                3                 13
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               22                 96
  CLUS_2               22                 69
  CLUS_3               19                 71
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               24                 71
  CLUS_2               14                 70
  CLUS_3               25                 95
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               17                 84
  CLUS_2               29                 98
  CLUS_3               19                 74
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               34                147
  CLUS_2               29                101
  CLUS_3                2                  8

Clustering(37) Variable = 20q gain mutation analysis
D37V1, multiclass
D37V2, multiclass
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               20                 59
  CLUS_2               22                 60
  CLUS_3               10                 35
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               30                 80
  CLUS_2               19                 61
  CLUS_3                3                 13
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               23                 95
  CLUS_2               24                 67
  CLUS_3               21                 69
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               24                 71
  CLUS_2               18                 66
  CLUS_3               26                 94
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               21                 80
  CLUS_2               28                 99
  CLUS_3               20                 73
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               35                146
  CLUS_2               31                 99
  CLUS_3                3                  7

Clustering(38) Variable = 21q gain mutation analysis
D38V1, multiclass
D38V2, multiclass
D38V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 77
  CLUS_2                2                 80
  CLUS_3                0                 45
D38V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                108
  CLUS_2                2                 78
  CLUS_3                0                 16
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                7                111
  CLUS_2                1                 90
  CLUS_3                0                 90
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                2                 82
  CLUS_3                6                114
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 99
  CLUS_2                6                121
  CLUS_3                1                 92
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                6                175
  CLUS_2                3                127
  CLUS_3                0                 10

Clustering(39) Variable = 22q gain mutation analysis
D39V1, multiclass
D39V2, multiclass
D39V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                7                 72
  CLUS_2               12                 70
  CLUS_3                5                 40
D39V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               14                 96
  CLUS_2                7                 73
  CLUS_3                3                 13
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               20                 98
  CLUS_2               12                 79
  CLUS_3                6                 84
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               13                 82
  CLUS_2                4                 80
  CLUS_3               21                 99
D39V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                8                 93
  CLUS_2               19                108
  CLUS_3               12                 81
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               23                158
  CLUS_2               14                116
  CLUS_3                2                  8

Clustering(40) Variable = Xq gain mutation analysis
D40V1, multiclass
D40V2, multiclass
D40V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7                72
  CLUS_2               3                79
  CLUS_3               5                40
D40V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5               105
  CLUS_2               8                72
  CLUS_3               2                14
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7               111
  CLUS_2               9                82
  CLUS_3               4                86
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                87
  CLUS_2               5                79
  CLUS_3               7               113
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7                94
  CLUS_2               8               119
  CLUS_3               6                87
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              11               170
  CLUS_2              10               120
  CLUS_3               0                10

Clustering(41) Variable = 1p loss mutation analysis
D41V1, multiclass
D41V2, multiclass
D41V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               4                75
  CLUS_2               9                73
  CLUS_3               1                44
D41V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              10               100
  CLUS_2               2                78
  CLUS_3               2                14
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12               106
  CLUS_2               3                88
  CLUS_3               1                89
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                83
  CLUS_3              12               108
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               2                99
  CLUS_2              11               116
  CLUS_3               3                90
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12               169
  CLUS_2               4               126
  CLUS_3               0                10

Clustering(42) Variable = 2p loss mutation analysis
D42V1, multiclass
D42V2, multiclass
D42V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                77
  CLUS_2               0                82
  CLUS_3               2                43
D42V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2               108
  CLUS_2               2                78
  CLUS_3               0                16
D42V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1               117
  CLUS_2               0                91
  CLUS_3               4                86
D42V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                95
  CLUS_2               4                80
  CLUS_3               1               119
D42V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4                97
  CLUS_2               1               126
  CLUS_3               0                93
D42V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5               176
  CLUS_2               0               130
  CLUS_3               0                10

