
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.2.4054/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/335358/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/KIRC-TP/2666908/1.GDAC_mergedClustering.Finished/KIRC-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=KIRC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=KIRC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=502, in cluster file=493, common to both=493
[1]  30 493
[1] "Amp Peak  1(1q24.1) mutation analysis"
[1] 3
  AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE 
                           60                           433 
  AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE 
                           60                           433 
[1] "Amp Peak  2(1q32.1) mutation analysis"
[1] 3
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           59                           434 
  AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE 
                           59                           434 
[1] "Amp Peak  3(3q26.32) mutation analysis"
[1] 3
  AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE 
                            80                            413 
  AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE 
                            80                            413 
[1] "Amp Peak  4(4q32.1) mutation analysis"
[1] 3
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                           14                           479 
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                           14                           479 
[1] "Amp Peak  5(5q35.1) mutation analysis"
[1] 3
  AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE 
                          311                           182 
  AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE 
                          311                           182 
[1] "Amp Peak  6(7q36.3) mutation analysis"
[1] 3
  AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE 
                          163                           330 
  AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE 
                          163                           330 
[1] "Amp Peak  7(8q24.22) mutation analysis"
[1] 3
  AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE 
                            73                            420 
  AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE 
                            73                            420 
[1] "Amp Peak  8(10p14) mutation analysis"
[1] 3
  AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE 
                          16                          477 
  AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE 
                          16                          477 
[1] "Amp Peak  9(17q24.3) mutation analysis"
[1] 3
  AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE 
                            37                            456 
  AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE 
                            37                            456 
[1] "Amp Peak 10(Xp22.2) mutation analysis"
[1] 3
  AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE 
                           35                           458 
  AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE 
                           35                           458 
[1] "Amp Peak 11(Xp11.4) mutation analysis"
[1] 3
  AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE 
                           36                           457 
  AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE 
                           36                           457 
[1] "Amp Peak 12(Xq11.2) mutation analysis"
[1] 3
  AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE 
                           32                           461 
  AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE 
                           32                           461 
[1] "Del Peak  1(1p36.23) mutation analysis"
[1] 3
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            98                            395 
  DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE 
                            98                            395 
[1] "Del Peak  2(1p31.1) mutation analysis"
[1] 3
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           72                           421 
  DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE 
                           72                           421 
[1] "Del Peak  3(1q43) mutation analysis"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         38                         455 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                         38                         455 
[1] "Del Peak  4(2q37.3) mutation analysis"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           48                           445 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           48                           445 
[1] "Del Peak  5(3p25.3) mutation analysis"
[1] 3
  DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE 
                          432                            61 
  DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE 
                          432                            61 
[1] "Del Peak  6(3p21.32) mutation analysis"
[1] 3
  DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE 
                           435                             58 
  DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE 
                           435                             58 
[1] "Del Peak  7(3p12.2) mutation analysis"
[1] 3
  DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE 
                          283                           210 
  DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE 
                          283                           210 
[1] "Del Peak  8(3q11.2) mutation analysis"
[1] 3
  DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE 
                          150                           343 
  DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE 
                          150                           343 
[1] "Del Peak  9(4q34.3) mutation analysis"
[1] 3
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                           76                           417 
  DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE 
                           76                           417 
[1] "Del Peak 10(6q26) mutation analysis"
[1] 3
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                        142                         351 
  DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE 
                        142                         351 
[1] "Del Peak 11(6q26) mutation analysis"
[1] 3
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        142                         351 
  DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE 
                        142                         351 
[1] "Del Peak 12(8p23.2) mutation analysis"
[1] 3
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                          146                           347 
  DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE 
                          146                           347 
[1] "Del Peak 13(9p23) mutation analysis"
[1] 3
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                        144                         349 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                        144                         349 
[1] "Del Peak 14(9p21.3) mutation analysis"
[1] 3
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                          152                           341 
  DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE 
                          152                           341 
[1] "Del Peak 15(10q23.31) mutation analysis"
[1] 3
  DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE 
                             90                             403 
  DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE 
                             90                             403 
[1] "Del Peak 16(13q13.3) mutation analysis"
[1] 3
  DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE 
                            76                            417 
  DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE 
                            76                            417 
[1] "Del Peak 17(14q31.1) mutation analysis"
[1] 3
  DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE 
                           218                            275 
  DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE 
                           218                            275 
[1] "Del Peak 18(Xq23) mutation analysis"
[1] 3
  DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE 
                         55                         438 
  DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE 
                         55                         438 
[1] "data2feature, selection=ALL"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 

Input Data has 10 rows and 493 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "CN_CNMF"              
 [4] "METHLYATION_CNMF"      "RPPA_CNMF"             "RPPA_CHIERARCHICAL"   
 [7] "MRNASEQ_CNMF"          "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"          
[10] "MIRSEQ_CHIERARCHICAL" 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 493 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q24.1) mutation analysis
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           6                            18
  CLUS_3                           1                            12
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           5                            18
  CLUS_3                           4                            29
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          35                            97
  CLUS_2                          11                           186
  CLUS_3                          14                           150
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          10                            86
  CLUS_2                           9                           109
  CLUS_3                           9                            55
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          31                           128
  CLUS_2                          12                           135
  CLUS_3                          11                           130
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          19                           113
  CLUS_2                          21                           190
  CLUS_3                          14                            90
D1V7, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          18                           179
  CLUS_2                          36                           143
  CLUS_3                           3                            94
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           2                            67
  CLUS_2                          21                           193
  CLUS_3                          34                           156
D1V9, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                           4                           100
  CLUS_2                          16                           168
  CLUS_3                          33                           110
  CLUS_4                           5                            39
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q24.1) MUTATED AMP PEAK  1(1Q24.1) WILD-TYPE
  CLUS_1                          21                           144
  CLUS_2                          31                           228
  CLUS_3                           6                            45

