
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.81.4078/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/347517/LUSC-TP.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/LUSC-TP/2587688/1.GDAC_clinicalDataPicker.Finished/LUSC-TP.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=327, in cluster file=178, common to both=178
[1] 123 178
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              152 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              26              152 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              27              151 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              27              151 
[1] "NFE2L2 MUTATION ANALYSIS"
[1] 3
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              151 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              27              151 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           141             37 
  TP53 MUTATED TP53 WILD-TYPE 
           141             37 
[1] "TPTE MUTATION ANALYSIS"
[1] 3
  TPTE MUTATED TPTE WILD-TYPE 
            24            154 
  TPTE MUTATED TPTE WILD-TYPE 
            24            154 
[1] "KEAP1 MUTATION ANALYSIS"
[1] 3
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             156 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             156 
[1] "SI MUTATION ANALYSIS"
[1] 3
  SI MUTATED SI WILD-TYPE 
          36          142 
  SI MUTATED SI WILD-TYPE 
          36          142 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            14            164 
  PTEN MUTATED PTEN WILD-TYPE 
            14            164 
[1] "TRIM58 MUTATION ANALYSIS"
[1] 3
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              15              163 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              15              163 
[1] "OR5L2 MUTATION ANALYSIS"
[1] 3
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             165 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             165 
[1] "FAM5C MUTATION ANALYSIS"
[1] 3
  FAM5C MUTATED FAM5C WILD-TYPE 
             27             151 
  FAM5C MUTATED FAM5C WILD-TYPE 
             27             151 
[1] "LRRC4C MUTATION ANALYSIS"
[1] 3
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              17              161 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              17              161 
[1] "ZBBX MUTATION ANALYSIS"
[1] 3
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            161 
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            161 
[1] "DPPA4 MUTATION ANALYSIS"
[1] 3
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             12             166 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             12             166 
[1] "ASB5 MUTATION ANALYSIS"
[1] 3
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            169 
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            169 
[1] "PDYN MUTATION ANALYSIS"
[1] 3
  PDYN MUTATED PDYN WILD-TYPE 
            10            168 
  PDYN MUTATED PDYN WILD-TYPE 
            10            168 
[1] "REG1B MUTATION ANALYSIS"
[1] 3
  REG1B MUTATED REG1B WILD-TYPE 
             11             167 
  REG1B MUTATED REG1B WILD-TYPE 
             11             167 
[1] "CYP11B1 MUTATION ANALYSIS"
[1] 3
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               163 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               163 
[1] "CRB1 MUTATION ANALYSIS"
[1] 3
  CRB1 MUTATED CRB1 WILD-TYPE 
            23            155 
  CRB1 MUTATED CRB1 WILD-TYPE 
            23            155 
[1] "OR6F1 MUTATION ANALYSIS"
[1] 3
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             13             165 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             13             165 
[1] "ESRRG MUTATION ANALYSIS"
[1] 3
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             166 
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             166 
[1] "OR2T33 MUTATION ANALYSIS"
[1] 3
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              14              164 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              14              164 
[1] "OR2G6 MUTATION ANALYSIS"
[1] 3
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             16             162 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             16             162 
[1] "USP29 MUTATION ANALYSIS"
[1] 3
  USP29 MUTATED USP29 WILD-TYPE 
             17             161 
  USP29 MUTATED USP29 WILD-TYPE 
             17             161 
[1] "REG3A MUTATION ANALYSIS"
[1] 3
  REG3A MUTATED REG3A WILD-TYPE 
             11             167 
  REG3A MUTATED REG3A WILD-TYPE 
             11             167 
[1] "PNLIPRP3 MUTATION ANALYSIS"
[1] 3
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                12                166 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                12                166 
[1] "MAGEB2 MUTATION ANALYSIS"
[1] 3
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               9              169 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               9              169 
[1] "SPHKAP MUTATION ANALYSIS"
[1] 3
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              27              151 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              27              151 
[1] "CFHR4 MUTATION ANALYSIS"
[1] 3
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             168 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             168 
[1] "CPS1 MUTATION ANALYSIS"
[1] 3
  CPS1 MUTATED CPS1 WILD-TYPE 
            25            153 
  CPS1 MUTATED CPS1 WILD-TYPE 
            25            153 
[1] "ELTD1 MUTATION ANALYSIS"
[1] 3
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             18             160 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             18             160 
[1] "OR4M2 MUTATION ANALYSIS"
[1] 3
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             14             164 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             14             164 
[1] "OR51B2 MUTATION ANALYSIS"
[1] 3
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              168 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              168 
[1] "SLC13A1 MUTATION ANALYSIS"
[1] 3
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               166 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               166 
[1] "TGIF2LX MUTATION ANALYSIS"
[1] 3
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                9               169 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                9               169 
[1] "ASCL4 MUTATION ANALYSIS"
[1] 3
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              6             172 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              6             172 
[1] "REG3G MUTATION ANALYSIS"
[1] 3
  REG3G MUTATED REG3G WILD-TYPE 
              8             170 
  REG3G MUTATED REG3G WILD-TYPE 
              8             170 
[1] "CBLN4 MUTATION ANALYSIS"
[1] 3
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             173 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             173 
[1] "OR10G8 MUTATION ANALYSIS"
[1] 3
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              168 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              168 
[1] "OR4M1 MUTATION ANALYSIS"
[1] 3
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             165 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             165 
[1] "OR2T2 MUTATION ANALYSIS"
[1] 3
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              7             171 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              7             171 
[1] "OR2T8 MUTATION ANALYSIS"
[1] 3
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             170 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             170 
[1] "SPANXN1 MUTATION ANALYSIS"
[1] 3
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               173 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               173 
[1] "C20ORF26 MUTATION ANALYSIS"
[1] 3
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                20                158 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                20                158 
[1] "ZEB2 MUTATION ANALYSIS"
[1] 3
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            163 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            15            163 
[1] "PSG6 MUTATION ANALYSIS"
[1] 3
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            169 
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            169 
[1] "REG1A MUTATION ANALYSIS"
[1] 3
  REG1A MUTATED REG1A WILD-TYPE 
             11             167 
  REG1A MUTATED REG1A WILD-TYPE 
             11             167 
[1] "CLSTN2 MUTATION ANALYSIS"
[1] 3
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              17              161 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              17              161 
[1] "MTNR1B MUTATION ANALYSIS"
[1] 3
  MTNR1B MUTATED MTNR1B WILD-TYPE 
              10              168 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
              10              168 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           12           166 
  RB1 MUTATED RB1 WILD-TYPE 
           12           166 
[1] "ZNF567 MUTATION ANALYSIS"
[1] 3
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              175 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              175 
[1] "OR2A5 MUTATION ANALYSIS"
[1] 3
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             170 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             170 
[1] "PARK2 MUTATION ANALYSIS"
[1] 3
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             168 
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             168 
[1] "HS6ST1 MUTATION ANALYSIS"
[1] 3
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              173 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              173 
[1] "RNF144A MUTATION ANALYSIS"
[1] 3
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               171 
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               171 
[1] "CALN1 MUTATION ANALYSIS"
[1] 3
  CALN1 MUTATED CALN1 WILD-TYPE 
              9             169 
  CALN1 MUTATED CALN1 WILD-TYPE 
              9             169 
[1] "ZNF80 MUTATION ANALYSIS"
[1] 3
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             171 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             171 
[1] "CLVS2 MUTATION ANALYSIS"
[1] 3
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             169 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             169 
[1] "OR5M9 MUTATION ANALYSIS"
[1] 3
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              8             170 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              8             170 
[1] "SLC17A8 MUTATION ANALYSIS"
[1] 3
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               13               165 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               13               165 
[1] "TECRL MUTATION ANALYSIS"
[1] 3
  TECRL MUTATED TECRL WILD-TYPE 
              9             169 
  TECRL MUTATED TECRL WILD-TYPE 
              9             169 
[1] "OR4D5 MUTATION ANALYSIS"
[1] 3
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              9             169 
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              9             169 
[1] "POTEG MUTATION ANALYSIS"
[1] 3
  POTEG MUTATED POTEG WILD-TYPE 
             10             168 
  POTEG MUTATED POTEG WILD-TYPE 
             10             168 
[1] "TEX13A MUTATION ANALYSIS"
[1] 3
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              170 
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              170 
[1] "HIST2H2BE MUTATION ANALYSIS"
[1] 3
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  3                 175 
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  3                 175 
[1] "KCNJ3 MUTATION ANALYSIS"
[1] 3
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             167 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             167 
[1] "NUCB2 MUTATION ANALYSIS"
[1] 3
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              6             172 
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              6             172 
[1] "TRHDE MUTATION ANALYSIS"
[1] 3
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             164 
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             164 
[1] "OR14A16 MUTATION ANALYSIS"
[1] 3
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               10               168 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
               10               168 
[1] "OR6K3 MUTATION ANALYSIS"
[1] 3
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             170 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             170 
[1] "SLC6A5 MUTATION ANALYSIS"
[1] 3
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               6              172 
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               6              172 
[1] "OR2AK2 MUTATION ANALYSIS"
[1] 3
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              170 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              170 
[1] "FAM5B MUTATION ANALYSIS"
[1] 3
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             164 
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             164 
[1] "OR10A4 MUTATION ANALYSIS"
[1] 3
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              170 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              170 
[1] "OR8H1 MUTATION ANALYSIS"
[1] 3
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              8             170 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              8             170 
[1] "PYHIN1 MUTATION ANALYSIS"
[1] 3
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              167 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              167 
[1] "CNTNAP4 MUTATION ANALYSIS"
[1] 3
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               16               162 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               16               162 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
             5            173 
  HRAS MUTATED HRAS WILD-TYPE 
             5            173 
[1] "PRIM2 MUTATION ANALYSIS"
[1] 3
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             13             165 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             13             165 
[1] "SPOPL MUTATION ANALYSIS"
[1] 3
  SPOPL MUTATED SPOPL WILD-TYPE 
              6             172 
  SPOPL MUTATED SPOPL WILD-TYPE 
              6             172 
[1] "GPC5 MUTATION ANALYSIS"
[1] 3
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            167 
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            167 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             172 
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             172 
[1] "OR5AC2 MUTATION ANALYSIS"
[1] 3
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              171 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              171 
[1] "GABRA2 MUTATION ANALYSIS"
[1] 3
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              12              166 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              12              166 
[1] "GBA3 MUTATION ANALYSIS"
[1] 3
  GBA3 MUTATED GBA3 WILD-TYPE 
             9            169 
  GBA3 MUTATED GBA3 WILD-TYPE 
             9            169 
[1] "KIRREL2 MUTATION ANALYSIS"
[1] 3
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               167 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               167 
[1] "MS4A14 MUTATION ANALYSIS"
[1] 3
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              12              166 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              12              166 
[1] "TMEM195 MUTATION ANALYSIS"
[1] 3
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                8               170 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                8               170 
[1] "TMEM90A MUTATION ANALYSIS"
[1] 3
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                4               174 
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                4               174 
[1] "ZFP42 MUTATION ANALYSIS"
[1] 3
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              8             170 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              8             170 
[1] "LEPROT MUTATION ANALYSIS"
[1] 3
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              174 
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              174 
[1] "LRRTM3 MUTATION ANALYSIS"
[1] 3
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               8              170 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               8              170 
[1] "OR4N4 MUTATION ANALYSIS"
[1] 3
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              9             169 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              9             169 
[1] "SNAI1 MUTATION ANALYSIS"
[1] 3
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              4             174 
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              4             174 
[1] "APOBEC1 MUTATION ANALYSIS"
[1] 3
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                7               171 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                7               171 
[1] "BAGE2 MUTATION ANALYSIS"
[1] 3
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              3             175 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              3             175 
[1] "CD5L MUTATION ANALYSIS"
[1] 3
  CD5L MUTATED CD5L WILD-TYPE 
             8            170 
  CD5L MUTATED CD5L WILD-TYPE 
             8            170 
[1] "LIN37 MUTATION ANALYSIS"
[1] 3
  LIN37 MUTATED LIN37 WILD-TYPE 
              3             175 
  LIN37 MUTATED LIN37 WILD-TYPE 
              3             175 
[1] "OR4C11 MUTATION ANALYSIS"
[1] 3
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              171 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              171 
[1] "OR8K5 MUTATION ANALYSIS"
[1] 3
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              6             172 
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              6             172 
[1] "GABRG3 MUTATION ANALYSIS"
[1] 3
  GABRG3 MUTATED GABRG3 WILD-TYPE 
              10              168 
  GABRG3 MUTATED GABRG3 WILD-TYPE 
              10              168 
[1] "KRTAP10-7 MUTATION ANALYSIS"
[1] 3
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  7                 171 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  7                 171 
[1] "UGT3A2 MUTATION ANALYSIS"
[1] 3
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
              10              168 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
              10              168 
[1] "PRB2 MUTATION ANALYSIS"
[1] 3
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            171 
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            171 
[1] "HDAC9 MUTATION ANALYSIS"
[1] 3
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             164 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             164 
[1] "HAO1 MUTATION ANALYSIS"
[1] 3
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            171 
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            171 
[1] "OR2T12 MUTATION ANALYSIS"
[1] 3
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              170 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              170 
[1] "OR5AS1 MUTATION ANALYSIS"
[1] 3
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              171 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              171 
[1] "SCN7A MUTATION ANALYSIS"
[1] 3
  SCN7A MUTATED SCN7A WILD-TYPE 
             14             164 
  SCN7A MUTATED SCN7A WILD-TYPE 
             14             164 
[1] "SNTG2 MUTATION ANALYSIS"
[1] 3
  SNTG2 MUTATED SNTG2 WILD-TYPE 
              8             170 
  SNTG2 MUTATED SNTG2 WILD-TYPE 
              8             170 
[1] "FRG2B MUTATION ANALYSIS"
[1] 3
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             173 
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             173 
[1] "OR8K3 MUTATION ANALYSIS"
[1] 3
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             171 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             171 
[1] "OR5T1 MUTATION ANALYSIS"
[1] 3
  OR5T1 MUTATED OR5T1 WILD-TYPE 
             10             168 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
             10             168 
[1] "FCAR MUTATION ANALYSIS"
[1] 3
  FCAR MUTATED FCAR WILD-TYPE 
             8            170 
  FCAR MUTATED FCAR WILD-TYPE 
             8            170 
[1] "OR2M7 MUTATION ANALYSIS"
[1] 3
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             170 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             170 
[1] "CPXCR1 MUTATION ANALYSIS"
[1] 3
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              172 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               6              172 
[1] "COL6A6 MUTATION ANALYSIS"
[1] 3
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              19              159 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              19              159 
[1] "GP2 MUTATION ANALYSIS"
[1] 3
  GP2 MUTATED GP2 WILD-TYPE 
           11           167 
  GP2 MUTATED GP2 WILD-TYPE 
           11           167 
[1] "CCDC85A MUTATION ANALYSIS"
[1] 3
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               169 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               169 
[1] "OR2T3 MUTATION ANALYSIS"
[1] 3
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              6             172 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              6             172 
[1] "EIF3E MUTATION ANALYSIS"
[1] 3
  EIF3E MUTATED EIF3E WILD-TYPE 
              5             173 
  EIF3E MUTATED EIF3E WILD-TYPE 
              5             173 
[1] "PRR23B MUTATION ANALYSIS"
[1] 3
  PRR23B MUTATED PRR23B WILD-TYPE 
               9              169 
  PRR23B MUTATED PRR23B WILD-TYPE 
               9              169 
[1] "RTN1 MUTATION ANALYSIS"
[1] 3
  RTN1 MUTATED RTN1 WILD-TYPE 
            12            166 
  RTN1 MUTATED RTN1 WILD-TYPE 
            12            166 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "STOPPEDSMOKINGYEAR"                    
[19] "TOBACCOSMOKINGHISTORYINDICATOR"        
[20] "YEAROFTOBACCOSMOKINGONSET"             
[21] "BATCHNUMBER"                           

Input Data has 21 rows and 178 columns.

[1] "Batch" "21"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
        3516         1426         1852         1058          473          283 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
         962          908          656          329          223          131 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
          53          429          822          622         1067          734 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
        1161         1057          399          587          358          964 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
        1974         1932          444         1345           24         2170 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
         357          915         1912         1713          505         2524 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        3469         2979         1311         5286         3149         4299 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
         428           NA           80         1874          999         1528 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
        1575          994           NA          329          235          428 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
         698          168           NA          120           13          238 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
         207           12          103         2253         1360         2086 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
          NA         2130         1848           52          740           59 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
         832          474         1084           24          544          550 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
         352          573          258          213          183           85 
TCGA-43-6771 TCGA-46-3765 TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 TCGA-46-3769 
          NA           NA           NA           NA           NA           NA 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
          29           18           12           12           63          880 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
           3           NA           62           31          311          660 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
        2082         1505         1685          888          274         1456 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
        1075          931           96          793          733          693 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 TCGA-63-5131 TCGA-63-6202 
          37          719          358           NA           NA           NA 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
         516         1311          641           30           61           28 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
          30           30          638          761           30           61 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
          31           61           61          700          578           92 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
          61          578          366          121          365          759 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
          59          790         1217          699          123          153 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-70-6722 
         913          306         1645          122         1492           NA 
TCGA-70-6723 TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 
          NA           NA           11           24 
Variable 1:'AGE':	nDistinctValues=37,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=69,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=142,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=128,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'STOPPEDSMOKINGYEAR':	nDistinctValues=39,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'TOBACCOSMOKINGHISTORYINDICATOR':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=40,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'BATCH.NUMBER':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "GENDER"                                
 [3] "KARNOFSKY.PERFORMANCE.SCORE"           
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "STOPPEDSMOKINGYEAR"                    
[12] "TOBACCOSMOKINGHISTORYINDICATOR"        
[13] "YEAROFTOBACCOSMOKINGONSET"             
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
 1  2  3  4 
97 38 38  3 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 178 columns, 1 survival variables, and 13 non-survival variables.
AGE, nv=37, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 36 116  14  12 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 36 116  14  12 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 36 116  14  12 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 36 116  14  12 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
117  39  17   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
117  39  17   5 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
117  39  17   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
117  39  17   5 
PATHOLOGICSPREAD(M), nv=3, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE$',vnm)"
vv
  I  II III  IV 
 97  38  38   3 
[1] "table(vv)"
vv
     I     II III+IV 
    97     38     41 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 97  38  38   3 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


     I     II III+IV 
    97     38     41 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=56, binary=FALSE, numeric=TRUE
STOPPEDSMOKINGYEAR, nv=39, binary=FALSE, numeric=TRUE
TOBACCOSMOKINGHISTORYINDICATOR, nv=4, binary=FALSE, numeric=FALSE
YEAROFTOBACCOSMOKINGONSET, nv=40, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CDKN2A MUTATION ANALYSIS
D1V1, survival
                  sevent
clus2               0  1
  CDKN2A MUTATED   11 14
  CDKN2A WILD-TYPE 86 56
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              25              142 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              14               56 
$`CDKN2A MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3416 TCGA-21-5786 TCGA-21-5787 
        4.47        46.52        11.34        28.34        21.57        10.82 
TCGA-22-1012 TCGA-22-4593 TCGA-22-4599 TCGA-22-5477 TCGA-22-5492 TCGA-33-4538 
       14.10        35.08        38.17        44.22        16.60        97.94 
TCGA-34-2596 TCGA-34-5231 TCGA-37-4135 TCGA-39-5027 TCGA-39-5028 TCGA-43-3394 
        2.63        50.24         6.81        60.76         1.71        11.57 
TCGA-51-4080 TCGA-60-2698 TCGA-60-2725 TCGA-60-2726 TCGA-66-2786 TCGA-66-2787 
        0.39        10.22        23.64        11.77        25.97        40.01 
TCGA-66-2792 
       30.02 

$`CDKN2A WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46         4.80        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16       115.59        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-22-0944 TCGA-22-1002 
       15.55         9.30        31.63        29.85         7.33         4.31 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
        1.74        27.02        20.45        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       14.07        19.76        61.61        32.84        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         7.82         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 
       74.07        44.71        68.58        55.17        70.03        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.42         9.96         0.95         0.59         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
        1.94        22.98         4.04         5.03        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  CDKN2A MUTATED CDKN2A WILD-TYPE 
            0.39             0.10 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           97.94           173.79 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
           21.57            17.42 
[1] "0.4 - 97.9 (21.6)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED"   "CDKN2A MUTATED" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CDKN2A WILD-TYPE"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
  "CDKN2A MUTATED"   "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE"   "CDKN2A MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "CDKN2A MUTATED" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" "CDKN2A WILD-TYPE" 
[1] "hr=" "1.4"
D1V2, continuous
D1V3, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     6  20
  CDKN2A WILD-TYPE  41 111
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      6   20
  CDKN2A WILD-TYPE   41  111
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  FEMALE              6               41
  MALE               20              111
D1V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CDKN2A MUTATED                                       1
  CDKN2A WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CDKN2A MUTATED                                        0
  CDKN2A WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CDKN2A MUTATED                                                            25
  CDKN2A WILD-TYPE                                                         147
D1V5, multiclass
                                                             clus
vv                                                            CDKN2A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             25
                                                             clus
vv                                                            CDKN2A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              147
                  vv
clus               T1 T2 T3 T4
  CDKN2A MUTATED    5 19  0  2
  CDKN2A WILD-TYPE 31 97 14 10
D1V6, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  T1              5               31
  T2             19               97
  T3              0               14
  T4              2               10
                  vv
clus                N0  N1  N2  N3
  CDKN2A MUTATED    15   7   4   0
  CDKN2A WILD-TYPE 102  32  13   5
D1V7, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  N0             15              102
  N1              7               32
  N2              4               13
  N3              0                5
                  vv
clus                M0  M1  MX
  CDKN2A MUTATED    25   0   0
  CDKN2A WILD-TYPE 140   3   6
D1V8, multiclass
    clus
vv   CDKN2A MUTATED CDKN2A WILD-TYPE
  M0             25              140
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  CDKN2A MUTATED   13  6      7
  CDKN2A WILD-TYPE 84 32     34
D1V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  I                  13               84
  II                  6               32
  III+IV              7               34
D1V10, binary
                  cls
clus                 0   1
  CDKN2A MUTATED     1  25
  CDKN2A WILD-TYPE   3 149
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CDKN2A MUTATED      1   25
  CDKN2A WILD-TYPE    3  149
     clus
vv    CDKN2A MUTATED CDKN2A WILD-TYPE
  NO               1                3
  YES             25              149
D1V11, continuous
D1V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CDKN2A MUTATED                                            11
  CDKN2A WILD-TYPE                                          83
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CDKN2A MUTATED                                        7              7
  CDKN2A WILD-TYPE                                     36             21
                  vv
clus               LIFELONG NON-SMOKER
  CDKN2A MUTATED                     1
  CDKN2A WILD-TYPE                   7
D1V13, multiclass
                                             clus
vv                                            CDKN2A MUTATED CDKN2A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   7               36
  CURRENT SMOKER                                           7               21
  LIFELONG NON-SMOKER                                      1                7
D1V14, continuous

Clustering(2) Variable = PIK3CA MUTATION ANALYSIS
D2V1, survival
                  sevent
clus2               0  1
  PIK3CA MUTATED   11 14
  PIK3CA WILD-TYPE 86 56
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              25              142 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              14               56 
$`PIK3CA MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3414 TCGA-18-5595 TCGA-21-1071 TCGA-21-1078 
        4.47         4.80        13.02        27.16        46.88        15.55 
TCGA-21-5782 TCGA-22-4613 TCGA-22-5473 TCGA-22-5489 TCGA-22-5491 TCGA-33-4547 
       31.63        11.77        63.52        62.86        56.32        43.10 
TCGA-33-4583 TCGA-34-5232 TCGA-37-3783 TCGA-37-5819 TCGA-51-4079 TCGA-60-2724 
      141.34        51.78         3.95         3.39         0.39         1.22 
TCGA-60-2726 TCGA-66-2755 TCGA-66-2759 TCGA-66-2766 TCGA-66-2773 TCGA-66-2785 
       11.77         0.92        25.02         1.02         3.02         1.94 
TCGA-85-6560 
        0.36 

$`PIK3CA WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
       12.16        81.07        79.46        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1081 
       90.51         3.02       115.59        60.89        34.78         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       34.75        13.12        19.30        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 
       44.22         0.79        71.34        11.74        30.08        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 
       82.98       114.05        97.94       173.79       103.53        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 
       19.76         2.63        61.61        32.84        50.24        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        4.96         0.43         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       24.10        22.78        23.64        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
        0.99         2.01         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        2.01         2.01         2.01        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       54.08         4.01        49.05         0.79 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            0.36             0.10 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
          141.34           173.79 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           11.77            18.92 
[1] "0.4 - 141.3 (11.8)" "0.1 - 173.8 (18.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.6"
D2V2, continuous
D2V3, binary
                  cls
clus                 0   1
  PIK3CA MUTATED     4  23
  PIK3CA WILD-TYPE  43 108
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      4   23
  PIK3CA WILD-TYPE   43  108
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE              4               43
  MALE               23              108
D2V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PIK3CA MUTATED                                       0
  PIK3CA WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PIK3CA MUTATED                                        0
  PIK3CA WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PIK3CA MUTATED                                                            27
  PIK3CA WILD-TYPE                                                         145
D2V5, multiclass
                                                             clus
vv                                                            PIK3CA MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             27
                                                             clus
vv                                                            PIK3CA WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              145
                  vv
clus                T1  T2  T3  T4
  PIK3CA MUTATED     6  15   5   1
  PIK3CA WILD-TYPE  30 101   9  11
D2V6, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  T1              6               30
  T2             15              101
  T3              5                9
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  PIK3CA MUTATED    17   6   4   0
  PIK3CA WILD-TYPE 100  33  13   5
D2V7, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  N0             17              100
  N1              6               33
  N2              4               13
  N3              0                5
                  vv
clus                M0  M1  MX
  PIK3CA MUTATED    25   1   0
  PIK3CA WILD-TYPE 140   2   6
D2V8, multiclass
    clus
vv   PIK3CA MUTATED PIK3CA WILD-TYPE
  M0             25              140
  M1              1                2
  MX              0                6
                  vv
clus                I II III+IV
  PIK3CA MUTATED   16  2      9
  PIK3CA WILD-TYPE 81 36     32
D2V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  I                  16               81
  II                  2               36
  III+IV              9               32
D2V10, binary
                  cls
clus                 0   1
  PIK3CA MUTATED     0  27
  PIK3CA WILD-TYPE   4 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED      0   27
  PIK3CA WILD-TYPE    4  147
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO               0                4
  YES             27              147
D2V11, continuous
D2V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PIK3CA MUTATED                                            11
  PIK3CA WILD-TYPE                                          83
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PIK3CA MUTATED                                       10              2
  PIK3CA WILD-TYPE                                     33             26
                  vv
clus               LIFELONG NON-SMOKER
  PIK3CA MUTATED                     2
  PIK3CA WILD-TYPE                   6
D2V13, multiclass
                                             clus
vv                                            PIK3CA MUTATED PIK3CA WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  10               33
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      2                6
D2V14, continuous

Clustering(3) Variable = NFE2L2 MUTATION ANALYSIS
D3V1, survival
                  sevent
clus2               0  1
  NFE2L2 MUTATED   14 12
  NFE2L2 WILD-TYPE 83 58
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              26              141 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
              12               58 
$`NFE2L2 MUTATED`
TCGA-18-3411 TCGA-18-3415 TCGA-18-4721 TCGA-18-5592 TCGA-21-1071 TCGA-22-5473 
       46.52        59.51        90.51         3.02        46.88        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5482 TCGA-33-4586 TCGA-34-2596 TCGA-34-2608 
       14.60        44.22        11.74        14.07         2.63        32.84 
TCGA-34-5236 TCGA-34-5240 TCGA-37-4135 TCGA-39-5022 TCGA-46-3768 TCGA-51-4079 
        9.04         7.73         6.81        55.17         9.96         0.39 
TCGA-51-4081 TCGA-56-5897 TCGA-60-2709 TCGA-66-2766 TCGA-66-2770 TCGA-66-2783 
        2.07         0.10        49.48         1.02        23.01        24.95 
TCGA-66-2787 TCGA-66-2795 
       40.01         4.01 

$`NFE2L2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
        2.79        27.16       115.59        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
        9.30        31.63        29.85        21.57        10.82         7.33 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        4.31         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 
       31.69        64.90         0.79        71.34        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2600 TCGA-34-5231 
      173.79       103.53       141.34        19.76        61.61        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       51.78        32.68        10.82        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         7.82         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 
        6.02         2.79         5.42         0.95         0.59         0.39 
TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       28.93         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01         2.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
            0.10             0.36 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
           90.51           173.79 
  NFE2L2 MUTATED NFE2L2 WILD-TYPE 
          14.335           18.080 
[1] "0.1 - 90.5 (14.3)"  "0.4 - 173.8 (18.1)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "NFE2L2 MUTATED"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "NFE2L2 MUTATED" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE"   "NFE2L2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" "NFE2L2 WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
D3V3, binary
                  cls
clus                 0   1
  NFE2L2 MUTATED     4  23
  NFE2L2 WILD-TYPE  43 108
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NFE2L2 MUTATED      4   23
  NFE2L2 WILD-TYPE   43  108
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  FEMALE              4               43
  MALE               23              108
D3V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  NFE2L2 MUTATED                                       1
  NFE2L2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  NFE2L2 MUTATED                                        0
  NFE2L2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NFE2L2 MUTATED                                                            26
  NFE2L2 WILD-TYPE                                                         146
D3V5, multiclass
                                                             clus
vv                                                            NFE2L2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             26
                                                             clus
vv                                                            NFE2L2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              146
                  vv
clus               T1 T2 T3 T4
  NFE2L2 MUTATED    5 17  4  1
  NFE2L2 WILD-TYPE 31 99 10 11
D3V6, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  T1              5               31
  T2             17               99
  T3              4               10
  T4              1               11
                  vv
clus               N0 N1 N2 N3
  NFE2L2 MUTATED   18  5  3  1
  NFE2L2 WILD-TYPE 99 34 14  4
D3V7, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  N0             18               99
  N1              5               34
  N2              3               14
  N3              1                4
                  vv
clus                M0  M1  MX
  NFE2L2 MUTATED    24   0   2
  NFE2L2 WILD-TYPE 141   3   4
D3V8, multiclass
    clus
vv   NFE2L2 MUTATED NFE2L2 WILD-TYPE
  M0             24              141
  M1              0                3
  MX              2                4
                  vv
clus                I II III+IV
  NFE2L2 MUTATED   15  5      7
  NFE2L2 WILD-TYPE 82 33     34
D3V9, multiclass
        clus
vv       NFE2L2 MUTATED NFE2L2 WILD-TYPE
  I                  15               82
  II                  5               33
  III+IV              7               34
D3V10, binary
                  cls
clus                 0   1
  NFE2L2 MUTATED     0  27
  NFE2L2 WILD-TYPE   4 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  NFE2L2 MUTATED      0   27
  NFE2L2 WILD-TYPE    4  147
     clus
vv    NFE2L2 MUTATED NFE2L2 WILD-TYPE
  NO               0                4
  YES             27              147
D3V11, continuous
D3V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NFE2L2 MUTATED                                            11
  NFE2L2 WILD-TYPE                                          83
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NFE2L2 MUTATED                                        8              7
  NFE2L2 WILD-TYPE                                     35             21
                  vv
clus               LIFELONG NON-SMOKER
  NFE2L2 MUTATED                     0
  NFE2L2 WILD-TYPE                   8
D3V13, multiclass
                                             clus
vv                                            NFE2L2 MUTATED NFE2L2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             11               83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   8               35
  CURRENT SMOKER                                           7               21
  LIFELONG NON-SMOKER                                      0                8
D3V14, continuous

Clustering(4) Variable = TP53 MUTATION ANALYSIS
D4V1, survival
                sevent
clus2             0  1
  TP53 MUTATED   83 51
  TP53 WILD-TYPE 14 19
  TP53 MUTATED TP53 WILD-TYPE 
           134             33 
  TP53 MUTATED TP53 WILD-TYPE 
            51             19 
$`TP53 MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-5592 TCGA-21-1076 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
        2.79         3.02        60.89        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
       10.82         7.33         1.74        14.10        27.02        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       31.69        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 
       14.07        19.76         2.63        61.61        32.84        51.78 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82         7.73        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-3394 
       24.33        27.35        15.58        35.64         0.79        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 
       18.84         8.48         7.00         2.79         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 
        2.04         1.02        10.22        21.70        68.45        55.40 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       29.19        47.87        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       22.78         1.22        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2777 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        2.01        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

$`TP53 WILD-TYPE`
TCGA-18-3412 TCGA-18-3417 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
       11.34        24.92        90.51        27.16       115.59        46.88 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-22-1002 TCGA-22-4591 TCGA-22-5472 
       34.78        15.55         9.30         4.31        20.45        64.90 
TCGA-34-5231 TCGA-34-5234 TCGA-34-5241 TCGA-39-5022 TCGA-39-5030 TCGA-39-5039 
       50.24        32.68        14.07        55.17         1.94        17.88 
TCGA-43-2578 TCGA-43-6647 TCGA-43-6771 TCGA-60-2709 TCGA-60-2712 TCGA-60-2715 
       18.08         6.02         5.42        49.48         9.01        35.34 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
       23.64        11.77        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2785 TCGA-66-2789 
        3.98         1.94         4.04 