Clustering(43) Variable = 2q loss mutation analysis
D43V1, multiclass
D43V2, multiclass
D43V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                78
  CLUS_2               0                82
  CLUS_3               2                43
D43V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               3               107
  CLUS_2               0                80
  CLUS_3               0                16
D43V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               7               111
  CLUS_2               0                91
  CLUS_3               2                88
D43V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               0                95
  CLUS_2               2                82
  CLUS_3               7               113
D43V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               3                98
  CLUS_2               6               121
  CLUS_3               0                93
D43V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               8               173
  CLUS_2               0               130
  CLUS_3               1                 9

Clustering(44) Variable = 3p loss mutation analysis
D44V1, multiclass
D44V2, multiclass
D44V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              29                50
  CLUS_2              34                48
  CLUS_3              20                25
D44V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              43                67
  CLUS_2              34                46
  CLUS_3               6                10
D44V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              49                69
  CLUS_2              30                61
  CLUS_3              38                52
D44V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              32                63
  CLUS_2              30                54
  CLUS_3              55                65
D44V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              46                55
  CLUS_2              52                75
  CLUS_3              27                66
D44V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              74               107
  CLUS_2              46                84
  CLUS_3               5                 5

Clustering(45) Variable = 3q loss mutation analysis
D45V1, multiclass
D45V2, multiclass
D45V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               4                75
  CLUS_2               4                78
  CLUS_3               4                41
D45V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6               104
  CLUS_2               4                76
  CLUS_3               2                14
D45V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7               111
  CLUS_2               7                84
  CLUS_3               7                83
D45V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               6                89
  CLUS_2               6                78
  CLUS_3               9               111
D45V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              10                91
  CLUS_2               8               119
  CLUS_3               3                90
D45V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              13               168
  CLUS_2               7               123
  CLUS_3               1                 9

Clustering(46) Variable = 4p loss mutation analysis
D46V1, multiclass
D46V2, multiclass
D46V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              20                59
  CLUS_2              22                60
  CLUS_3               7                38
D46V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              24                86
  CLUS_2              18                62
  CLUS_3               7                 9
D46V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              40                78
  CLUS_2              20                71
  CLUS_3              13                77
D46V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              20                75
  CLUS_2              10                74
  CLUS_3              43                77
D46V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              20                81
  CLUS_2              46                81
  CLUS_3              12                81
D46V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              52               129
  CLUS_2              24               106
  CLUS_3               2                 8

Clustering(47) Variable = 4q loss mutation analysis
D47V1, multiclass
D47V2, multiclass
D47V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              12                67
  CLUS_2              17                65
  CLUS_3               5                40
D47V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              18                92
  CLUS_2              11                69
  CLUS_3               5                11
D47V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              28                90
  CLUS_2              11                80
  CLUS_3              10                80
D47V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              11                84
  CLUS_2               8                76
  CLUS_3              30                90
D47V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              13                88
  CLUS_2              31                96
  CLUS_3               7                86
D47V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              37               144
  CLUS_2              13               117
  CLUS_3               1                 9

Clustering(48) Variable = 5p loss mutation analysis
D48V1, multiclass
D48V2, multiclass
D48V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                77
  CLUS_2               4                78
  CLUS_3               2                43
D48V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5               105
  CLUS_2               3                77
  CLUS_3               0                16
D48V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6               112
  CLUS_2               3                88
  CLUS_3               1                89
D48V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                83
  CLUS_3               6               114
D48V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1               100
  CLUS_2               8               119
  CLUS_3               1                92
D48V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6               175
  CLUS_2               4               126
  CLUS_3               0                10

Clustering(49) Variable = 5q loss mutation analysis
D49V1, multiclass
D49V2, multiclass
D49V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              11                68
  CLUS_2              23                59
  CLUS_3               6                39
D49V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              22                88
  CLUS_2              13                67
  CLUS_3               5                11
D49V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              34                84
  CLUS_2              16                75
  CLUS_3              11                79
D49V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              17                78
  CLUS_2               6                78
  CLUS_3              38                82
D49V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              14                87
  CLUS_2              36                91
  CLUS_3              12                81
D49V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              36               145
  CLUS_2              23               107
  CLUS_3               3                 7