Clustering(2) Variable = Amp Peak  2(1q32.1) mutation analysis
D2V1, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           5                            19
  CLUS_3                           1                            12
D2V2, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           4                            19
  CLUS_3                           4                            29
D2V3, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          37                            95
  CLUS_2                           8                           189
  CLUS_3                          14                           150
D2V4, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          10                            86
  CLUS_2                           7                           111
  CLUS_3                           9                            55
D2V5, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          32                           127
  CLUS_2                          13                           134
  CLUS_3                           9                           132
D2V6, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          21                           111
  CLUS_2                          21                           190
  CLUS_3                          12                            92
D2V7, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          18                           179
  CLUS_2                          36                           143
  CLUS_3                           2                            95
D2V8, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           1                            68
  CLUS_2                          22                           192
  CLUS_3                          33                           157
D2V9, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                           4                           100
  CLUS_2                          16                           168
  CLUS_3                          33                           110
  CLUS_4                           4                            40
D2V10, multiclass
        clus
vv       AMP PEAK  2(1Q32.1) MUTATED AMP PEAK  2(1Q32.1) WILD-TYPE
  CLUS_1                          20                           145
  CLUS_2                          31                           228
  CLUS_3                           6                            45

Clustering(3) Variable = Amp Peak  3(3q26.32) mutation analysis
D3V1, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            7                             17
  CLUS_3                            1                             12
D3V2, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            1                             13
  CLUS_2                            7                             16
  CLUS_3                            2                             31
D3V3, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           35                             97
  CLUS_2                           13                            184
  CLUS_3                           32                            132
D3V4, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           28                             68
  CLUS_2                            6                            112
  CLUS_3                           11                             53
D3V5, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           40                            119
  CLUS_2                           14                            133
  CLUS_3                           21                            120
D3V6, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           21                            111
  CLUS_2                           23                            188
  CLUS_3                           31                             73
D3V7, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           18                            179
  CLUS_2                           51                            128
  CLUS_3                           11                             86
D3V8, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                            7                             62
  CLUS_2                           18                            196
  CLUS_3                           55                            135
D3V9, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           10                             94
  CLUS_2                           16                            168
  CLUS_3                           43                            100
  CLUS_4                            8                             36
D3V10, multiclass
        clus
vv       AMP PEAK  3(3Q26.32) MUTATED AMP PEAK  3(3Q26.32) WILD-TYPE
  CLUS_1                           30                            135
  CLUS_2                           32                            227
  CLUS_3                           15                             36

Clustering(4) Variable = Amp Peak  4(4q32.1) mutation analysis
D4V1, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  4(4Q32.1) MUTATED"
clus
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                            2                            68 
                   TCGA-A3-3306                    TCGA-A3-3307 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3308                    TCGA-A3-3311 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3313                    TCGA-A3-3316 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3317                    TCGA-A3-3319 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3320                    TCGA-A3-3322 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3323                    TCGA-A3-3324 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3325                    TCGA-A3-3326 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3331                    TCGA-A3-3335 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3336                    TCGA-A3-3343 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3346                    TCGA-A3-3347 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3349                    TCGA-A3-3351 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3352                    TCGA-A3-3359 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3362                    TCGA-A3-3363 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3365                    TCGA-A3-3372 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3378                    TCGA-A3-3380 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3382                    TCGA-A3-3383 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3426                    TCGA-AK-3427 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3440                    TCGA-AK-3443 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3444                    TCGA-AK-3447 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3453                    TCGA-AK-3455 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3456                    TCGA-AK-3465 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AS-3777                    TCGA-AS-3778 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-3923                    TCGA-B2-3924 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-4098                    TCGA-B2-4099 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-4102                    TCGA-B8-4148 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4151                    TCGA-B8-4154 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4619                    TCGA-B8-4620 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4161                    TCGA-BP-4162 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4163                    TCGA-BP-4164 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4167                    TCGA-CJ-4634 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4636                    TCGA-CJ-4637 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4638                    TCGA-CJ-4639 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4640                    TCGA-CJ-4641 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4643                    TCGA-CJ-4644 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
D4V2, multiclass
[1] "Remove cluster labels:"      "AMP PEAK  4(4Q32.1) MUTATED"
clus
  AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE 
                            2                            68 
                   TCGA-A3-3306                    TCGA-A3-3307 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3308                    TCGA-A3-3311 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3313                    TCGA-A3-3316 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3317                    TCGA-A3-3319 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3320                    TCGA-A3-3322 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3323                    TCGA-A3-3324 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3325                    TCGA-A3-3326 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3331                    TCGA-A3-3335 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3336                    TCGA-A3-3343 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3346                    TCGA-A3-3347 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3349                    TCGA-A3-3351 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3352                    TCGA-A3-3359 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3362                    TCGA-A3-3363 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3365                    TCGA-A3-3372 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3378                    TCGA-A3-3380 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-A3-3382                    TCGA-A3-3383 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3426                    TCGA-AK-3427 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3440                    TCGA-AK-3443 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3444                    TCGA-AK-3447 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3453                    TCGA-AK-3455 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AK-3456                    TCGA-AK-3465 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-AS-3777                    TCGA-AS-3778 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-3923                    TCGA-B2-3924 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-4098                    TCGA-B2-4099 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B2-4102                    TCGA-B8-4148 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4151                    TCGA-B8-4154 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-B8-4619                    TCGA-B8-4620 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4161                    TCGA-BP-4162 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4163                    TCGA-BP-4164 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-BP-4167                    TCGA-CJ-4634 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4636                    TCGA-CJ-4637 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4638                    TCGA-CJ-4639 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4640                    TCGA-CJ-4641 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
                   TCGA-CJ-4643                    TCGA-CJ-4644 
"AMP PEAK  4(4Q32.1) WILD-TYPE" "AMP PEAK  4(4Q32.1) WILD-TYPE" 
D4V3, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           4                           128
  CLUS_2                           4                           193
  CLUS_3                           6                           158
D4V4, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           2                            94
  CLUS_2                           3                           115
  CLUS_3                           1                            63
D4V5, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           6                           153
  CLUS_2                           0                           147
  CLUS_3                           4                           137
D4V6, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           3                           129
  CLUS_2                           3                           208
  CLUS_3                           4                           100
D4V7, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           2                           195
  CLUS_2                           6                           173
  CLUS_3                           5                            92
D4V8, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           3                            66
  CLUS_2                           4                           210
  CLUS_3                           6                           184
D4V9, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           3                           101
  CLUS_2                           1                           183
  CLUS_3                           7                           136
  CLUS_4                           3                            41
D4V10, multiclass
        clus
vv       AMP PEAK  4(4Q32.1) MUTATED AMP PEAK  4(4Q32.1) WILD-TYPE
  CLUS_1                           7                           158
  CLUS_2                           4                           255
  CLUS_3                           3                            48