  TP53 MUTATED TP53 WILD-TYPE 
          0.10           1.94 
  TP53 MUTATED TP53 WILD-TYPE 
        173.79         115.59 
  TP53 MUTATED TP53 WILD-TYPE 
         16.78          18.08 
[1] "0.1 - 173.8 (16.8)" "1.9 - 115.6 (18.1)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" 
[1] "hr=" "1.5"
D4V2, continuous
D4V3, binary
                cls
clus               0   1
  TP53 MUTATED    37 104
  TP53 WILD-TYPE  10  27
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     37  104
  TP53 WILD-TYPE   10   27
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           37             10
  MALE            104             27
D4V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TP53 MUTATED                                       5
  TP53 WILD-TYPE                                     0
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TP53 MUTATED                                        1
  TP53 WILD-TYPE                                      0
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TP53 MUTATED                                                           135
  TP53 WILD-TYPE                                                          37
D4V5, multiclass
                                                             clus
vv                                                            TP53 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          135
                                                             clus
vv                                                            TP53 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             37
                vv
clus             T1 T2 T3 T4
  TP53 MUTATED   27 92 10 12
  TP53 WILD-TYPE  9 24  4  0
D4V6, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  T1           27              9
  T2           92             24
  T3           10              4
  T4           12              0
                vv
clus             N0 N1 N2 N3
  TP53 MUTATED   92 31 15  3
  TP53 WILD-TYPE 25  8  2  2
D4V7, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  N0           92             25
  N1           31              8
  N2           15              2
  N3            3              2
                vv
clus              M0  M1  MX
  TP53 MUTATED   132   2   3
  TP53 WILD-TYPE  33   1   3
D4V8, multiclass
    clus
vv   TP53 MUTATED TP53 WILD-TYPE
  M0          132             33
  M1            2              1
  MX            3              3
                vv
clus              I II III+IV
  TP53 MUTATED   75 30     34
  TP53 WILD-TYPE 22  8      7
D4V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  I                75             22
  II               30              8
  III+IV           34              7
D4V10, binary
                cls
clus               0   1
  TP53 MUTATED     4 137
  TP53 WILD-TYPE   0  37
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED      4  137
  TP53 WILD-TYPE    0   37
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO             4              0
  YES          137             37
D4V11, continuous
D4V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TP53 MUTATED                                            76
  TP53 WILD-TYPE                                          18
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TP53 MUTATED                                       32             24
  TP53 WILD-TYPE                                     11              4
                vv
clus             LIFELONG NON-SMOKER
  TP53 MUTATED                     4
  TP53 WILD-TYPE                   4
D4V13, multiclass
                                             clus
vv                                            TP53 MUTATED TP53 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           76             18
  CURRENT REFORMED SMOKER FOR > 15 YEARS                32             11
  CURRENT SMOKER                                        24              4
  LIFELONG NON-SMOKER                                    4              4
D4V14, continuous

Clustering(5) Variable = TPTE MUTATION ANALYSIS
D5V1, survival
                sevent
clus2             0  1
  TPTE MUTATED   14  8
  TPTE WILD-TYPE 83 62
  TPTE MUTATED TPTE WILD-TYPE 
            22            145 
  TPTE MUTATED TPTE WILD-TYPE 
             8             62 
$`TPTE MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3416 TCGA-18-3421 TCGA-18-5592 TCGA-22-4599 
       79.46         4.80        28.34        43.76         3.02        38.17 
TCGA-22-4613 TCGA-22-5473 TCGA-22-5482 TCGA-22-5492 TCGA-39-5016 TCGA-43-5668 
       11.77        63.52        11.74        16.60        74.07         8.48 
TCGA-46-6026 TCGA-51-4080 TCGA-56-6545 TCGA-60-2722 TCGA-60-2726 TCGA-66-2742 
        0.59         0.39         2.04        24.10        11.77        21.07 
TCGA-66-2757 TCGA-66-2766 TCGA-66-2783 TCGA-66-2795 
        0.99         1.02        24.95         4.01 

$`TPTE WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       59.51        24.92         1.61         6.15         2.79        90.51 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       27.16       115.59        46.88        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 
        9.30        31.63        29.85        21.57        10.82         7.33 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        4.31         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       24.13        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22         0.79        71.34        30.08        62.86 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 
        0.43         7.82         6.81         0.39         3.39        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 
        5.42         9.96         0.95         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
        3.16        26.07        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 
       43.10         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         0.99         2.01         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 
        5.03        30.02        10.06        54.08        49.05         0.36 
TCGA-85-6561 
        0.79 

  TPTE MUTATED TPTE WILD-TYPE 
          0.39           0.10 
  TPTE MUTATED TPTE WILD-TYPE 
         79.46         173.79 
  TPTE MUTATED TPTE WILD-TYPE 
         11.77          18.84 
[1] "0.4 - 79.5 (11.8)"  "0.1 - 173.8 (18.8)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"TPTE WILD-TYPE"   "TPTE MUTATED" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE"   "TPTE MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"TPTE WILD-TYPE" "TPTE WILD-TYPE" "TPTE WILD-TYPE" 
[1] "hr=" "1"  
D5V2, continuous
D5V3, binary
                cls
clus               0   1
  TPTE MUTATED     6  18
  TPTE WILD-TYPE  41 113
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      6   18
  TPTE WILD-TYPE   41  113
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  FEMALE            6             41
  MALE             18            113
D5V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TPTE MUTATED                                       3
  TPTE WILD-TYPE                                     2
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TPTE MUTATED                                        0
  TPTE WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TPTE MUTATED                                                            21
  TPTE WILD-TYPE                                                         151
D5V5, multiclass
                                                             clus
vv                                                            TPTE MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           21
                                                             clus
vv                                                            TPTE WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            151
                vv
clus              T1  T2  T3  T4
  TPTE MUTATED     5  13   3   3
  TPTE WILD-TYPE  31 103  11   9
D5V6, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  T1            5             31
  T2           13            103
  T3            3             11
  T4            3              9
                vv
clus              N0  N1  N2  N3
  TPTE MUTATED    12   9   2   1
  TPTE WILD-TYPE 105  30  15   4
D5V7, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  N0           12            105
  N1            9             30
  N2            2             15
  N3            1              4
                vv
clus              M0  M1  MX
  TPTE MUTATED    22   1   0
  TPTE WILD-TYPE 143   2   6
D5V8, multiclass
    clus
vv   TPTE MUTATED TPTE WILD-TYPE
  M0           22            143
  M1            1              2
  MX            0              6
                vv
clus              I II III+IV
  TPTE MUTATED    8  8      7
  TPTE WILD-TYPE 89 30     34
D5V9, multiclass
        clus
vv       TPTE MUTATED TPTE WILD-TYPE
  I                 8             89
  II                8             30
  III+IV            7             34
D5V10, binary
                cls
clus               0   1
  TPTE MUTATED     1  23
  TPTE WILD-TYPE   3 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  TPTE MUTATED      1   23
  TPTE WILD-TYPE    3  151
     clus
vv    TPTE MUTATED TPTE WILD-TYPE
  NO             1              3
  YES           23            151
D5V11, continuous
D5V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TPTE MUTATED                                            13
  TPTE WILD-TYPE                                          81
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TPTE MUTATED                                        9              2
  TPTE WILD-TYPE                                     34             26
                vv
clus             LIFELONG NON-SMOKER
  TPTE MUTATED                     0
  TPTE WILD-TYPE                   8
D5V13, multiclass
                                             clus
vv                                            TPTE MUTATED TPTE WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           13             81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 9             34
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D5V14, continuous

Clustering(6) Variable = KEAP1 MUTATION ANALYSIS
D6V1, survival
                 sevent
clus2              0  1
  KEAP1 MUTATED   16  6
  KEAP1 WILD-TYPE 81 64
  KEAP1 MUTATED KEAP1 WILD-TYPE 
             22             145 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
              6              64 
$`KEAP1 MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-5595 TCGA-21-1077 TCGA-22-4599 TCGA-33-4532 
        4.47        79.46        27.16        34.78        38.17        82.98 
TCGA-33-4538 TCGA-37-4133 TCGA-37-5819 TCGA-39-5031 TCGA-39-5036 TCGA-43-2578 
       97.94         7.82         3.39        27.35        35.64        18.08 
TCGA-43-6143 TCGA-46-6025 TCGA-51-4081 TCGA-60-2710 TCGA-60-2722 TCGA-60-2723 
        7.00         0.95         2.07        55.40        24.10        22.78 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2773 TCGA-66-2777 
        2.01         0.99         3.02         2.01 

$`KEAP1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        2.79        90.51         3.02       115.59        46.88        60.89 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
       15.55         9.30        31.63        29.85        21.57        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       35.08        24.13        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         0.43         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
        1.71        24.33         1.94        15.58         0.79        17.88 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         8.48         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 
        9.96         0.59         0.39         0.39        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       26.07         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
       21.07         0.99         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
       19.00        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  KEAP1 MUTATED KEAP1 WILD-TYPE 
           0.95            0.10 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          97.94          173.79 
  KEAP1 MUTATED KEAP1 WILD-TYPE 
          20.43           16.96 
[1] "0.9 - 97.9 (20.4)"  "0.1 - 173.8 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KEAP1 WILD-TYPE"   "KEAP1 MUTATED"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" "KEAP1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE"   "KEAP1 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "KEAP1 MUTATED" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" "KEAP1 WILD-TYPE" 
[1] "hr=" "1.6"
D6V2, continuous
D6V3, binary
                 cls
clus                0   1
  KEAP1 MUTATED     5  17
  KEAP1 WILD-TYPE  42 114
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      5   17
  KEAP1 WILD-TYPE   42  114
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  FEMALE             5              42
  MALE              17             114
D6V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  KEAP1 MUTATED                                       2
  KEAP1 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  KEAP1 MUTATED                                        0
  KEAP1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KEAP1 MUTATED                                                            20
  KEAP1 WILD-TYPE                                                         152
D6V5, multiclass
                                                             clus
vv                                                            KEAP1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            20
                                                             clus
vv                                                            KEAP1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             152
                 vv
clus               T1  T2  T3  T4
  KEAP1 MUTATED     4  16   0   2
  KEAP1 WILD-TYPE  32 100  14  10
D6V6, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  T1             4              32
  T2            16             100
  T3             0              14
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  KEAP1 MUTATED    14   5   3   0
  KEAP1 WILD-TYPE 103  34  14   5
D6V7, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  N0            14             103
  N1             5              34
  N2             3              14
  N3             0               5
                 vv
clus               M0  M1  MX
  KEAP1 MUTATED    22   0   0
  KEAP1 WILD-TYPE 143   3   6
D6V8, multiclass
    clus
vv   KEAP1 MUTATED KEAP1 WILD-TYPE
  M0            22             143
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  KEAP1 MUTATED   11  5      5
  KEAP1 WILD-TYPE 86 33     36
D6V9, multiclass
        clus
vv       KEAP1 MUTATED KEAP1 WILD-TYPE
  I                 11              86
  II                 5              33
  III+IV             5              36
D6V10, binary
                 cls
clus                0   1
  KEAP1 MUTATED     0  22
  KEAP1 WILD-TYPE   4 152
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KEAP1 MUTATED      0   22
  KEAP1 WILD-TYPE    4  152
     clus
vv    KEAP1 MUTATED KEAP1 WILD-TYPE
  NO              0               4
  YES            22             152
D6V11, continuous
D6V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KEAP1 MUTATED                                            12
  KEAP1 WILD-TYPE                                          82
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KEAP1 MUTATED                                        5              4
  KEAP1 WILD-TYPE                                     38             24
                 vv
clus              LIFELONG NON-SMOKER
  KEAP1 MUTATED                     1
  KEAP1 WILD-TYPE                   7
D6V13, multiclass
                                             clus
vv                                            KEAP1 MUTATED KEAP1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     1               7
D6V14, continuous

Clustering(7) Variable = SI MUTATION ANALYSIS
D7V1, survival
              sevent
clus2           0  1
  SI MUTATED   18 14
  SI WILD-TYPE 79 56
  SI MUTATED SI WILD-TYPE 
          32          135 
  SI MUTATED SI WILD-TYPE 
          14           56 
$`SI MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3412 TCGA-18-3419 TCGA-18-4083 TCGA-21-1078 
       12.16        79.46        11.34         1.61         6.15        15.55 
TCGA-21-5787 TCGA-22-5473 TCGA-33-4566 TCGA-33-4586 TCGA-34-2600 TCGA-34-5231 
       10.82        63.52       173.79        14.07        61.61        50.24 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5928 TCGA-39-5036 TCGA-43-3920 TCGA-46-3768 
       32.68         9.04         5.52        35.64        18.84         9.96 
TCGA-60-2698 TCGA-60-2713 TCGA-60-2722 TCGA-66-2727 TCGA-66-2756 TCGA-66-2758 
       10.22        47.87        24.10        16.96         0.99        20.98 
TCGA-66-2767 TCGA-66-2771 TCGA-66-2781 TCGA-66-2787 TCGA-66-2788 TCGA-66-2793 
        2.01        19.00         3.98        40.01        22.98        10.06 
TCGA-66-2795 TCGA-85-6560 
        4.01         0.36 

$`SI WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 
        4.47        81.07         4.80        46.52        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34        24.92        43.76         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1081 
       27.16       115.59        46.88        60.89        34.78         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 
       43.10       103.53       141.34        19.76         2.63        32.84 
TCGA-34-5232 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
       51.78        10.82         7.73        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 
        1.71        24.33         1.94        27.35        15.58         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.79         5.42         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        2.07        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 
       68.45        49.48        55.40        29.19         9.01        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       11.77        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        0.99        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       23.01         3.02         2.01        19.00        12.03        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       24.95         1.94        25.97         4.04         5.03        30.02 
TCGA-66-2794 TCGA-66-2800 TCGA-85-6561 
       54.08        49.05         0.79 

  SI MUTATED SI WILD-TYPE 
        0.36         0.10 
  SI MUTATED SI WILD-TYPE 
      173.79       141.34 
  SI MUTATED SI WILD-TYPE 
       14.81        19.00 
[1] "0.4 - 173.8 (14.8)" "0.1 - 141.3 (19.0)"
  TCGA-18-3406   TCGA-18-3407   TCGA-18-3408   TCGA-18-3409   TCGA-18-3410 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3411   TCGA-18-3412   TCGA-18-3414   TCGA-18-3415   TCGA-18-3416 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-18-3417   TCGA-18-3419   TCGA-18-3421   TCGA-18-4083   TCGA-18-4086 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-4721   TCGA-18-5592   TCGA-18-5595   TCGA-21-1070   TCGA-21-1071 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-1076   TCGA-21-1077   TCGA-21-1078   TCGA-21-1081   TCGA-21-5782 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-5784   TCGA-21-5786   TCGA-21-5787   TCGA-22-0944   TCGA-22-1002 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-1011   TCGA-22-1012   TCGA-22-1016   TCGA-22-4591   TCGA-22-4593 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4595   TCGA-22-4599   TCGA-22-4601   TCGA-22-4604   TCGA-22-4607 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4613   TCGA-22-5471   TCGA-22-5472   TCGA-22-5473   TCGA-22-5474 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-22-5477   TCGA-22-5478   TCGA-22-5480   TCGA-22-5482   TCGA-22-5485 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-5489   TCGA-22-5491   TCGA-22-5492   TCGA-33-4532   TCGA-33-4533 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4538   TCGA-33-4547   TCGA-33-4566   TCGA-33-4582   TCGA-33-4583 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4586   TCGA-33-6737   TCGA-34-2596   TCGA-34-2600   TCGA-34-2608 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5231   TCGA-34-5232   TCGA-34-5234   TCGA-34-5236   TCGA-34-5239 
  "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5240   TCGA-34-5241   TCGA-34-5927   TCGA-34-5928   TCGA-34-5929 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-37-3783   TCGA-37-3789   TCGA-37-4133   TCGA-37-4135   TCGA-37-4141 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-37-5819   TCGA-39-5016   TCGA-39-5019   TCGA-39-5021   TCGA-39-5022 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5024   TCGA-39-5027   TCGA-39-5028   TCGA-39-5029   TCGA-39-5030 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5031   TCGA-39-5035   TCGA-39-5036   TCGA-39-5037   TCGA-39-5039 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-2578   TCGA-43-3394   TCGA-43-3920   TCGA-43-5668   TCGA-43-6143 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-6647   TCGA-43-6770   TCGA-43-6771   TCGA-46-3768   TCGA-46-6025 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-46-6026   TCGA-51-4079   TCGA-51-4080   TCGA-51-4081   TCGA-56-1622 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-56-5897   TCGA-56-6545   TCGA-56-6546   TCGA-60-2698   TCGA-60-2707 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-60-2708   TCGA-60-2709   TCGA-60-2710   TCGA-60-2711   TCGA-60-2712 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2713   TCGA-60-2715   TCGA-60-2719   TCGA-60-2720   TCGA-60-2721 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2722   TCGA-60-2723   TCGA-60-2724   TCGA-60-2725   TCGA-60-2726 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2727   TCGA-66-2734   TCGA-66-2742   TCGA-66-2744   TCGA-66-2754 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2755   TCGA-66-2756   TCGA-66-2757   TCGA-66-2758   TCGA-66-2759 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2763   TCGA-66-2765   TCGA-66-2766   TCGA-66-2767   TCGA-66-2768 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2770   TCGA-66-2771   TCGA-66-2773   TCGA-66-2777   TCGA-66-2778 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2780   TCGA-66-2781   TCGA-66-2782   TCGA-66-2783   TCGA-66-2785 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2786   TCGA-66-2787   TCGA-66-2788   TCGA-66-2789   TCGA-66-2791 
"SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2792   TCGA-66-2793   TCGA-66-2794   TCGA-66-2795   TCGA-66-2800 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-85-6560   TCGA-85-6561 
  "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3406   TCGA-18-3407   TCGA-18-3408   TCGA-18-3409   TCGA-18-3410 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3411   TCGA-18-3412   TCGA-18-3414   TCGA-18-3415   TCGA-18-3416 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-18-3417   TCGA-18-3419   TCGA-18-3421   TCGA-18-4083   TCGA-18-4086 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-4721   TCGA-18-5592   TCGA-18-5595   TCGA-21-1070   TCGA-21-1071 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-1076   TCGA-21-1077   TCGA-21-1078   TCGA-21-1081   TCGA-21-5782 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-5784   TCGA-21-5786   TCGA-21-5787   TCGA-22-0944   TCGA-22-1002 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-1011   TCGA-22-1012   TCGA-22-1016   TCGA-22-4591   TCGA-22-4593 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4595   TCGA-22-4599   TCGA-22-4601   TCGA-22-4604   TCGA-22-4607 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4613   TCGA-22-5471   TCGA-22-5472   TCGA-22-5473   TCGA-22-5474 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-22-5477   TCGA-22-5478   TCGA-22-5480   TCGA-22-5482   TCGA-22-5485 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-5489   TCGA-22-5491   TCGA-22-5492   TCGA-33-4532   TCGA-33-4533 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4538   TCGA-33-4547   TCGA-33-4566   TCGA-33-4582   TCGA-33-4583 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4586   TCGA-33-6737   TCGA-34-2596   TCGA-34-2600   TCGA-34-2608 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5231   TCGA-34-5232   TCGA-34-5234   TCGA-34-5236   TCGA-34-5239 
  "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5240   TCGA-34-5241   TCGA-34-5927   TCGA-34-5928   TCGA-34-5929 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-37-3783   TCGA-37-3789   TCGA-37-4133   TCGA-37-4135   TCGA-37-4141 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-37-5819   TCGA-39-5016   TCGA-39-5019   TCGA-39-5021   TCGA-39-5022 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5024   TCGA-39-5027   TCGA-39-5028   TCGA-39-5029   TCGA-39-5030 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5031   TCGA-39-5035   TCGA-39-5036   TCGA-39-5037   TCGA-39-5039 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-2578   TCGA-43-3394   TCGA-43-3920   TCGA-43-5668   TCGA-43-6143 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-6647   TCGA-43-6770   TCGA-43-6771   TCGA-46-3768   TCGA-46-6025 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-46-6026   TCGA-51-4079   TCGA-51-4080   TCGA-51-4081   TCGA-56-1622 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-56-5897   TCGA-56-6545   TCGA-56-6546   TCGA-60-2698   TCGA-60-2707 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-60-2708   TCGA-60-2709   TCGA-60-2710   TCGA-60-2711   TCGA-60-2712 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2713   TCGA-60-2715   TCGA-60-2719   TCGA-60-2720   TCGA-60-2721 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2722   TCGA-60-2723   TCGA-60-2724   TCGA-60-2725   TCGA-60-2726 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2727   TCGA-66-2734   TCGA-66-2742   TCGA-66-2744   TCGA-66-2754 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2755   TCGA-66-2756   TCGA-66-2757   TCGA-66-2758   TCGA-66-2759 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2763   TCGA-66-2765   TCGA-66-2766   TCGA-66-2767   TCGA-66-2768 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2770   TCGA-66-2771   TCGA-66-2773   TCGA-66-2777   TCGA-66-2778 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2780   TCGA-66-2781   TCGA-66-2782   TCGA-66-2783   TCGA-66-2785 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2786   TCGA-66-2787   TCGA-66-2788   TCGA-66-2789   TCGA-66-2791 
"SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2792   TCGA-66-2793   TCGA-66-2794   TCGA-66-2795   TCGA-66-2800 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-85-6560   TCGA-85-6561 
  "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3406   TCGA-18-3407   TCGA-18-3408   TCGA-18-3409   TCGA-18-3410 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-3411   TCGA-18-3412   TCGA-18-3414   TCGA-18-3415   TCGA-18-3416 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-18-3417   TCGA-18-3419   TCGA-18-3421   TCGA-18-4083   TCGA-18-4086 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-18-4721   TCGA-18-5592   TCGA-18-5595   TCGA-21-1070   TCGA-21-1071 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-1076   TCGA-21-1077   TCGA-21-1078   TCGA-21-1081   TCGA-21-5782 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-21-5784   TCGA-21-5786   TCGA-21-5787   TCGA-22-0944   TCGA-22-1002 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-1011   TCGA-22-1012   TCGA-22-1016   TCGA-22-4591   TCGA-22-4593 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4595   TCGA-22-4599   TCGA-22-4601   TCGA-22-4604   TCGA-22-4607 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-4613   TCGA-22-5471   TCGA-22-5472   TCGA-22-5473   TCGA-22-5474 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-22-5477   TCGA-22-5478   TCGA-22-5480   TCGA-22-5482   TCGA-22-5485 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-22-5489   TCGA-22-5491   TCGA-22-5492   TCGA-33-4532   TCGA-33-4533 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4538   TCGA-33-4547   TCGA-33-4566   TCGA-33-4582   TCGA-33-4583 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-33-4586   TCGA-33-6737   TCGA-34-2596   TCGA-34-2600   TCGA-34-2608 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5231   TCGA-34-5232   TCGA-34-5234   TCGA-34-5236   TCGA-34-5239 
  "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-34-5240   TCGA-34-5241   TCGA-34-5927   TCGA-34-5928   TCGA-34-5929 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-37-3783   TCGA-37-3789   TCGA-37-4133   TCGA-37-4135   TCGA-37-4141 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-37-5819   TCGA-39-5016   TCGA-39-5019   TCGA-39-5021   TCGA-39-5022 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5024   TCGA-39-5027   TCGA-39-5028   TCGA-39-5029   TCGA-39-5030 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-39-5031   TCGA-39-5035   TCGA-39-5036   TCGA-39-5037   TCGA-39-5039 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-2578   TCGA-43-3394   TCGA-43-3920   TCGA-43-5668   TCGA-43-6143 
"SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-43-6647   TCGA-43-6770   TCGA-43-6771   TCGA-46-3768   TCGA-46-6025 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-46-6026   TCGA-51-4079   TCGA-51-4080   TCGA-51-4081   TCGA-56-1622 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-56-5897   TCGA-56-6545   TCGA-56-6546   TCGA-60-2698   TCGA-60-2707 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-60-2708   TCGA-60-2709   TCGA-60-2710   TCGA-60-2711   TCGA-60-2712 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2713   TCGA-60-2715   TCGA-60-2719   TCGA-60-2720   TCGA-60-2721 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-60-2722   TCGA-60-2723   TCGA-60-2724   TCGA-60-2725   TCGA-60-2726 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2727   TCGA-66-2734   TCGA-66-2742   TCGA-66-2744   TCGA-66-2754 
  "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2755   TCGA-66-2756   TCGA-66-2757   TCGA-66-2758   TCGA-66-2759 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2763   TCGA-66-2765   TCGA-66-2766   TCGA-66-2767   TCGA-66-2768 
"SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-66-2770   TCGA-66-2771   TCGA-66-2773   TCGA-66-2777   TCGA-66-2778 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2780   TCGA-66-2781   TCGA-66-2782   TCGA-66-2783   TCGA-66-2785 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2786   TCGA-66-2787   TCGA-66-2788   TCGA-66-2789   TCGA-66-2791 
"SI WILD-TYPE"   "SI MUTATED"   "SI MUTATED" "SI WILD-TYPE" "SI WILD-TYPE" 
  TCGA-66-2792   TCGA-66-2793   TCGA-66-2794   TCGA-66-2795   TCGA-66-2800 
"SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE"   "SI MUTATED" "SI WILD-TYPE" 
  TCGA-85-6560   TCGA-85-6561 
  "SI MUTATED" "SI WILD-TYPE" 
[1] "hr=" "1"  
D7V2, continuous
D7V3, binary
              cls
clus            0  1
  SI MUTATED    4 32
  SI WILD-TYPE 43 99
[1] "tbl2"
              cls
clus           [,1] [,2]
  SI MUTATED      4   32
  SI WILD-TYPE   43   99
        clus
vv       SI MUTATED SI WILD-TYPE
  FEMALE          4           43
  MALE           32           99
D7V4, continuous
              vv
clus           LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SI MUTATED                                       1
  SI WILD-TYPE                                     4
              vv
clus           LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SI MUTATED                                        1
  SI WILD-TYPE                                      0
              vv
clus           LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SI MUTATED                                                            34
  SI WILD-TYPE                                                         138
D7V5, multiclass
                                                             clus
vv                                                            SI MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                               1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)         34
                                                             clus
vv                                                            SI WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          138
              vv
clus           T1 T2 T3 T4
  SI MUTATED    6 22  4  4
  SI WILD-TYPE 30 94 10  8
D7V6, multiclass
    clus
vv   SI MUTATED SI WILD-TYPE
  T1          6           30
  T2         22           94
  T3          4           10
  T4          4            8
              vv
clus           N0 N1 N2 N3
  SI MUTATED   23 10  2  1
  SI WILD-TYPE 94 29 15  4
D7V7, multiclass
    clus
vv   SI MUTATED SI WILD-TYPE
  N0         23           94
  N1         10           29
  N2          2           15
  N3          1            4
              vv
clus            M0  M1  MX
  SI MUTATED    36   0   0
  SI WILD-TYPE 129   3   6
D7V8, multiclass
    clus
vv   SI MUTATED SI WILD-TYPE
  M0         36          129
  M1          0            3
  MX          0            6
              vv
clus            I II III+IV
  SI MUTATED   17 10      8
  SI WILD-TYPE 80 28     33
D7V9, multiclass
        clus
vv       SI MUTATED SI WILD-TYPE
  I              17           80
  II             10           28
  III+IV          8           33
D7V10, binary
              cls
clus             0   1
  SI MUTATED     1  35
  SI WILD-TYPE   3 139
[1] "tbl2"
              cls
clus           [,1] [,2]
  SI MUTATED      1   35
  SI WILD-TYPE    3  139
     clus
vv    SI MUTATED SI WILD-TYPE
  NO           1            3
  YES         35          139
D7V11, continuous
D7V12, continuous
              vv
clus           CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SI MUTATED                                            25
  SI WILD-TYPE                                          69
              vv
clus           CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SI MUTATED                                        5              3
  SI WILD-TYPE                                     38             25
              vv
clus           LIFELONG NON-SMOKER
  SI MUTATED                     2
  SI WILD-TYPE                   6
D7V13, multiclass
                                             clus
vv                                            SI MUTATED SI WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS         25           69
  CURRENT REFORMED SMOKER FOR > 15 YEARS               5           38
  CURRENT SMOKER                                       3           25
  LIFELONG NON-SMOKER                                  2            6
D7V14, continuous

Clustering(8) Variable = PTEN MUTATION ANALYSIS
D8V1, survival
                sevent
clus2             0  1
  PTEN MUTATED   12  2
  PTEN WILD-TYPE 85 68
  PTEN MUTATED PTEN WILD-TYPE 
            14            153 
  PTEN MUTATED PTEN WILD-TYPE 
             2             68 
$`PTEN MUTATED`
TCGA-18-3417 TCGA-18-3421 TCGA-22-4599 TCGA-22-5489 TCGA-33-4583 TCGA-39-5024 
       24.92        43.76        38.17        62.86       141.34        70.03 
TCGA-39-5027 TCGA-43-2578 TCGA-43-3920 TCGA-56-5897 TCGA-56-6546 TCGA-60-2707 
       60.76        18.08        18.84         0.10         1.02        21.70 
TCGA-66-2783 TCGA-66-2788 
       24.95        22.98 

$`PTEN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 
       11.34        13.02        59.51        28.34         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       27.02        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 
       44.22         0.79        71.34        11.74        30.08        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       68.58        55.17         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-5668 
       15.58        35.64         0.79        17.88        11.57         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-6545 
        0.59         0.39         0.39         2.07        28.93         2.04 
TCGA-60-2698 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       10.22        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00         1.94        25.97        40.01 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  PTEN MUTATED PTEN WILD-TYPE 
          0.10           0.36 
  PTEN MUTATED PTEN WILD-TYPE 
        141.34         173.79 
  PTEN MUTATED PTEN WILD-TYPE 
        24.935         14.600 
[1] "0.1 - 141.3 (24.9)" "0.4 - 173.8 (14.6)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
[1] "hr=" "4.6"
D8V2, continuous
D8V3, binary
                cls
clus               0   1
  PTEN MUTATED     3  11
  PTEN WILD-TYPE  44 120
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      3   11
  PTEN WILD-TYPE   44  120
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE            3             44
  MALE             11            120
D8V4, continuous
[1] "Remove cluster labels:" "PTEN MUTATED"          
clus
  PTEN MUTATED PTEN WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4601     TCGA-22-4604 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5491     TCGA-22-5492     TCGA-34-5234 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PTEN MUTATED                                       0
  PTEN WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PTEN MUTATED                                        0
  PTEN WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PTEN MUTATED                                                            14
  PTEN WILD-TYPE                                                         158
D8V5, multiclass
                                                             clus
vv                                                            PTEN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           14
                                                             clus
vv                                                            PTEN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            158
                vv
clus              T1  T2  T3  T4
  PTEN MUTATED     4  10   0   0
  PTEN WILD-TYPE  32 106  14  12
D8V6, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  T1            4             32
  T2           10            106
  T3            0             14
  T4            0             12
                vv
clus              N0  N1  N2  N3
  PTEN MUTATED    11   1   1   1
  PTEN WILD-TYPE 106  38  16   4
D8V7, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  N0           11            106
  N1            1             38
  N2            1             16
  N3            1              4
                vv
clus              M0  M1  MX
  PTEN MUTATED    11   1   2
  PTEN WILD-TYPE 154   2   4
D8V8, multiclass
    clus
vv   PTEN MUTATED PTEN WILD-TYPE
  M0           11            154
  M1            1              2
  MX            2              4
                vv
clus              I II III+IV
  PTEN MUTATED   10  0      3
  PTEN WILD-TYPE 87 38     38
D8V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  I                10             87
  II                0             38
  III+IV            3             38
D8V10, binary
                cls
clus               0   1
  PTEN MUTATED     0  14
  PTEN WILD-TYPE   4 160
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED      0   14
  PTEN WILD-TYPE    4  160
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  NO             0              4
  YES           14            160
D8V11, continuous
D8V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PTEN MUTATED                                            10
  PTEN WILD-TYPE                                          84
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PTEN MUTATED                                        3              1
  PTEN WILD-TYPE                                     40             27
                vv
clus             LIFELONG NON-SMOKER
  PTEN MUTATED                     0
  PTEN WILD-TYPE                   8
D8V13, multiclass
                                             clus
vv                                            PTEN MUTATED PTEN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           10             84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             40
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D8V14, continuous

Clustering(9) Variable = TRIM58 MUTATION ANALYSIS
D9V1, survival
                  sevent
clus2               0  1
  TRIM58 MUTATED    9  5
  TRIM58 WILD-TYPE 88 65
  TRIM58 MUTATED TRIM58 WILD-TYPE 
              14              153 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               5               65 
$`TRIM58 MUTATED`
TCGA-21-1076 TCGA-22-1016 TCGA-22-4599 TCGA-33-4566 TCGA-37-5819 TCGA-39-5031 
       60.89        27.02        38.17       173.79         3.39        27.35 
TCGA-43-5668 TCGA-43-6143 TCGA-60-2708 TCGA-60-2724 TCGA-66-2734 TCGA-66-2773 
        8.48         7.00        68.45         1.22        43.10         3.02 
TCGA-66-2793 TCGA-85-6561 
       10.06         0.79 