Clustering(50) Variable = 6p loss mutation analysis
D50V1, multiclass
D50V2, multiclass
D50V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               3                76
  CLUS_2               9                73
  CLUS_3               1                44
D50V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               9               101
  CLUS_2               2                78
  CLUS_3               2                14
D50V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              13               105
  CLUS_2               4                87
  CLUS_3               2                88
D50V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               3                92
  CLUS_2               4                80
  CLUS_3              12               108
D50V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               2                99
  CLUS_2              13               114
  CLUS_3               4                89
D50V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              14               167
  CLUS_2               4               126
  CLUS_3               1                 9

Clustering(51) Variable = 6q loss mutation analysis
D51V1, multiclass
D51V2, multiclass
D51V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                78
  CLUS_2               8                74
  CLUS_3               3                42
D51V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              10               100
  CLUS_2               1                79
  CLUS_3               1                15
D51V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              11               107
  CLUS_2               4                87
  CLUS_3               6                84
D51V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               4                91
  CLUS_2               6                78
  CLUS_3              11               109
D51V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                96
  CLUS_2              13               114
  CLUS_3               3                90
D51V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              16               165
  CLUS_2               4               126
  CLUS_3               1                 9

Clustering(52) Variable = 7p loss mutation analysis
D52V1, multiclass
D52V2, multiclass
D52V3, multiclass
[1] "Remove cluster labels:" "7P LOSS MUTATED"       
clus
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                2               204 
       TCGA-BA-4074        TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5152        TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5557        TCGA-BA-5559        TCGA-BA-6869        TCGA-BA-6870 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873        TCGA-BB-4217 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6224        TCGA-CQ-6225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7243        TCGA-CV-7245 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407        TCGA-CV-7410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7411        TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7416        TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7423        TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7428        TCGA-CV-7429        TCGA-CV-7432        TCGA-CV-7433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-IQ-7630        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
D52V4, multiclass
[1] "Remove cluster labels:" "7P LOSS MUTATED"       
clus
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                2               204 
       TCGA-BA-4074        TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5152        TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5557        TCGA-BA-5559        TCGA-BA-6869        TCGA-BA-6870 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873        TCGA-BB-4217 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4722        TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4727        TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4731        TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4737        TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4741        TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5358        TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5364        TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5369        TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6010        TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6016        TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6020        TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6024        TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6994        TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6998        TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5326        TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5331        TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6220        TCGA-CQ-6221        TCGA-CQ-6224        TCGA-CQ-6225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CV-5430        TCGA-CV-5431        TCGA-CV-5432 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5434        TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5441        TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5966        TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5976        TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6003        TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6933        TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6937        TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6941        TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6948        TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6953        TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6959        TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7089        TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7097        TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7102        TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7178        TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7236        TCGA-CV-7238        TCGA-CV-7243        TCGA-CV-7245 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7247        TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7253        TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7263        TCGA-CV-7406        TCGA-CV-7407        TCGA-CV-7410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7411        TCGA-CV-7413        TCGA-CV-7414        TCGA-CV-7415 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7416        TCGA-CV-7418        TCGA-CV-7421        TCGA-CV-7422 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7423        TCGA-CV-7424        TCGA-CV-7425        TCGA-CV-7427 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7428        TCGA-CV-7429        TCGA-CV-7432        TCGA-CV-7433 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7434        TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7440        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-7591        TCGA-DQ-7592        TCGA-IQ-7630        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
D52V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3               115
  CLUS_2               2                89
  CLUS_3               0                90
D52V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                84
  CLUS_3               3               117
D52V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0               101
  CLUS_2               5               122
  CLUS_3               0                93
D52V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               3               178
  CLUS_2               2               128
  CLUS_3               0                10

Clustering(53) Variable = 7q loss mutation analysis
D53V1, multiclass
D53V2, multiclass
D53V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                78
  CLUS_2               2                80
  CLUS_3               1                44
D53V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3               107
  CLUS_2               1                79
  CLUS_3               0                16
D53V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4               114
  CLUS_2               1                90
  CLUS_3               4                86
D53V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                82
  CLUS_3               5               115
D53V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               5                96
  CLUS_2               4               123
  CLUS_3               0                93
D53V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               7               174
  CLUS_2               1               129
  CLUS_3               1                 9