Clustering(5) Variable = Amp Peak  5(5q35.1) mutation analysis
D5V1, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          20                            13
  CLUS_2                          14                            10
  CLUS_3                           2                            11
D5V2, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                          14                             9
  CLUS_3                          20                            13
D5V3, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          94                            38
  CLUS_2                         136                            61
  CLUS_3                          81                            83
D5V4, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          60                            36
  CLUS_2                          76                            42
  CLUS_3                          39                            25
D5V5, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          93                            66
  CLUS_2                         105                            42
  CLUS_3                          88                            53
D5V6, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          94                            38
  CLUS_2                         140                            71
  CLUS_3                          52                            52
D5V7, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                         133                            64
  CLUS_2                         118                            61
  CLUS_3                          49                            48
D5V8, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          30                            39
  CLUS_2                         148                            66
  CLUS_3                         122                            68
D5V9, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          57                            47
  CLUS_2                         131                            53
  CLUS_3                          85                            58
  CLUS_4                          29                            15
D5V10, multiclass
        clus
vv       AMP PEAK  5(5Q35.1) MUTATED AMP PEAK  5(5Q35.1) WILD-TYPE
  CLUS_1                          98                            67
  CLUS_2                         180                            79
  CLUS_3                          24                            27

Clustering(6) Variable = Amp Peak  6(7q36.3) mutation analysis
D6V1, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                           9                            24
  CLUS_2                           9                            15
  CLUS_3                           5                             8
D6V2, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           9                            14
  CLUS_3                           9                            24
D6V3, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          63                            69
  CLUS_2                          41                           156
  CLUS_3                          59                           105
D6V4, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          37                            59
  CLUS_2                          30                            88
  CLUS_3                          13                            51
D6V5, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          68                            91
  CLUS_2                          31                           116
  CLUS_3                          49                            92
D6V6, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          51                            81
  CLUS_2                          56                           155
  CLUS_3                          41                            63
D6V7, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          48                           149
  CLUS_2                          80                            99
  CLUS_3                          29                            68
D6V8, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          18                            51
  CLUS_2                          59                           155
  CLUS_3                          80                           110
D6V9, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          35                            69
  CLUS_2                          54                           130
  CLUS_3                          61                            82
  CLUS_4                          10                            34
D6V10, multiclass
        clus
vv       AMP PEAK  6(7Q36.3) MUTATED AMP PEAK  6(7Q36.3) WILD-TYPE
  CLUS_1                          63                           102
  CLUS_2                          76                           183
  CLUS_3                          21                            30

Clustering(7) Variable = Amp Peak  7(8q24.22) mutation analysis
D7V1, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            3                             21
  CLUS_3                            2                             11
D7V2, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                             20
  CLUS_3                            1                             32
D7V3, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           42                             90
  CLUS_2                            3                            194
  CLUS_3                           28                            136
D7V4, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           30                             66
  CLUS_2                            6                            112
  CLUS_3                           11                             53
D7V5, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           42                            117
  CLUS_2                            7                            140
  CLUS_3                           19                            122
D7V6, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           18                            114
  CLUS_2                           22                            189
  CLUS_3                           28                             76
D7V7, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            8                            189
  CLUS_2                           53                            126
  CLUS_3                            8                             89
D7V8, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                            3                             66
  CLUS_2                           12                            202
  CLUS_3                           54                            136
D7V9, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           12                             92
  CLUS_2                           10                            174
  CLUS_3                           44                             99
  CLUS_4                            5                             39
D7V10, multiclass
        clus
vv       AMP PEAK  7(8Q24.22) MUTATED AMP PEAK  7(8Q24.22) WILD-TYPE
  CLUS_1                           38                            127
  CLUS_2                           23                            236
  CLUS_3                           10                             41

Clustering(8) Variable = Amp Peak  8(10p14) mutation analysis
D8V1, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          0                           33
  CLUS_2                          2                           22
  CLUS_3                          1                           12
D8V2, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          1                           13
  CLUS_2                          2                           21
  CLUS_3                          0                           33
D8V3, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          7                          125
  CLUS_2                          1                          196
  CLUS_3                          8                          156
D8V4, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          5                           91
  CLUS_2                          2                          116
  CLUS_3                          3                           61
D8V5, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                         10                          149
  CLUS_2                          2                          145
  CLUS_3                          3                          138
D8V6, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          2                          130
  CLUS_2                          5                          206
  CLUS_3                          8                           96
D8V7, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          2                          195
  CLUS_2                         10                          169
  CLUS_3                          4                           93
D8V8, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          1                           68
  CLUS_2                          2                          212
  CLUS_3                         13                          177
D8V9, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          3                          101
  CLUS_2                          3                          181
  CLUS_3                          8                          135
  CLUS_4                          2                           42
D8V10, multiclass
        clus
vv       AMP PEAK  8(10P14) MUTATED AMP PEAK  8(10P14) WILD-TYPE
  CLUS_1                          7                          158
  CLUS_2                          5                          254
  CLUS_3                          4                           47