$`TRIM58 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
      115.59        46.88        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       14.10        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         6.81         0.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       11.57        18.84         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 
        0.10         2.04         1.02        10.22        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10        22.78        23.64        11.77 
TCGA-66-2727 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        23.01        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       40.01        22.98         4.04         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  TRIM58 MUTATED TRIM58 WILD-TYPE 
            0.79             0.10 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
          173.79           141.34 
  TRIM58 MUTATED TRIM58 WILD-TYPE 
           18.54            17.88 
[1] "0.8 - 173.8 (18.5)" "0.1 - 141.3 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED"   "TRIM58 MUTATED" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TRIM58 WILD-TYPE"   "TRIM58 MUTATED" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE"   "TRIM58 MUTATED" 
[1] "hr=" "1.6"
D9V2, continuous
D9V3, binary
                  cls
clus                 0   1
  TRIM58 MUTATED     5  10
  TRIM58 WILD-TYPE  42 121
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      5   10
  TRIM58 WILD-TYPE   42  121
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  FEMALE              5               42
  MALE               10              121
D9V4, continuous
[1] "Remove cluster labels:" "TRIM58 MUTATED"        
clus
  TRIM58 MUTATED TRIM58 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-60-2698 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"TRIM58 WILD-TYPE" "TRIM58 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TRIM58 MUTATED                                       1
  TRIM58 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TRIM58 MUTATED                                        0
  TRIM58 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TRIM58 MUTATED                                                            14
  TRIM58 WILD-TYPE                                                         158
D9V5, multiclass
                                                             clus
vv                                                            TRIM58 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             14
                                                             clus
vv                                                            TRIM58 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              158
                  vv
clus                T1  T2  T3  T4
  TRIM58 MUTATED     2  11   1   1
  TRIM58 WILD-TYPE  34 105  13  11
D9V6, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  T1              2               34
  T2             11              105
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  TRIM58 MUTATED    10   4   1   0
  TRIM58 WILD-TYPE 107  35  16   5
D9V7, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  N0             10              107
  N1              4               35
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  TRIM58 MUTATED    15   0   0
  TRIM58 WILD-TYPE 150   3   6
D9V8, multiclass
    clus
vv   TRIM58 MUTATED TRIM58 WILD-TYPE
  M0             15              150
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  TRIM58 MUTATED    8  4      3
  TRIM58 WILD-TYPE 89 34     38
D9V9, multiclass
        clus
vv       TRIM58 MUTATED TRIM58 WILD-TYPE
  I                   8               89
  II                  4               34
  III+IV              3               38
D9V10, binary
                  cls
clus                 0   1
  TRIM58 MUTATED     0  15
  TRIM58 WILD-TYPE   4 159
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TRIM58 MUTATED      0   15
  TRIM58 WILD-TYPE    4  159
     clus
vv    TRIM58 MUTATED TRIM58 WILD-TYPE
  NO               0                4
  YES             15              159
D9V11, continuous
D9V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TRIM58 MUTATED                                             9
  TRIM58 WILD-TYPE                                          85
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TRIM58 MUTATED                                        4              2
  TRIM58 WILD-TYPE                                     39             26
                  vv
clus               LIFELONG NON-SMOKER
  TRIM58 MUTATED                     0
  TRIM58 WILD-TYPE                   8
D9V13, multiclass
                                             clus
vv                                            TRIM58 MUTATED TRIM58 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              9               85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D9V14, continuous

Clustering(10) Variable = OR5L2 MUTATION ANALYSIS
D10V1, survival
                 sevent
clus2              0  1
  OR5L2 MUTATED    9  4
  OR5L2 WILD-TYPE 88 66
  OR5L2 MUTATED OR5L2 WILD-TYPE 
             13             154 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
              4              66 
$`OR5L2 MUTATED`
TCGA-18-3409 TCGA-18-3421 TCGA-21-5782 TCGA-22-4595 TCGA-22-4604 TCGA-33-4586 
       79.46        43.76        31.63        24.13        13.12        14.07 
TCGA-34-5234 TCGA-37-5819 TCGA-60-2723 TCGA-66-2758 TCGA-66-2794 TCGA-66-2800 
       32.68         3.39        22.78        20.98        54.08        49.05 
TCGA-85-6560 
        0.36 

$`OR5L2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       13.02        59.51        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 
       20.45        35.08        38.17        34.75        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       51.78         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        24.10         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99         0.99        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-85-6561 
       30.02        10.06         4.01         0.79 

  OR5L2 MUTATED OR5L2 WILD-TYPE 
           0.36            0.10 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
          79.46          173.79 
  OR5L2 MUTATED OR5L2 WILD-TYPE 
          24.13           16.09 
[1] "0.4 - 79.5 (24.1)"  "0.1 - 173.8 (16.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "OR5L2 MUTATED"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "OR5L2 MUTATED"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR5L2 MUTATED" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5L2 WILD-TYPE" "OR5L2 WILD-TYPE"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
  "OR5L2 MUTATED"   "OR5L2 MUTATED" "OR5L2 WILD-TYPE" 
[1] "hr=" "1.6"
D10V2, continuous
D10V3, binary
                 cls
clus                0   1
  OR5L2 MUTATED     3  10
  OR5L2 WILD-TYPE  44 121
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      3   10
  OR5L2 WILD-TYPE   44  121
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  FEMALE             3              44
  MALE              10             121
D10V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR5L2 MUTATED                                       1
  OR5L2 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR5L2 MUTATED                                        0
  OR5L2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5L2 MUTATED                                                            12
  OR5L2 WILD-TYPE                                                         160
D10V5, multiclass
                                                             clus
vv                                                            OR5L2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            OR5L2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
                 vv
clus               T1  T2  T3  T4
  OR5L2 MUTATED     2   8   1   2
  OR5L2 WILD-TYPE  34 108  13  10
D10V6, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  T1             2              34
  T2             8             108
  T3             1              13
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  OR5L2 MUTATED     7   2   4   0
  OR5L2 WILD-TYPE 110  37  13   5
D10V7, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  N0             7             110
  N1             2              37
  N2             4              13
  N3             0               5
                 vv
clus               M0  M1  MX
  OR5L2 MUTATED    12   0   0
  OR5L2 WILD-TYPE 153   3   6
D10V8, multiclass
    clus
vv   OR5L2 MUTATED OR5L2 WILD-TYPE
  M0            12             153
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR5L2 MUTATED    5  1      6
  OR5L2 WILD-TYPE 92 37     35
D10V9, multiclass
        clus
vv       OR5L2 MUTATED OR5L2 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             6              35
D10V10, binary
                 cls
clus                0   1
  OR5L2 MUTATED     1  12
  OR5L2 WILD-TYPE   3 162
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5L2 MUTATED      1   12
  OR5L2 WILD-TYPE    3  162
     clus
vv    OR5L2 MUTATED OR5L2 WILD-TYPE
  NO              1               3
  YES            12             162
D10V11, continuous
D10V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5L2 MUTATED                                             8
  OR5L2 WILD-TYPE                                          86
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5L2 MUTATED                                        3              2
  OR5L2 WILD-TYPE                                     40             26
                 vv
clus              LIFELONG NON-SMOKER
  OR5L2 MUTATED                     0
  OR5L2 WILD-TYPE                   8
D10V13, multiclass
                                             clus
vv                                            OR5L2 MUTATED OR5L2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D10V14, continuous

Clustering(11) Variable = FAM5C MUTATION ANALYSIS
D11V1, survival
                 sevent
clus2              0  1
  FAM5C MUTATED   13 13
  FAM5C WILD-TYPE 84 57
  FAM5C MUTATED FAM5C WILD-TYPE 
             26             141 
  FAM5C MUTATED FAM5C WILD-TYPE 
             13              57 
$`FAM5C MUTATED`
TCGA-18-3411 TCGA-18-3419 TCGA-18-5592 TCGA-21-1070 TCGA-21-5786 TCGA-21-5787 
       46.52         1.61         3.02       115.59        21.57        10.82 
TCGA-22-1002 TCGA-22-4613 TCGA-33-4532 TCGA-33-4538 TCGA-33-4566 TCGA-34-2596 
        4.31        11.77        82.98        97.94       173.79         2.63 
TCGA-34-5239 TCGA-34-5927 TCGA-37-3783 TCGA-39-5028 TCGA-39-5036 TCGA-39-5039 
       10.82        22.95         3.95         1.71        35.64        17.88 
TCGA-43-6771 TCGA-51-4079 TCGA-51-4080 TCGA-60-2708 TCGA-60-2726 TCGA-66-2754 
        5.42         0.39         0.39        68.45        11.77         2.01 
TCGA-66-2766 TCGA-66-2773 
        1.02         3.02 

$`FAM5C WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
        2.79        90.51        27.16        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-22-0944 TCGA-22-1011 
       15.55         9.30        31.63        29.85         7.33         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 TCGA-33-4582 
       62.86        56.32        16.60       114.05        43.10       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        14.07        19.76        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       51.78        32.68         9.04         7.73        14.07         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-2578 
       24.33         1.94        27.35        15.58         0.79        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        9.96         0.95         0.59         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        10.22        21.70        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       26.07        24.10        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         0.99         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  FAM5C MUTATED FAM5C WILD-TYPE 
           0.39            0.10 
  FAM5C MUTATED FAM5C WILD-TYPE 
         173.79          141.34 
  FAM5C MUTATED FAM5C WILD-TYPE 
          10.82           19.00 
[1] "0.4 - 173.8 (10.8)" "0.1 - 141.3 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "FAM5C MUTATED" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED"   "FAM5C MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" "FAM5C WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE"   "FAM5C MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5C WILD-TYPE" "FAM5C WILD-TYPE" "FAM5C WILD-TYPE" 
[1] "hr=" "1.2"
D11V2, continuous
D11V3, binary
                 cls
clus                0   1
  FAM5C MUTATED     6  21
  FAM5C WILD-TYPE  41 110
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      6   21
  FAM5C WILD-TYPE   41  110
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  FEMALE             6              41
  MALE              21             110
D11V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  FAM5C MUTATED                                       1
  FAM5C WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  FAM5C MUTATED                                        0
  FAM5C WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FAM5C MUTATED                                                            26
  FAM5C WILD-TYPE                                                         146
D11V5, multiclass
                                                             clus
vv                                                            FAM5C MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            26
                                                             clus
vv                                                            FAM5C WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             146
                 vv
clus              T1 T2 T3 T4
  FAM5C MUTATED    3 17  4  3
  FAM5C WILD-TYPE 33 99 10  9
D11V6, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  T1             3              33
  T2            17              99
  T3             4              10
  T4             3               9
                 vv
clus               N0  N1  N2  N3
  FAM5C MUTATED    14   7   6   0
  FAM5C WILD-TYPE 103  32  11   5
D11V7, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  N0            14             103
  N1             7              32
  N2             6              11
  N3             0               5
                 vv
clus               M0  M1  MX
  FAM5C MUTATED    24   0   1
  FAM5C WILD-TYPE 141   3   5
D11V8, multiclass
    clus
vv   FAM5C MUTATED FAM5C WILD-TYPE
  M0            24             141
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  FAM5C MUTATED   10  6     11
  FAM5C WILD-TYPE 87 32     30
D11V9, multiclass
        clus
vv       FAM5C MUTATED FAM5C WILD-TYPE
  I                 10              87
  II                 6              32
  III+IV            11              30
D11V10, binary
                 cls
clus                0   1
  FAM5C MUTATED     1  26
  FAM5C WILD-TYPE   3 148
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5C MUTATED      1   26
  FAM5C WILD-TYPE    3  148
     clus
vv    FAM5C MUTATED FAM5C WILD-TYPE
  NO              1               3
  YES            26             148
D11V11, continuous
D11V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FAM5C MUTATED                                            11
  FAM5C WILD-TYPE                                          83
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FAM5C MUTATED                                        7              5
  FAM5C WILD-TYPE                                     36             23
                 vv
clus              LIFELONG NON-SMOKER
  FAM5C MUTATED                     1
  FAM5C WILD-TYPE                   7
D11V13, multiclass
                                             clus
vv                                            FAM5C MUTATED FAM5C WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            11              83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  7              36
  CURRENT SMOKER                                          5              23
  LIFELONG NON-SMOKER                                     1               7
D11V14, continuous

Clustering(12) Variable = LRRC4C MUTATION ANALYSIS
D12V1, survival
                  sevent
clus2               0  1
  LRRC4C MUTATED    4 11
  LRRC4C WILD-TYPE 93 59
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              15              152 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
              11               59 
$`LRRC4C MUTATED`
TCGA-21-5782 TCGA-22-4591 TCGA-22-4613 TCGA-22-5473 TCGA-22-5491 TCGA-33-4566 
       31.63        20.45        11.77        63.52        56.32       173.79 
TCGA-34-5236 TCGA-34-5927 TCGA-37-4133 TCGA-43-6770 TCGA-43-6771 TCGA-51-4079 
        9.04        22.95         7.82         2.79         5.42         0.39 
TCGA-51-4080 TCGA-60-2698 TCGA-66-2785 
        0.39        10.22         1.94 

$`LRRC4C WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       13.12        19.30        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
        0.79        71.34        11.74        30.08        62.86        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       51.78        32.68        10.82         7.73        14.07         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         0.43         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 
        7.00         6.02         9.96         0.95         0.59         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  LRRC4C MUTATED LRRC4C WILD-TYPE 
            0.39             0.10 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
          173.79           141.34 
  LRRC4C MUTATED LRRC4C WILD-TYPE 
           10.22            18.46 
[1] "0.4 - 173.8 (10.2)" "0.1 - 141.3 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
  "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED"   "LRRC4C MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE"   "LRRC4C MUTATED" "LRRC4C WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" "LRRC4C WILD-TYPE" 
[1] "hr=" "1.9"
D12V2, continuous
D12V3, binary
                  cls
clus                 0   1
  LRRC4C MUTATED     5  12
  LRRC4C WILD-TYPE  42 119
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC4C MUTATED      5   12
  LRRC4C WILD-TYPE   42  119
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  FEMALE              5               42
  MALE               12              119
D12V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  LRRC4C MUTATED                                       1
  LRRC4C WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  LRRC4C MUTATED                                        0
  LRRC4C WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRRC4C MUTATED                                                            16
  LRRC4C WILD-TYPE                                                         156
D12V5, multiclass
                                                             clus
vv                                                            LRRC4C MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             16
                                                             clus
vv                                                            LRRC4C WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              156
                  vv
clus                T1  T2  T3  T4
  LRRC4C MUTATED     3   8   3   3
  LRRC4C WILD-TYPE  33 108  11   9
D12V6, multiclass
    clus
vv   LRRC4C MUTATED LRRC4C WILD-TYPE
  T1              3               33
  T2              8              108
  T3              3               11
  T4              3                9
                  vv
clus                N0  N1  N2  N3
  LRRC4C MUTATED    14   2   1   0
  LRRC4C WILD-TYPE 103  37  16   5
D12V7, multiclass
    clus
vv   LRRC4C MUTATED LRRC4C WILD-TYPE
  N0             14              103
  N1              2               37
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  LRRC4C MUTATED    13   0   2
  LRRC4C WILD-TYPE 152   3   4
D12V8, multiclass
    clus
vv   LRRC4C MUTATED LRRC4C WILD-TYPE
  M0             13              152
  M1              0                3
  MX              2                4
                  vv
clus                I II III+IV
  LRRC4C MUTATED   11  3      3
  LRRC4C WILD-TYPE 86 35     38
D12V9, multiclass
        clus
vv       LRRC4C MUTATED LRRC4C WILD-TYPE
  I                  11               86
  II                  3               35
  III+IV              3               38
D12V10, binary
                  cls
clus                 0   1
  LRRC4C MUTATED     0  17
  LRRC4C WILD-TYPE   4 157
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRC4C MUTATED      0   17
  LRRC4C WILD-TYPE    4  157
     clus
vv    LRRC4C MUTATED LRRC4C WILD-TYPE
  NO               0                4
  YES             17              157
D12V11, continuous
D12V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LRRC4C MUTATED                                             7
  LRRC4C WILD-TYPE                                          87
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LRRC4C MUTATED                                        4              4
  LRRC4C WILD-TYPE                                     39             24
                  vv
clus               LIFELONG NON-SMOKER
  LRRC4C MUTATED                     0
  LRRC4C WILD-TYPE                   8
D12V13, multiclass
                                             clus
vv                                            LRRC4C MUTATED LRRC4C WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      0                8
D12V14, continuous

Clustering(13) Variable = ZBBX MUTATION ANALYSIS
D13V1, survival
                sevent
clus2             0  1
  ZBBX MUTATED    9  8
  ZBBX WILD-TYPE 88 62
  ZBBX MUTATED ZBBX WILD-TYPE 
            17            150 
  ZBBX MUTATED ZBBX WILD-TYPE 
             8             62 
$`ZBBX MUTATED`
TCGA-18-5592 TCGA-21-1076 TCGA-21-5784 TCGA-22-1012 TCGA-22-4613 TCGA-22-5473 
        3.02        60.89        29.85        14.10        11.77        63.52 
TCGA-22-5492 TCGA-33-4586 TCGA-34-5231 TCGA-34-5236 TCGA-37-4141 TCGA-43-6143 
       16.60        14.07        50.24         9.04         0.39         7.00 
TCGA-60-2715 TCGA-60-2719 TCGA-66-2757 TCGA-66-2773 TCGA-66-2787 
       35.34        30.61         0.99         3.02        40.01 

$`ZBBX WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 
       46.88        34.78        15.55         9.30        31.63        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 
       10.82         7.33         4.31         1.74        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       31.69        64.90        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 
       11.74        30.08        62.86        56.32        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 
       97.94        43.10       173.79       103.53       141.34        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
        2.63        61.61        32.84        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         6.81         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         8.48         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       47.87         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  ZBBX MUTATED ZBBX WILD-TYPE 
          0.39           0.10 
  ZBBX MUTATED ZBBX WILD-TYPE 
         63.52         173.79 
  ZBBX MUTATED ZBBX WILD-TYPE 
         14.10          18.46 
[1] "0.4 - 63.5 (14.1)"  "0.1 - 173.8 (18.5)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZBBX WILD-TYPE"   "ZBBX MUTATED"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZBBX WILD-TYPE"   "ZBBX MUTATED"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZBBX WILD-TYPE"   "ZBBX MUTATED"   "ZBBX MUTATED" "ZBBX WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZBBX WILD-TYPE"   "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE"   "ZBBX MUTATED" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZBBX MUTATED" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZBBX WILD-TYPE" "ZBBX WILD-TYPE" "ZBBX WILD-TYPE" 
[1] "hr=" "1.3"
D13V2, continuous
D13V3, binary
                cls
clus               0   1
  ZBBX MUTATED     8   9
  ZBBX WILD-TYPE  39 122
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      8    9
  ZBBX WILD-TYPE   39  122
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  FEMALE            8             39
  MALE              9            122
D13V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZBBX MUTATED                                       1
  ZBBX WILD-TYPE                                     4
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ZBBX MUTATED                                        0
  ZBBX WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZBBX MUTATED                                                            16
  ZBBX WILD-TYPE                                                         156
D13V5, multiclass
                                                             clus
vv                                                            ZBBX MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           16
                                                             clus
vv                                                            ZBBX WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            156
                vv
clus              T1  T2  T3  T4
  ZBBX MUTATED     7   7   3   0
  ZBBX WILD-TYPE  29 109  11  12
D13V6, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  T1            7             29
  T2            7            109
  T3            3             11
  T4            0             12
                vv
clus              N0  N1  N2  N3
  ZBBX MUTATED    15   0   2   0
  ZBBX WILD-TYPE 102  39  15   5
D13V7, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  N0           15            102
  N1            0             39
  N2            2             15
  N3            0              5
                vv
clus              M0  M1  MX
  ZBBX MUTATED    17   0   0
  ZBBX WILD-TYPE 148   3   6
D13V8, multiclass
    clus
vv   ZBBX MUTATED ZBBX WILD-TYPE
  M0           17            148
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  ZBBX MUTATED   13  2      2
  ZBBX WILD-TYPE 84 36     39
D13V9, multiclass
        clus
vv       ZBBX MUTATED ZBBX WILD-TYPE
  I                13             84
  II                2             36
  III+IV            2             39
D13V10, binary
                cls
clus               0   1
  ZBBX MUTATED     0  17
  ZBBX WILD-TYPE   4 157
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZBBX MUTATED      0   17
  ZBBX WILD-TYPE    4  157
     clus
vv    ZBBX MUTATED ZBBX WILD-TYPE
  NO             0              4
  YES           17            157
D13V11, continuous
D13V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZBBX MUTATED                                             8
  ZBBX WILD-TYPE                                          86
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZBBX MUTATED                                        5              1
  ZBBX WILD-TYPE                                     38             27
                vv
clus             LIFELONG NON-SMOKER
  ZBBX MUTATED                     2
  ZBBX WILD-TYPE                   6
D13V13, multiclass
                                             clus
vv                                            ZBBX MUTATED ZBBX WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            8             86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5             38
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    2              6
D13V14, continuous

Clustering(14) Variable = DPPA4 MUTATION ANALYSIS
D14V1, survival
                 sevent
clus2              0  1
  DPPA4 MUTATED    6  4
  DPPA4 WILD-TYPE 91 66
  DPPA4 MUTATED DPPA4 WILD-TYPE 
             10             157 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
              4              66 
$`DPPA4 MUTATED`
TCGA-18-3419 TCGA-22-5472 TCGA-22-5478 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 
        1.61        64.90         0.79        32.84        50.24        32.68 
TCGA-39-5027 TCGA-43-6143 TCGA-60-2698 TCGA-85-6561 
       60.76         7.00        10.22         0.79 

$`DPPA4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 
       34.75        13.12        19.30        11.77        31.69        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-5232 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       61.61        51.78         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         2.04         1.02        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 
        0.36 

  DPPA4 MUTATED DPPA4 WILD-TYPE 
           0.79            0.10 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
          64.90          173.79 
  DPPA4 MUTATED DPPA4 WILD-TYPE 
          21.45           17.88 
[1] "0.8 - 64.9 (21.4)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "DPPA4 MUTATED"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "DPPA4 MUTATED"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "DPPA4 MUTATED"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"DPPA4 WILD-TYPE"   "DPPA4 MUTATED" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"DPPA4 WILD-TYPE" "DPPA4 WILD-TYPE"   "DPPA4 MUTATED" 
[1] "hr=" "1"  
D14V2, continuous
D14V3, binary
                 cls
clus                0   1
  DPPA4 MUTATED     1  11
  DPPA4 WILD-TYPE  46 120
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPPA4 MUTATED      1   11
  DPPA4 WILD-TYPE   46  120
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  FEMALE             1              46
  MALE              11             120
D14V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  DPPA4 MUTATED                                       1
  DPPA4 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  DPPA4 MUTATED                                        0
  DPPA4 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  DPPA4 MUTATED                                                            11
  DPPA4 WILD-TYPE                                                         161
D14V5, multiclass
                                                             clus
vv                                                            DPPA4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            DPPA4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
                 vv
clus               T1  T2  T3  T4
  DPPA4 MUTATED     3   8   0   1
  DPPA4 WILD-TYPE  33 108  14  11
D14V6, multiclass
    clus
vv   DPPA4 MUTATED DPPA4 WILD-TYPE
  T1             3              33
  T2             8             108
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  DPPA4 MUTATED    10   2   0   0
  DPPA4 WILD-TYPE 107  37  17   5
D14V7, multiclass
    clus
vv   DPPA4 MUTATED DPPA4 WILD-TYPE
  N0            10             107
  N1             2              37
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  DPPA4 MUTATED    12   0   0
  DPPA4 WILD-TYPE 153   3   6
D14V8, multiclass
    clus
vv   DPPA4 MUTATED DPPA4 WILD-TYPE
  M0            12             153
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  DPPA4 MUTATED    8  4      0
  DPPA4 WILD-TYPE 89 34     41
D14V9, multiclass
        clus
vv       DPPA4 MUTATED DPPA4 WILD-TYPE
  I                  8              89
  II                 4              34
  III+IV             0              41
D14V10, binary
                 cls
clus                0   1
  DPPA4 MUTATED     0  12
  DPPA4 WILD-TYPE   4 162
[1] "tbl2"
                 cls
clus              [,1] [,2]
  DPPA4 MUTATED      0   12
  DPPA4 WILD-TYPE    4  162
     clus
vv    DPPA4 MUTATED DPPA4 WILD-TYPE
  NO              0               4
  YES            12             162
D14V11, continuous
D14V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  DPPA4 MUTATED                                             8
  DPPA4 WILD-TYPE                                          86
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  DPPA4 MUTATED                                        3              0
  DPPA4 WILD-TYPE                                     40             28
                 vv
clus              LIFELONG NON-SMOKER
  DPPA4 MUTATED                     1
  DPPA4 WILD-TYPE                   7
D14V13, multiclass
                                             clus
vv                                            DPPA4 MUTATED DPPA4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D14V14, continuous

Clustering(15) Variable = ASB5 MUTATION ANALYSIS
D15V1, survival
                sevent
clus2             0  1
  ASB5 MUTATED    6  3
  ASB5 WILD-TYPE 91 67
  ASB5 MUTATED ASB5 WILD-TYPE 
             9            158 
  ASB5 MUTATED ASB5 WILD-TYPE 
             3             67 
$`ASB5 MUTATED`
TCGA-18-3409 TCGA-18-3412 TCGA-22-4613 TCGA-33-4533 TCGA-33-4538 TCGA-39-5016 
       79.46        11.34        11.77       114.05        97.94        74.07 
TCGA-66-2755 TCGA-66-2766 TCGA-66-2768 
        0.92         1.02         2.01 

$`ASB5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       56.32        16.60        82.98        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 
        7.82         6.81         0.39         3.39        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 
       25.02         0.99         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  ASB5 MUTATED ASB5 WILD-TYPE 
          0.92           0.10 
  ASB5 MUTATED ASB5 WILD-TYPE 
        114.05         173.79 
  ASB5 MUTATED ASB5 WILD-TYPE 
         11.77          17.98 
[1] "0.9 - 114.0 (11.8)" "0.1 - 173.8 (18.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED"   "ASB5 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED"   "ASB5 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED"   "ASB5 MUTATED" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE"   "ASB5 MUTATED" "ASB5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "ASB5 MUTATED" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
[1] "hr=" "2.1"
D15V2, continuous
D15V3, binary
                cls
clus               0   1
  ASB5 MUTATED     2   7
  ASB5 WILD-TYPE  45 124
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      2    7
  ASB5 WILD-TYPE   45  124
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  FEMALE            2             45
  MALE              7            124
D15V4, continuous
[1] "Remove cluster labels:" "ASB5 MUTATED"          
clus
  ASB5 MUTATED ASB5 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"ASB5 WILD-TYPE" "ASB5 WILD-TYPE" "ASB5 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ASB5 MUTATED                                       2
  ASB5 WILD-TYPE                                     3
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ASB5 MUTATED                                        0
  ASB5 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ASB5 MUTATED                                                             7
  ASB5 WILD-TYPE                                                         165
D15V5, multiclass
                                                             clus
vv                                                            ASB5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            ASB5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
                vv
clus              T1  T2  T3  T4
  ASB5 MUTATED     2   7   0   0
  ASB5 WILD-TYPE  34 109  14  12
D15V6, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  T1            2             34
  T2            7            109
  T3            0             14
  T4            0             12
                vv
clus              N0  N1  N2  N3
  ASB5 MUTATED     5   2   2   0
  ASB5 WILD-TYPE 112  37  15   5
D15V7, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  N0            5            112
  N1            2             37
  N2            2             15
  N3            0              5
                vv
clus              M0  M1  MX
  ASB5 MUTATED     9   0   0
  ASB5 WILD-TYPE 156   3   6
D15V8, multiclass
    clus
vv   ASB5 MUTATED ASB5 WILD-TYPE
  M0            9            156
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  ASB5 MUTATED    4  2      2
  ASB5 WILD-TYPE 93 36     39
D15V9, multiclass
        clus
vv       ASB5 MUTATED ASB5 WILD-TYPE
  I                 4             93
  II                2             36
  III+IV            2             39
D15V10, binary
                cls
clus               0   1
  ASB5 MUTATED     0   9
  ASB5 WILD-TYPE   4 165
[1] "tbl2"
                cls
clus             [,1] [,2]
  ASB5 MUTATED      0    9
  ASB5 WILD-TYPE    4  165
     clus
vv    ASB5 MUTATED ASB5 WILD-TYPE
  NO             0              4
  YES            9            165
D15V11, continuous
D15V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ASB5 MUTATED                                             3
  ASB5 WILD-TYPE                                          91
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ASB5 MUTATED                                        4              1
  ASB5 WILD-TYPE                                     39             27
                vv
clus             LIFELONG NON-SMOKER
  ASB5 MUTATED                     1
  ASB5 WILD-TYPE                   7
D15V13, multiclass
                                             clus
vv                                            ASB5 MUTATED ASB5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4             39
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    1              7
D15V14, continuous

Clustering(16) Variable = PDYN MUTATION ANALYSIS
D16V1, survival
                sevent
clus2             0  1
  PDYN MUTATED    6  3
  PDYN WILD-TYPE 91 67
  PDYN MUTATED PDYN WILD-TYPE 
             9            158 
  PDYN MUTATED PDYN WILD-TYPE 
             3             67 
$`PDYN MUTATED`
TCGA-21-1070 TCGA-21-5787 TCGA-22-5477 TCGA-34-5239 TCGA-34-5928 TCGA-56-6546 
      115.59        10.82        44.22        10.82         5.52         1.02 
TCGA-60-2724 TCGA-66-2788 TCGA-66-2793 
        1.22        22.98        10.06 

$`PDYN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
        7.73        14.07        22.95         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2698 
        0.39         2.07        28.93         0.10         2.04        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       22.78        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        4.04         5.03        30.02        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  PDYN MUTATED PDYN WILD-TYPE 
          1.02           0.10 
  PDYN MUTATED PDYN WILD-TYPE 
        115.59         173.79 
  PDYN MUTATED PDYN WILD-TYPE 
         10.82          18.46 
[1] "1.0 - 115.6 (10.8)" "0.1 - 173.8 (18.5)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE"   "PDYN MUTATED" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PDYN WILD-TYPE"   "PDYN MUTATED" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
                cls
clus               0   1
  PDYN MUTATED     2   8
  PDYN WILD-TYPE  45 123
[1] "tbl2"
                cls
clus             [,1] [,2]
  PDYN MUTATED      2    8
  PDYN WILD-TYPE   45  123
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  FEMALE            2             45
  MALE              8            123
D16V4, continuous
[1] "Remove cluster labels:" "PDYN MUTATED"          
clus
  PDYN MUTATED PDYN WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-22-4591     TCGA-22-4593 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4595     TCGA-22-4599     TCGA-22-4601     TCGA-22-4604 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5485 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-22-5489     TCGA-22-5491     TCGA-22-5492     TCGA-34-5234 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" "PDYN WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"PDYN WILD-TYPE" "PDYN WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PDYN MUTATED                                       0
  PDYN WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PDYN MUTATED                                        0
  PDYN WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PDYN MUTATED                                                            10
  PDYN WILD-TYPE                                                         162
D16V5, multiclass
                                                             clus
vv                                                            PDYN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           10
                                                             clus
vv                                                            PDYN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            162
                vv
clus              T1  T2  T3  T4
  PDYN MUTATED     1   4   2   3
  PDYN WILD-TYPE  35 112  12   9
D16V6, multiclass
    clus
vv   PDYN MUTATED PDYN WILD-TYPE
  T1            1             35
  T2            4            112
  T3            2             12
  T4            3              9
                vv
clus              N0  N1  N2  N3
  PDYN MUTATED     6   3   1   0
  PDYN WILD-TYPE 111  36  16   5
D16V7, multiclass
    clus
vv   PDYN MUTATED PDYN WILD-TYPE
  N0            6            111
  N1            3             36
  N2            1             16
  N3            0              5
                vv
clus              M0  M1  MX
  PDYN MUTATED     9   0   1
  PDYN WILD-TYPE 156   3   5
D16V8, multiclass
    clus
vv   PDYN MUTATED PDYN WILD-TYPE
  M0            9            156
  M1            0              3
  MX            1              5
                vv
clus              I II III+IV
  PDYN MUTATED    2  2      5
  PDYN WILD-TYPE 95 36     36
D16V9, multiclass
        clus
vv       PDYN MUTATED PDYN WILD-TYPE
  I                 2             95
  II                2             36
  III+IV            5             36
D16V10, binary
                cls
clus               0   1
  PDYN MUTATED     1   9
  PDYN WILD-TYPE   3 165
[1] "tbl2"
                cls
clus             [,1] [,2]
  PDYN MUTATED      1    9
  PDYN WILD-TYPE    3  165
     clus
vv    PDYN MUTATED PDYN WILD-TYPE
  NO             1              3
  YES            9            165
D16V11, continuous
D16V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PDYN MUTATED                                             7
  PDYN WILD-TYPE                                          87
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PDYN MUTATED                                        1              1
  PDYN WILD-TYPE                                     42             27
                vv
clus             LIFELONG NON-SMOKER
  PDYN MUTATED                     0
  PDYN WILD-TYPE                   8
D16V13, multiclass
                                             clus
vv                                            PDYN MUTATED PDYN WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            7             87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             42
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D16V14, continuous

Clustering(17) Variable = REG1B MUTATION ANALYSIS
D17V1, survival
                 sevent
clus2              0  1
  REG1B MUTATED    6  4
  REG1B WILD-TYPE 91 66
  REG1B MUTATED REG1B WILD-TYPE 
             10             157 
  REG1B MUTATED REG1B WILD-TYPE 
              4              66 
$`REG1B MUTATED`
TCGA-18-3409 TCGA-18-4083 TCGA-22-5473 TCGA-34-2600 TCGA-34-5232 TCGA-34-5928 
       79.46         6.15        63.52        61.61        51.78         5.52 
TCGA-39-5037 TCGA-66-2781 TCGA-66-2789 TCGA-85-6560 
        0.79         3.98         4.04         0.36 