Clustering(54) Variable = 8p loss mutation analysis
D54V1, multiclass
D54V2, multiclass
D54V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              18                61
  CLUS_2              18                64
  CLUS_3               9                36
D54V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              24                86
  CLUS_2              18                62
  CLUS_3               3                13
D54V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              22                96
  CLUS_2              21                70
  CLUS_3              19                71
D54V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              23                72
  CLUS_2              17                67
  CLUS_3              22                98
D54V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              29                72
  CLUS_2              23               104
  CLUS_3              18                75
D54V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              35               146
  CLUS_2              34                96
  CLUS_3               1                 9

Clustering(55) Variable = 8q loss mutation analysis
D55V1, multiclass
D55V2, multiclass
D55V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                77
  CLUS_2               3                79
  CLUS_3               0                45
D55V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2               108
  CLUS_2               3                77
  CLUS_3               0                16
D55V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2               116
  CLUS_2               2                89
  CLUS_3               2                88
D55V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                94
  CLUS_2               3                81
  CLUS_3               2               118
D55V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               2                99
  CLUS_2               3               124
  CLUS_3               1                92
D55V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4               177
  CLUS_2               2               128
  CLUS_3               0                10

Clustering(56) Variable = 9p loss mutation analysis
D56V1, multiclass
D56V2, multiclass
D56V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              19                60
  CLUS_2              28                54
  CLUS_3              13                32
D56V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              33                77
  CLUS_2              23                57
  CLUS_3               4                12
D56V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              38                80
  CLUS_2              20                71
  CLUS_3              26                64
D56V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              19                76
  CLUS_2              23                61
  CLUS_3              42                78
D56V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              30                71
  CLUS_2              45                82
  CLUS_3              14                79
D56V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              55               126
  CLUS_2              29               101
  CLUS_3               5                 5

Clustering(57) Variable = 9q loss mutation analysis
D57V1, multiclass
D57V2, multiclass
D57V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               6                73
  CLUS_2               8                74
  CLUS_3               5                40
D57V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              10               100
  CLUS_2               9                71
  CLUS_3               0                16
D57V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              10               108
  CLUS_2              10                81
  CLUS_3               9                81
D57V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               9                86
  CLUS_2               7                77
  CLUS_3              13               107
D57V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              10                91
  CLUS_2              14               113
  CLUS_3               7                86
D57V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              16               165
  CLUS_2              10               120
  CLUS_3               5                 5

Clustering(58) Variable = 10p loss mutation analysis
D58V1, multiclass
D58V2, multiclass
D58V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               16                 63
  CLUS_2               13                 69
  CLUS_3                6                 39
D58V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               16                 94
  CLUS_2               17                 63
  CLUS_3                2                 14
D58V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               19                 99
  CLUS_2               12                 79
  CLUS_3               13                 77
D58V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               13                 82
  CLUS_2               11                 73
  CLUS_3               20                100
D58V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               16                 85
  CLUS_2               22                105
  CLUS_3                9                 84
D58V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               31                150
  CLUS_2               15                115
  CLUS_3                1                  9

Clustering(59) Variable = 10q loss mutation analysis
D59V1, multiclass
D59V2, multiclass
D59V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                7                 72
  CLUS_2                6                 76
  CLUS_3                3                 42
D59V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                8                102
  CLUS_2                8                 72
  CLUS_3                0                 16
D59V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               16                102
  CLUS_2                6                 85
  CLUS_3                3                 87
D59V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                1                 83
  CLUS_3               18                102
D59V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                5                 96
  CLUS_2               18                109
  CLUS_3                3                 90
D59V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               18                163
  CLUS_2                7                123
  CLUS_3                1                  9

Clustering(60) Variable = 11p loss mutation analysis
D60V1, multiclass
D60V2, multiclass
D60V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               10                 69
  CLUS_2               12                 70
  CLUS_3                4                 41
D60V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               14                 96
  CLUS_2               11                 69
  CLUS_3                1                 15
D60V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               24                 94
  CLUS_2                9                 82
  CLUS_3                4                 86
D60V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                7                 88
  CLUS_2                6                 78
  CLUS_3               24                 96
D60V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                9                 92
  CLUS_2               24                103
  CLUS_3                8                 85
D60V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               27                154
  CLUS_2               13                117
  CLUS_3                1                  9