Clustering(9) Variable = Amp Peak  9(17q24.3) mutation analysis
D9V1, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            1                             23
  CLUS_3                            3                             10
D9V2, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            1                             22
  CLUS_3                            1                             32
D9V3, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                           13                            119
  CLUS_2                            6                            191
  CLUS_3                           18                            146
D9V4, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                           10                             86
  CLUS_2                            6                            112
  CLUS_3                            8                             56
D9V5, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                           17                            142
  CLUS_2                            6                            141
  CLUS_3                            9                            132
D9V6, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                           10                            122
  CLUS_2                           12                            199
  CLUS_3                           10                             94
D9V7, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                           10                            187
  CLUS_2                           17                            162
  CLUS_3                            9                             88
D9V8, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                            9                             60
  CLUS_2                            9                            205
  CLUS_3                           18                            172
D9V9, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                            9                             95
  CLUS_2                            7                            177
  CLUS_3                           17                            126
  CLUS_4                            3                             41
D9V10, multiclass
        clus
vv       AMP PEAK  9(17Q24.3) MUTATED AMP PEAK  9(17Q24.3) WILD-TYPE
  CLUS_1                           15                            150
  CLUS_2                           13                            246
  CLUS_3                            8                             43

Clustering(10) Variable = Amp Peak 10(Xp22.2) mutation analysis
D10V1, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           2                            22
  CLUS_3                           1                            12
D10V2, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           2                            21
  CLUS_3                           2                            31
D10V3, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                          17                           115
  CLUS_2                           7                           190
  CLUS_3                          11                           153
D10V4, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           8                            88
  CLUS_2                           3                           115
  CLUS_3                           3                            61
D10V5, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                          14                           145
  CLUS_2                           3                           144
  CLUS_3                          12                           129
D10V6, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           7                           125
  CLUS_2                          10                           201
  CLUS_3                          12                            92
D10V7, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           8                           189
  CLUS_2                          16                           163
  CLUS_3                           9                            88
D10V8, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           5                            64
  CLUS_2                          10                           204
  CLUS_3                          18                           172
D10V9, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                           6                            98
  CLUS_2                           7                           177
  CLUS_3                          18                           125
  CLUS_4                           4                            40
D10V10, multiclass
        clus
vv       AMP PEAK 10(XP22.2) MUTATED AMP PEAK 10(XP22.2) WILD-TYPE
  CLUS_1                          12                           153
  CLUS_2                          16                           243
  CLUS_3                           7                            44

Clustering(11) Variable = Amp Peak 11(Xp11.4) mutation analysis
D11V1, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                           3                            30
  CLUS_2                           1                            23
  CLUS_3                           1                            12
D11V2, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           1                            22
  CLUS_3                           3                            30
D11V3, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                          16                           116
  CLUS_2                           7                           190
  CLUS_3                          13                           151
D11V4, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                          11                            85
  CLUS_2                           4                           114
  CLUS_3                           3                            61
D11V5, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                          14                           145
  CLUS_2                           4                           143
  CLUS_3                          11                           130
D11V6, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                           5                           127
  CLUS_2                          11                           200
  CLUS_3                          13                            91
D11V7, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                           8                           189
  CLUS_2                          17                           162
  CLUS_3                          11                            86
D11V8, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                           5                            64
  CLUS_2                          10                           204
  CLUS_3                          21                           169
D11V9, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                           6                            98
  CLUS_2                           7                           177
  CLUS_3                          18                           125
  CLUS_4                           4                            40
D11V10, multiclass
        clus
vv       AMP PEAK 11(XP11.4) MUTATED AMP PEAK 11(XP11.4) WILD-TYPE
  CLUS_1                          12                           153
  CLUS_2                          16                           243
  CLUS_3                           7                            44

Clustering(12) Variable = Amp Peak 12(Xq11.2) mutation analysis
D12V1, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           0                            24
  CLUS_3                           2                            11
D12V2, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           0                            23
  CLUS_3                           2                            31
D12V3, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                          12                           120
  CLUS_2                           9                           188
  CLUS_3                          11                           153
D12V4, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           7                            89
  CLUS_2                           3                           115
  CLUS_3                           3                            61
D12V5, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                          11                           148
  CLUS_2                           6                           141
  CLUS_3                          10                           131
D12V6, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           5                           127
  CLUS_2                          11                           200
  CLUS_3                          11                            93
D12V7, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           9                           188
  CLUS_2                          12                           167
  CLUS_3                          11                            86
D12V8, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           6                            63
  CLUS_2                          11                           203
  CLUS_3                          15                           175
D12V9, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                           7                            97
  CLUS_2                           8                           176
  CLUS_3                          13                           130
  CLUS_4                           3                            41
D12V10, multiclass
        clus
vv       AMP PEAK 12(XQ11.2) MUTATED AMP PEAK 12(XQ11.2) WILD-TYPE
  CLUS_1                          10                           155
  CLUS_2                          14                           245
  CLUS_3                           7                            44

Clustering(13) Variable = Del Peak  1(1p36.23) mutation analysis
D13V1, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            8                             16
  CLUS_3                            8                              5
D13V2, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                            9                              5
  CLUS_2                            7                             16
  CLUS_3                            2                             31
D13V3, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           36                             96
  CLUS_2                           13                            184
  CLUS_3                           49                            115
D13V4, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           23                             73
  CLUS_2                           15                            103
  CLUS_3                           18                             46
D13V5, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           48                            111
  CLUS_2                           15                            132
  CLUS_3                           24                            117
D13V6, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           31                            101
  CLUS_2                           26                            185
  CLUS_3                           30                             74
D13V7, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           24                            173
  CLUS_2                           53                            126
  CLUS_3                           17                             80
D13V8, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           18                             51
  CLUS_2                           26                            188
  CLUS_3                           50                            140
D13V9, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           22                             82
  CLUS_2                           20                            164
  CLUS_3                           52                             91
  CLUS_4                            4                             40
D13V10, multiclass
        clus
vv       DEL PEAK  1(1P36.23) MUTATED DEL PEAK  1(1P36.23) WILD-TYPE
  CLUS_1                           41                            124
  CLUS_2                           32                            227
  CLUS_3                           25                             26