$`REG1B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       32.84        50.24        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       27.35        15.58        35.64        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6561 
        0.79 

  REG1B MUTATED REG1B WILD-TYPE 
           0.36            0.10 
  REG1B MUTATED REG1B WILD-TYPE 
          79.46          173.79 
  REG1B MUTATED REG1B WILD-TYPE 
          5.835          18.080 
[1] "0.4 - 79.5 (5.8)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1B WILD-TYPE" "REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1B WILD-TYPE"   "REG1B MUTATED" "REG1B WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
D17V3, binary
                 cls
clus                0   1
  REG1B MUTATED     3   8
  REG1B WILD-TYPE  44 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      3    8
  REG1B WILD-TYPE   44  123
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  FEMALE             3              44
  MALE               8             123
D17V4, continuous
[1] "Remove cluster labels:" "REG1B MUTATED"         
clus
  REG1B MUTATED REG1B WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"REG1B WILD-TYPE" "REG1B WILD-TYPE" "REG1B WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  REG1B MUTATED                                       1
  REG1B WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  REG1B MUTATED                                        0
  REG1B WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG1B MUTATED                                                            10
  REG1B WILD-TYPE                                                         162
D17V5, multiclass
                                                             clus
vv                                                            REG1B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            REG1B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
                 vv
clus               T1  T2  T3  T4
  REG1B MUTATED     5   5   1   0
  REG1B WILD-TYPE  31 111  13  12
D17V6, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  T1             5              31
  T2             5             111
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  REG1B MUTATED     5   5   0   1
  REG1B WILD-TYPE 112  34  17   4
D17V7, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  N0             5             112
  N1             5              34
  N2             0              17
  N3             1               4
                 vv
clus               M0  M1  MX
  REG1B MUTATED    11   0   0
  REG1B WILD-TYPE 154   3   6
D17V8, multiclass
    clus
vv   REG1B MUTATED REG1B WILD-TYPE
  M0            11             154
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  REG1B MUTATED    3  5      2
  REG1B WILD-TYPE 94 33     39
D17V9, multiclass
        clus
vv       REG1B MUTATED REG1B WILD-TYPE
  I                  3              94
  II                 5              33
  III+IV             2              39
D17V10, binary
                 cls
clus                0   1
  REG1B MUTATED     0  11
  REG1B WILD-TYPE   4 163
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1B MUTATED      0   11
  REG1B WILD-TYPE    4  163
     clus
vv    REG1B MUTATED REG1B WILD-TYPE
  NO              0               4
  YES            11             163
D17V11, continuous
D17V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  REG1B MUTATED                                             5
  REG1B WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  REG1B MUTATED                                        3              2
  REG1B WILD-TYPE                                     40             26
                 vv
clus              LIFELONG NON-SMOKER
  REG1B MUTATED                     0
  REG1B WILD-TYPE                   8
D17V13, multiclass
                                             clus
vv                                            REG1B MUTATED REG1B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D17V14, continuous

Clustering(18) Variable = CYP11B1 MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                0  1
  CYP11B1 MUTATED    4 11
  CYP11B1 WILD-TYPE 93 59
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               15               152 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
               11                59 
$`CYP11B1 MUTATED`
TCGA-21-1077 TCGA-21-5787 TCGA-22-1016 TCGA-22-4595 TCGA-22-5491 TCGA-33-4566 
       34.78        10.82        27.02        24.13        56.32       173.79 
TCGA-43-6771 TCGA-51-4079 TCGA-51-4080 TCGA-60-2719 TCGA-60-2726 TCGA-66-2766 
        5.42         0.39         0.39        30.61        11.77         1.02 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2789 
       24.95         1.94         4.04 

$`CYP11B1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
      115.59        46.88        60.89        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
        0.79        71.34        11.74        30.08        62.86        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       82.98       114.05        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        9.96         0.95         0.59         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 
       55.40        29.19         9.01        47.87        35.34         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
       26.07        24.10        22.78         1.22        23.64        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.99        20.98        25.02         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.03         3.98        12.00        25.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
             0.39              0.10 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
           173.79            141.34 
  CYP11B1 MUTATED CYP11B1 WILD-TYPE 
            11.77             17.98 
[1] "0.4 - 173.8 (11.8)" "0.1 - 141.3 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE"   "CYP11B1 MUTATED" "CYP11B1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" "CYP11B1 WILD-TYPE" 
[1] "hr=" "2"  
D18V2, continuous
D18V3, binary
                   cls
clus                  0   1
  CYP11B1 MUTATED     2  13
  CYP11B1 WILD-TYPE  45 118
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11B1 MUTATED      2   13
  CYP11B1 WILD-TYPE   45  118
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  FEMALE               2                45
  MALE                13               118
D18V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CYP11B1 MUTATED                                       1
  CYP11B1 WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CYP11B1 MUTATED                                        0
  CYP11B1 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CYP11B1 MUTATED                                                            14
  CYP11B1 WILD-TYPE                                                         158
D18V5, multiclass
                                                             clus
vv                                                            CYP11B1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              14
                                                             clus
vv                                                            CYP11B1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               158
                   vv
clus                 T1  T2  T3  T4
  CYP11B1 MUTATED     3  10   1   1
  CYP11B1 WILD-TYPE  33 106  13  11
D18V6, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  T1               3                33
  T2              10               106
  T3               1                13
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  CYP11B1 MUTATED     7   3   3   2
  CYP11B1 WILD-TYPE 110  36  14   3
D18V7, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  N0               7               110
  N1               3                36
  N2               3                14
  N3               2                 3
                   vv
clus                 M0  M1  MX
  CYP11B1 MUTATED    11   0   1
  CYP11B1 WILD-TYPE 154   3   5
D18V8, multiclass
    clus
vv   CYP11B1 MUTATED CYP11B1 WILD-TYPE
  M0              11               154
  M1               0                 3
  MX               1                 5
                   vv
clus                 I II III+IV
  CYP11B1 MUTATED    7  2      6
  CYP11B1 WILD-TYPE 90 36     35
D18V9, multiclass
        clus
vv       CYP11B1 MUTATED CYP11B1 WILD-TYPE
  I                    7                90
  II                   2                36
  III+IV               6                35
D18V10, binary
                   cls
clus                  0   1
  CYP11B1 MUTATED     2  13
  CYP11B1 WILD-TYPE   2 161
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CYP11B1 MUTATED      2   13
  CYP11B1 WILD-TYPE    2  161
     clus
vv    CYP11B1 MUTATED CYP11B1 WILD-TYPE
  NO                2                 2
  YES              13               161
D18V11, continuous
D18V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CYP11B1 MUTATED                                             9
  CYP11B1 WILD-TYPE                                          85
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CYP11B1 MUTATED                                        3              3
  CYP11B1 WILD-TYPE                                     40             25
                   vv
clus                LIFELONG NON-SMOKER
  CYP11B1 MUTATED                     0
  CYP11B1 WILD-TYPE                   8
D18V13, multiclass
                                             clus
vv                                            CYP11B1 MUTATED CYP11B1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               9                85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    3                40
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       0                 8
D18V14, continuous

Clustering(19) Variable = CRB1 MUTATION ANALYSIS
D19V1, survival
                sevent
clus2             0  1
  CRB1 MUTATED   12 10
  CRB1 WILD-TYPE 85 60
  CRB1 MUTATED CRB1 WILD-TYPE 
            22            145 
  CRB1 MUTATED CRB1 WILD-TYPE 
            10             60 
$`CRB1 MUTATED`
TCGA-18-3409 TCGA-18-5592 TCGA-21-1071 TCGA-21-5784 TCGA-22-1002 TCGA-22-4599 
       79.46         3.02        46.88        29.85         4.31        38.17 
TCGA-22-4613 TCGA-22-5480 TCGA-22-5485 TCGA-33-4566 TCGA-33-4586 TCGA-34-5927 
       11.77        71.34        30.08       173.79        14.07        22.95 
TCGA-37-5819 TCGA-39-5031 TCGA-43-6770 TCGA-60-2698 TCGA-60-2710 TCGA-66-2756 
        3.39        27.35         2.79        10.22        55.40         0.99 
TCGA-66-2763 TCGA-66-2788 TCGA-66-2791 TCGA-66-2800 
        0.99        22.98         5.03        49.05 

$`CRB1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 
        6.15         2.79        90.51        27.16       115.59        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 
       34.78        15.55         9.30        31.63        21.57        10.82 
TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
        7.33         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       24.13        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5489 
       63.52        14.60        44.22         0.79        11.74        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 
       70.03        60.76         1.71        24.33         1.94        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         6.02         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 
        2.04         1.02        21.70        68.45        49.48        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-85-6560 
        4.04        30.02        10.06        54.08         4.01         0.36 
TCGA-85-6561 
        0.79 

  CRB1 MUTATED CRB1 WILD-TYPE 
          0.99           0.10 
  CRB1 MUTATED CRB1 WILD-TYPE 
        173.79         141.34 
  CRB1 MUTATED CRB1 WILD-TYPE 
        22.965         16.960 
[1] "1.0 - 173.8 (23.0)" "0.1 - 141.3 (17.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CRB1 WILD-TYPE"   "CRB1 MUTATED" "CRB1 WILD-TYPE"   "CRB1 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
  "CRB1 MUTATED" "CRB1 WILD-TYPE" "CRB1 WILD-TYPE" 
[1] "hr=" "1.2"
D19V2, continuous
D19V3, binary
                cls
clus               0   1
  CRB1 MUTATED    10  13
  CRB1 WILD-TYPE  37 118
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRB1 MUTATED     10   13
  CRB1 WILD-TYPE   37  118
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  FEMALE           10             37
  MALE             13            118
D19V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CRB1 MUTATED                                       1
  CRB1 WILD-TYPE                                     4
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CRB1 MUTATED                                        0
  CRB1 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CRB1 MUTATED                                                            22
  CRB1 WILD-TYPE                                                         150
D19V5, multiclass
                                                             clus
vv                                                            CRB1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           22
                                                             clus
vv                                                            CRB1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            150
                vv
clus              T1  T2  T3  T4
  CRB1 MUTATED     8  12   1   2
  CRB1 WILD-TYPE  28 104  13  10
D19V6, multiclass
    clus
vv   CRB1 MUTATED CRB1 WILD-TYPE
  T1            8             28
  T2           12            104
  T3            1             13
  T4            2             10
                vv
clus             N0 N1 N2 N3
  CRB1 MUTATED   18  2  2  1
  CRB1 WILD-TYPE 99 37 15  4
D19V7, multiclass
    clus
vv   CRB1 MUTATED CRB1 WILD-TYPE
  N0           18             99
  N1            2             37
  N2            2             15
  N3            1              4
                vv
clus              M0  M1  MX
  CRB1 MUTATED    22   0   1
  CRB1 WILD-TYPE 143   3   5
D19V8, multiclass
    clus
vv   CRB1 MUTATED CRB1 WILD-TYPE
  M0           22            143
  M1            0              3
  MX            1              5
                vv
clus              I II III+IV
  CRB1 MUTATED   13  4      5
  CRB1 WILD-TYPE 84 34     36
D19V9, multiclass
        clus
vv       CRB1 MUTATED CRB1 WILD-TYPE
  I                13             84
  II                4             34
  III+IV            5             36
D19V10, binary
                cls
clus               0   1
  CRB1 MUTATED     0  23
  CRB1 WILD-TYPE   4 151
[1] "tbl2"
                cls
clus             [,1] [,2]
  CRB1 MUTATED      0   23
  CRB1 WILD-TYPE    4  151
     clus
vv    CRB1 MUTATED CRB1 WILD-TYPE
  NO             0              4
  YES           23            151
D19V11, continuous
D19V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CRB1 MUTATED                                            12
  CRB1 WILD-TYPE                                          82
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CRB1 MUTATED                                        4              6
  CRB1 WILD-TYPE                                     39             22
                vv
clus             LIFELONG NON-SMOKER
  CRB1 MUTATED                     0
  CRB1 WILD-TYPE                   8
D19V13, multiclass
                                             clus
vv                                            CRB1 MUTATED CRB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           12             82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4             39
  CURRENT SMOKER                                         6             22
  LIFELONG NON-SMOKER                                    0              8
D19V14, continuous

Clustering(20) Variable = OR6F1 MUTATION ANALYSIS
D20V1, survival
                 sevent
clus2              0  1
  OR6F1 MUTATED    5  6
  OR6F1 WILD-TYPE 92 64
  OR6F1 MUTATED OR6F1 WILD-TYPE 
             11             156 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
              6              64 
$`OR6F1 MUTATED`
TCGA-18-5592 TCGA-21-5782 TCGA-33-4586 TCGA-34-5232 TCGA-37-4141 TCGA-56-1622 
        3.02        31.63        14.07        51.78         0.39        28.93 
TCGA-60-2698 TCGA-66-2727 TCGA-66-2785 TCGA-66-2789 TCGA-85-6561 
       10.22        16.96         1.94         4.04         0.79 

$`OR6F1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53       141.34        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        50.24        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        0.43         7.82         6.81         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        0.39         2.07         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
        1.22        23.64        11.77        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 
       12.00        24.95        25.97        40.01        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 

  OR6F1 MUTATED OR6F1 WILD-TYPE 
           0.39            0.10 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
          51.78          173.79 
  OR6F1 MUTATED OR6F1 WILD-TYPE 
          10.22           18.92 
[1] "0.4 - 51.8 (10.2)"  "0.1 - 173.8 (18.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" "OR6F1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE"   "OR6F1 MUTATED" 
[1] "hr=" "2.3"
D20V2, continuous
D20V3, binary
                 cls
clus                0   1
  OR6F1 MUTATED     4   9
  OR6F1 WILD-TYPE  43 122
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6F1 MUTATED      4    9
  OR6F1 WILD-TYPE   43  122
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  FEMALE             4              43
  MALE               9             122
D20V4, continuous
[1] "Remove cluster labels:" "OR6F1 MUTATED"         
clus
  OR6F1 MUTATED OR6F1 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR6F1 WILD-TYPE" "OR6F1 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR6F1 MUTATED                                       0
  OR6F1 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR6F1 MUTATED                                        0
  OR6F1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR6F1 MUTATED                                                            13
  OR6F1 WILD-TYPE                                                         159
D20V5, multiclass
                                                             clus
vv                                                            OR6F1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            OR6F1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
                 vv
clus               T1  T2  T3  T4
  OR6F1 MUTATED     4   7   1   1
  OR6F1 WILD-TYPE  32 109  13  11
D20V6, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  T1             4              32
  T2             7             109
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR6F1 MUTATED     9   2   1   1
  OR6F1 WILD-TYPE 108  37  16   4
D20V7, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  N0             9             108
  N1             2              37
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  OR6F1 MUTATED    13   0   0
  OR6F1 WILD-TYPE 152   3   6
D20V8, multiclass
    clus
vv   OR6F1 MUTATED OR6F1 WILD-TYPE
  M0            13             152
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR6F1 MUTATED    6  5      2
  OR6F1 WILD-TYPE 91 33     39
D20V9, multiclass
        clus
vv       OR6F1 MUTATED OR6F1 WILD-TYPE
  I                  6              91
  II                 5              33
  III+IV             2              39
D20V10, binary
                 cls
clus                0   1
  OR6F1 MUTATED     0  13
  OR6F1 WILD-TYPE   4 161
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6F1 MUTATED      0   13
  OR6F1 WILD-TYPE    4  161
     clus
vv    OR6F1 MUTATED OR6F1 WILD-TYPE
  NO              0               4
  YES            13             161
D20V11, continuous
D20V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR6F1 MUTATED                                             9
  OR6F1 WILD-TYPE                                          85
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR6F1 MUTATED                                        2              0
  OR6F1 WILD-TYPE                                     41             28
                 vv
clus              LIFELONG NON-SMOKER
  OR6F1 MUTATED                     1
  OR6F1 WILD-TYPE                   7
D20V13, multiclass
                                             clus
vv                                            OR6F1 MUTATED OR6F1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D20V14, continuous

Clustering(21) Variable = ESRRG MUTATION ANALYSIS
D21V1, survival
                 sevent
clus2              0  1
  ESRRG MUTATED    8  4
  ESRRG WILD-TYPE 89 66
  ESRRG MUTATED ESRRG WILD-TYPE 
             12             155 
  ESRRG MUTATED ESRRG WILD-TYPE 
              4              66 
$`ESRRG MUTATED`
TCGA-21-5786 TCGA-22-5473 TCGA-33-4566 TCGA-37-3789 TCGA-37-4133 TCGA-39-5029 
       21.57        63.52       173.79         0.43         7.82        24.33 
TCGA-43-5668 TCGA-60-2709 TCGA-66-2755 TCGA-66-2771 TCGA-66-2781 TCGA-66-2782 
        8.48        49.48         0.92        19.00         3.98        12.00 

$`ESRRG WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        3.95         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       68.45        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 
        2.01         1.02         2.01         2.01        23.01         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
        2.01        19.00        12.03        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  ESRRG MUTATED ESRRG WILD-TYPE 
           0.43            0.10 
  ESRRG MUTATED ESRRG WILD-TYPE 
         173.79          141.34 
  ESRRG MUTATED ESRRG WILD-TYPE 
          15.50           17.88 
[1] "0.4 - 173.8 (15.5)" "0.1 - 141.3 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ESRRG MUTATED"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ESRRG MUTATED"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ESRRG MUTATED"   "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" "ESRRG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE"   "ESRRG MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ESRRG MUTATED" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
[1] "hr=" "1.8"
D21V2, continuous
D21V3, binary
                 cls
clus                0   1
  ESRRG MUTATED     0  12
  ESRRG WILD-TYPE  47 119
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESRRG MUTATED      0   12
  ESRRG WILD-TYPE   47  119
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  FEMALE             0              47
  MALE              12             119
D21V4, continuous
[1] "Remove cluster labels:" "ESRRG MUTATED"         
clus
  ESRRG MUTATED ESRRG WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"ESRRG WILD-TYPE" "ESRRG WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ESRRG MUTATED                                       0
  ESRRG WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ESRRG MUTATED                                        0
  ESRRG WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ESRRG MUTATED                                                            12
  ESRRG WILD-TYPE                                                         160
D21V5, multiclass
                                                             clus
vv                                                            ESRRG MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            ESRRG WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
                 vv
clus               T1  T2  T3  T4
  ESRRG MUTATED     2   7   2   1
  ESRRG WILD-TYPE  34 109  12  11
D21V6, multiclass
    clus
vv   ESRRG MUTATED ESRRG WILD-TYPE
  T1             2              34
  T2             7             109
  T3             2              12
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  ESRRG MUTATED     9   2   1   0
  ESRRG WILD-TYPE 108  37  16   5
D21V7, multiclass
    clus
vv   ESRRG MUTATED ESRRG WILD-TYPE
  N0             9             108
  N1             2              37
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  ESRRG MUTATED    10   0   1
  ESRRG WILD-TYPE 155   3   5
D21V8, multiclass
    clus
vv   ESRRG MUTATED ESRRG WILD-TYPE
  M0            10             155
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  ESRRG MUTATED    7  3      2
  ESRRG WILD-TYPE 90 35     39
D21V9, multiclass
        clus
vv       ESRRG MUTATED ESRRG WILD-TYPE
  I                  7              90
  II                 3              35
  III+IV             2              39
D21V10, binary
                 cls
clus                0   1
  ESRRG MUTATED     0  12
  ESRRG WILD-TYPE   4 162
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ESRRG MUTATED      0   12
  ESRRG WILD-TYPE    4  162
     clus
vv    ESRRG MUTATED ESRRG WILD-TYPE
  NO              0               4
  YES            12             162
D21V11, continuous
D21V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ESRRG MUTATED                                             3
  ESRRG WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ESRRG MUTATED                                        5              3
  ESRRG WILD-TYPE                                     38             25
                 vv
clus              LIFELONG NON-SMOKER
  ESRRG MUTATED                     1
  ESRRG WILD-TYPE                   7
D21V13, multiclass
                                             clus
vv                                            ESRRG MUTATED ESRRG WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D21V14, continuous

Clustering(22) Variable = OR2T33 MUTATION ANALYSIS
D22V1, survival
                  sevent
clus2               0  1
  OR2T33 MUTATED    8  3
  OR2T33 WILD-TYPE 89 67
  OR2T33 MUTATED OR2T33 WILD-TYPE 
              11              156 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
               3               67 
$`OR2T33 MUTATED`
TCGA-18-3409 TCGA-18-5592 TCGA-34-2600 TCGA-37-3783 TCGA-43-2578 TCGA-43-5668 
       79.46         3.02        61.61         3.95        18.08         8.48 
TCGA-46-3768 TCGA-51-4080 TCGA-60-2713 TCGA-66-2742 TCGA-85-6560 
        9.96         0.39        47.87        21.07         0.36 

$`OR2T33 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       17.88        11.57        18.84         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 
        5.42         0.95         0.59         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 
       49.48        55.40        29.19         9.01        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       11.77        16.96        43.10         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       30.02        10.06        54.08         4.01        49.05         0.79 

  OR2T33 MUTATED OR2T33 WILD-TYPE 
            0.36             0.10 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
           79.46           173.79 
  OR2T33 MUTATED OR2T33 WILD-TYPE 
            9.96            18.36 
[1] "0.4 - 79.5 (10.0)"  "0.1 - 173.8 (18.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE"   "OR2T33 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR2T33 MUTATED" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" "OR2T33 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T33 WILD-TYPE"   "OR2T33 MUTATED" "OR2T33 WILD-TYPE" 
[1] "hr=" "1.4"
D22V2, continuous
D22V3, binary
                  cls
clus                 0   1
  OR2T33 MUTATED     2  12
  OR2T33 WILD-TYPE  45 119
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T33 MUTATED      2   12
  OR2T33 WILD-TYPE   45  119
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  FEMALE              2               45
  MALE               12              119
D22V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2T33 MUTATED                                       2
  OR2T33 WILD-TYPE                                     3
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2T33 MUTATED                                        0
  OR2T33 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T33 MUTATED                                                            12
  OR2T33 WILD-TYPE                                                         160
D22V5, multiclass
                                                             clus
vv                                                            OR2T33 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             12
                                                             clus
vv                                                            OR2T33 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              160
                  vv
clus                T1  T2  T3  T4
  OR2T33 MUTATED     5   5   3   1
  OR2T33 WILD-TYPE  31 111  11  11
D22V6, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  T1              5               31
  T2              5              111
  T3              3               11
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  OR2T33 MUTATED     8   5   1   0
  OR2T33 WILD-TYPE 109  34  16   5
D22V7, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  N0              8              109
  N1              5               34
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  OR2T33 MUTATED    12   1   0
  OR2T33 WILD-TYPE 153   2   6
D22V8, multiclass
    clus
vv   OR2T33 MUTATED OR2T33 WILD-TYPE
  M0             12              153
  M1              1                2
  MX              0                6
                  vv
clus                I II III+IV
  OR2T33 MUTATED    5  3      5
  OR2T33 WILD-TYPE 92 35     36
D22V9, multiclass
        clus
vv       OR2T33 MUTATED OR2T33 WILD-TYPE
  I                   5               92
  II                  3               35
  III+IV              5               36
D22V10, binary
                  cls
clus                 0   1
  OR2T33 MUTATED     0  14
  OR2T33 WILD-TYPE   4 160
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T33 MUTATED      0   14
  OR2T33 WILD-TYPE    4  160
     clus
vv    OR2T33 MUTATED OR2T33 WILD-TYPE
  NO               0                4
  YES             14              160
D22V11, continuous
D22V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T33 MUTATED                                             7
  OR2T33 WILD-TYPE                                          87
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T33 MUTATED                                        5              1
  OR2T33 WILD-TYPE                                     38             27
                  vv
clus               LIFELONG NON-SMOKER
  OR2T33 MUTATED                     0
  OR2T33 WILD-TYPE                   8
D22V13, multiclass
                                             clus
vv                                            OR2T33 MUTATED OR2T33 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               38
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D22V14, continuous

Clustering(23) Variable = OR2G6 MUTATION ANALYSIS
D23V1, survival
                 sevent
clus2              0  1
  OR2G6 MUTATED   11  4
  OR2G6 WILD-TYPE 86 66
  OR2G6 MUTATED OR2G6 WILD-TYPE 
             15             152 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
              4              66 
$`OR2G6 MUTATED`
TCGA-18-3409 TCGA-22-4599 TCGA-33-4583 TCGA-34-2600 TCGA-37-3789 TCGA-37-4135 
       79.46        38.17       141.34        61.61         0.43         6.81 
TCGA-39-5027 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-60-2698 TCGA-66-2759 
       60.76        18.84         8.48         7.00        10.22        25.02 
TCGA-66-2771 TCGA-66-2782 TCGA-85-6560 
       19.00        12.00         0.36 

$`OR2G6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6561 
       49.05         0.79 

  OR2G6 MUTATED OR2G6 WILD-TYPE 
           0.36            0.10 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
         141.34          173.79 
  OR2G6 MUTATED OR2G6 WILD-TYPE 
          18.84           17.42 
[1] "0.4 - 141.3 (18.8)" "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED"   "OR2G6 MUTATED"   "OR2G6 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR2G6 MUTATED" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" "OR2G6 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2G6 WILD-TYPE"   "OR2G6 MUTATED" "OR2G6 WILD-TYPE" 
[1] "hr=" "1.9"
D23V2, continuous
D23V3, binary
                 cls
clus                0   1
  OR2G6 MUTATED     2  14
  OR2G6 WILD-TYPE  45 117
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G6 MUTATED      2   14
  OR2G6 WILD-TYPE   45  117
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  FEMALE             2              45
  MALE              14             117
D23V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2G6 MUTATED                                       2
  OR2G6 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2G6 MUTATED                                        0
  OR2G6 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2G6 MUTATED                                                            14
  OR2G6 WILD-TYPE                                                         158
D23V5, multiclass
                                                             clus
vv                                                            OR2G6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            14
                                                             clus
vv                                                            OR2G6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             158
                 vv
clus               T1  T2  T3  T4
  OR2G6 MUTATED     4  10   1   1
  OR2G6 WILD-TYPE  32 106  13  11
D23V6, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  T1             4              32
  T2            10             106
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR2G6 MUTATED    11   4   1   0
  OR2G6 WILD-TYPE 106  35  16   5
D23V7, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  N0            11             106
  N1             4              35
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2G6 MUTATED    15   0   0
  OR2G6 WILD-TYPE 150   3   6
D23V8, multiclass
    clus
vv   OR2G6 MUTATED OR2G6 WILD-TYPE
  M0            15             150
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR2G6 MUTATED    7  5      3
  OR2G6 WILD-TYPE 90 33     38
D23V9, multiclass
        clus
vv       OR2G6 MUTATED OR2G6 WILD-TYPE
  I                  7              90
  II                 5              33
  III+IV             3              38
D23V10, binary
                 cls
clus                0   1
  OR2G6 MUTATED     0  16
  OR2G6 WILD-TYPE   4 158
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2G6 MUTATED      0   16
  OR2G6 WILD-TYPE    4  158
     clus
vv    OR2G6 MUTATED OR2G6 WILD-TYPE
  NO              0               4
  YES            16             158
D23V11, continuous
D23V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2G6 MUTATED                                            10
  OR2G6 WILD-TYPE                                          84
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2G6 MUTATED                                        4              1
  OR2G6 WILD-TYPE                                     39             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2G6 MUTATED                     1
  OR2G6 WILD-TYPE                   7
D23V13, multiclass
                                             clus
vv                                            OR2G6 MUTATED OR2G6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            10              84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              39
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D23V14, continuous

Clustering(24) Variable = USP29 MUTATION ANALYSIS
D24V1, survival
                 sevent
clus2              0  1
  USP29 MUTATED   10  6
  USP29 WILD-TYPE 87 64
  USP29 MUTATED USP29 WILD-TYPE 
             16             151 
  USP29 MUTATED USP29 WILD-TYPE 
              6              64 
$`USP29 MUTATED`
TCGA-18-3406 TCGA-22-5489 TCGA-33-4566 TCGA-34-2600 TCGA-39-5027 TCGA-39-5031 
       12.16        62.86       173.79        61.61        60.76        27.35 
TCGA-43-6143 TCGA-51-4079 TCGA-51-4081 TCGA-60-2708 TCGA-60-2721 TCGA-60-2725 
        7.00         0.39         2.07        68.45        26.07        23.64 
TCGA-66-2734 TCGA-66-2756 TCGA-66-2768 TCGA-66-2791 
       43.10         0.99         2.01         5.03 

$`USP29 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
        4.47        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         8.48         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 
        9.96         0.95         0.59         0.39        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        10.22        21.70        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 
       24.10        22.78         1.22        11.77        16.96        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         1.02         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  USP29 MUTATED USP29 WILD-TYPE 
           0.39            0.10 
  USP29 MUTATED USP29 WILD-TYPE 
         173.79          141.34 
  USP29 MUTATED USP29 WILD-TYPE 
         24.855          16.960 
[1] "0.4 - 173.8 (24.9)" "0.1 - 141.3 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" "USP29 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "USP29 MUTATED" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE"   "USP29 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"USP29 WILD-TYPE" "USP29 WILD-TYPE" "USP29 WILD-TYPE" 
[1] "hr=" "1.6"
D24V2, continuous
D24V3, binary
                 cls
clus                0   1
  USP29 MUTATED     6  11
  USP29 WILD-TYPE  41 120
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP29 MUTATED      6   11
  USP29 WILD-TYPE   41  120
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  FEMALE             6              41
  MALE              11             120
D24V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  USP29 MUTATED                                       1
  USP29 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  USP29 MUTATED                                        0
  USP29 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  USP29 MUTATED                                                            16
  USP29 WILD-TYPE                                                         156
D24V5, multiclass
                                                             clus
vv                                                            USP29 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            16
                                                             clus
vv                                                            USP29 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             156
                 vv
clus               T1  T2  T3  T4
  USP29 MUTATED     5  11   0   1
  USP29 WILD-TYPE  31 105  14  11
D24V6, multiclass
    clus
vv   USP29 MUTATED USP29 WILD-TYPE
  T1             5              31
  T2            11             105
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  USP29 MUTATED    13   3   0   1
  USP29 WILD-TYPE 104  36  17   4
D24V7, multiclass
    clus
vv   USP29 MUTATED USP29 WILD-TYPE
  N0            13             104
  N1             3              36
  N2             0              17
  N3             1               4
                 vv
clus               M0  M1  MX
  USP29 MUTATED    16   0   0
  USP29 WILD-TYPE 149   3   6
D24V8, multiclass
    clus
vv   USP29 MUTATED USP29 WILD-TYPE
  M0            16             149
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  USP29 MUTATED   12  3      2
  USP29 WILD-TYPE 85 35     39
D24V9, multiclass
        clus
vv       USP29 MUTATED USP29 WILD-TYPE
  I                 12              85
  II                 3              35
  III+IV             2              39
D24V10, binary
                 cls
clus                0   1
  USP29 MUTATED     0  17
  USP29 WILD-TYPE   4 157
[1] "tbl2"
                 cls
clus              [,1] [,2]
  USP29 MUTATED      0   17
  USP29 WILD-TYPE    4  157
     clus
vv    USP29 MUTATED USP29 WILD-TYPE
  NO              0               4
  YES            17             157
D24V11, continuous
D24V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  USP29 MUTATED                                            12
  USP29 WILD-TYPE                                          82
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  USP29 MUTATED                                        1              3
  USP29 WILD-TYPE                                     42             25
                 vv
clus              LIFELONG NON-SMOKER
  USP29 MUTATED                     1
  USP29 WILD-TYPE                   7
D24V13, multiclass
                                             clus
vv                                            USP29 MUTATED USP29 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            12              82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D24V14, continuous

Clustering(25) Variable = REG3A MUTATION ANALYSIS
D25V1, survival
                 sevent
clus2              0  1
  REG3A MUTATED    5  6
  REG3A WILD-TYPE 92 64
  REG3A MUTATED REG3A WILD-TYPE 
             11             156 
  REG3A MUTATED REG3A WILD-TYPE 
              6              64 
$`REG3A MUTATED`
TCGA-21-5782 TCGA-21-5786 TCGA-22-5473 TCGA-33-4586 TCGA-34-5239 TCGA-34-5929 
       31.63        21.57        63.52        14.07        10.82         4.96 
TCGA-39-5036 TCGA-51-4079 TCGA-56-1622 TCGA-66-2756 TCGA-66-2787 
       35.64         0.39        28.93         0.99        40.01 