Clustering(61) Variable = 11q loss mutation analysis
D61V1, multiclass
D61V2, multiclass
D61V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               15                 64
  CLUS_2               15                 67
  CLUS_3                7                 38
D61V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               17                 93
  CLUS_2               17                 63
  CLUS_3                3                 13
D61V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               31                 87
  CLUS_2               18                 73
  CLUS_3                9                 81
D61V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               16                 79
  CLUS_2               11                 73
  CLUS_3               31                 89
D61V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               22                 79
  CLUS_2               27                100
  CLUS_3               13                 80
D61V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               36                145
  CLUS_2               25                105
  CLUS_3                1                  9

Clustering(62) Variable = 12p loss mutation analysis
D62V1, multiclass
D62V2, multiclass
D62V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                 75
  CLUS_2                1                 81
  CLUS_3                2                 43
D62V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                108
  CLUS_2                5                 75
  CLUS_3                0                 16
D62V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                115
  CLUS_2                3                 88
  CLUS_3                5                 85
D62V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                5                 79
  CLUS_3                3                117
D62V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                 95
  CLUS_2                3                124
  CLUS_3                3                 90
D62V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                6                175
  CLUS_2                5                125
  CLUS_3                1                  9

Clustering(63) Variable = 12q loss mutation analysis
D63V1, multiclass
D63V2, multiclass
D63V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 77
  CLUS_2                1                 81
  CLUS_3                0                 45
D63V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                109
  CLUS_2                2                 78
  CLUS_3                0                 16
D63V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                116
  CLUS_2                1                 90
  CLUS_3                5                 85
D63V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                4                 80
  CLUS_3                3                117
D63V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                4                 97
  CLUS_2                2                125
  CLUS_3                2                 91
D63V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                5                176
  CLUS_2                1                129
  CLUS_3                2                  8

Clustering(64) Variable = 13q loss mutation analysis
D64V1, multiclass
D64V2, multiclass
D64V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               16                 63
  CLUS_2               18                 64
  CLUS_3                8                 37
D64V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               25                 85
  CLUS_2               14                 66
  CLUS_3                3                 13
D64V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               33                 85
  CLUS_2               16                 75
  CLUS_3               12                 78
D64V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               16                 79
  CLUS_2                6                 78
  CLUS_3               39                 81
D64V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               17                 84
  CLUS_2               35                 92
  CLUS_3               13                 80
D64V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               45                136
  CLUS_2               19                111
  CLUS_3                1                  9

Clustering(65) Variable = 14q loss mutation analysis
D65V1, multiclass
D65V2, multiclass
D65V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                4                 75
  CLUS_2                4                 78
  CLUS_3                0                 45
D65V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                4                106
  CLUS_2                3                 77
  CLUS_3                1                 15
D65V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               11                107
  CLUS_2                2                 89
  CLUS_3                1                 89
D65V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 83
  CLUS_3               11                109
D65V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                4                 97
  CLUS_2               10                117
  CLUS_3                2                 91
D65V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               12                169
  CLUS_2                4                126
  CLUS_3                0                 10

Clustering(66) Variable = 15q loss mutation analysis
D66V1, multiclass
D66V2, multiclass
D66V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                5                 74
  CLUS_2                9                 73
  CLUS_3                2                 43
D66V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                101
  CLUS_2                4                 76
  CLUS_3                3                 13
D66V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                8                110
  CLUS_2                9                 82
  CLUS_3                6                 84
D66V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               10                 85
  CLUS_2                4                 80
  CLUS_3                9                111
D66V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               10                 91
  CLUS_2                6                121
  CLUS_3                7                 86
D66V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               11                170
  CLUS_2               11                119
  CLUS_3                1                  9