Clustering(14) Variable = Del Peak  2(1p31.1) mutation analysis
D14V1, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           2                            31
  CLUS_2                           5                            19
  CLUS_3                           7                             6
D14V2, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                           8                             6
  CLUS_2                           4                            19
  CLUS_3                           2                            31
D14V3, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          27                           105
  CLUS_2                          12                           185
  CLUS_3                          33                           131
D14V4, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          19                            77
  CLUS_2                          10                           108
  CLUS_3                          10                            54
D14V5, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          35                           124
  CLUS_2                          12                           135
  CLUS_3                          18                           123
D14V6, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          22                           110
  CLUS_2                          20                           191
  CLUS_3                          23                            81
D14V7, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          20                           177
  CLUS_2                          33                           146
  CLUS_3                          16                            81
D14V8, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          17                            52
  CLUS_2                          21                           193
  CLUS_3                          31                           159
D14V9, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          13                            91
  CLUS_2                          17                           167
  CLUS_3                          39                           104
  CLUS_4                           3                            41
D14V10, multiclass
        clus
vv       DEL PEAK  2(1P31.1) MUTATED DEL PEAK  2(1P31.1) WILD-TYPE
  CLUS_1                          23                           142
  CLUS_2                          28                           231
  CLUS_3                          21                            30

Clustering(15) Variable = Del Peak  3(1q43) mutation analysis
D15V1, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                          31
  CLUS_2                         1                          23
  CLUS_3                         5                           8
D15V2, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         5                           9
  CLUS_2                         1                          22
  CLUS_3                         2                          31
D15V3, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         7                         125
  CLUS_2                         9                         188
  CLUS_3                        22                         142
D15V4, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         7                          89
  CLUS_2                        10                         108
  CLUS_3                         3                          61
D15V5, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        11                         148
  CLUS_2                        11                         136
  CLUS_3                        12                         129
D15V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         8                         124
  CLUS_2                        11                         200
  CLUS_3                        15                          89
D15V7, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        15                         182
  CLUS_2                         8                         171
  CLUS_3                        15                          82
D15V8, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                        13                          56
  CLUS_2                        14                         200
  CLUS_3                        11                         179
D15V9, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         6                          98
  CLUS_2                        17                         167
  CLUS_3                        15                         128
  CLUS_4                         0                          44
D15V10, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         8                         157
  CLUS_2                        17                         242
  CLUS_3                        13                          38

Clustering(16) Variable = Del Peak  4(2q37.3) mutation analysis
D16V1, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           1                            32
  CLUS_2                           4                            20
  CLUS_3                           6                             7
D16V2, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           4                            19
  CLUS_3                           1                            32
D16V3, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          14                           118
  CLUS_2                          15                           182
  CLUS_3                          19                           145
D16V4, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          11                            85
  CLUS_2                          10                           108
  CLUS_3                           6                            58
D16V5, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          15                           144
  CLUS_2                           9                           138
  CLUS_3                          16                           125
D16V6, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          10                           122
  CLUS_2                          17                           194
  CLUS_3                          13                            91
D16V7, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           7                           190
  CLUS_2                          19                           160
  CLUS_3                          18                            79
D16V8, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          12                            57
  CLUS_2                           8                           206
  CLUS_3                          24                           166
D16V9, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                           9                            95
  CLUS_2                          13                           171
  CLUS_3                          19                           124
  CLUS_4                           5                            39
D16V10, multiclass
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  CLUS_1                          15                           150
  CLUS_2                          17                           242
  CLUS_3                          14                            37

Clustering(17) Variable = Del Peak  5(3p25.3) mutation analysis
D17V1, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          32                             1
  CLUS_2                          22                             2
  CLUS_3                           3                            10
D17V2, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                          22                             1
  CLUS_3                          32                             1
D17V3, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         130                             2
  CLUS_2                         197                             0
  CLUS_3                         105                            59
D17V4, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          91                             5
  CLUS_2                         108                            10
  CLUS_3                          48                            16
D17V5, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         139                            20
  CLUS_2                         140                             7
  CLUS_3                         117                            24
D17V6, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         123                             9
  CLUS_2                         191                            20
  CLUS_3                          82                            22
D17V7, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         190                             7
  CLUS_2                         160                            19
  CLUS_3                          63                            34
D17V8, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          37                            32
  CLUS_2                         206                             8
  CLUS_3                         170                            20
D17V9, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                          86                            18
  CLUS_2                         177                             7
  CLUS_3                         111                            32
  CLUS_4                          41                             3
D17V10, multiclass
        clus
vv       DEL PEAK  5(3P25.3) MUTATED DEL PEAK  5(3P25.3) WILD-TYPE
  CLUS_1                         141                            24
  CLUS_2                         244                            15
  CLUS_3                          30                            21