$`REG3A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53       141.34        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 
       32.84        50.24        51.78        32.68         9.04         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       27.35        15.58         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 
        9.96         0.95         0.59         0.39         2.07         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  REG3A MUTATED REG3A WILD-TYPE 
           0.39            0.10 
  REG3A MUTATED REG3A WILD-TYPE 
          63.52          173.79 
  REG3A MUTATED REG3A WILD-TYPE 
          21.57           17.42 
[1] "0.4 - 63.5 (21.6)"  "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "REG3A MUTATED" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "REG3A MUTATED" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "REG3A MUTATED" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3A WILD-TYPE" "REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3A WILD-TYPE"   "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "REG3A MUTATED" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
[1] "hr=" "1.4"
D25V2, continuous
D25V3, binary
                 cls
clus                0   1
  REG3A MUTATED     3   8
  REG3A WILD-TYPE  44 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      3    8
  REG3A WILD-TYPE   44  123
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  FEMALE             3              44
  MALE               8             123
D25V4, continuous
[1] "Remove cluster labels:" "REG3A MUTATED"         
clus
  REG3A MUTATED REG3A WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5474      TCGA-22-5477 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" "REG3A WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"REG3A WILD-TYPE" "REG3A WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  REG3A MUTATED                                       0
  REG3A WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  REG3A MUTATED                                        0
  REG3A WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG3A MUTATED                                                            11
  REG3A WILD-TYPE                                                         161
D25V5, multiclass
                                                             clus
vv                                                            REG3A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            REG3A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
                 vv
clus               T1  T2  T3  T4
  REG3A MUTATED     1   7   1   2
  REG3A WILD-TYPE  35 109  13  10
D25V6, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  T1             1              35
  T2             7             109
  T3             1              13
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  REG3A MUTATED    10   0   1   0
  REG3A WILD-TYPE 107  39  16   5
D25V7, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  N0            10             107
  N1             0              39
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  REG3A MUTATED    10   0   0
  REG3A WILD-TYPE 155   3   6
D25V8, multiclass
    clus
vv   REG3A MUTATED REG3A WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  REG3A MUTATED    8  0      3
  REG3A WILD-TYPE 89 38     38
D25V9, multiclass
        clus
vv       REG3A MUTATED REG3A WILD-TYPE
  I                  8              89
  II                 0              38
  III+IV             3              38
D25V10, binary
                 cls
clus                0   1
  REG3A MUTATED     0  11
  REG3A WILD-TYPE   4 163
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3A MUTATED      0   11
  REG3A WILD-TYPE    4  163
     clus
vv    REG3A MUTATED REG3A WILD-TYPE
  NO              0               4
  YES            11             163
D25V11, continuous
D25V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  REG3A MUTATED                                             7
  REG3A WILD-TYPE                                          87
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  REG3A MUTATED                                        2              1
  REG3A WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  REG3A MUTATED                     0
  REG3A WILD-TYPE                   8
D25V13, multiclass
                                             clus
vv                                            REG3A MUTATED REG3A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D25V14, continuous

Clustering(26) Variable = PNLIPRP3 MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                 0  1
  PNLIPRP3 MUTATED    5  6
  PNLIPRP3 WILD-TYPE 92 64
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                11                156 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
                 6                 64 
$`PNLIPRP3 MUTATED`
TCGA-18-3414 TCGA-21-5784 TCGA-21-5787 TCGA-22-4601 TCGA-22-5473 TCGA-33-6737 
       13.02        29.85        10.82        34.75        63.52        19.76 
TCGA-34-5928 TCGA-37-4141 TCGA-60-2722 TCGA-66-2759 TCGA-66-2782 
        5.52         0.39        24.10        25.02        12.00 

$`PNLIPRP3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        24.13        38.17        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        14.07         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
       22.95         4.96         3.95         0.43         7.82         6.81 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99         0.99        20.98         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 
        2.01        19.00        12.03         3.98        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
              0.39               0.10 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
             63.52             173.79 
  PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE 
             19.76              17.42 
[1] "0.4 - 63.5 (19.8)"  "0.1 - 173.8 (17.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
  "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
  "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
  "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE"   "PNLIPRP3 MUTATED" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
"PNLIPRP3 WILD-TYPE" "PNLIPRP3 WILD-TYPE" 
[1] "hr=" "1.5"
D26V2, continuous
D26V3, binary
                    cls
clus                   0   1
  PNLIPRP3 MUTATED     4   8
  PNLIPRP3 WILD-TYPE  43 123
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PNLIPRP3 MUTATED      4    8
  PNLIPRP3 WILD-TYPE   43  123
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  FEMALE                4                 43
  MALE                  8                123
D26V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PNLIPRP3 MUTATED                                       0
  PNLIPRP3 WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PNLIPRP3 MUTATED                                        0
  PNLIPRP3 WILD-TYPE                                      1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PNLIPRP3 MUTATED                                                            12
  PNLIPRP3 WILD-TYPE                                                         160
D26V5, multiclass
                                                             clus
vv                                                            PNLIPRP3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               12
                                                             clus
vv                                                            PNLIPRP3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                       1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                160
                    vv
clus                  T1  T2  T3  T4
  PNLIPRP3 MUTATED     1   6   2   3
  PNLIPRP3 WILD-TYPE  35 110  12   9
D26V6, multiclass
    clus
vv   PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  T1                1                 35
  T2                6                110
  T3                2                 12
  T4                3                  9
                    vv
clus                  N0  N1  N2  N3
  PNLIPRP3 MUTATED     6   3   3   0
  PNLIPRP3 WILD-TYPE 111  36  14   5
D26V7, multiclass
    clus
vv   PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  N0                6                111
  N1                3                 36
  N2                3                 14
  N3                0                  5
                    vv
clus                  M0  M1  MX
  PNLIPRP3 MUTATED    11   1   0
  PNLIPRP3 WILD-TYPE 154   2   6
D26V8, multiclass
    clus
vv   PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  M0               11                154
  M1                1                  2
  MX                0                  6
                    vv
clus                  I II III+IV
  PNLIPRP3 MUTATED    3  4      5
  PNLIPRP3 WILD-TYPE 94 34     36
D26V9, multiclass
        clus
vv       PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  I                     3                 94
  II                    4                 34
  III+IV                5                 36
D26V10, binary
                    cls
clus                   0   1
  PNLIPRP3 MUTATED     1  11
  PNLIPRP3 WILD-TYPE   3 163
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  PNLIPRP3 MUTATED      1   11
  PNLIPRP3 WILD-TYPE    3  163
     clus
vv    PNLIPRP3 MUTATED PNLIPRP3 WILD-TYPE
  NO                 1                  3
  YES               11                163
D26V11, continuous
D26V12, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PNLIPRP3 MUTATED                                             6
  PNLIPRP3 WILD-TYPE                                          88
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PNLIPRP3 MUTATED                                        3              2
  PNLIPRP3 WILD-TYPE                                     40             26
                    vv
clus                 LIFELONG NON-SMOKER
  PNLIPRP3 MUTATED                     1
  PNLIPRP3 WILD-TYPE                   7
D26V13, multiclass
                                             clus
vv                                            PNLIPRP3 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                6
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     3
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        1
                                             clus
vv                                            PNLIPRP3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      40
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                          7
D26V14, continuous

Clustering(27) Variable = MAGEB2 MUTATION ANALYSIS
D27V1, survival
                  sevent
clus2               0  1
  MAGEB2 MUTATED    5  2
  MAGEB2 WILD-TYPE 92 68
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               7              160 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
               2               68 
$`MAGEB2 MUTATED`
TCGA-33-4538 TCGA-34-5929 TCGA-56-6545 TCGA-60-2709 TCGA-66-2755 TCGA-66-2757 
       97.94         4.96         2.04        49.48         0.92         0.99 
TCGA-66-2781 
        3.98 

$`MAGEB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 
        0.10         1.02        10.22        21.70        68.45        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 
       16.96        43.10        21.07         0.99         2.01         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       12.03        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
            0.92             0.10 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
           97.94           173.79 
  MAGEB2 MUTATED MAGEB2 WILD-TYPE 
            3.98            18.46 
[1] "0.9 - 97.9 (4.0)"   "0.1 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
  "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE"   "MAGEB2 MUTATED" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" "MAGEB2 WILD-TYPE" 
[1] "hr=" "1.2"
D27V2, continuous
D27V3, binary
                  cls
clus                 0   1
  MAGEB2 MUTATED     3   6
  MAGEB2 WILD-TYPE  44 125
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEB2 MUTATED      3    6
  MAGEB2 WILD-TYPE   44  125
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  FEMALE              3               44
  MALE                6              125
D27V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  MAGEB2 MUTATED                                       0
  MAGEB2 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  MAGEB2 MUTATED                                        0
  MAGEB2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MAGEB2 MUTATED                                                             9
  MAGEB2 WILD-TYPE                                                         163
D27V5, multiclass
                                                             clus
vv                                                            MAGEB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            MAGEB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
                  vv
clus                T1  T2  T3  T4
  MAGEB2 MUTATED     1   7   0   1
  MAGEB2 WILD-TYPE  35 109  14  11
D27V6, multiclass
    clus
vv   MAGEB2 MUTATED MAGEB2 WILD-TYPE
  T1              1               35
  T2              7              109
  T3              0               14
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  MAGEB2 MUTATED     8   0   1   0
  MAGEB2 WILD-TYPE 109  39  16   5
D27V7, multiclass
    clus
vv   MAGEB2 MUTATED MAGEB2 WILD-TYPE
  N0              8              109
  N1              0               39
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  MAGEB2 MUTATED     8   0   1
  MAGEB2 WILD-TYPE 157   3   5
D27V8, multiclass
    clus
vv   MAGEB2 MUTATED MAGEB2 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  MAGEB2 MUTATED    7  1      1
  MAGEB2 WILD-TYPE 90 37     40
D27V9, multiclass
        clus
vv       MAGEB2 MUTATED MAGEB2 WILD-TYPE
  I                   7               90
  II                  1               37
  III+IV              1               40
D27V10, binary
                  cls
clus                 0   1
  MAGEB2 MUTATED     0   9
  MAGEB2 WILD-TYPE   4 165
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MAGEB2 MUTATED      0    9
  MAGEB2 WILD-TYPE    4  165
     clus
vv    MAGEB2 MUTATED MAGEB2 WILD-TYPE
  NO               0                4
  YES              9              165
D27V11, continuous
D27V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MAGEB2 MUTATED                                             5
  MAGEB2 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MAGEB2 MUTATED                                        2              2
  MAGEB2 WILD-TYPE                                     41             26
                  vv
clus               LIFELONG NON-SMOKER
  MAGEB2 MUTATED                     0
  MAGEB2 WILD-TYPE                   8
D27V13, multiclass
                                             clus
vv                                            MAGEB2 MUTATED MAGEB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D27V14, continuous

Clustering(28) Variable = SPHKAP MUTATION ANALYSIS
D28V1, survival
                  sevent
clus2               0  1
  SPHKAP MUTATED   14 11
  SPHKAP WILD-TYPE 83 59
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              25              142 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
              11               59 
$`SPHKAP MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 TCGA-18-3416 TCGA-21-1071 TCGA-21-1077 
       79.46        46.52        13.02        28.34        46.88        34.78 
TCGA-21-5782 TCGA-21-5784 TCGA-22-1016 TCGA-22-4613 TCGA-22-5473 TCGA-33-4566 
       31.63        29.85        27.02        11.77        63.52       173.79 
TCGA-33-4583 TCGA-34-5928 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
      141.34         5.52         6.81         0.39        74.07        44.71 
TCGA-51-4080 TCGA-60-2722 TCGA-66-2757 TCGA-66-2766 TCGA-66-2773 TCGA-66-2785 
        0.39        24.10         0.99         1.02         3.02         1.94 
TCGA-66-2791 
        5.03 

$`SPHKAP WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3412 TCGA-18-3415 
       12.16         4.47        81.07         4.80        11.34        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 
        3.02        27.16       115.59        60.89        15.55         9.30 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       19.30        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 
       82.98       114.05        97.94        43.10       103.53        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-5819 TCGA-39-5021 
        4.96         3.95         0.43         7.82         3.39        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.42         9.96         0.95         0.59         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        2.01         2.01         2.01        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  SPHKAP MUTATED SPHKAP WILD-TYPE 
            0.39             0.10 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
          173.79           115.59 
  SPHKAP MUTATED SPHKAP WILD-TYPE 
           27.02            16.78 
[1] "0.4 - 173.8 (27.0)" "0.1 - 115.6 (16.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" "SPHKAP WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE"   "SPHKAP MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" "SPHKAP WILD-TYPE" 
[1] "hr=" "1.3"
D28V2, continuous
D28V3, binary
                  cls
clus                 0   1
  SPHKAP MUTATED     7  20
  SPHKAP WILD-TYPE  40 111
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPHKAP MUTATED      7   20
  SPHKAP WILD-TYPE   40  111
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  FEMALE              7               40
  MALE               20              111
D28V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SPHKAP MUTATED                                       3
  SPHKAP WILD-TYPE                                     2
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SPHKAP MUTATED                                        0
  SPHKAP WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPHKAP MUTATED                                                            24
  SPHKAP WILD-TYPE                                                         148
D28V5, multiclass
                                                             clus
vv                                                            SPHKAP MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             24
                                                             clus
vv                                                            SPHKAP WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              148
                  vv
clus               T1 T2 T3 T4
  SPHKAP MUTATED    5 19  1  2
  SPHKAP WILD-TYPE 31 97 13 10
D28V6, multiclass
    clus
vv   SPHKAP MUTATED SPHKAP WILD-TYPE
  T1              5               31
  T2             19               97
  T3              1               13
  T4              2               10
                  vv
clus                N0  N1  N2  N3
  SPHKAP MUTATED    17   7   2   1
  SPHKAP WILD-TYPE 100  32  15   4
D28V7, multiclass
    clus
vv   SPHKAP MUTATED SPHKAP WILD-TYPE
  N0             17              100
  N1              7               32
  N2              2               15
  N3              1                4
                  vv
clus                M0  M1  MX
  SPHKAP MUTATED    25   1   0
  SPHKAP WILD-TYPE 140   2   6
D28V8, multiclass
    clus
vv   SPHKAP MUTATED SPHKAP WILD-TYPE
  M0             25              140
  M1              1                2
  MX              0                6
                  vv
clus                I II III+IV
  SPHKAP MUTATED   14  6      6
  SPHKAP WILD-TYPE 83 32     35
D28V9, multiclass
        clus
vv       SPHKAP MUTATED SPHKAP WILD-TYPE
  I                  14               83
  II                  6               32
  III+IV              6               35
D28V10, binary
                  cls
clus                 0   1
  SPHKAP MUTATED     0  27
  SPHKAP WILD-TYPE   4 147
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SPHKAP MUTATED      0   27
  SPHKAP WILD-TYPE    4  147
     clus
vv    SPHKAP MUTATED SPHKAP WILD-TYPE
  NO               0                4
  YES             27              147
D28V11, continuous
D28V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SPHKAP MUTATED                                            13
  SPHKAP WILD-TYPE                                          81
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SPHKAP MUTATED                                        9              4
  SPHKAP WILD-TYPE                                     34             24
                  vv
clus               LIFELONG NON-SMOKER
  SPHKAP MUTATED                     1
  SPHKAP WILD-TYPE                   7
D28V13, multiclass
                                             clus
vv                                            SPHKAP MUTATED SPHKAP WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             13               81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   9               34
  CURRENT SMOKER                                           4               24
  LIFELONG NON-SMOKER                                      1                7
D28V14, continuous

Clustering(29) Variable = CFHR4 MUTATION ANALYSIS
D29V1, survival
                 sevent
clus2              0  1
  CFHR4 MUTATED    6  4
  CFHR4 WILD-TYPE 91 66
  CFHR4 MUTATED CFHR4 WILD-TYPE 
             10             157 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
              4              66 
$`CFHR4 MUTATED`
TCGA-22-4613 TCGA-33-4538 TCGA-39-5027 TCGA-46-3768 TCGA-60-2720 TCGA-60-2724 
       11.77        97.94        60.76         9.96         3.16         1.22 
TCGA-66-2734 TCGA-66-2763 TCGA-66-2777 TCGA-66-2782 
       43.10         0.99         2.01        12.00 

$`CFHR4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 
        7.00         6.02         2.79         5.42         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 
       29.19         9.01        47.87        35.34        30.61        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 
       24.10        22.78        23.64        11.77        16.96        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
       19.00         3.02        19.00        12.03         3.98        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  CFHR4 MUTATED CFHR4 WILD-TYPE 
           0.99            0.10 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
          97.94          173.79 
  CFHR4 MUTATED CFHR4 WILD-TYPE 
         10.865          18.840 
[1] "1.0 - 97.9 (10.9)"  "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" "CFHR4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" "CFHR4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" "CFHR4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE"   "CFHR4 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "CFHR4 MUTATED" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
[1] "hr=" "1.1"
D29V2, continuous
D29V3, binary
                 cls
clus                0   1
  CFHR4 MUTATED     4   6
  CFHR4 WILD-TYPE  43 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR4 MUTATED      4    6
  CFHR4 WILD-TYPE   43  125
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  FEMALE             4              43
  MALE               6             125
D29V4, continuous
[1] "Remove cluster labels:" "CFHR4 MUTATED"         
clus
  CFHR4 MUTATED CFHR4 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" "CFHR4 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CFHR4 MUTATED                                       0
  CFHR4 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CFHR4 MUTATED                                        0
  CFHR4 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CFHR4 MUTATED                                                            10
  CFHR4 WILD-TYPE                                                         162
D29V5, multiclass
                                                             clus
vv                                                            CFHR4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            CFHR4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
                 vv
clus               T1  T2  T3  T4
  CFHR4 MUTATED     1   6   3   0
  CFHR4 WILD-TYPE  35 110  11  12
D29V6, multiclass
    clus
vv   CFHR4 MUTATED CFHR4 WILD-TYPE
  T1             1              35
  T2             6             110
  T3             3              11
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  CFHR4 MUTATED     7   2   1   0
  CFHR4 WILD-TYPE 110  37  16   5
D29V7, multiclass
    clus
vv   CFHR4 MUTATED CFHR4 WILD-TYPE
  N0             7             110
  N1             2              37
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  CFHR4 MUTATED    10   0   0
  CFHR4 WILD-TYPE 155   3   6
D29V8, multiclass
    clus
vv   CFHR4 MUTATED CFHR4 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  CFHR4 MUTATED    6  1      3
  CFHR4 WILD-TYPE 91 37     38
D29V9, multiclass
        clus
vv       CFHR4 MUTATED CFHR4 WILD-TYPE
  I                  6              91
  II                 1              37
  III+IV             3              38
D29V10, binary
                 cls
clus                0   1
  CFHR4 MUTATED     0  10
  CFHR4 WILD-TYPE   4 164
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CFHR4 MUTATED      0   10
  CFHR4 WILD-TYPE    4  164
     clus
vv    CFHR4 MUTATED CFHR4 WILD-TYPE
  NO              0               4
  YES            10             164
D29V11, continuous
D29V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CFHR4 MUTATED                                             8
  CFHR4 WILD-TYPE                                          86
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CFHR4 MUTATED                                        1              1
  CFHR4 WILD-TYPE                                     42             27
                 vv
clus              LIFELONG NON-SMOKER
  CFHR4 MUTATED                     0
  CFHR4 WILD-TYPE                   8
D29V13, multiclass
                                             clus
vv                                            CFHR4 MUTATED CFHR4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D29V14, continuous

Clustering(30) Variable = CPS1 MUTATION ANALYSIS
D30V1, survival
                sevent
clus2             0  1
  CPS1 MUTATED   16  9
  CPS1 WILD-TYPE 81 61
  CPS1 MUTATED CPS1 WILD-TYPE 
            25            142 
  CPS1 MUTATED CPS1 WILD-TYPE 
             9             61 
$`CPS1 MUTATED`
TCGA-18-3409 TCGA-18-3415 TCGA-18-3419 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       79.46        59.51         1.61         3.02       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1081 TCGA-21-5784 TCGA-22-4591 TCGA-22-5482 
       60.89        34.78         9.30        29.85        20.45        11.74 
TCGA-34-5236 TCGA-39-5016 TCGA-46-6026 TCGA-51-4080 TCGA-60-2698 TCGA-60-2720 
        9.04        74.07         0.59         0.39        10.22         3.16 
TCGA-60-2722 TCGA-66-2757 TCGA-66-2759 TCGA-66-2785 TCGA-66-2786 TCGA-66-2789 
       24.10         0.99        25.02         1.94        25.97         4.04 
TCGA-85-6560 
        0.36 

$`CPS1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        28.34        24.92        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1078 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 
       90.51        27.16        15.55        31.63        21.57        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
        7.33         4.31         1.74        14.10        27.02        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       71.34        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.95         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2723 
        9.01        47.87        35.34        30.61        26.07        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 
        0.99         2.01         0.92         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       24.95        40.01        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       54.08         4.01        49.05         0.79 

  CPS1 MUTATED CPS1 WILD-TYPE 
          0.36           0.10 
  CPS1 MUTATED CPS1 WILD-TYPE 
        115.59         173.79 
  CPS1 MUTATED CPS1 WILD-TYPE 
         11.74          17.98 
[1] "0.4 - 115.6 (11.7)" "0.1 - 173.8 (18.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "CPS1 MUTATED"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "CPS1 MUTATED"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
  "CPS1 MUTATED"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE"   "CPS1 MUTATED" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED"   "CPS1 MUTATED" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" "CPS1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CPS1 WILD-TYPE"   "CPS1 MUTATED" "CPS1 WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
                cls
clus               0   1
  CPS1 MUTATED     6  19
  CPS1 WILD-TYPE  41 112
[1] "tbl2"
                cls
clus             [,1] [,2]
  CPS1 MUTATED      6   19
  CPS1 WILD-TYPE   41  112
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  FEMALE            6             41
  MALE             19            112
D30V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CPS1 MUTATED                                       3
  CPS1 WILD-TYPE                                     2
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CPS1 MUTATED                                        0
  CPS1 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CPS1 MUTATED                                                            22
  CPS1 WILD-TYPE                                                         150
D30V5, multiclass
                                                             clus
vv                                                            CPS1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           22
                                                             clus
vv                                                            CPS1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            150
                vv
clus              T1  T2  T3  T4
  CPS1 MUTATED     4  16   4   1
  CPS1 WILD-TYPE  32 100  10  11
D30V6, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  T1            4             32
  T2           16            100
  T3            4             10
  T4            1             11
                vv
clus              N0  N1  N2  N3
  CPS1 MUTATED    13   9   2   1
  CPS1 WILD-TYPE 104  30  15   4
D30V7, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  N0           13            104
  N1            9             30
  N2            2             15
  N3            1              4
                vv
clus              M0  M1  MX
  CPS1 MUTATED    24   0   0
  CPS1 WILD-TYPE 141   3   6
D30V8, multiclass
    clus
vv   CPS1 MUTATED CPS1 WILD-TYPE
  M0           24            141
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  CPS1 MUTATED    9  9      6
  CPS1 WILD-TYPE 88 29     35
D30V9, multiclass
        clus
vv       CPS1 MUTATED CPS1 WILD-TYPE
  I                 9             88
  II                9             29
  III+IV            6             35
D30V10, binary
                cls
clus               0   1
  CPS1 MUTATED     1  24
  CPS1 WILD-TYPE   3 150
[1] "tbl2"
                cls
clus             [,1] [,2]
  CPS1 MUTATED      1   24
  CPS1 WILD-TYPE    3  150
     clus
vv    CPS1 MUTATED CPS1 WILD-TYPE
  NO             1              3
  YES           24            150
D30V11, continuous
D30V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CPS1 MUTATED                                            16
  CPS1 WILD-TYPE                                          78
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CPS1 MUTATED                                        5              3
  CPS1 WILD-TYPE                                     38             25
                vv
clus             LIFELONG NON-SMOKER
  CPS1 MUTATED                     0
  CPS1 WILD-TYPE                   8
D30V13, multiclass
                                             clus
vv                                            CPS1 MUTATED CPS1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           16             78
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5             38
  CURRENT SMOKER                                         3             25
  LIFELONG NON-SMOKER                                    0              8
D30V14, continuous

Clustering(31) Variable = ELTD1 MUTATION ANALYSIS
D31V1, survival
                 sevent
clus2              0  1
  ELTD1 MUTATED    9  8
  ELTD1 WILD-TYPE 88 62
  ELTD1 MUTATED ELTD1 WILD-TYPE 
             17             150 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
              8              62 
$`ELTD1 MUTATED`
TCGA-18-3409 TCGA-18-3419 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 TCGA-22-5473 
       79.46         1.61         4.31        14.10        27.02        63.52 
TCGA-33-4566 TCGA-34-5239 TCGA-37-3783 TCGA-37-4133 TCGA-43-5668 TCGA-56-6546 
      173.79        10.82         3.95         7.82         8.48         1.02 
TCGA-60-2698 TCGA-60-2722 TCGA-60-2726 TCGA-66-2782 TCGA-85-6561 
       10.22        24.10        11.77        12.00         0.79 

$`ELTD1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-4591 TCGA-22-4593 
       21.57        10.82         7.33         1.74        20.45        35.08 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       31.69        64.90        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        4.96         0.43         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57        18.84         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2707 
        0.39         2.07        28.93         0.10         2.04        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       23.64        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
        3.02         2.01        19.00        12.03         3.98        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 

  ELTD1 MUTATED ELTD1 WILD-TYPE 
           0.79            0.10 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
         173.79          141.34 
  ELTD1 MUTATED ELTD1 WILD-TYPE 
          10.82           19.00 
[1] "0.8 - 173.8 (10.8)" "0.1 - 141.3 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "ELTD1 MUTATED"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ELTD1 WILD-TYPE"   "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "ELTD1 MUTATED" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ELTD1 WILD-TYPE" "ELTD1 WILD-TYPE"   "ELTD1 MUTATED" 
[1] "hr=" "1.1"
D31V2, continuous
D31V3, binary
                 cls
clus                0   1
  ELTD1 MUTATED     1  17
  ELTD1 WILD-TYPE  46 114
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      1   17
  ELTD1 WILD-TYPE   46  114
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  FEMALE             1              46
  MALE              17             114
D31V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ELTD1 MUTATED                                       1
  ELTD1 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ELTD1 MUTATED                                        0
  ELTD1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ELTD1 MUTATED                                                            17
  ELTD1 WILD-TYPE                                                         155
D31V5, multiclass
                                                             clus
vv                                                            ELTD1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            17
                                                             clus
vv                                                            ELTD1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             155
                 vv
clus               T1  T2  T3  T4
  ELTD1 MUTATED     3   9   4   2
  ELTD1 WILD-TYPE  33 107  10  10
D31V6, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  T1             3              33
  T2             9             107
  T3             4              10
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  ELTD1 MUTATED    11   6   1   0
  ELTD1 WILD-TYPE 106  33  16   5
D31V7, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  N0            11             106
  N1             6              33
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  ELTD1 MUTATED    17   0   1
  ELTD1 WILD-TYPE 148   3   5
D31V8, multiclass
    clus
vv   ELTD1 MUTATED ELTD1 WILD-TYPE
  M0            17             148
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  ELTD1 MUTATED    5  7      4
  ELTD1 WILD-TYPE 92 31     37
D31V9, multiclass
        clus
vv       ELTD1 MUTATED ELTD1 WILD-TYPE
  I                  5              92
  II                 7              31
  III+IV             4              37
D31V10, binary
                 cls
clus                0   1
  ELTD1 MUTATED     0  18
  ELTD1 WILD-TYPE   4 156
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ELTD1 MUTATED      0   18
  ELTD1 WILD-TYPE    4  156
     clus
vv    ELTD1 MUTATED ELTD1 WILD-TYPE
  NO              0               4
  YES            18             156
D31V11, continuous
D31V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ELTD1 MUTATED                                             9
  ELTD1 WILD-TYPE                                          85
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ELTD1 MUTATED                                        5              1
  ELTD1 WILD-TYPE                                     38             27
                 vv
clus              LIFELONG NON-SMOKER
  ELTD1 MUTATED                     1
  ELTD1 WILD-TYPE                   7
D31V13, multiclass
                                             clus
vv                                            ELTD1 MUTATED ELTD1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D31V14, continuous

Clustering(32) Variable = OR4M2 MUTATION ANALYSIS
D32V1, survival
                 sevent
clus2              0  1
  OR4M2 MUTATED    7  4
  OR4M2 WILD-TYPE 90 66
  OR4M2 MUTATED OR4M2 WILD-TYPE 
             11             156 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              4              66 
$`OR4M2 MUTATED`
TCGA-22-0944 TCGA-22-4591 TCGA-33-4533 TCGA-39-5037 TCGA-43-5668 TCGA-46-6026 
        7.33        20.45       114.05         0.79         8.48         0.59 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2770 TCGA-66-2773 TCGA-66-2791 
        0.99        20.98        23.01         3.02         5.03 

$`OR4M2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57        10.82         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60        82.98        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        11.57        18.84         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
        2.79         5.42         9.96         0.95         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2759 
       21.07         0.99         2.01         0.92         0.99        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 
        0.99         2.01         1.02         2.01         2.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 
        1.94        25.97        40.01        22.98         4.04        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  OR4M2 MUTATED OR4M2 WILD-TYPE 
           0.59            0.10 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
         114.05          173.79 
  OR4M2 MUTATED OR4M2 WILD-TYPE 
           7.33           18.46 
[1] "0.6 - 114.0 (7.3)"  "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
  "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M2 WILD-TYPE"   "OR4M2 MUTATED" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE"   "OR4M2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
[1] "hr=" "1.2"
D32V2, continuous
D32V3, binary
                 cls
clus                0   1
  OR4M2 MUTATED     2  12
  OR4M2 WILD-TYPE  45 119
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M2 MUTATED      2   12
  OR4M2 WILD-TYPE   45  119
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  FEMALE             2              45
  MALE              12             119
D32V4, continuous
[1] "Remove cluster labels:" "OR4M2 MUTATED"         
clus
  OR4M2 MUTATED OR4M2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4593 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722 
"OR4M2 WILD-TYPE" "OR4M2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR4M2 MUTATED                                       0
  OR4M2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR4M2 MUTATED                                        1
  OR4M2 WILD-TYPE                                      0
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4M2 MUTATED                                                            13
  OR4M2 WILD-TYPE                                                         159
D32V5, multiclass
                                                             clus
vv                                                            OR4M2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            OR4M2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
                 vv
clus               T1  T2  T3  T4
  OR4M2 MUTATED     4   8   2   0
  OR4M2 WILD-TYPE  32 108  12  12
D32V6, multiclass
    clus
vv   OR4M2 MUTATED OR4M2 WILD-TYPE
  T1             4              32
  T2             8             108
  T3             2              12
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR4M2 MUTATED     9   3   1   1
  OR4M2 WILD-TYPE 108  36  16   4
D32V7, multiclass
    clus
vv   OR4M2 MUTATED OR4M2 WILD-TYPE
  N0             9             108
  N1             3              36
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  OR4M2 MUTATED    14   0   0
  OR4M2 WILD-TYPE 151   3   6
D32V8, multiclass
    clus
vv   OR4M2 MUTATED OR4M2 WILD-TYPE
  M0            14             151
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR4M2 MUTATED    7  5      2
  OR4M2 WILD-TYPE 90 33     39
D32V9, multiclass
        clus
vv       OR4M2 MUTATED OR4M2 WILD-TYPE
  I                  7              90
  II                 5              33
  III+IV             2              39
D32V10, binary
                 cls
clus                0   1
  OR4M2 MUTATED     1  13
  OR4M2 WILD-TYPE   3 161
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M2 MUTATED      1   13
  OR4M2 WILD-TYPE    3  161
     clus
vv    OR4M2 MUTATED OR4M2 WILD-TYPE
  NO              1               3
  YES            13             161
D32V11, continuous
D32V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4M2 MUTATED                                             5
  OR4M2 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4M2 MUTATED                                        5              3
  OR4M2 WILD-TYPE                                     38             25
                 vv
clus              LIFELONG NON-SMOKER
  OR4M2 MUTATED                     1
  OR4M2 WILD-TYPE                   7
D32V13, multiclass
                                             clus
vv                                            OR4M2 MUTATED OR4M2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  5              38
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D32V14, continuous

Clustering(33) Variable = OR51B2 MUTATION ANALYSIS
D33V1, survival
                  sevent
clus2               0  1
  OR51B2 MUTATED    6  4
  OR51B2 WILD-TYPE 91 66
  OR51B2 MUTATED OR51B2 WILD-TYPE 
              10              157 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
               4               66 
$`OR51B2 MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-21-1077 TCGA-22-1016 TCGA-22-5482 TCGA-33-4532 
       12.16        79.46        34.78        27.02        11.74        82.98 
TCGA-60-2713 TCGA-66-2757 TCGA-66-2766 TCGA-66-2785 
       47.87         0.99         1.02         1.94 