Clustering(67) Variable = 16p loss mutation analysis
D67V1, multiclass
D67V2, multiclass
D67V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 79
  CLUS_2                4                 78
  CLUS_3                0                 45
D67V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                4                106
  CLUS_2                0                 80
  CLUS_3                0                 16
D67V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                8                110
  CLUS_2                1                 90
  CLUS_3                1                 89
D67V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                2                 82
  CLUS_3                8                112
D67V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                100
  CLUS_2                8                119
  CLUS_3                3                 90
D67V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                9                172
  CLUS_2                2                128
  CLUS_3                1                  9

Clustering(68) Variable = 16q loss mutation analysis
D68V1, multiclass
D68V2, multiclass
D68V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 76
  CLUS_2                8                 74
  CLUS_3                0                 45
D68V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               11                 99
  CLUS_2                0                 80
  CLUS_3                0                 16
D68V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               21                 97
  CLUS_2                1                 90
  CLUS_3                1                 89
D68V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                1                 83
  CLUS_3               22                 98
D68V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                6                 95
  CLUS_2               18                109
  CLUS_3                2                 91
D68V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               22                159
  CLUS_2                4                126
  CLUS_3                0                 10

Clustering(69) Variable = 17p loss mutation analysis
D69V1, multiclass
D69V2, multiclass
D69V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               13                 66
  CLUS_2                9                 73
  CLUS_3                7                 38
D69V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               14                 96
  CLUS_2               12                 68
  CLUS_3                3                 13
D69V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               20                 98
  CLUS_2               11                 80
  CLUS_3               12                 78
D69V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               12                 83
  CLUS_2                6                 78
  CLUS_3               25                 95
D69V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               14                 87
  CLUS_2               21                106
  CLUS_3               10                 83
D69V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               28                153
  CLUS_2               15                115
  CLUS_3                2                  8

Clustering(70) Variable = 17q loss mutation analysis
D70V1, multiclass
D70V2, multiclass
D70V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                 76
  CLUS_2                0                 82
  CLUS_3                0                 45
D70V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                109
  CLUS_2                2                 78
  CLUS_3                0                 16
D70V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                117
  CLUS_2                0                 91
  CLUS_3                3                 87
D70V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                2                 82
  CLUS_3                2                118
D70V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                 98
  CLUS_2                1                126
  CLUS_3                1                 92
D70V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                178
  CLUS_2                1                129
  CLUS_3                1                  9

Clustering(71) Variable = 18p loss mutation analysis
D71V1, multiclass
D71V2, multiclass
D71V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                 70
  CLUS_2                9                 73
  CLUS_3                3                 42
D71V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                101
  CLUS_2               11                 69
  CLUS_3                1                 15
D71V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               10                108
  CLUS_2                7                 84
  CLUS_3               11                 79
D71V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                7                 88
  CLUS_2                9                 75
  CLUS_3               12                108
D71V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                7                 94
  CLUS_2               16                111
  CLUS_3                6                 87
D71V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               18                163
  CLUS_2               10                120
  CLUS_3                1                  9

Clustering(72) Variable = 18q loss mutation analysis
D72V1, multiclass
D72V2, multiclass
D72V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               27                 52
  CLUS_2               21                 61
  CLUS_3               17                 28
D72V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               28                 82
  CLUS_2               32                 48
  CLUS_3                5                 11
D72V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               23                 95
  CLUS_2               27                 64
  CLUS_3               34                 56
D72V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               28                 67
  CLUS_2               27                 57
  CLUS_3               29                 91
D72V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               35                 66
  CLUS_2               28                 99
  CLUS_3               27                 66
D72V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               48                133
  CLUS_2               39                 91
  CLUS_3                3                  7

Clustering(73) Variable = 19p loss mutation analysis
D73V1, multiclass
D73V2, multiclass
D73V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                7                 72
  CLUS_2               10                 72
  CLUS_3                3                 42
D73V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               10                100
  CLUS_2                9                 71
  CLUS_3                1                 15
D73V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               10                108
  CLUS_2               12                 79
  CLUS_3                4                 86
D73V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               11                 84
  CLUS_2                5                 79
  CLUS_3               10                110
D73V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               11                 90
  CLUS_2               10                117
  CLUS_3                6                 87
D73V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               13                168
  CLUS_2               13                117
  CLUS_3                1                  9