Clustering(18) Variable = Del Peak  6(3p21.32) mutation analysis
D18V1, multiclass
        clus
vv       DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                           32                              1
  CLUS_2                           22                              2
  CLUS_3                            3                             10
D18V2, multiclass
        clus
vv       DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                           22                              1
  CLUS_3                           32                              1
D18V3, multiclass
        clus
vv       DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                          132                              0
  CLUS_2                          196                              1
  CLUS_3                          107                             57
D18V4, multiclass
        clus
vv       DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                           91                              5
  CLUS_2                          108                             10
  CLUS_3                           49                             15
D18V5, multiclass
        clus
vv       DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                          142                             17
  CLUS_2                          139                              8
  CLUS_3                          118                             23
D18V6, multiclass
        clus
vv       DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                          124                              8
  CLUS_2                          193                             18
  CLUS_3                           82                             22
D18V7, multiclass
        clus
vv       DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                          192                              5
  CLUS_2                          161                             18
  CLUS_3                           63                             34
D18V8, multiclass
        clus
vv       DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                           38                             31
  CLUS_2                          208                              6
  CLUS_3                          170                             20
D18V9, multiclass
        clus
vv       DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                           86                             18
  CLUS_2                          178                              6
  CLUS_3                          114                             29
  CLUS_4                           40                              4
D18V10, multiclass
        clus
vv       DEL PEAK  6(3P21.32) MUTATED DEL PEAK  6(3P21.32) WILD-TYPE
  CLUS_1                          139                             26
  CLUS_2                          247                             12
  CLUS_3                           32                             19

Clustering(19) Variable = Del Peak  7(3p12.2) mutation analysis
D19V1, multiclass
        clus
vv       DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE
  CLUS_1                          18                            15
  CLUS_2                          13                            11
  CLUS_3                           2                            11
D19V2, multiclass
        clus
vv       DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                          14                             9
  CLUS_3                          17                            16
D19V3, multiclass
        clus
vv       DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE
  CLUS_1                         115                            17
  CLUS_2                         102                            95
  CLUS_3                          66                            98
D19V4, multiclass
        clus
vv       DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE
  CLUS_1                          62                            34
  CLUS_2                          69                            49
  CLUS_3                          34                            30
D19V5, multiclass
        clus
vv       DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE
  CLUS_1                          94                            65
  CLUS_2                          91                            56
  CLUS_3                          75                            66
D19V6, multiclass
        clus
vv       DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE
  CLUS_1                          78                            54
  CLUS_2                         131                            80
  CLUS_3                          51                            53
D19V7, multiclass
        clus
vv       DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE
  CLUS_1                         116                            81
  CLUS_2                         112                            67
  CLUS_3                          41                            56
D19V8, multiclass
        clus
vv       DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE
  CLUS_1                          24                            45
  CLUS_2                         125                            89
  CLUS_3                         120                            70
D19V9, multiclass
        clus
vv       DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE
  CLUS_1                          51                            53
  CLUS_2                         108                            76
  CLUS_3                          80                            63
  CLUS_4                          33                            11
D19V10, multiclass
        clus
vv       DEL PEAK  7(3P12.2) MUTATED DEL PEAK  7(3P12.2) WILD-TYPE
  CLUS_1                          91                            74
  CLUS_2                         157                           102
  CLUS_3                          24                            27

Clustering(20) Variable = Del Peak  8(3q11.2) mutation analysis
D20V1, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          11                            22
  CLUS_2                           8                            16
  CLUS_3                           1                            12
D20V2, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           9                            14
  CLUS_3                          10                            23
D20V3, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          57                            75
  CLUS_2                          54                           143
  CLUS_3                          39                           125
D20V4, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          32                            64
  CLUS_2                          37                            81
  CLUS_3                          17                            47
D20V5, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          50                           109
  CLUS_2                          49                            98
  CLUS_3                          42                            99
D20V6, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          45                            87
  CLUS_2                          71                           140
  CLUS_3                          25                            79
D20V7, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          57                           140
  CLUS_2                          59                           120
  CLUS_3                          26                            71
D20V8, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          15                            54
  CLUS_2                          61                           153
  CLUS_3                          66                           124
D20V9, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          25                            79
  CLUS_2                          61                           123
  CLUS_3                          37                           106
  CLUS_4                          22                            22
D20V10, multiclass
        clus
vv       DEL PEAK  8(3Q11.2) MUTATED DEL PEAK  8(3Q11.2) WILD-TYPE
  CLUS_1                          55                           110
  CLUS_2                          82                           177
  CLUS_3                           8                            43

Clustering(21) Variable = Del Peak  9(4q34.3) mutation analysis
D21V1, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                           4                            20
  CLUS_3                           0                            13
D21V2, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           0                            14
  CLUS_2                           4                            19
  CLUS_3                           6                            27
D21V3, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          37                            95
  CLUS_2                           9                           188
  CLUS_3                          30                           134
D21V4, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          30                            66
  CLUS_2                          12                           106
  CLUS_3                          10                            54
D21V5, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          37                           122
  CLUS_2                          19                           128
  CLUS_3                          16                           125
D21V6, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          21                           111
  CLUS_2                          28                           183
  CLUS_3                          23                            81
D21V7, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          24                           173
  CLUS_2                          41                           138
  CLUS_3                           6                            91
D21V8, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                           2                            67
  CLUS_2                          24                           190
  CLUS_3                          45                           145
D21V9, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          17                            87
  CLUS_2                          26                           158
  CLUS_3                          24                           119
  CLUS_4                           8                            36
D21V10, multiclass
        clus
vv       DEL PEAK  9(4Q34.3) MUTATED DEL PEAK  9(4Q34.3) WILD-TYPE
  CLUS_1                          37                           128
  CLUS_2                          34                           225
  CLUS_3                           4                            47

Clustering(22) Variable = Del Peak 10(6q26) mutation analysis
D22V1, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                        12                          12
  CLUS_3                         8                           5
D22V2, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                         8                           6
  CLUS_2                        13                          10
  CLUS_3                         6                          27
D22V3, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        84                          48
  CLUS_2                        19                         178
  CLUS_3                        39                         125
D22V4, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        35                          61
  CLUS_2                        24                          94
  CLUS_3                        13                          51
D22V5, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        69                          90
  CLUS_2                        35                         112
  CLUS_3                        24                         117
D22V6, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        42                          90
  CLUS_2                        44                         167
  CLUS_3                        42                          62
D22V7, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        48                         149
  CLUS_2                        68                         111
  CLUS_3                        17                          80
D22V8, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        15                          54
  CLUS_2                        51                         163
  CLUS_3                        67                         123
D22V9, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        21                          83
  CLUS_2                        41                         143
  CLUS_3                        64                          79
  CLUS_4                        12                          32
D22V10, multiclass
        clus
vv       DEL PEAK 10(6Q26) MUTATED DEL PEAK 10(6Q26) WILD-TYPE
  CLUS_1                        49                         116
  CLUS_2                        66                         193
  CLUS_3                        23                          28