$`OR51B2 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 
       10.82         7.33         4.31         1.74        14.10        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
        0.79        71.34        30.08        62.86        56.32        16.60 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
       24.95        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  OR51B2 MUTATED OR51B2 WILD-TYPE 
            0.99             0.10 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
           82.98           173.79 
  OR51B2 MUTATED OR51B2 WILD-TYPE 
           19.59            17.88 
[1] "1.0 - 83.0 (19.6)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE"   "OR51B2 MUTATED" "OR51B2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
[1] "hr=" "1.2"
D33V2, continuous
D33V3, binary
                  cls
clus                 0   1
  OR51B2 MUTATED     1   9
  OR51B2 WILD-TYPE  46 122
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51B2 MUTATED      1    9
  OR51B2 WILD-TYPE   46  122
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  FEMALE              1               46
  MALE                9              122
D33V4, continuous
[1] "Remove cluster labels:" "OR51B2 MUTATED"        
clus
  OR51B2 MUTATED OR51B2 WILD-TYPE 
               2               34 
      TCGA-18-3407       TCGA-18-3410       TCGA-18-3414       TCGA-18-3419 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5787       TCGA-22-4591       TCGA-22-4593 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5485 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR51B2 WILD-TYPE" "OR51B2 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR51B2 MUTATED                                       1
  OR51B2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR51B2 MUTATED                                        0
  OR51B2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR51B2 MUTATED                                                             9
  OR51B2 WILD-TYPE                                                         163
D33V5, multiclass
                                                             clus
vv                                                            OR51B2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            OR51B2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
                  vv
clus                T1  T2  T3  T4
  OR51B2 MUTATED     3   7   0   0
  OR51B2 WILD-TYPE  33 109  14  12
D33V6, multiclass
    clus
vv   OR51B2 MUTATED OR51B2 WILD-TYPE
  T1              3               33
  T2              7              109
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR51B2 MUTATED     8   1   1   0
  OR51B2 WILD-TYPE 109  38  16   5
D33V7, multiclass
    clus
vv   OR51B2 MUTATED OR51B2 WILD-TYPE
  N0              8              109
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  OR51B2 MUTATED    10   0   0
  OR51B2 WILD-TYPE 155   3   6
D33V8, multiclass
    clus
vv   OR51B2 MUTATED OR51B2 WILD-TYPE
  M0             10              155
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR51B2 MUTATED    7  1      1
  OR51B2 WILD-TYPE 90 37     40
D33V9, multiclass
        clus
vv       OR51B2 MUTATED OR51B2 WILD-TYPE
  I                   7               90
  II                  1               37
  III+IV              1               40
D33V10, binary
                  cls
clus                 0   1
  OR51B2 MUTATED     0  10
  OR51B2 WILD-TYPE   4 164
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR51B2 MUTATED      0   10
  OR51B2 WILD-TYPE    4  164
     clus
vv    OR51B2 MUTATED OR51B2 WILD-TYPE
  NO               0                4
  YES             10              164
D33V11, continuous
D33V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR51B2 MUTATED                                             6
  OR51B2 WILD-TYPE                                          88
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR51B2 MUTATED                                        2              2
  OR51B2 WILD-TYPE                                     41             26
                  vv
clus               LIFELONG NON-SMOKER
  OR51B2 MUTATED                     0
  OR51B2 WILD-TYPE                   8
D33V13, multiclass
                                             clus
vv                                            OR51B2 MUTATED OR51B2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D33V14, continuous

Clustering(34) Variable = SLC13A1 MUTATION ANALYSIS
D34V1, survival
                   sevent
clus2                0  1
  SLC13A1 MUTATED    8  4
  SLC13A1 WILD-TYPE 89 66
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
               12               155 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
                4                66 
$`SLC13A1 MUTATED`
TCGA-18-3415 TCGA-18-4083 TCGA-22-5471 TCGA-39-5027 TCGA-39-5039 TCGA-43-6647 
       59.51         6.15        31.69        60.76        17.88         6.02 
TCGA-60-2698 TCGA-60-2719 TCGA-60-2726 TCGA-66-2742 TCGA-66-2767 TCGA-66-2787 
       10.22        30.61        11.77        21.07         2.01        40.01 

$`SLC13A1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        11.77        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 
       18.08        11.57        18.84         8.48         7.00         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        2.07        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       35.34         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       23.64        16.96        43.10         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
             2.01              0.10 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
            60.76            173.79 
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
           19.475            16.960 
[1] "2.0 - 60.8 (19.5)"  "0.1 - 173.8 (17.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE"   "SLC13A1 MUTATED" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC13A1 MUTATED" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
[1] "hr=" "1.2"
D34V2, continuous
D34V3, binary
                   cls
clus                  0   1
  SLC13A1 MUTATED     2  10
  SLC13A1 WILD-TYPE  45 121
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC13A1 MUTATED      2   10
  SLC13A1 WILD-TYPE   45  121
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  FEMALE               2                45
  MALE                10               121
D34V4, continuous
[1] "Remove cluster labels:" "SLC13A1 MUTATED"       
clus
  SLC13A1 MUTATED SLC13A1 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-22-5492        TCGA-34-5234        TCGA-37-4133        TCGA-37-4135 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-37-5819        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"SLC13A1 WILD-TYPE" "SLC13A1 WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SLC13A1 MUTATED                                       0
  SLC13A1 WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SLC13A1 MUTATED                                        0
  SLC13A1 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLC13A1 MUTATED                                                            12
  SLC13A1 WILD-TYPE                                                         160
D34V5, multiclass
                                                             clus
vv                                                            SLC13A1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              12
                                                             clus
vv                                                            SLC13A1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               160
                   vv
clus                 T1  T2  T3  T4
  SLC13A1 MUTATED     2  10   0   0
  SLC13A1 WILD-TYPE  34 106  14  12
D34V6, multiclass
    clus
vv   SLC13A1 MUTATED SLC13A1 WILD-TYPE
  T1               2                34
  T2              10               106
  T3               0                14
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  SLC13A1 MUTATED     6   5   0   1
  SLC13A1 WILD-TYPE 111  34  17   4
D34V7, multiclass
    clus
vv   SLC13A1 MUTATED SLC13A1 WILD-TYPE
  N0               6               111
  N1               5                34
  N2               0                17
  N3               1                 4
                   vv
clus                 M0  M1  MX
  SLC13A1 MUTATED    10   1   1
  SLC13A1 WILD-TYPE 155   2   5
D34V8, multiclass
    clus
vv   SLC13A1 MUTATED SLC13A1 WILD-TYPE
  M0              10               155
  M1               1                 2
  MX               1                 5
                   vv
clus                 I II III+IV
  SLC13A1 MUTATED    5  5      2
  SLC13A1 WILD-TYPE 92 33     39
D34V9, multiclass
        clus
vv       SLC13A1 MUTATED SLC13A1 WILD-TYPE
  I                    5                92
  II                   5                33
  III+IV               2                39
D34V10, binary
                   cls
clus                  0   1
  SLC13A1 MUTATED     1  11
  SLC13A1 WILD-TYPE   3 163
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC13A1 MUTATED      1   11
  SLC13A1 WILD-TYPE    3  163
     clus
vv    SLC13A1 MUTATED SLC13A1 WILD-TYPE
  NO                1                 3
  YES              11               163
D34V11, continuous
D34V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SLC13A1 MUTATED                                             7
  SLC13A1 WILD-TYPE                                          87
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SLC13A1 MUTATED                                        4              1
  SLC13A1 WILD-TYPE                                     39             27
                   vv
clus                LIFELONG NON-SMOKER
  SLC13A1 MUTATED                     0
  SLC13A1 WILD-TYPE                   8
D34V13, multiclass
                                             clus
vv                                            SLC13A1 MUTATED SLC13A1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                39
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D34V14, continuous

Clustering(35) Variable = TGIF2LX MUTATION ANALYSIS
D35V1, survival
                   sevent
clus2                0  1
  TGIF2LX MUTATED    5  4
  TGIF2LX WILD-TYPE 92 66
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                9               158 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
                4                66 
$`TGIF2LX MUTATED`
TCGA-21-5786 TCGA-22-1016 TCGA-22-4601 TCGA-22-4613 TCGA-22-5471 TCGA-22-5480 
       21.57        27.02        34.75        11.77        31.69        71.34 
TCGA-34-5231 TCGA-37-3789 TCGA-60-2720 
       50.24         0.43         3.16 

$`TGIF2LX WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 
       14.10        20.45        35.08        24.13        38.17        13.12 
TCGA-22-4607 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       19.30        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 
       14.07        19.76         2.63        61.61        32.84        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
             0.43              0.10 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
            71.34            173.79 
  TGIF2LX MUTATED TGIF2LX WILD-TYPE 
            27.02             16.78 
[1] "0.4 - 71.3 (27.0)"  "0.1 - 173.8 (16.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "TGIF2LX MUTATED"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "TGIF2LX MUTATED"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "TGIF2LX MUTATED"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
  "TGIF2LX MUTATED" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE"   "TGIF2LX MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" "TGIF2LX WILD-TYPE" 
[1] "hr=" "1.1"
D35V2, continuous
D35V3, binary
                   cls
clus                  0   1
  TGIF2LX MUTATED     4   5
  TGIF2LX WILD-TYPE  43 126
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TGIF2LX MUTATED      4    5
  TGIF2LX WILD-TYPE   43  126
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  FEMALE               4                43
  MALE                 5               126
D35V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TGIF2LX MUTATED                                       0
  TGIF2LX WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TGIF2LX MUTATED                                        0
  TGIF2LX WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TGIF2LX MUTATED                                                             9
  TGIF2LX WILD-TYPE                                                         163
D35V5, multiclass
                                                             clus
vv                                                            TGIF2LX MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               9
                                                             clus
vv                                                            TGIF2LX WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               163
                   vv
clus                 T1  T2  T3  T4
  TGIF2LX MUTATED     3   5   0   1
  TGIF2LX WILD-TYPE  33 111  14  11
D35V6, multiclass
    clus
vv   TGIF2LX MUTATED TGIF2LX WILD-TYPE
  T1               3                33
  T2               5               111
  T3               0                14
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  TGIF2LX MUTATED     9   0   0   0
  TGIF2LX WILD-TYPE 108  39  17   5
D35V7, multiclass
    clus
vv   TGIF2LX MUTATED TGIF2LX WILD-TYPE
  N0               9               108
  N1               0                39
  N2               0                17
  N3               0                 5
                   vv
clus                 M0  M1  MX
  TGIF2LX MUTATED     8   0   0
  TGIF2LX WILD-TYPE 157   3   6
D35V8, multiclass
    clus
vv   TGIF2LX MUTATED TGIF2LX WILD-TYPE
  M0               8               157
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  TGIF2LX MUTATED    8  0      1
  TGIF2LX WILD-TYPE 89 38     40
D35V9, multiclass
        clus
vv       TGIF2LX MUTATED TGIF2LX WILD-TYPE
  I                    8                89
  II                   0                38
  III+IV               1                40
D35V10, binary
                   cls
clus                  0   1
  TGIF2LX MUTATED     1   8
  TGIF2LX WILD-TYPE   3 166
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TGIF2LX MUTATED      1    8
  TGIF2LX WILD-TYPE    3  166
     clus
vv    TGIF2LX MUTATED TGIF2LX WILD-TYPE
  NO                1                 3
  YES               8               166
D35V11, continuous
D35V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TGIF2LX MUTATED                                             3
  TGIF2LX WILD-TYPE                                          91
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TGIF2LX MUTATED                                        2              2
  TGIF2LX WILD-TYPE                                     41             26
                   vv
clus                LIFELONG NON-SMOKER
  TGIF2LX MUTATED                     2
  TGIF2LX WILD-TYPE                   6
D35V13, multiclass
                                             clus
vv                                            TGIF2LX MUTATED TGIF2LX WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       2                 6
D35V14, continuous

Clustering(36) Variable = ASCL4 MUTATION ANALYSIS
D36V1, survival
                 sevent
clus2              0  1
  ASCL4 MUTATED    2  3
  ASCL4 WILD-TYPE 95 67
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              5             162 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              3              67 
$`ASCL4 MUTATED`
TCGA-22-4613 TCGA-33-4566 TCGA-37-4141 TCGA-66-2755 TCGA-66-2791 
       11.77       173.79         0.39         0.92         5.03 

$`ASCL4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 
        1.94        25.97        40.01        22.98         4.04        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  ASCL4 MUTATED ASCL4 WILD-TYPE 
           0.39            0.10 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
         173.79          141.34 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
           5.03           18.46 
[1] "0.4 - 173.8 (5.0)"  "0.1 - 141.3 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ASCL4 WILD-TYPE"   "ASCL4 MUTATED" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE"   "ASCL4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
[1] "hr=" "1"  
D36V2, continuous
D36V3, binary
                 cls
clus                0   1
  ASCL4 MUTATED     2   4
  ASCL4 WILD-TYPE  45 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL4 MUTATED      2    4
  ASCL4 WILD-TYPE   45  127
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  FEMALE             2              45
  MALE               4             127
D36V4, continuous
[1] "Remove cluster labels:" "ASCL4 MUTATED"         
clus
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" "ASCL4 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ASCL4 MUTATED                                       0
  ASCL4 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ASCL4 MUTATED                                        0
  ASCL4 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ASCL4 MUTATED                                                             6
  ASCL4 WILD-TYPE                                                         166
D36V5, multiclass
                                                             clus
vv                                                            ASCL4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            ASCL4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  ASCL4 MUTATED     2   4   0   0
  ASCL4 WILD-TYPE  34 112  14  12
D36V6, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  T1             2              34
  T2             4             112
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  ASCL4 MUTATED     5   0   0   1
  ASCL4 WILD-TYPE 112  39  17   4
D36V7, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  N0             5             112
  N1             0              39
  N2             0              17
  N3             1               4
                 vv
clus               M0  M1  MX
  ASCL4 MUTATED     6   0   0
  ASCL4 WILD-TYPE 159   3   6
D36V8, multiclass
    clus
vv   ASCL4 MUTATED ASCL4 WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  ASCL4 MUTATED    5  0      1
  ASCL4 WILD-TYPE 92 38     40
D36V9, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  I                  5              92
  II                 0              38
  III+IV             1              40
D36V10, binary
                 cls
clus                0   1
  ASCL4 MUTATED     0   6
  ASCL4 WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ASCL4 MUTATED      0    6
  ASCL4 WILD-TYPE    4  168
     clus
vv    ASCL4 MUTATED ASCL4 WILD-TYPE
  NO              0               4
  YES             6             168
D36V11, continuous
D36V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ASCL4 MUTATED                                             2
  ASCL4 WILD-TYPE                                          92
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ASCL4 MUTATED                                        2              1
  ASCL4 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  ASCL4 MUTATED                     1
  ASCL4 WILD-TYPE                   7
D36V13, multiclass
                                             clus
vv                                            ASCL4 MUTATED ASCL4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D36V14, continuous

Clustering(37) Variable = REG3G MUTATION ANALYSIS
D37V1, survival
                 sevent
clus2              0  1
  REG3G MUTATED    8  0
  REG3G WILD-TYPE 89 70
  REG3G MUTATED REG3G WILD-TYPE 
              8             159 
  REG3G MUTATED REG3G WILD-TYPE 
              0              70 
$`REG3G MUTATED`
TCGA-18-5592 TCGA-22-5471 TCGA-34-5231 TCGA-37-4141 TCGA-37-5819 TCGA-43-6143 
        3.02        31.69        50.24         0.39         3.39         7.00 
TCGA-66-2792 TCGA-85-6561 
       30.02         0.79 

$`REG3G WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        32.84        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-39-5016 TCGA-39-5019 
        3.95         0.43         7.82         6.81        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         8.48         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04         5.03        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  REG3G MUTATED REG3G WILD-TYPE 
           0.39            0.10 
  REG3G MUTATED REG3G WILD-TYPE 
          50.24          173.79 
  REG3G MUTATED REG3G WILD-TYPE 
          5.195          18.080 
[1] "0.4 - 50.2 (5.2)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG3G WILD-TYPE"   "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
  "REG3G MUTATED" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG3G WILD-TYPE" "REG3G WILD-TYPE"   "REG3G MUTATED" 
[1] "hr="     "2.6e+07"
D37V2, continuous
D37V3, binary
                 cls
clus                0   1
  REG3G MUTATED     1   7
  REG3G WILD-TYPE  46 124
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3G MUTATED      1    7
  REG3G WILD-TYPE   46  124
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  FEMALE             1              46
  MALE               7             124
D37V4, continuous
[1] "Remove cluster labels:" "REG3G MUTATED"         
clus
  REG3G MUTATED REG3G WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-4135 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"REG3G WILD-TYPE" "REG3G WILD-TYPE" "REG3G WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  REG3G MUTATED                                       1
  REG3G WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  REG3G MUTATED                                        0
  REG3G WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG3G MUTATED                                                             7
  REG3G WILD-TYPE                                                         165
D37V5, multiclass
                                                             clus
vv                                                            REG3G MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            REG3G WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  REG3G MUTATED     2   5   1   0
  REG3G WILD-TYPE  34 111  13  12
D37V6, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  T1             2              34
  T2             5             111
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  REG3G MUTATED     6   1   1   0
  REG3G WILD-TYPE 111  38  16   5
D37V7, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  REG3G MUTATED     8   0   0
  REG3G WILD-TYPE 157   3   6
D37V8, multiclass
    clus
vv   REG3G MUTATED REG3G WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  REG3G MUTATED    4  3      1
  REG3G WILD-TYPE 93 35     40
D37V9, multiclass
        clus
vv       REG3G MUTATED REG3G WILD-TYPE
  I                  4              93
  II                 3              35
  III+IV             1              40
D37V10, binary
                 cls
clus                0   1
  REG3G MUTATED     1   7
  REG3G WILD-TYPE   3 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG3G MUTATED      1    7
  REG3G WILD-TYPE    3  167
     clus
vv    REG3G MUTATED REG3G WILD-TYPE
  NO              1               3
  YES             7             167
D37V11, continuous
D37V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  REG3G MUTATED                                             4
  REG3G WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  REG3G MUTATED                                        2              0
  REG3G WILD-TYPE                                     41             28
                 vv
clus              LIFELONG NON-SMOKER
  REG3G MUTATED                     2
  REG3G WILD-TYPE                   6
D37V13, multiclass
                                             clus
vv                                            REG3G MUTATED REG3G WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     2               6
D37V14, continuous

Clustering(38) Variable = CBLN4 MUTATION ANALYSIS
D38V1, survival
                 sevent
clus2              0  1
  CBLN4 MUTATED    2  3
  CBLN4 WILD-TYPE 95 67
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              5             162 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              3              67 
$`CBLN4 MUTATED`
TCGA-18-3411 TCGA-21-5782 TCGA-39-5027 TCGA-39-5028 TCGA-60-2715 
       46.52        31.63        60.76         1.71        35.34 

$`CBLN4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       29.19         9.01        47.87        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  CBLN4 MUTATED CBLN4 WILD-TYPE 
           1.71            0.10 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
          60.76          173.79 
  CBLN4 MUTATED CBLN4 WILD-TYPE 
          35.34           16.78 
[1] "1.7 - 60.8 (35.3)"  "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE"   "CBLN4 MUTATED"   "CBLN4 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE"   "CBLN4 MUTATED"   "CBLN4 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE"   "CBLN4 MUTATED"   "CBLN4 MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CBLN4 WILD-TYPE"   "CBLN4 MUTATED" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
[1] "hr=" "1.1"
D38V2, continuous
D38V3, binary
                 cls
clus                0   1
  CBLN4 MUTATED     2   3
  CBLN4 WILD-TYPE  45 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBLN4 MUTATED      2    3
  CBLN4 WILD-TYPE   45  128
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  FEMALE             2              45
  MALE               3             128
D38V4, continuous
[1] "Remove cluster labels:" "CBLN4 MUTATED"         
clus
  CBLN4 MUTATED CBLN4 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2725      TCGA-60-2726 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"CBLN4 WILD-TYPE" "CBLN4 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CBLN4 MUTATED                                       0
  CBLN4 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CBLN4 MUTATED                                        0
  CBLN4 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CBLN4 MUTATED                                                             5
  CBLN4 WILD-TYPE                                                         167
D38V5, multiclass
                                                             clus
vv                                                            CBLN4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             5
                                                             clus
vv                                                            CBLN4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             167
                 vv
clus               T1  T2  T3  T4
  CBLN4 MUTATED     1   3   0   1
  CBLN4 WILD-TYPE  35 113  14  11
D38V6, multiclass
    clus
vv   CBLN4 MUTATED CBLN4 WILD-TYPE
  T1             1              35
  T2             3             113
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  CBLN4 MUTATED     3   1   1   0
  CBLN4 WILD-TYPE 114  38  16   5
D38V7, multiclass
    clus
vv   CBLN4 MUTATED CBLN4 WILD-TYPE
  N0             3             114
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  CBLN4 MUTATED     5   0   0
  CBLN4 WILD-TYPE 160   3   6
D38V8, multiclass
    clus
vv   CBLN4 MUTATED CBLN4 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  CBLN4 MUTATED    3  0      2
  CBLN4 WILD-TYPE 94 38     39
D38V9, multiclass
        clus
vv       CBLN4 MUTATED CBLN4 WILD-TYPE
  I                  3              94
  II                 0              38
  III+IV             2              39
D38V10, binary
                 cls
clus                0   1
  CBLN4 MUTATED     0   5
  CBLN4 WILD-TYPE   4 169
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CBLN4 MUTATED      0    5
  CBLN4 WILD-TYPE    4  169
     clus
vv    CBLN4 MUTATED CBLN4 WILD-TYPE
  NO              0               4
  YES             5             169
D38V11, continuous
D38V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CBLN4 MUTATED                                             3
  CBLN4 WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CBLN4 MUTATED                                        1              1
  CBLN4 WILD-TYPE                                     42             27
                 vv
clus              LIFELONG NON-SMOKER
  CBLN4 MUTATED                     0
  CBLN4 WILD-TYPE                   8
D38V13, multiclass
                                             clus
vv                                            CBLN4 MUTATED CBLN4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D38V14, continuous

Clustering(39) Variable = OR10G8 MUTATION ANALYSIS
D39V1, survival
                  sevent
clus2               0  1
  OR10G8 MUTATED    6  4
  OR10G8 WILD-TYPE 91 66
  OR10G8 MUTATED OR10G8 WILD-TYPE 
              10              157 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
               4               66 
$`OR10G8 MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-22-5473 TCGA-22-5485 TCGA-33-4566 TCGA-33-4583 
       79.46         4.80        63.52        30.08       173.79       141.34 
TCGA-43-3920 TCGA-43-6647 TCGA-60-2708 TCGA-85-6561 
       18.84         6.02        68.45         0.79 

$`OR10G8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        71.34        11.74        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       11.57         8.48         7.00         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 
        0.10         2.04         1.02        10.22        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 
        0.36 

  OR10G8 MUTATED OR10G8 WILD-TYPE 
            0.79             0.10 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
          173.79           115.59 
  OR10G8 MUTATED OR10G8 WILD-TYPE 
            46.8             16.6 
[1] "0.8 - 173.8 (46.8)" "0.1 - 115.6 (16.6)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10G8 WILD-TYPE"   "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
  "OR10G8 MUTATED" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10G8 WILD-TYPE" "OR10G8 WILD-TYPE"   "OR10G8 MUTATED" 
[1] "hr=" "2.8"
D39V2, continuous
D39V3, binary
                  cls
clus                 0   1
  OR10G8 MUTATED     3   7
  OR10G8 WILD-TYPE  44 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      3    7
  OR10G8 WILD-TYPE   44  124
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  FEMALE              3               44
  MALE                7              124
D39V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR10G8 MUTATED                                       1
  OR10G8 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR10G8 MUTATED                                        0
  OR10G8 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10G8 MUTATED                                                             9
  OR10G8 WILD-TYPE                                                         163
D39V5, multiclass
                                                             clus
vv                                                            OR10G8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            OR10G8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
                  vv
clus                T1  T2  T3  T4
  OR10G8 MUTATED     3   5   2   0
  OR10G8 WILD-TYPE  33 111  12  12
D39V6, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  T1              3               33
  T2              5              111
  T3              2               12
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR10G8 MUTATED     8   2   0   0
  OR10G8 WILD-TYPE 109  37  17   5
D39V7, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  N0              8              109
  N1              2               37
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  OR10G8 MUTATED     9   0   1
  OR10G8 WILD-TYPE 156   3   5
D39V8, multiclass
    clus
vv   OR10G8 MUTATED OR10G8 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  OR10G8 MUTATED    5  3      1
  OR10G8 WILD-TYPE 92 35     40
D39V9, multiclass
        clus
vv       OR10G8 MUTATED OR10G8 WILD-TYPE
  I                   5               92
  II                  3               35
  III+IV              1               40
D39V10, binary
                  cls
clus                 0   1
  OR10G8 MUTATED     0  10
  OR10G8 WILD-TYPE   4 164
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10G8 MUTATED      0   10
  OR10G8 WILD-TYPE    4  164
     clus
vv    OR10G8 MUTATED OR10G8 WILD-TYPE
  NO               0                4
  YES             10              164
D39V11, continuous
D39V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR10G8 MUTATED                                             5
  OR10G8 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR10G8 MUTATED                                        3              2
  OR10G8 WILD-TYPE                                     40             26
                  vv
clus               LIFELONG NON-SMOKER
  OR10G8 MUTATED                     0
  OR10G8 WILD-TYPE                   8
D39V13, multiclass
                                             clus
vv                                            OR10G8 MUTATED OR10G8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D39V14, continuous

Clustering(40) Variable = OR4M1 MUTATION ANALYSIS
D40V1, survival
                 sevent
clus2              0  1
  OR4M1 MUTATED    8  5
  OR4M1 WILD-TYPE 89 65
  OR4M1 MUTATED OR4M1 WILD-TYPE 
             13             154 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
              5              65 
$`OR4M1 MUTATED`
TCGA-18-3411 TCGA-18-3419 TCGA-21-5784 TCGA-21-5786 TCGA-22-4593 TCGA-34-5929 
       46.52         1.61        29.85        21.57        35.08         4.96 
TCGA-39-5027 TCGA-43-6143 TCGA-51-4080 TCGA-60-2724 TCGA-66-2744 TCGA-66-2782 
       60.76         7.00         0.39         1.22         0.99        12.00 
TCGA-66-2791 
        5.03 

$`OR4M1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5787 
       60.89        34.78        15.55         9.30        31.63        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 
       24.13        38.17        34.75        13.12        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10        22.78        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR4M1 MUTATED OR4M1 WILD-TYPE 
           0.39            0.10 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
          60.76          173.79 
  OR4M1 MUTATED OR4M1 WILD-TYPE 
           7.00           18.46 
[1] "0.4 - 60.8 (7.0)"   "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4M1 WILD-TYPE"   "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "OR4M1 MUTATED" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE"   "OR4M1 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
[1] "hr=" "1.4"
D40V2, continuous
D40V3, binary
                 cls
clus                0   1
  OR4M1 MUTATED     3  10
  OR4M1 WILD-TYPE  44 121
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M1 MUTATED      3   10
  OR4M1 WILD-TYPE   44  121
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  FEMALE             3              44
  MALE              10             121
D40V4, continuous
[1] "Remove cluster labels:" "OR4M1 MUTATED"         
clus
  OR4M1 MUTATED OR4M1 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4595 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR4M1 WILD-TYPE" "OR4M1 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR4M1 MUTATED                                       2
  OR4M1 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR4M1 MUTATED                                        0
  OR4M1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4M1 MUTATED                                                            11
  OR4M1 WILD-TYPE                                                         161
D40V5, multiclass
                                                             clus
vv                                                            OR4M1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            OR4M1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
                 vv
clus               T1  T2  T3  T4
  OR4M1 MUTATED     0  10   2   1
  OR4M1 WILD-TYPE  36 106  12  11
D40V6, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  T1             0              36
  T2            10             106
  T3             2              12
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR4M1 MUTATED     7   4   1   1
  OR4M1 WILD-TYPE 110  35  16   4
D40V7, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  N0             7             110
  N1             4              35
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  OR4M1 MUTATED    12   0   0
  OR4M1 WILD-TYPE 153   3   6
D40V8, multiclass
    clus
vv   OR4M1 MUTATED OR4M1 WILD-TYPE
  M0            12             153
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR4M1 MUTATED    5  4      4
  OR4M1 WILD-TYPE 92 34     37
D40V9, multiclass
        clus
vv       OR4M1 MUTATED OR4M1 WILD-TYPE
  I                  5              92
  II                 4              34
  III+IV             4              37
D40V10, binary
                 cls
clus                0   1
  OR4M1 MUTATED     0  13
  OR4M1 WILD-TYPE   4 161
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4M1 MUTATED      0   13
  OR4M1 WILD-TYPE    4  161
     clus
vv    OR4M1 MUTATED OR4M1 WILD-TYPE
  NO              0               4
  YES            13             161
D40V11, continuous
D40V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4M1 MUTATED                                             9
  OR4M1 WILD-TYPE                                          85
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4M1 MUTATED                                        1              3
  OR4M1 WILD-TYPE                                     42             25
                 vv
clus              LIFELONG NON-SMOKER
  OR4M1 MUTATED                     0
  OR4M1 WILD-TYPE                   8
D40V13, multiclass
                                             clus
vv                                            OR4M1 MUTATED OR4M1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             9              85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0               8
D40V14, continuous

Clustering(41) Variable = OR2T2 MUTATION ANALYSIS
D41V1, survival
                 sevent
clus2              0  1
  OR2T2 MUTATED    4  2
  OR2T2 WILD-TYPE 93 68
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              6             161 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              2              68 
$`OR2T2 MUTATED`
TCGA-18-4083 TCGA-33-4566 TCGA-37-5819 TCGA-39-5027 TCGA-39-5035 TCGA-66-2770 
        6.15       173.79         3.39        60.76        15.58        23.01 

$`OR2T2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.35        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  OR2T2 MUTATED OR2T2 WILD-TYPE 
           3.39            0.10 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
         173.79          141.34 
  OR2T2 MUTATED OR2T2 WILD-TYPE 
         19.295          17.880 
[1] "3.4 - 173.8 (19.3)" "0.1 - 141.3 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE"   "OR2T2 MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T2 WILD-TYPE"   "OR2T2 MUTATED" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
[1] "hr=" "3.5"
D41V2, continuous
D41V3, binary
                 cls
clus                0   1
  OR2T2 MUTATED     1   6
  OR2T2 WILD-TYPE  46 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T2 MUTATED      1    6
  OR2T2 WILD-TYPE   46  125
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  FEMALE             1              46
  MALE               6             125
D41V4, continuous
[1] "Remove cluster labels:" "OR2T2 MUTATED"         
clus
  OR2T2 MUTATED OR2T2 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-4135 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" "OR2T2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2T2 MUTATED                                       0
  OR2T2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2T2 MUTATED                                        0
  OR2T2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T2 MUTATED                                                             7
  OR2T2 WILD-TYPE                                                         165
D41V5, multiclass
                                                             clus
vv                                                            OR2T2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR2T2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  OR2T2 MUTATED     1   5   0   1
  OR2T2 WILD-TYPE  35 111  14  11
D41V6, multiclass
    clus
vv   OR2T2 MUTATED OR2T2 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR2T2 MUTATED     5   1   1   0
  OR2T2 WILD-TYPE 112  38  16   5
D41V7, multiclass
    clus
vv   OR2T2 MUTATED OR2T2 WILD-TYPE
  N0             5             112
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2T2 MUTATED     7   0   0
  OR2T2 WILD-TYPE 158   3   6
D41V8, multiclass
    clus
vv   OR2T2 MUTATED OR2T2 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR2T2 MUTATED    4  2      1
  OR2T2 WILD-TYPE 93 36     40
D41V9, multiclass
        clus
vv       OR2T2 MUTATED OR2T2 WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             1              40
D41V10, binary
                 cls
clus                0   1
  OR2T2 MUTATED     0   7
  OR2T2 WILD-TYPE   4 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T2 MUTATED      0    7
  OR2T2 WILD-TYPE    4  167
     clus
vv    OR2T2 MUTATED OR2T2 WILD-TYPE
  NO              0               4
  YES             7             167
D41V11, continuous
D41V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T2 MUTATED                                             3
  OR2T2 WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T2 MUTATED                                        2              2
  OR2T2 WILD-TYPE                                     41             26
                 vv
clus              LIFELONG NON-SMOKER
  OR2T2 MUTATED                     0
  OR2T2 WILD-TYPE                   8
D41V13, multiclass
                                             clus
vv                                            OR2T2 MUTATED OR2T2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D41V14, continuous

Clustering(42) Variable = OR2T8 MUTATION ANALYSIS
D42V1, survival
                 sevent
clus2              0  1
  OR2T8 MUTATED    2  6
  OR2T8 WILD-TYPE 95 64
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              8             159 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              6              64 
$`OR2T8 MUTATED`
TCGA-18-3412 TCGA-18-4086 TCGA-21-5782 TCGA-22-4599 TCGA-33-4538 TCGA-34-2600 
       11.34         2.79        31.63        38.17        97.94        61.61 
TCGA-37-5819 TCGA-60-2722 
        3.39        24.10 