Clustering(74) Variable = 19q loss mutation analysis
D74V1, multiclass
D74V2, multiclass
D74V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                8                 71
  CLUS_2                6                 76
  CLUS_3                2                 43
D74V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                7                103
  CLUS_2                7                 73
  CLUS_3                2                 14
D74V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                9                109
  CLUS_2                6                 85
  CLUS_3                4                 86
D74V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                5                 79
  CLUS_3                9                111
D74V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                6                 95
  CLUS_2               11                116
  CLUS_3                3                 90
D74V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               13                168
  CLUS_2                7                123
  CLUS_3                0                 10

Clustering(75) Variable = 20p loss mutation analysis
D75V1, multiclass
D75V2, multiclass
D75V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                6                 73
  CLUS_2                5                 77
  CLUS_3                1                 44
D75V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                7                103
  CLUS_2                5                 75
  CLUS_3                0                 16
D75V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                107
  CLUS_2                5                 86
  CLUS_3                3                 87
D75V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                2                 82
  CLUS_3               12                108
D75V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                8                 93
  CLUS_2               10                117
  CLUS_3                3                 90
D75V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               15                166
  CLUS_2                5                125
  CLUS_3                1                  9

Clustering(76) Variable = 20q loss mutation analysis
D76V1, multiclass
D76V2, multiclass
D76V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 77
  CLUS_2                3                 79
  CLUS_3                0                 45
D76V4, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                106
  CLUS_2                1                 79
  CLUS_3                0                 16
D76V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                111
  CLUS_2                2                 89
  CLUS_3                0                 90
D76V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                0                 84
  CLUS_3                7                113
D76V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 99
  CLUS_2                6                121
  CLUS_3                2                 91
D76V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                7                174
  CLUS_2                3                127
  CLUS_3                0                 10

Clustering(77) Variable = 21q loss mutation analysis
D77V1, multiclass
D77V2, multiclass
D77V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               14                 65
  CLUS_2               14                 68
  CLUS_3                9                 36
D77V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               18                 92
  CLUS_2               14                 66
  CLUS_3                5                 11
D77V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               21                 97
  CLUS_2               15                 76
  CLUS_3               17                 73
D77V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               14                 81
  CLUS_2               18                 66
  CLUS_3               21                 99
D77V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               19                 82
  CLUS_2               27                100
  CLUS_3               11                 82
D77V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               37                144
  CLUS_2               20                110
  CLUS_3                0                 10

Clustering(78) Variable = 22q loss mutation analysis
D78V1, multiclass
D78V2, multiclass
D78V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                 73
  CLUS_2                4                 78
  CLUS_3                5                 40
D78V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                8                102
  CLUS_2                6                 74
  CLUS_3                1                 15
D78V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                111
  CLUS_2                7                 84
  CLUS_3               10                 80
D78V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                9                 86
  CLUS_2                7                 77
  CLUS_3                8                112
D78V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               16                 85
  CLUS_2                6                121
  CLUS_3                3                 90
D78V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               14                167
  CLUS_2               10                120
  CLUS_3                1                  9

Clustering(79) Variable = Xq loss mutation analysis
D79V1, multiclass
D79V2, multiclass
D79V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                78
  CLUS_2               1                81
  CLUS_3               3                42
D79V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3               107
  CLUS_2               1                79
  CLUS_3               1                15
D79V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2               116
  CLUS_2               2                89
  CLUS_3               4                86
D79V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                92
  CLUS_2               2                82
  CLUS_3               3               117
D79V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                97
  CLUS_2               3               124
  CLUS_3               1                92
D79V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               5               176
  CLUS_2               2               128
  CLUS_3               1                 9
                     V1                      V2                      V3 
              "CN_CNMF"      "METHLYATION_CNMF"             "RPPA_CNMF" 
                     V4                      V5                      V6 
   "RPPA_CHIERARCHICAL"          "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL" 
                     V7                      V8 
          "MIRSEQ_CNMF"  "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