Clustering(23) Variable = Del Peak 11(6q26) mutation analysis
D23V1, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         7                          26
  CLUS_2                        12                          12
  CLUS_3                         8                           5
D23V2, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                         8                           6
  CLUS_2                        13                          10
  CLUS_3                         6                          27
D23V3, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        84                          48
  CLUS_2                        19                         178
  CLUS_3                        39                         125
D23V4, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        35                          61
  CLUS_2                        24                          94
  CLUS_3                        13                          51
D23V5, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        69                          90
  CLUS_2                        35                         112
  CLUS_3                        24                         117
D23V6, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        43                          89
  CLUS_2                        44                         167
  CLUS_3                        41                          63
D23V7, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        48                         149
  CLUS_2                        69                         110
  CLUS_3                        16                          81
D23V8, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        15                          54
  CLUS_2                        51                         163
  CLUS_3                        67                         123
D23V9, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        20                          84
  CLUS_2                        41                         143
  CLUS_3                        65                          78
  CLUS_4                        12                          32
D23V10, multiclass
        clus
vv       DEL PEAK 11(6Q26) MUTATED DEL PEAK 11(6Q26) WILD-TYPE
  CLUS_1                        48                         117
  CLUS_2                        67                         192
  CLUS_3                        23                          28

Clustering(24) Variable = Del Peak 12(8p23.2) mutation analysis
D24V1, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                           6                            27
  CLUS_2                           7                            17
  CLUS_3                           4                             9
D24V2, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           7                            16
  CLUS_3                           6                            27
D24V3, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          51                            81
  CLUS_2                          35                           162
  CLUS_3                          60                           104
D24V4, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          37                            59
  CLUS_2                          25                            93
  CLUS_3                          19                            45
D24V5, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          56                           103
  CLUS_2                          35                           112
  CLUS_3                          40                           101
D24V6, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          41                            91
  CLUS_2                          55                           156
  CLUS_3                          35                            69
D24V7, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          51                           146
  CLUS_2                          68                           111
  CLUS_3                          19                            78
D24V8, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          14                            55
  CLUS_2                          54                           160
  CLUS_3                          70                           120
D24V9, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          33                            71
  CLUS_2                          38                           146
  CLUS_3                          60                            83
  CLUS_4                          12                            32
D24V10, multiclass
        clus
vv       DEL PEAK 12(8P23.2) MUTATED DEL PEAK 12(8P23.2) WILD-TYPE
  CLUS_1                          64                           101
  CLUS_2                          63                           196
  CLUS_3                          16                            35

Clustering(25) Variable = Del Peak 13(9p23) mutation analysis
D25V1, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                         5                          28
  CLUS_2                        12                          12
  CLUS_3                         1                          12
D25V2, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                         1                          13
  CLUS_2                        12                          11
  CLUS_3                         5                          28
D25V3, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        80                          52
  CLUS_2                         9                         188
  CLUS_3                        55                         109
D25V4, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        60                          36
  CLUS_2                         6                         112
  CLUS_3                        21                          43
D25V5, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        73                          86
  CLUS_2                        27                         120
  CLUS_3                        35                         106
D25V6, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        43                          89
  CLUS_2                        51                         160
  CLUS_3                        41                          63
D25V7, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        24                         173
  CLUS_2                       101                          78
  CLUS_3                        13                          84
D25V8, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                         9                          60
  CLUS_2                        24                         190
  CLUS_3                       105                          85
D25V9, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        25                          79
  CLUS_2                        23                         161
  CLUS_3                        76                          67
  CLUS_4                        15                          29
D25V10, multiclass
        clus
vv       DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE
  CLUS_1                        69                          96
  CLUS_2                        53                         206
  CLUS_3                        17                          34

Clustering(26) Variable = Del Peak 14(9p21.3) mutation analysis
D26V1, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                           5                            28
  CLUS_2                          13                            11
  CLUS_3                           1                            12
D26V2, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                          13                            10
  CLUS_3                           5                            28
D26V3, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          81                            51
  CLUS_2                          11                           186
  CLUS_3                          60                           104
D26V4, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          62                            34
  CLUS_2                           6                           112
  CLUS_3                          23                            41
D26V5, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          76                            83
  CLUS_2                          28                           119
  CLUS_3                          38                           103
D26V6, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          43                            89
  CLUS_2                          54                           157
  CLUS_3                          45                            59
D26V7, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          26                           171
  CLUS_2                         105                            74
  CLUS_3                          15                            82
D26V8, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                           8                            61
  CLUS_2                          25                           189
  CLUS_3                         113                            77
D26V9, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          28                            76
  CLUS_2                          24                           160
  CLUS_3                          79                            64
  CLUS_4                          15                            29
D26V10, multiclass
        clus
vv       DEL PEAK 14(9P21.3) MUTATED DEL PEAK 14(9P21.3) WILD-TYPE
  CLUS_1                          75                            90
  CLUS_2                          53                           206
  CLUS_3                          18                            33