$`OR2T8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        24.13        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       16.60        82.98       114.05        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 
      141.34        14.07        19.76         2.63        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         0.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       35.34        30.61         3.16        26.07        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2T8 MUTATED OR2T8 WILD-TYPE 
           2.79            0.10 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
          97.94          173.79 
  OR2T8 MUTATED OR2T8 WILD-TYPE 
         27.865          16.960 
[1] "2.8 - 97.9 (27.9)"  "0.1 - 173.8 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE"   "OR2T8 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T8 WILD-TYPE"   "OR2T8 MUTATED" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
[1] "hr=" "1.5"
D42V2, continuous
D42V3, binary
                 cls
clus                0   1
  OR2T8 MUTATED     3   5
  OR2T8 WILD-TYPE  44 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      3    5
  OR2T8 WILD-TYPE   44  126
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D42V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2T8 MUTATED                                       0
  OR2T8 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2T8 MUTATED                                        0
  OR2T8 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T8 MUTATED                                                             8
  OR2T8 WILD-TYPE                                                         164
D42V5, multiclass
                                                             clus
vv                                                            OR2T8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            OR2T8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  OR2T8 MUTATED     1   7   0   0
  OR2T8 WILD-TYPE  35 109  14  12
D42V6, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  T1             1              35
  T2             7             109
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR2T8 MUTATED     5   1   2   0
  OR2T8 WILD-TYPE 112  38  15   5
D42V7, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  N0             5             112
  N1             1              38
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2T8 MUTATED     8   0   0
  OR2T8 WILD-TYPE 157   3   6
D42V8, multiclass
    clus
vv   OR2T8 MUTATED OR2T8 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR2T8 MUTATED    5  1      2
  OR2T8 WILD-TYPE 92 37     39
D42V9, multiclass
        clus
vv       OR2T8 MUTATED OR2T8 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             2              39
D42V10, binary
                 cls
clus                0   1
  OR2T8 MUTATED     0   8
  OR2T8 WILD-TYPE   4 166
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T8 MUTATED      0    8
  OR2T8 WILD-TYPE    4  166
     clus
vv    OR2T8 MUTATED OR2T8 WILD-TYPE
  NO              0               4
  YES             8             166
D42V11, continuous
D42V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T8 MUTATED                                             4
  OR2T8 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T8 MUTATED                                        2              2
  OR2T8 WILD-TYPE                                     41             26
                 vv
clus              LIFELONG NON-SMOKER
  OR2T8 MUTATED                     0
  OR2T8 WILD-TYPE                   8
D42V13, multiclass
                                             clus
vv                                            OR2T8 MUTATED OR2T8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D42V14, continuous
[1] "Remove cluster labels:" "OR2T8 MUTATED"         
clus
  OR2T8 MUTATED OR2T8 WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-21-5787      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4593 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-4607      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5480      TCGA-22-5482      TCGA-22-5492 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4582      TCGA-33-4583 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-33-4586      TCGA-34-5240      TCGA-34-5241      TCGA-37-4133 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-37-4135      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-2578      TCGA-43-3394      TCGA-43-3920 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-43-6143      TCGA-43-6647      TCGA-43-6770      TCGA-43-6771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-56-1622      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2715 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2719      TCGA-60-2720      TCGA-60-2721      TCGA-60-2723 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-6202 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2786 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" "OR2T8 WILD-TYPE" 

Clustering(43) Variable = SPANXN1 MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                0  1
  SPANXN1 MUTATED    5  0
  SPANXN1 WILD-TYPE 92 70
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                5               162 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                0                70 
$`SPANXN1 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-33-4532 TCGA-34-5232 TCGA-60-2711 
       79.46       115.59        82.98        51.78        29.19 

$`SPANXN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        50.24        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
            29.19              0.10 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
           115.59            173.79 
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
            79.46             16.09 
[1] "29.2 - 115.6 (79.5)" "0.1 - 173.8 (16.1)" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE"   "SPANXN1 MUTATED" "SPANXN1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D43V2, continuous
D43V3, binary
                   cls
clus                  0   1
  SPANXN1 MUTATED     3   2
  SPANXN1 WILD-TYPE  44 129
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN1 MUTATED      3    2
  SPANXN1 WILD-TYPE   44  129
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  FEMALE               3                44
  MALE                 2               129
D43V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SPANXN1 MUTATED                                       1
  SPANXN1 WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SPANXN1 MUTATED                                        0
  SPANXN1 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPANXN1 MUTATED                                                             4
  SPANXN1 WILD-TYPE                                                         168
D43V5, multiclass
                                                             clus
vv                                                            SPANXN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               4
                                                             clus
vv                                                            SPANXN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               168
                   vv
clus                 T1  T2  T3  T4
  SPANXN1 MUTATED     2   2   1   0
  SPANXN1 WILD-TYPE  34 114  13  12
D43V6, multiclass
    clus
vv   SPANXN1 MUTATED SPANXN1 WILD-TYPE
  T1               2                34
  T2               2               114
  T3               1                13
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  SPANXN1 MUTATED     4   1   0   0
  SPANXN1 WILD-TYPE 113  38  17   5
D43V7, multiclass
    clus
vv   SPANXN1 MUTATED SPANXN1 WILD-TYPE
  N0               4               113
  N1               1                38
  N2               0                17
  N3               0                 5
                   vv
clus                 M0  M1  MX
  SPANXN1 MUTATED     5   0   0
  SPANXN1 WILD-TYPE 160   3   6
D43V8, multiclass
    clus
vv   SPANXN1 MUTATED SPANXN1 WILD-TYPE
  M0               5               160
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  SPANXN1 MUTATED    2  1      1
  SPANXN1 WILD-TYPE 95 37     40
D43V9, multiclass
        clus
vv       SPANXN1 MUTATED SPANXN1 WILD-TYPE
  I                    2                95
  II                   1                37
  III+IV               1                40
D43V10, binary
                   cls
clus                  0   1
  SPANXN1 MUTATED     0   5
  SPANXN1 WILD-TYPE   4 169
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SPANXN1 MUTATED      0    5
  SPANXN1 WILD-TYPE    4  169
     clus
vv    SPANXN1 MUTATED SPANXN1 WILD-TYPE
  NO                0                 4
  YES               5               169
D43V11, continuous
D43V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SPANXN1 MUTATED                                             2
  SPANXN1 WILD-TYPE                                          92
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SPANXN1 MUTATED                                        1              1
  SPANXN1 WILD-TYPE                                     42             27
                   vv
clus                LIFELONG NON-SMOKER
  SPANXN1 MUTATED                     0
  SPANXN1 WILD-TYPE                   8
D43V13, multiclass
                                             clus
vv                                            SPANXN1 MUTATED SPANXN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               2                92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D43V14, continuous
[1] "Remove cluster labels:" "SPANXN1 MUTATED"       
clus
  SPANXN1 MUTATED SPANXN1 WILD-TYPE 
                1               104 
       TCGA-18-3406        TCGA-18-3417        TCGA-21-1078        TCGA-21-5782 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-21-5786        TCGA-21-5787        TCGA-22-0944        TCGA-22-1002 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-4591 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4607        TCGA-22-4613        TCGA-22-5472 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5473        TCGA-22-5474        TCGA-22-5480        TCGA-22-5482 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4533        TCGA-33-4547        TCGA-33-4582 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-33-4583        TCGA-33-4586        TCGA-34-5240        TCGA-34-5241 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-37-4133        TCGA-37-4135        TCGA-37-5819        TCGA-39-5021 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-6143        TCGA-43-6647 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-43-6770        TCGA-43-6771        TCGA-56-1622        TCGA-56-5898 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-56-6545        TCGA-56-6546        TCGA-60-2707        TCGA-60-2708 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2712        TCGA-60-2713 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-63-6202        TCGA-66-2727        TCGA-66-2734        TCGA-66-2742 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2744        TCGA-66-2754        TCGA-66-2755        TCGA-66-2756 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2757        TCGA-66-2758        TCGA-66-2759        TCGA-66-2763 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2765        TCGA-66-2766        TCGA-66-2767        TCGA-66-2770 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2771        TCGA-66-2773        TCGA-66-2777        TCGA-66-2778 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2780        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2786        TCGA-66-2787        TCGA-66-2788        TCGA-66-2789 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2791        TCGA-66-2792        TCGA-66-2793        TCGA-66-2794 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 
       TCGA-66-2795        TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" "SPANXN1 WILD-TYPE" 

Clustering(44) Variable = C20ORF26 MUTATION ANALYSIS
D44V1, survival
                    sevent
clus2                 0  1
  C20ORF26 MUTATED   12  6
  C20ORF26 WILD-TYPE 85 64
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                18                149 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
                 6                 64 
$`C20ORF26 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-18-3421 TCGA-21-1070 TCGA-22-4591 TCGA-22-4595 
       79.46        28.34        43.76       115.59        20.45        24.13 
TCGA-22-5478 TCGA-22-5489 TCGA-39-5019 TCGA-39-5021 TCGA-43-2578 TCGA-46-3768 
        0.79        62.86        44.71        68.58        18.08         9.96 
TCGA-60-2719 TCGA-66-2754 TCGA-66-2758 TCGA-66-2766 TCGA-66-2785 TCGA-85-6560 
       30.61         2.01        20.98         1.02         1.94         0.36 

$`C20ORF26 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 
       13.02        59.51        24.92         1.61         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
       90.51         3.02        27.16        46.88        60.89        34.78 
TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
       15.55         9.30        31.63        29.85        21.57        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 
        7.33         4.31         1.74        14.10        27.02        35.08 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 
       64.90        63.52        14.60        44.22        71.34        11.74 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
        3.39        74.07        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.79         5.42         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 
        0.99         0.92         0.99         0.99        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.79 

  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
              0.36               0.10 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
            115.59             173.79 
  C20ORF26 MUTATED C20ORF26 WILD-TYPE 
            22.555             15.580 
[1] "0.4 - 115.6 (22.6)" "0.1 - 173.8 (15.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED"   "C20ORF26 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED"   "C20ORF26 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1076 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-1077         TCGA-21-1078         TCGA-21-1081 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5784         TCGA-21-5786 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-21-5787         TCGA-22-0944         TCGA-22-1002 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-1011         TCGA-22-1012         TCGA-22-1016 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4595 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-22-5471 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5480 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5485         TCGA-22-5489 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-22-5491         TCGA-22-5492         TCGA-33-4532 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4583 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-33-4586         TCGA-33-6737         TCGA-34-2596 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2608         TCGA-34-5231 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5240         TCGA-34-5241 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-34-5927         TCGA-34-5928         TCGA-34-5929 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-4133 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5019         TCGA-39-5021 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED"   "C20ORF26 MUTATED" 
        TCGA-39-5022         TCGA-39-5024         TCGA-39-5027 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5028         TCGA-39-5029         TCGA-39-5030 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5031         TCGA-39-5035         TCGA-39-5036 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-39-5037         TCGA-39-5039         TCGA-43-2578 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-43-3394         TCGA-43-3920         TCGA-43-5668 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-43-6771         TCGA-46-3768         TCGA-46-6025 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-46-6026         TCGA-51-4079         TCGA-51-4080 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-51-4081         TCGA-56-1622         TCGA-56-5897 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-60-2698 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2707         TCGA-60-2708         TCGA-60-2709 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2715         TCGA-60-2719 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-60-2726         TCGA-66-2727         TCGA-66-2734 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2754 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2770         TCGA-66-2771 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2773         TCGA-66-2777         TCGA-66-2778 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2780         TCGA-66-2781         TCGA-66-2782 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2786 
"C20ORF26 WILD-TYPE"   "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
        TCGA-66-2787         TCGA-66-2788         TCGA-66-2789 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" "C20ORF26 WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561 
  "C20ORF26 MUTATED" "C20ORF26 WILD-TYPE" 
[1] "hr=" "1.6"
D44V2, continuous
D44V3, binary
                    cls
clus                   0   1
  C20ORF26 MUTATED     3  17
  C20ORF26 WILD-TYPE  44 114
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C20ORF26 MUTATED      3   17
  C20ORF26 WILD-TYPE   44  114
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  FEMALE                3                 44
  MALE                 17                114
D44V4, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  C20ORF26 MUTATED                                       1
  C20ORF26 WILD-TYPE                                     4
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  C20ORF26 MUTATED                                        0
  C20ORF26 WILD-TYPE                                      1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  C20ORF26 MUTATED                                                            19
  C20ORF26 WILD-TYPE                                                         153
D44V5, multiclass
                                                             clus
vv                                                            C20ORF26 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               19
                                                             clus
vv                                                            C20ORF26 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                       1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                153
                    vv
clus                  T1  T2  T3  T4
  C20ORF26 MUTATED     4  11   4   1
  C20ORF26 WILD-TYPE  32 105  10  11
D44V6, multiclass
    clus
vv   C20ORF26 MUTATED C20ORF26 WILD-TYPE
  T1                4                 32
  T2               11                105
  T3                4                 10
  T4                1                 11
                    vv
clus                  N0  N1  N2  N3
  C20ORF26 MUTATED    13   3   4   0
  C20ORF26 WILD-TYPE 104  36  13   5
D44V7, multiclass
    clus
vv   C20ORF26 MUTATED C20ORF26 WILD-TYPE
  N0               13                104
  N1                3                 36
  N2                4                 13
  N3                0                  5
                    vv
clus                  M0  M1  MX
  C20ORF26 MUTATED    19   0   0
  C20ORF26 WILD-TYPE 146   3   6
D44V8, multiclass
    clus
vv   C20ORF26 MUTATED C20ORF26 WILD-TYPE
  M0               19                146
  M1                0                  3
  MX                0                  6
                    vv
clus                  I II III+IV
  C20ORF26 MUTATED    9  3      7
  C20ORF26 WILD-TYPE 88 35     34
D44V9, multiclass
        clus
vv       C20ORF26 MUTATED C20ORF26 WILD-TYPE
  I                     9                 88
  II                    3                 35
  III+IV                7                 34
D44V10, binary
                    cls
clus                   0   1
  C20ORF26 MUTATED     1  19
  C20ORF26 WILD-TYPE   3 155
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  C20ORF26 MUTATED      1   19
  C20ORF26 WILD-TYPE    3  155
     clus
vv    C20ORF26 MUTATED C20ORF26 WILD-TYPE
  NO                 1                  3
  YES               19                155
D44V11, continuous
D44V12, continuous
                    vv
clus                 CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  C20ORF26 MUTATED                                            13
  C20ORF26 WILD-TYPE                                          81
                    vv
clus                 CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  C20ORF26 MUTATED                                        5              2
  C20ORF26 WILD-TYPE                                     38             26
                    vv
clus                 LIFELONG NON-SMOKER
  C20ORF26 MUTATED                     0
  C20ORF26 WILD-TYPE                   8
D44V13, multiclass
                                             clus
vv                                            C20ORF26 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               13
  CURRENT REFORMED SMOKER FOR > 15 YEARS                     5
  CURRENT SMOKER                                             2
  LIFELONG NON-SMOKER                                        0
                                             clus
vv                                            C20ORF26 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 81
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      38
  CURRENT SMOKER                                              26
  LIFELONG NON-SMOKER                                          8
D44V14, continuous

Clustering(45) Variable = ZEB2 MUTATION ANALYSIS
D45V1, survival
                sevent
clus2             0  1
  ZEB2 MUTATED   10  4
  ZEB2 WILD-TYPE 87 66
  ZEB2 MUTATED ZEB2 WILD-TYPE 
            14            153 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
             4             66 
$`ZEB2 MUTATED`
TCGA-18-3421 TCGA-21-5786 TCGA-22-1016 TCGA-22-5473 TCGA-22-5489 TCGA-33-4583 
       43.76        21.57        27.02        63.52        62.86       141.34 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5031 TCGA-43-6771 TCGA-66-2771 TCGA-66-2778 
        3.39        74.07        27.35         5.42        19.00        19.00 
TCGA-66-2787 TCGA-66-2795 
       40.01         4.01 

$`ZEB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 
        0.79        71.34        11.74        30.08        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        6.81         0.39        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5036 
       60.76         1.71        24.33         1.94        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        7.00         6.02         2.79         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         2.01        23.01         3.02         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  ZEB2 MUTATED ZEB2 WILD-TYPE 
          3.39           0.10 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
        141.34         173.79 
  ZEB2 MUTATED ZEB2 WILD-TYPE 
        27.185         15.550 
[1] "3.4 - 141.3 (27.2)" "0.1 - 173.8 (15.6)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "ZEB2 MUTATED"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "ZEB2 MUTATED"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "ZEB2 MUTATED"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"ZEB2 WILD-TYPE"   "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "ZEB2 MUTATED" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE"   "ZEB2 MUTATED" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" "ZEB2 WILD-TYPE" 
[1] "hr=" "2.3"
D45V2, continuous
D45V3, binary
                cls
clus               0   1
  ZEB2 MUTATED     2  13
  ZEB2 WILD-TYPE  45 118
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED      2   13
  ZEB2 WILD-TYPE   45  118
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  FEMALE            2             45
  MALE             13            118
D45V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZEB2 MUTATED                                       1
  ZEB2 WILD-TYPE                                     4
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ZEB2 MUTATED                                        0
  ZEB2 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZEB2 MUTATED                                                            14
  ZEB2 WILD-TYPE                                                         158
D45V5, multiclass
                                                             clus
vv                                                            ZEB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           14
                                                             clus
vv                                                            ZEB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            158
                vv
clus              T1  T2  T3  T4
  ZEB2 MUTATED     4   9   1   1
  ZEB2 WILD-TYPE  32 107  13  11
D45V6, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  T1            4             32
  T2            9            107
  T3            1             13
  T4            1             11
                vv
clus              N0  N1  N2  N3
  ZEB2 MUTATED    10   3   1   1
  ZEB2 WILD-TYPE 107  36  16   4
D45V7, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  N0           10            107
  N1            3             36
  N2            1             16
  N3            1              4
                vv
clus              M0  M1  MX
  ZEB2 MUTATED    14   0   1
  ZEB2 WILD-TYPE 151   3   5
D45V8, multiclass
    clus
vv   ZEB2 MUTATED ZEB2 WILD-TYPE
  M0           14            151
  M1            0              3
  MX            1              5
                vv
clus              I II III+IV
  ZEB2 MUTATED    9  3      3
  ZEB2 WILD-TYPE 88 35     38
D45V9, multiclass
        clus
vv       ZEB2 MUTATED ZEB2 WILD-TYPE
  I                 9             88
  II                3             35
  III+IV            3             38
D45V10, binary
                cls
clus               0   1
  ZEB2 MUTATED     0  15
  ZEB2 WILD-TYPE   4 159
[1] "tbl2"
                cls
clus             [,1] [,2]
  ZEB2 MUTATED      0   15
  ZEB2 WILD-TYPE    4  159
     clus
vv    ZEB2 MUTATED ZEB2 WILD-TYPE
  NO             0              4
  YES           15            159
D45V11, continuous
D45V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZEB2 MUTATED                                            10
  ZEB2 WILD-TYPE                                          84
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZEB2 MUTATED                                        4              1
  ZEB2 WILD-TYPE                                     39             27
                vv
clus             LIFELONG NON-SMOKER
  ZEB2 MUTATED                     0
  ZEB2 WILD-TYPE                   8
D45V13, multiclass
                                             clus
vv                                            ZEB2 MUTATED ZEB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           10             84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 4             39
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D45V14, continuous

Clustering(46) Variable = PSG6 MUTATION ANALYSIS
D46V1, survival
                sevent
clus2             0  1
  PSG6 MUTATED    5  4
  PSG6 WILD-TYPE 92 66
  PSG6 MUTATED PSG6 WILD-TYPE 
             9            158 
  PSG6 MUTATED PSG6 WILD-TYPE 
             4             66 
$`PSG6 MUTATED`
TCGA-22-1011 TCGA-33-4566 TCGA-37-5819 TCGA-39-5037 TCGA-46-3768 TCGA-60-2709 
        1.74       173.79         3.39         0.79         9.96        49.48 
TCGA-66-2756 TCGA-66-2771 TCGA-66-2791 
        0.99        19.00         5.03 

$`PSG6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.02         2.79         5.42         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       10.22        21.70        68.45        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        4.04        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  PSG6 MUTATED PSG6 WILD-TYPE 
          0.79           0.10 
  PSG6 MUTATED PSG6 WILD-TYPE 
        173.79         141.34 
  PSG6 MUTATED PSG6 WILD-TYPE 
          5.03          18.46 
[1] "0.8 - 173.8 (5.0)"  "0.1 - 141.3 (18.5)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
  "PSG6 MUTATED" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" "PSG6 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE"   "PSG6 MUTATED" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
[1] "hr=" "1"  
D46V2, continuous
D46V3, binary
                cls
clus               0   1
  PSG6 MUTATED     0   9
  PSG6 WILD-TYPE  47 122
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      0    9
  PSG6 WILD-TYPE   47  122
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  FEMALE            0             47
  MALE              9            122
D46V4, continuous
[1] "Remove cluster labels:" "PSG6 MUTATED"          
clus
  PSG6 MUTATED PSG6 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-22-5492     TCGA-34-5234     TCGA-37-4133     TCGA-37-4135 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"PSG6 WILD-TYPE" "PSG6 WILD-TYPE" "PSG6 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PSG6 MUTATED                                       0
  PSG6 WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PSG6 MUTATED                                        0
  PSG6 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PSG6 MUTATED                                                             9
  PSG6 WILD-TYPE                                                         163
D46V5, multiclass
                                                             clus
vv                                                            PSG6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            9
                                                             clus
vv                                                            PSG6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            163
                vv
clus              T1  T2  T3  T4
  PSG6 MUTATED     1   6   1   1
  PSG6 WILD-TYPE  35 110  13  11
D46V6, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  T1            1             35
  T2            6            110
  T3            1             13
  T4            1             11
                vv
clus              N0  N1  N2  N3
  PSG6 MUTATED     4   3   1   1
  PSG6 WILD-TYPE 113  36  16   4
D46V7, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  N0            4            113
  N1            3             36
  N2            1             16
  N3            1              4
                vv
clus              M0  M1  MX
  PSG6 MUTATED     8   0   1
  PSG6 WILD-TYPE 157   3   5
D46V8, multiclass
    clus
vv   PSG6 MUTATED PSG6 WILD-TYPE
  M0            8            157
  M1            0              3
  MX            1              5
                vv
clus              I II III+IV
  PSG6 MUTATED    3  2      4
  PSG6 WILD-TYPE 94 36     37
D46V9, multiclass
        clus
vv       PSG6 MUTATED PSG6 WILD-TYPE
  I                 3             94
  II                2             36
  III+IV            4             37
D46V10, binary
                cls
clus               0   1
  PSG6 MUTATED     0   9
  PSG6 WILD-TYPE   4 165
[1] "tbl2"
                cls
clus             [,1] [,2]
  PSG6 MUTATED      0    9
  PSG6 WILD-TYPE    4  165
     clus
vv    PSG6 MUTATED PSG6 WILD-TYPE
  NO             0              4
  YES            9            165
D46V11, continuous
D46V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PSG6 MUTATED                                             4
  PSG6 WILD-TYPE                                          90
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PSG6 MUTATED                                        1              4
  PSG6 WILD-TYPE                                     42             24
                vv
clus             LIFELONG NON-SMOKER
  PSG6 MUTATED                     0
  PSG6 WILD-TYPE                   8
D46V13, multiclass
                                             clus
vv                                            PSG6 MUTATED PSG6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             42
  CURRENT SMOKER                                         4             24
  LIFELONG NON-SMOKER                                    0              8
D46V14, continuous

Clustering(47) Variable = REG1A MUTATION ANALYSIS
D47V1, survival
                 sevent
clus2              0  1
  REG1A MUTATED    7  3
  REG1A WILD-TYPE 90 67
  REG1A MUTATED REG1A WILD-TYPE 
             10             157 
  REG1A MUTATED REG1A WILD-TYPE 
              3              67 
$`REG1A MUTATED`
TCGA-18-3409 TCGA-21-5786 TCGA-22-4613 TCGA-22-5473 TCGA-22-5478 TCGA-37-3783 
       79.46        21.57        11.77        63.52         0.79         3.95 
TCGA-60-2724 TCGA-66-2744 TCGA-66-2766 TCGA-66-2777 
        1.22         0.99         1.02         2.01 

$`REG1A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       13.12        19.30        31.69        64.90        14.60        44.22 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         4.96         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       22.78        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        0.99         2.01         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  REG1A MUTATED REG1A WILD-TYPE 
           0.79            0.10 
  REG1A MUTATED REG1A WILD-TYPE 
          79.46          173.79 
  REG1A MUTATED REG1A WILD-TYPE 
           2.98           18.84 
[1] "0.8 - 79.5 (3.0)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"REG1A WILD-TYPE" "REG1A WILD-TYPE"   "REG1A MUTATED" "REG1A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "REG1A MUTATED" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"REG1A WILD-TYPE" "REG1A WILD-TYPE" "REG1A WILD-TYPE" 
[1] "hr=" "1"  
D47V2, continuous
D47V3, binary
                 cls
clus                0   1
  REG1A MUTATED     1  10
  REG1A WILD-TYPE  46 121
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1A MUTATED      1   10
  REG1A WILD-TYPE   46  121
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  FEMALE             1              46
  MALE              10             121
D47V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  REG1A MUTATED                                       1
  REG1A WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  REG1A MUTATED                                        0
  REG1A WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  REG1A MUTATED                                                            10
  REG1A WILD-TYPE                                                         162
D47V5, multiclass
                                                             clus
vv                                                            REG1A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            10
                                                             clus
vv                                                            REG1A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             162
                 vv
clus               T1  T2  T3  T4
  REG1A MUTATED     2   5   4   0
  REG1A WILD-TYPE  34 111  10  12
D47V6, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  T1             2              34
  T2             5             111
  T3             4              10
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  REG1A MUTATED     6   3   2   0
  REG1A WILD-TYPE 111  36  15   5
D47V7, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  N0             6             111
  N1             3              36
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  REG1A MUTATED    11   0   0
  REG1A WILD-TYPE 154   3   6
D47V8, multiclass
    clus
vv   REG1A MUTATED REG1A WILD-TYPE
  M0            11             154
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  REG1A MUTATED    5  1      4
  REG1A WILD-TYPE 92 37     37
D47V9, multiclass
        clus
vv       REG1A MUTATED REG1A WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             4              37
D47V10, binary
                 cls
clus                0   1
  REG1A MUTATED     0  11
  REG1A WILD-TYPE   4 163
[1] "tbl2"
                 cls
clus              [,1] [,2]
  REG1A MUTATED      0   11
  REG1A WILD-TYPE    4  163
     clus
vv    REG1A MUTATED REG1A WILD-TYPE
  NO              0               4
  YES            11             163
D47V11, continuous
D47V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  REG1A MUTATED                                             5
  REG1A WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  REG1A MUTATED                                        3              1
  REG1A WILD-TYPE                                     40             27
                 vv
clus              LIFELONG NON-SMOKER
  REG1A MUTATED                     1
  REG1A WILD-TYPE                   7
D47V13, multiclass
                                             clus
vv                                            REG1A MUTATED REG1A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D47V14, continuous

Clustering(48) Variable = CLSTN2 MUTATION ANALYSIS
D48V1, survival
                  sevent
clus2               0  1
  CLSTN2 MUTATED    8  8
  CLSTN2 WILD-TYPE 89 62
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
              16              151 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
               8               62 
$`CLSTN2 MUTATED`
TCGA-18-3414 TCGA-22-5473 TCGA-33-4583 TCGA-34-2600 TCGA-34-5236 TCGA-37-5819 
       13.02        63.52       141.34        61.61         9.04         3.39 
TCGA-39-5039 TCGA-43-3394 TCGA-43-6771 TCGA-51-4080 TCGA-60-2712 TCGA-60-2724 
       17.88        11.57         5.42         0.39         9.01         1.22 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2786 TCGA-66-2795 
        2.01         0.99        25.97         4.01 

$`CLSTN2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 
       32.84        50.24        51.78        32.68        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        7.82         6.81         0.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-43-2578 TCGA-43-3920 
       27.35        15.58        35.64         0.79        18.08        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         6.02         2.79         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       29.19        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       24.10        22.78        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         0.99         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6560 
        5.03        30.02        10.06        54.08        49.05         0.36 
TCGA-85-6561 
        0.79 

  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
            0.39             0.10 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
          141.34           173.79 
  CLSTN2 MUTATED CLSTN2 WILD-TYPE 
           9.025           19.000 
[1] "0.4 - 141.3 (9.0)"  "0.1 - 173.8 (19.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE"   "CLSTN2 MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" "CLSTN2 WILD-TYPE" 
[1] "hr=" "1.6"
D48V2, continuous
D48V3, binary
                  cls
clus                 0   1
  CLSTN2 MUTATED     4  13
  CLSTN2 WILD-TYPE  43 118
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLSTN2 MUTATED      4   13
  CLSTN2 WILD-TYPE   43  118
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  FEMALE              4               43
  MALE               13              118
D48V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CLSTN2 MUTATED                                       1
  CLSTN2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CLSTN2 MUTATED                                        0
  CLSTN2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CLSTN2 MUTATED                                                            16
  CLSTN2 WILD-TYPE                                                         156
D48V5, multiclass
                                                             clus
vv                                                            CLSTN2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             16
                                                             clus
vv                                                            CLSTN2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              156
                  vv
clus                T1  T2  T3  T4
  CLSTN2 MUTATED     4   6   3   4
  CLSTN2 WILD-TYPE  32 110  11   8
D48V6, multiclass
    clus
vv   CLSTN2 MUTATED CLSTN2 WILD-TYPE
  T1              4               32
  T2              6              110
  T3              3               11
  T4              4                8
                  vv
clus                N0  N1  N2  N3
  CLSTN2 MUTATED    10   5   2   0
  CLSTN2 WILD-TYPE 107  34  15   5
D48V7, multiclass
    clus
vv   CLSTN2 MUTATED CLSTN2 WILD-TYPE
  N0             10              107
  N1              5               34
  N2              2               15
  N3              0                5
                  vv
clus                M0  M1  MX
  CLSTN2 MUTATED    14   1   1
  CLSTN2 WILD-TYPE 151   2   5
D48V8, multiclass
    clus
vv   CLSTN2 MUTATED CLSTN2 WILD-TYPE
  M0             14              151
  M1              1                2
  MX              1                5
                  vv
clus                I II III+IV
  CLSTN2 MUTATED    7  4      6
  CLSTN2 WILD-TYPE 90 34     35
D48V9, multiclass
        clus
vv       CLSTN2 MUTATED CLSTN2 WILD-TYPE
  I                   7               90
  II                  4               34
  III+IV              6               35
D48V10, binary
                  cls
clus                 0   1
  CLSTN2 MUTATED     0  17
  CLSTN2 WILD-TYPE   4 157
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CLSTN2 MUTATED      0   17
  CLSTN2 WILD-TYPE    4  157
     clus
vv    CLSTN2 MUTATED CLSTN2 WILD-TYPE
  NO               0                4
  YES             17              157
D48V11, continuous
D48V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CLSTN2 MUTATED                                            10
  CLSTN2 WILD-TYPE                                          84
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CLSTN2 MUTATED                                        5              1
  CLSTN2 WILD-TYPE                                     38             27
                  vv
clus               LIFELONG NON-SMOKER
  CLSTN2 MUTATED                     0
  CLSTN2 WILD-TYPE                   8
D48V13, multiclass
                                             clus
vv                                            CLSTN2 MUTATED CLSTN2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             10               84
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               38
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D48V14, continuous

Clustering(49) Variable = MTNR1B MUTATION ANALYSIS
D49V1, survival
                  sevent
clus2               0  1
  MTNR1B MUTATED    6  3
  MTNR1B WILD-TYPE 91 67
  MTNR1B MUTATED MTNR1B WILD-TYPE 
               9              158 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
               3               67 
$`MTNR1B MUTATED`
TCGA-22-5471 TCGA-22-5489 TCGA-60-2698 TCGA-60-2707 TCGA-60-2711 TCGA-60-2715 
       31.69        62.86        10.22        21.70        29.19        35.34 
TCGA-60-2724 TCGA-66-2756 TCGA-66-2787 
        1.22         0.99        40.01 

$`MTNR1B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        13.12        19.30        11.77        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        0.10         2.04         1.02        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       22.78        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95         1.94        25.97        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  MTNR1B MUTATED MTNR1B WILD-TYPE 
            0.99             0.10 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
           62.86           173.79 
  MTNR1B MUTATED MTNR1B WILD-TYPE 
           29.19            16.78 
[1] "1.0 - 62.9 (29.2)"  "0.1 - 173.8 (16.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MTNR1B WILD-TYPE"   "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE"   "MTNR1B MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "MTNR1B MUTATED" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" "MTNR1B WILD-TYPE" 
[1] "hr=" "1.3"
D49V2, continuous
D49V3, binary
                  cls
clus                 0   1
  MTNR1B MUTATED     1   9
  MTNR1B WILD-TYPE  46 122
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MTNR1B MUTATED      1    9
  MTNR1B WILD-TYPE   46  122
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  FEMALE              1               46
  MALE                9              122
D49V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  MTNR1B MUTATED                                       0
  MTNR1B WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  MTNR1B MUTATED                                        0
  MTNR1B WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MTNR1B MUTATED                                                            10
  MTNR1B WILD-TYPE                                                         162
D49V5, multiclass
                                                             clus
vv                                                            MTNR1B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             10
                                                             clus
vv                                                            MTNR1B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              162
                  vv
clus                T1  T2  T3  T4
  MTNR1B MUTATED     3   5   1   1
  MTNR1B WILD-TYPE  33 111  13  11
D49V6, multiclass
    clus
vv   MTNR1B MUTATED MTNR1B WILD-TYPE
  T1              3               33
  T2              5              111
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  MTNR1B MUTATED     7   3   0   0
  MTNR1B WILD-TYPE 110  36  17   5
D49V7, multiclass
    clus
vv   MTNR1B MUTATED MTNR1B WILD-TYPE
  N0              7              110
  N1              3               36
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  MTNR1B MUTATED    10   0   0
  MTNR1B WILD-TYPE 155   3   6
D49V8, multiclass
    clus
vv   MTNR1B MUTATED MTNR1B WILD-TYPE
  M0             10              155
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  MTNR1B MUTATED    6  2      2
  MTNR1B WILD-TYPE 91 36     39
D49V9, multiclass
        clus
vv       MTNR1B MUTATED MTNR1B WILD-TYPE
  I                   6               91
  II                  2               36
  III+IV              2               39
D49V10, binary
                  cls
clus                 0   1
  MTNR1B MUTATED     1   9
  MTNR1B WILD-TYPE   3 165
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MTNR1B MUTATED      1    9
  MTNR1B WILD-TYPE    3  165
     clus
vv    MTNR1B MUTATED MTNR1B WILD-TYPE
  NO               1                3
  YES              9              165
D49V11, continuous
D49V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MTNR1B MUTATED                                             9
  MTNR1B WILD-TYPE                                          85
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MTNR1B MUTATED                                        1              0
  MTNR1B WILD-TYPE                                     42             28
                  vv
clus               LIFELONG NON-SMOKER
  MTNR1B MUTATED                     0
  MTNR1B WILD-TYPE                   8
D49V13, multiclass
                                             clus
vv                                            MTNR1B MUTATED MTNR1B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              9               85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D49V14, continuous