Clustering(27) Variable = Del Peak 15(10q23.31) mutation analysis
D27V1, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             5                              28
  CLUS_2                             6                              18
  CLUS_3                             4                               9
D27V2, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                             4                              10
  CLUS_2                             5                              18
  CLUS_3                             6                              27
D27V3, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            36                              96
  CLUS_2                            15                             182
  CLUS_3                            39                             125
D27V4, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            30                              66
  CLUS_2                            15                             103
  CLUS_3                             9                              55
D27V5, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            36                             123
  CLUS_2                            21                             126
  CLUS_3                            24                             117
D27V6, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            20                             112
  CLUS_2                            36                             175
  CLUS_3                            25                              79
D27V7, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            26                             171
  CLUS_2                            40                             139
  CLUS_3                            19                              78
D27V8, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            14                              55
  CLUS_2                            28                             186
  CLUS_3                            43                             147
D27V9, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            17                              87
  CLUS_2                            25                             159
  CLUS_3                            35                             108
  CLUS_4                            11                              33
D27V10, multiclass
        clus
vv       DEL PEAK 15(10Q23.31) MUTATED DEL PEAK 15(10Q23.31) WILD-TYPE
  CLUS_1                            37                             128
  CLUS_2                            39                             220
  CLUS_3                            12                              39

Clustering(28) Variable = Del Peak 16(13q13.3) mutation analysis
D28V1, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                            1                             32
  CLUS_2                            7                             17
  CLUS_3                            3                             10
D28V2, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            7                             16
  CLUS_3                            1                             32
D28V3, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           31                            101
  CLUS_2                           12                            185
  CLUS_3                           33                            131
D28V4, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           21                             75
  CLUS_2                            8                            110
  CLUS_3                           16                             48
D28V5, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           40                            119
  CLUS_2                           10                            137
  CLUS_3                           19                            122
D28V6, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           21                            111
  CLUS_2                           25                            186
  CLUS_3                           23                             81
D28V7, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           15                            182
  CLUS_2                           48                            131
  CLUS_3                           11                             86
D28V8, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                            9                             60
  CLUS_2                           14                            200
  CLUS_3                           51                            139
D28V9, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           14                             90
  CLUS_2                           14                            170
  CLUS_3                           43                            100
  CLUS_4                            3                             41
D28V10, multiclass
        clus
vv       DEL PEAK 16(13Q13.3) MUTATED DEL PEAK 16(13Q13.3) WILD-TYPE
  CLUS_1                           32                            133
  CLUS_2                           25                            234
  CLUS_3                           17                             34

Clustering(29) Variable = Del Peak 17(14q31.1) mutation analysis
D29V1, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           10                             23
  CLUS_2                           19                              5
  CLUS_3                            2                             11
D29V2, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                           19                              4
  CLUS_3                            9                             24
D29V3, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           92                             40
  CLUS_2                           54                            143
  CLUS_3                           72                             92
D29V4, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           61                             35
  CLUS_2                           30                             88
  CLUS_3                           32                             32
D29V5, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                          102                             57
  CLUS_2                           57                             90
  CLUS_3                           42                             99
D29V6, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           79                             53
  CLUS_2                           73                            138
  CLUS_3                           49                             55
D29V7, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           68                            129
  CLUS_2                          126                             53
  CLUS_3                           17                             80
D29V8, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           11                             58
  CLUS_2                           76                            138
  CLUS_3                          124                             66
D29V9, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           39                             65
  CLUS_2                           64                            120
  CLUS_3                           96                             47
  CLUS_4                           13                             31
D29V10, multiclass
        clus
vv       DEL PEAK 17(14Q31.1) MUTATED DEL PEAK 17(14Q31.1) WILD-TYPE
  CLUS_1                           75                             90
  CLUS_2                          107                            152
  CLUS_3                           30                             21

Clustering(30) Variable = Del Peak 18(Xq23) mutation analysis
D30V1, multiclass
        clus
vv       DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE
  CLUS_1                         4                          29
  CLUS_2                         3                          21
  CLUS_3                         5                           8
D30V2, multiclass
        clus
vv       DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE
  CLUS_1                         5                           9
  CLUS_2                         4                          19
  CLUS_3                         3                          30
D30V3, multiclass
        clus
vv       DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE
  CLUS_1                        28                         104
  CLUS_2                         8                         189
  CLUS_3                        19                         145
D30V4, multiclass
        clus
vv       DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE
  CLUS_1                        18                          78
  CLUS_2                         5                         113
  CLUS_3                         3                          61
D30V5, multiclass
        clus
vv       DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE
  CLUS_1                        27                         132
  CLUS_2                         7                         140
  CLUS_3                        14                         127
D30V6, multiclass
        clus
vv       DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE
  CLUS_1                        14                         118
  CLUS_2                        13                         198
  CLUS_3                        21                          83
D30V7, multiclass
        clus
vv       DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE
  CLUS_1                        16                         181
  CLUS_2                        21                         158
  CLUS_3                        14                          83
D30V8, multiclass
        clus
vv       DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE
  CLUS_1                        11                          58
  CLUS_2                        14                         200
  CLUS_3                        26                         164
D30V9, multiclass
        clus
vv       DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE
  CLUS_1                         8                          96
  CLUS_2                        15                         169
  CLUS_3                        29                         114
  CLUS_4                         2                          42
D30V10, multiclass
        clus
vv       DEL PEAK 18(XQ23) MUTATED DEL PEAK 18(XQ23) WILD-TYPE
  CLUS_1                        16                         149
  CLUS_2                        22                         237
  CLUS_3                        16                          35
                     V1                      V2                      V3 
            "MRNA_CNMF"    "MRNA_CHIERARCHICAL"               "CN_CNMF" 
                     V4                      V5                      V6 
     "METHLYATION_CNMF"             "RPPA_CNMF"    "RPPA_CHIERARCHICAL" 
                     V7                      V8                      V9 
         "MRNASEQ_CNMF" "MRNASEQ_CHIERARCHICAL"           "MIRSEQ_CNMF" 
                    V10 
 "MIRSEQ_CHIERARCHICAL" 
> q(save="no")