Clustering(50) Variable = RB1 MUTATION ANALYSIS
D50V1, survival
               sevent
clus2            0  1
  RB1 MUTATED    7  5
  RB1 WILD-TYPE 90 65
  RB1 MUTATED RB1 WILD-TYPE 
           12           155 
  RB1 MUTATED RB1 WILD-TYPE 
            5            65 
$`RB1 MUTATED`
TCGA-18-4086 TCGA-22-4601 TCGA-22-4607 TCGA-33-4533 TCGA-34-5240 TCGA-39-5021 
        2.79        34.75        19.30       114.05         7.73        68.58 
TCGA-39-5031 TCGA-43-2578 TCGA-43-6143 TCGA-56-1622 TCGA-66-2754 TCGA-66-2783 
       27.35        18.08         7.00        28.93         2.01        24.95 

$`RB1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60        82.98        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 
       15.58        35.64         0.79        17.88        11.57        18.84 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         0.39         2.07         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         0.99         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  RB1 MUTATED RB1 WILD-TYPE 
         2.01          0.10 
  RB1 MUTATED RB1 WILD-TYPE 
       114.05        173.79 
  RB1 MUTATED RB1 WILD-TYPE 
       22.125        16.600 
[1] "2.0 - 114.0 (22.1)" "0.1 - 173.8 (16.6)"
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-85-6560    TCGA-85-6561 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" 
[1] "hr=" "1.2"
D50V2, continuous
D50V3, binary
               cls
clus              0   1
  RB1 MUTATED     5   7
  RB1 WILD-TYPE  42 124
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      5    7
  RB1 WILD-TYPE   42  124
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           5            42
  MALE             7           124
D50V4, continuous
[1] "Remove cluster labels:" "RB1 MUTATED"           
clus
  RB1 MUTATED RB1 WILD-TYPE 
            1            35 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3410    TCGA-18-3414    TCGA-18-3419 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-21-5782    TCGA-21-5787    TCGA-22-4591    TCGA-22-4593    TCGA-22-4595 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-4599    TCGA-22-4604    TCGA-22-4613    TCGA-22-5472    TCGA-22-5473 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5474    TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-22-5485    TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-34-5234 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-37-4133    TCGA-37-4135    TCGA-37-5819    TCGA-60-2698    TCGA-60-2712 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-60-2715    TCGA-60-2725    TCGA-60-2726    TCGA-70-6722    TCGA-70-6723 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
               vv
clus            LUNG BASALOID SQUAMOUS CELL CARCINOMA
  RB1 MUTATED                                       2
  RB1 WILD-TYPE                                     3
               vv
clus            LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  RB1 MUTATED                                        0
  RB1 WILD-TYPE                                      1
               vv
clus            LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RB1 MUTATED                                                            10
  RB1 WILD-TYPE                                                         162
D50V5, multiclass
                                                             clus
vv                                                            RB1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                 2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          10
                                                             clus
vv                                                            RB1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           162
               vv
clus             T1  T2  T3  T4
  RB1 MUTATED     2   9   0   1
  RB1 WILD-TYPE  34 107  14  11
D50V6, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  T1           2            34
  T2           9           107
  T3           0            14
  T4           1            11
               vv
clus             N0  N1  N2  N3
  RB1 MUTATED     9   1   1   1
  RB1 WILD-TYPE 108  38  16   4
D50V7, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  N0           9           108
  N1           1            38
  N2           1            16
  N3           1             4
               vv
clus             M0  M1  MX
  RB1 MUTATED    12   0   0
  RB1 WILD-TYPE 153   3   6
D50V8, multiclass
    clus
vv   RB1 MUTATED RB1 WILD-TYPE
  M0          12           153
  M1           0             3
  MX           0             6
               vv
clus             I II III+IV
  RB1 MUTATED    8  1      3
  RB1 WILD-TYPE 89 37     38
D50V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  I                8            89
  II               1            37
  III+IV           3            38
D50V10, binary
               cls
clus              0   1
  RB1 MUTATED     0  12
  RB1 WILD-TYPE   4 162
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      0   12
  RB1 WILD-TYPE    4  162
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO            0             4
  YES          12           162
D50V11, continuous
D50V12, continuous
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RB1 MUTATED                                             8
  RB1 WILD-TYPE                                          86
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RB1 MUTATED                                        2              2
  RB1 WILD-TYPE                                     41             26
               vv
clus            LIFELONG NON-SMOKER
  RB1 MUTATED                     0
  RB1 WILD-TYPE                   8
D50V13, multiclass
                                             clus
vv                                            RB1 MUTATED RB1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           8            86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                2            41
  CURRENT SMOKER                                        2            26
  LIFELONG NON-SMOKER                                   0             8
D50V14, continuous

Clustering(51) Variable = ZNF567 MUTATION ANALYSIS
D51V1, survival
                  sevent
clus2               0  1
  ZNF567 MUTATED    1  2
  ZNF567 WILD-TYPE 96 68
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               3              164 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               2               68 
$`ZNF567 MUTATED`
TCGA-22-4591 TCGA-39-5024 TCGA-39-5030 
       20.45        70.03         1.94 

$`ZNF567 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        1.74        14.10        27.02        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
       60.76         1.71        24.33        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  ZNF567 MUTATED ZNF567 WILD-TYPE 
            1.94             0.10 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
           70.03           173.79 
  ZNF567 MUTATED ZNF567 WILD-TYPE 
           20.45            17.42 
[1] "1.9 - 70.0 (20.4)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"ZNF567 WILD-TYPE"   "ZNF567 MUTATED" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
[1] "hr=" "1.3"
D51V2, continuous
D51V3, binary
                  cls
clus                 0   1
  ZNF567 MUTATED     2   1
  ZNF567 WILD-TYPE  45 130
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF567 MUTATED      2    1
  ZNF567 WILD-TYPE   45  130
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  FEMALE              2               45
  MALE                1              130
D51V4, continuous
[1] "Remove cluster labels:" "ZNF567 MUTATED"        
clus
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4593 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZNF567 MUTATED                                       0
  ZNF567 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ZNF567 MUTATED                                        0
  ZNF567 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF567 MUTATED                                                             3
  ZNF567 WILD-TYPE                                                         169
D51V5, multiclass
                                                             clus
vv                                                            ZNF567 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              3
                                                             clus
vv                                                            ZNF567 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              169
                  vv
clus                T1  T2  T3  T4
  ZNF567 MUTATED     0   2   1   0
  ZNF567 WILD-TYPE  36 114  13  12
D51V6, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  T1              0               36
  T2              2              114
  T3              1               13
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  ZNF567 MUTATED     0   0   3   0
  ZNF567 WILD-TYPE 117  39  14   5
D51V7, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  N0              0              117
  N1              0               39
  N2              3               14
  N3              0                5
                  vv
clus                M0  M1  MX
  ZNF567 MUTATED     3   0   0
  ZNF567 WILD-TYPE 162   3   6
D51V8, multiclass
    clus
vv   ZNF567 MUTATED ZNF567 WILD-TYPE
  M0              3              162
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  ZNF567 MUTATED    0  0      3
  ZNF567 WILD-TYPE 97 38     38
D51V9, multiclass
        clus
vv       ZNF567 MUTATED ZNF567 WILD-TYPE
  I                   0               97
  II                  0               38
  III+IV              3               38
D51V10, binary
                  cls
clus                 0   1
  ZNF567 MUTATED     0   3
  ZNF567 WILD-TYPE   4 171
[1] "tbl2"
                  cls
clus               [,1] [,2]
  ZNF567 MUTATED      0    3
  ZNF567 WILD-TYPE    4  171
     clus
vv    ZNF567 MUTATED ZNF567 WILD-TYPE
  NO               0                4
  YES              3              171
D51V11, continuous
[1] "Remove cluster labels:" "ZNF567 MUTATED"        
clus
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               2              144 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3411       TCGA-18-3412       TCGA-18-3414       TCGA-18-3415 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3416       TCGA-18-3417       TCGA-18-3419       TCGA-18-3421 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-4083       TCGA-18-4086       TCGA-18-5592       TCGA-21-1070 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1071       TCGA-21-1076       TCGA-21-1077       TCGA-21-1078 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1081       TCGA-21-5782       TCGA-21-5784       TCGA-21-5786 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5787       TCGA-22-0944       TCGA-22-1002       TCGA-22-1011 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1012       TCGA-22-1016       TCGA-22-4593       TCGA-22-4595 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5480       TCGA-22-5482 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4532       TCGA-33-4533       TCGA-33-4538       TCGA-33-4547 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4566       TCGA-33-4582       TCGA-33-4583       TCGA-33-4586 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-6737       TCGA-34-2596       TCGA-34-2600       TCGA-34-2608 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5231       TCGA-34-5240       TCGA-34-5241       TCGA-34-5928 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5929       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5016       TCGA-39-5019       TCGA-39-5021       TCGA-39-5022 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5027       TCGA-39-5028       TCGA-39-5029       TCGA-39-5031 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5035       TCGA-39-5036       TCGA-39-5037       TCGA-39-5039 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-2578       TCGA-43-3394       TCGA-43-3920       TCGA-43-5668 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6143       TCGA-43-6647       TCGA-43-6770       TCGA-43-6771 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-51-4079       TCGA-51-4081       TCGA-56-1622       TCGA-60-2707 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2708       TCGA-60-2709       TCGA-60-2710       TCGA-60-2711 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2713       TCGA-60-2715       TCGA-60-2719 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2720       TCGA-60-2721       TCGA-60-2722       TCGA-60-2723 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2724       TCGA-60-2725       TCGA-60-2726       TCGA-63-5131 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-63-6202       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2757 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2758       TCGA-66-2759       TCGA-66-2763       TCGA-66-2765 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2766       TCGA-66-2767       TCGA-66-2770       TCGA-66-2771 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2773       TCGA-66-2777       TCGA-66-2778       TCGA-66-2780 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2781       TCGA-66-2782       TCGA-66-2783       TCGA-66-2785 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
D51V12, continuous
[1] "Remove cluster labels:" "ZNF567 MUTATED"        
clus
  ZNF567 MUTATED ZNF567 WILD-TYPE 
               2              125 
      TCGA-18-3407       TCGA-18-3408       TCGA-18-3409       TCGA-18-3412 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3414       TCGA-18-3415       TCGA-18-3417       TCGA-18-3419 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4086       TCGA-18-4721       TCGA-21-1070 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5787       TCGA-22-1002       TCGA-22-1012 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4593       TCGA-22-4607       TCGA-22-4613 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5471       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5489 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4533       TCGA-33-4547       TCGA-33-4583 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-33-4586       TCGA-34-2596       TCGA-34-2600       TCGA-34-2608 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-34-5234       TCGA-34-5241       TCGA-34-5928       TCGA-34-5929 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-39-5016 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5021       TCGA-39-5022       TCGA-39-5027       TCGA-39-5028 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5031       TCGA-39-5035       TCGA-39-5036 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-39-5039       TCGA-43-2578       TCGA-43-3920       TCGA-43-5668 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-43-6143       TCGA-43-6647       TCGA-43-6771       TCGA-46-6025 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-46-6026       TCGA-51-4079       TCGA-51-4080       TCGA-56-1622 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-56-5897       TCGA-56-6545       TCGA-56-6546       TCGA-60-2698 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2707       TCGA-60-2708       TCGA-60-2710       TCGA-60-2711 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-63-5128       TCGA-63-5131 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-63-6202       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2756 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2757       TCGA-66-2758       TCGA-66-2759       TCGA-66-2763 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2765       TCGA-66-2766       TCGA-66-2767       TCGA-66-2770 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2771       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2780       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2785       TCGA-66-2786       TCGA-66-2787       TCGA-66-2788 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2789       TCGA-66-2791       TCGA-66-2792       TCGA-66-2793 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-66-2794       TCGA-66-2795       TCGA-66-2800       TCGA-85-6560 
"ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" "ZNF567 WILD-TYPE" 
      TCGA-85-6561 
"ZNF567 WILD-TYPE" 
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZNF567 MUTATED                                             1
  ZNF567 WILD-TYPE                                          93
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZNF567 MUTATED                                        1              1
  ZNF567 WILD-TYPE                                     42             27
                  vv
clus               LIFELONG NON-SMOKER
  ZNF567 MUTATED                     0
  ZNF567 WILD-TYPE                   8
D51V13, multiclass
                                             clus
vv                                            ZNF567 MUTATED ZNF567 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D51V14, continuous

Clustering(52) Variable = OR2A5 MUTATION ANALYSIS
D52V1, survival
                 sevent
clus2              0  1
  OR2A5 MUTATED    5  3
  OR2A5 WILD-TYPE 92 67
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              8             159 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
              3              67 
$`OR2A5 MUTATED`
TCGA-34-5929 TCGA-39-5016 TCGA-43-6771 TCGA-51-4079 TCGA-60-2709 TCGA-60-2711 
        4.96        74.07         5.42         0.39        49.48        29.19 
TCGA-66-2744 TCGA-66-2757 
        0.99         0.99 

$`OR2A5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
       22.95         5.52         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39         3.39        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         6.02         2.79         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2712 
        1.02        10.22        21.70        68.45        55.40         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2A5 MUTATED OR2A5 WILD-TYPE 
           0.39            0.10 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
          74.07          173.79 
  OR2A5 MUTATED OR2A5 WILD-TYPE 
           5.19           18.08 
[1] "0.4 - 74.1 (5.2)"   "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "OR2A5 MUTATED" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "OR2A5 MUTATED" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "OR2A5 MUTATED" "OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2A5 WILD-TYPE"   "OR2A5 MUTATED" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" "OR2A5 WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
                 cls
clus                0   1
  OR2A5 MUTATED     4   4
  OR2A5 WILD-TYPE  43 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2A5 MUTATED      4    4
  OR2A5 WILD-TYPE   43  127
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  FEMALE             4              43
  MALE               4             127
D52V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2A5 MUTATED                                       1
  OR2A5 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2A5 MUTATED                                        0
  OR2A5 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2A5 MUTATED                                                             7
  OR2A5 WILD-TYPE                                                         165
D52V5, multiclass
                                                             clus
vv                                                            OR2A5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR2A5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  OR2A5 MUTATED     1   7   0   0
  OR2A5 WILD-TYPE  35 109  14  12
D52V6, multiclass
    clus
vv   OR2A5 MUTATED OR2A5 WILD-TYPE
  T1             1              35
  T2             7             109
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR2A5 MUTATED     6   2   0   0
  OR2A5 WILD-TYPE 111  37  17   5
D52V7, multiclass
    clus
vv   OR2A5 MUTATED OR2A5 WILD-TYPE
  N0             6             111
  N1             2              37
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2A5 MUTATED     5   0   2
  OR2A5 WILD-TYPE 160   3   4
D52V8, multiclass
    clus
vv   OR2A5 MUTATED OR2A5 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             2               4
                 vv
clus               I II III+IV
  OR2A5 MUTATED    6  2      0
  OR2A5 WILD-TYPE 91 36     41
D52V9, multiclass
        clus
vv       OR2A5 MUTATED OR2A5 WILD-TYPE
  I                  6              91
  II                 2              36
  III+IV             0              41
D52V10, binary
                 cls
clus                0   1
  OR2A5 MUTATED     0   8
  OR2A5 WILD-TYPE   4 166
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2A5 MUTATED      0    8
  OR2A5 WILD-TYPE    4  166
     clus
vv    OR2A5 MUTATED OR2A5 WILD-TYPE
  NO              0               4
  YES             8             166
D52V11, continuous
D52V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2A5 MUTATED                                             5
  OR2A5 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2A5 MUTATED                                        2              1
  OR2A5 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2A5 MUTATED                     0
  OR2A5 WILD-TYPE                   8
D52V13, multiclass
                                             clus
vv                                            OR2A5 MUTATED OR2A5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D52V14, continuous

Clustering(53) Variable = PARK2 MUTATION ANALYSIS
D53V1, survival
                 sevent
clus2              0  1
  PARK2 MUTATED    6  4
  PARK2 WILD-TYPE 91 66
  PARK2 MUTATED PARK2 WILD-TYPE 
             10             157 
  PARK2 MUTATED PARK2 WILD-TYPE 
              4              66 
$`PARK2 MUTATED`
TCGA-18-3409 TCGA-21-1081 TCGA-21-5787 TCGA-22-4593 TCGA-34-2608 TCGA-60-2713 
       79.46         9.30        10.82        35.08        32.84        47.87 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2763 TCGA-66-2777 
        2.01         0.99         0.99         2.01 

$`PARK2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 
       46.88        60.89        34.78        15.55        31.63        29.85 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         0.99         0.92         0.99        20.98        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  PARK2 MUTATED PARK2 WILD-TYPE 
           0.99            0.10 
  PARK2 MUTATED PARK2 WILD-TYPE 
          79.46          173.79 
  PARK2 MUTATED PARK2 WILD-TYPE 
          10.06           18.08 
[1] "1.0 - 79.5 (10.1)"  "0.1 - 173.8 (18.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PARK2 WILD-TYPE"   "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
  "PARK2 MUTATED" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
[1] "hr=" "1.1"
D53V2, continuous
D53V3, binary
                 cls
clus                0   1
  PARK2 MUTATED     2   8
  PARK2 WILD-TYPE  45 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARK2 MUTATED      2    8
  PARK2 WILD-TYPE   45  123
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  FEMALE             2              45
  MALE               8             123
D53V4, continuous
[1] "Remove cluster labels:" "PARK2 MUTATED"         
clus
  PARK2 MUTATED PARK2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-22-4591      TCGA-22-4595 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"PARK2 WILD-TYPE" "PARK2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PARK2 MUTATED                                       1
  PARK2 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PARK2 MUTATED                                        0
  PARK2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PARK2 MUTATED                                                             9
  PARK2 WILD-TYPE                                                         163
D53V5, multiclass
                                                             clus
vv                                                            PARK2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            PARK2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                 vv
clus               T1  T2  T3  T4
  PARK2 MUTATED     2   8   0   0
  PARK2 WILD-TYPE  34 108  14  12
D53V6, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  T1             2              34
  T2             8             108
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  PARK2 MUTATED     7   1   2   0
  PARK2 WILD-TYPE 110  38  15   5
D53V7, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  N0             7             110
  N1             1              38
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  PARK2 MUTATED    10   0   0
  PARK2 WILD-TYPE 155   3   6
D53V8, multiclass
    clus
vv   PARK2 MUTATED PARK2 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  PARK2 MUTATED    5  2      2
  PARK2 WILD-TYPE 92 36     39
D53V9, multiclass
        clus
vv       PARK2 MUTATED PARK2 WILD-TYPE
  I                  5              92
  II                 2              36
  III+IV             2              39
D53V10, binary
                 cls
clus                0   1
  PARK2 MUTATED     1   9
  PARK2 WILD-TYPE   3 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PARK2 MUTATED      1    9
  PARK2 WILD-TYPE    3  165
     clus
vv    PARK2 MUTATED PARK2 WILD-TYPE
  NO              1               3
  YES             9             165
D53V11, continuous
D53V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PARK2 MUTATED                                             7
  PARK2 WILD-TYPE                                          87
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PARK2 MUTATED                                        2              1
  PARK2 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  PARK2 MUTATED                     0
  PARK2 WILD-TYPE                   8
D53V13, multiclass
                                             clus
vv                                            PARK2 MUTATED PARK2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D53V14, continuous

Clustering(54) Variable = HS6ST1 MUTATION ANALYSIS
D54V1, survival
                  sevent
clus2               0  1
  HS6ST1 MUTATED    4  1
  HS6ST1 WILD-TYPE 93 69
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               5              162 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
               1               69 
$`HS6ST1 MUTATED`
TCGA-18-3409 TCGA-39-5030 TCGA-43-3394 TCGA-66-2756 TCGA-66-2771 
       79.46         1.94        11.57         0.99        19.00 

$`HS6ST1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5035 
       70.03        60.76         1.71        24.33        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 
       35.64         0.79        17.88        18.08        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         2.01        23.01         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
            0.99             0.10 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
           79.46           173.79 
  HS6ST1 MUTATED HS6ST1 WILD-TYPE 
           11.57            17.98 
[1] "1.0 - 79.5 (11.6)"  "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
  "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE"   "HS6ST1 MUTATED" "HS6ST1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" "HS6ST1 WILD-TYPE" 
[1] "hr=" "1.9"
D54V2, continuous
D54V3, binary
                  cls
clus                 0   1
  HS6ST1 MUTATED     1   4
  HS6ST1 WILD-TYPE  46 127
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HS6ST1 MUTATED      1    4
  HS6ST1 WILD-TYPE   46  127
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  FEMALE              1               46
  MALE                4              127
D54V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HS6ST1 MUTATED                                       1
  HS6ST1 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HS6ST1 MUTATED                                        0
  HS6ST1 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HS6ST1 MUTATED                                                             4
  HS6ST1 WILD-TYPE                                                         168
D54V5, multiclass
                                                             clus
vv                                                            HS6ST1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              4
                                                             clus
vv                                                            HS6ST1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              168
                  vv
clus                T1  T2  T3  T4
  HS6ST1 MUTATED     1   3   0   1
  HS6ST1 WILD-TYPE  35 113  14  11
D54V6, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  T1              1               35
  T2              3              113
  T3              0               14
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  HS6ST1 MUTATED     3   1   1   0
  HS6ST1 WILD-TYPE 114  38  16   5
D54V7, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  N0              3              114
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  HS6ST1 MUTATED     5   0   0
  HS6ST1 WILD-TYPE 160   3   6
D54V8, multiclass
    clus
vv   HS6ST1 MUTATED HS6ST1 WILD-TYPE
  M0              5              160
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  HS6ST1 MUTATED    1  1      2
  HS6ST1 WILD-TYPE 96 37     39
D54V9, multiclass
        clus
vv       HS6ST1 MUTATED HS6ST1 WILD-TYPE
  I                   1               96
  II                  1               37
  III+IV              2               39
D54V10, binary
                  cls
clus                 0   1
  HS6ST1 MUTATED     0   5
  HS6ST1 WILD-TYPE   4 169
[1] "tbl2"
                  cls
clus               [,1] [,2]
  HS6ST1 MUTATED      0    5
  HS6ST1 WILD-TYPE    4  169
     clus
vv    HS6ST1 MUTATED HS6ST1 WILD-TYPE
  NO               0                4
  YES              5              169
D54V11, continuous
D54V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HS6ST1 MUTATED                                             2
  HS6ST1 WILD-TYPE                                          92
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HS6ST1 MUTATED                                        2              1
  HS6ST1 WILD-TYPE                                     41             27
                  vv
clus               LIFELONG NON-SMOKER
  HS6ST1 MUTATED                     0
  HS6ST1 WILD-TYPE                   8
D54V13, multiclass
                                             clus
vv                                            HS6ST1 MUTATED HS6ST1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D54V14, continuous

Clustering(55) Variable = RNF144A MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                0  1
  RNF144A MUTATED    4  3
  RNF144A WILD-TYPE 93 67
  RNF144A MUTATED RNF144A WILD-TYPE 
                7               160 
  RNF144A MUTATED RNF144A WILD-TYPE 
                3                67 
$`RNF144A MUTATED`
TCGA-22-1016 TCGA-34-2600 TCGA-34-5236 TCGA-39-5019 TCGA-43-3394 TCGA-66-2756 
       27.02        61.61         9.04        44.71        11.57         0.99 
TCGA-66-2786 
       25.97 

$`RNF144A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
        1.74        14.10        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       19.76         2.63        32.84        50.24        51.78        32.68 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       17.88        18.08        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
       12.03         3.98        12.00        24.95         1.94        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  RNF144A MUTATED RNF144A WILD-TYPE 
             0.99              0.10 
  RNF144A MUTATED RNF144A WILD-TYPE 
            61.61            173.79 
  RNF144A MUTATED RNF144A WILD-TYPE 
            25.97             17.42 
[1] "1.0 - 61.6 (26.0)"  "0.1 - 173.8 (17.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" "RNF144A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" "RNF144A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" "RNF144A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
  "RNF144A MUTATED" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE"   "RNF144A MUTATED" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"RNF144A WILD-TYPE" "RNF144A WILD-TYPE" "RNF144A WILD-TYPE" 
[1] "hr=" "1.1"
D55V2, continuous
D55V3, binary
                   cls
clus                  0   1
  RNF144A MUTATED     2   5
  RNF144A WILD-TYPE  45 126
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNF144A MUTATED      2    5
  RNF144A WILD-TYPE   45  126
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  FEMALE               2                45
  MALE                 5               126
D55V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  RNF144A MUTATED                                       0
  RNF144A WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  RNF144A MUTATED                                        0
  RNF144A WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RNF144A MUTATED                                                             7
  RNF144A WILD-TYPE                                                         165
D55V5, multiclass
                                                             clus
vv                                                            RNF144A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               7
                                                             clus
vv                                                            RNF144A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               165
                   vv
clus                 T1  T2  T3  T4
  RNF144A MUTATED     2   3   1   1
  RNF144A WILD-TYPE  34 113  13  11
D55V6, multiclass
    clus
vv   RNF144A MUTATED RNF144A WILD-TYPE
  T1               2                34
  T2               3               113
  T3               1                13
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  RNF144A MUTATED     7   0   0   0
  RNF144A WILD-TYPE 110  39  17   5
D55V7, multiclass
    clus
vv   RNF144A MUTATED RNF144A WILD-TYPE
  N0               7               110
  N1               0                39
  N2               0                17
  N3               0                 5
                   vv
clus                 M0  M1  MX
  RNF144A MUTATED     7   0   0
  RNF144A WILD-TYPE 158   3   6
D55V8, multiclass
    clus
vv   RNF144A MUTATED RNF144A WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  RNF144A MUTATED    5  1      1
  RNF144A WILD-TYPE 92 37     40
D55V9, multiclass
        clus
vv       RNF144A MUTATED RNF144A WILD-TYPE
  I                    5                92
  II                   1                37
  III+IV               1                40
D55V10, binary
                   cls
clus                  0   1
  RNF144A MUTATED     0   7
  RNF144A WILD-TYPE   4 167
[1] "tbl2"
                   cls
clus                [,1] [,2]
  RNF144A MUTATED      0    7
  RNF144A WILD-TYPE    4  167
     clus
vv    RNF144A MUTATED RNF144A WILD-TYPE
  NO                0                 4
  YES               7               167
D55V11, continuous
D55V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RNF144A MUTATED                                             3
  RNF144A WILD-TYPE                                          91
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RNF144A MUTATED                                        2              1
  RNF144A WILD-TYPE                                     41             27
                   vv
clus                LIFELONG NON-SMOKER
  RNF144A MUTATED                     0
  RNF144A WILD-TYPE                   8
D55V13, multiclass
                                             clus
vv                                            RNF144A MUTATED RNF144A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               3                91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       0                 8
D55V14, continuous

Clustering(56) Variable = CALN1 MUTATION ANALYSIS
D56V1, survival
                 sevent
clus2              0  1
  CALN1 MUTATED    7  2
  CALN1 WILD-TYPE 90 68
  CALN1 MUTATED CALN1 WILD-TYPE 
              9             158 
  CALN1 MUTATED CALN1 WILD-TYPE 
              2              68 
$`CALN1 MUTATED`
TCGA-18-4721 TCGA-21-1081 TCGA-22-5474 TCGA-37-4135 TCGA-37-5819 TCGA-39-5037 
       90.51         9.30        14.60         6.81         3.39         0.79 
TCGA-66-2763 TCGA-66-2768 TCGA-66-2783 
        0.99         2.01        24.95 

$`CALN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 
       46.88        60.89        34.78        15.55        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
        3.95         0.43         7.82         0.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        15.58        35.64        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 
       20.98        25.02         2.01         1.02         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CALN1 MUTATED CALN1 WILD-TYPE 
           0.79            0.10 
  CALN1 MUTATED CALN1 WILD-TYPE 
          90.51          173.79 
  CALN1 MUTATED CALN1 WILD-TYPE 
           6.81           18.92 
[1] "0.8 - 90.5 (6.8)"   "0.1 - 173.8 (18.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CALN1 WILD-TYPE"   "CALN1 MUTATED" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CALN1 WILD-TYPE" "CALN1 WILD-TYPE" "CALN1 WILD-TYPE" 
[1] "hr=" "1.2"
D56V2, continuous
D56V3, binary
                 cls
clus                0   1
  CALN1 MUTATED     1   8
  CALN1 WILD-TYPE  46 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CALN1 MUTATED      1    8
  CALN1 WILD-TYPE   46  123
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  FEMALE             1              46
  MALE               8             123
D56V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CALN1 MUTATED                                       0
  CALN1 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CALN1 MUTATED                                        0
  CALN1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CALN1 MUTATED                                                             9
  CALN1 WILD-TYPE                                                         163
D56V5, multiclass
                                                             clus
vv                                                            CALN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            CALN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                 vv
clus               T1  T2  T3  T4
  CALN1 MUTATED     2   7   0   0
  CALN1 WILD-TYPE  34 109  14  12
D56V6, multiclass
    clus
vv   CALN1 MUTATED CALN1 WILD-TYPE
  T1             2              34
  T2             7             109
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  CALN1 MUTATED     4   3   1   1
  CALN1 WILD-TYPE 113  36  16   4
D56V7, multiclass
    clus
vv   CALN1 MUTATED CALN1 WILD-TYPE
  N0             4             113
  N1             3              36
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  CALN1 MUTATED     9   0   0
  CALN1 WILD-TYPE 156   3   6
D56V8, multiclass
    clus
vv   CALN1 MUTATED CALN1 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  CALN1 MUTATED    3  3      3
  CALN1 WILD-TYPE 94 35     38
D56V9, multiclass
        clus
vv       CALN1 MUTATED CALN1 WILD-TYPE
  I                  3              94
  II                 3              35
  III+IV             3              38
D56V10, binary
                 cls
clus                0   1
  CALN1 MUTATED     0   9
  CALN1 WILD-TYPE   4 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CALN1 MUTATED      0    9
  CALN1 WILD-TYPE    4  165
     clus
vv    CALN1 MUTATED CALN1 WILD-TYPE
  NO              0               4
  YES             9             165
D56V11, continuous
D56V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CALN1 MUTATED                                             5
  CALN1 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CALN1 MUTATED                                        2              1
  CALN1 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  CALN1 MUTATED                     1
  CALN1 WILD-TYPE                   7
D56V13, multiclass
                                             clus
vv                                            CALN1 MUTATED CALN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D56V14, continuous

Clustering(57) Variable = ZNF80 MUTATION ANALYSIS
D57V1, survival
                 sevent
clus2              0  1
  ZNF80 MUTATED    3  4
  ZNF80 WILD-TYPE 94 66
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              7             160 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              4              66 
$`ZNF80 MUTATED`
TCGA-18-3409 TCGA-22-4595 TCGA-37-3789 TCGA-39-5021 TCGA-56-1622 TCGA-66-2766 
       79.46        24.13         0.43        68.58        28.93         1.02 
TCGA-66-2791 
        5.03 

$`ZNF80 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        20.45        35.08        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         0.39         2.07         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
        0.99        20.98        25.02         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  ZNF80 MUTATED ZNF80 WILD-TYPE 
           0.43            0.10 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
          79.46          173.79 
  ZNF80 MUTATED ZNF80 WILD-TYPE 
          24.13           17.42 
[1] "0.4 - 79.5 (24.1)"  "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" "ZNF80 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE"   "ZNF80 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
[1] "hr=" "1.2"
D57V2, continuous
D57V3, binary
                 cls
clus                0   1
  ZNF80 MUTATED     0   7
  ZNF80 WILD-TYPE  47 124
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF80 MUTATED      0    7
  ZNF80 WILD-TYPE   47  124
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  FEMALE             0              47
  MALE               7             124
D57V4, continuous
[1] "Remove cluster labels:" "ZNF80 MUTATED"         
clus
  ZNF80 MUTATED ZNF80 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" "ZNF80 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZNF80 MUTATED                                       1
  ZNF80 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ZNF80 MUTATED                                        0
  ZNF80 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZNF80 MUTATED                                                             6
  ZNF80 WILD-TYPE                                                         166
D57V5, multiclass
                                                             clus
vv                                                            ZNF80 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            ZNF80 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  ZNF80 MUTATED     1   5   1   0
  ZNF80 WILD-TYPE  35 111  13  12
D57V6, multiclass
    clus
vv   ZNF80 MUTATED ZNF80 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  ZNF80 MUTATED     4   0   2   1
  ZNF80 WILD-TYPE 113  39  15   4
D57V7, multiclass
    clus
vv   ZNF80 MUTATED ZNF80 WILD-TYPE
  N0             4             113
  N1             0              39
  N2             2              15
  N3             1               4
                 vv
clus               M0  M1  MX
  ZNF80 MUTATED     5   0   0
  ZNF80 WILD-TYPE 160   3   6
D57V8, multiclass
    clus
vv   ZNF80 MUTATED ZNF80 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  ZNF80 MUTATED    3  0      3
  ZNF80 WILD-TYPE 94 38     38
D57V9, multiclass
        clus
vv       ZNF80 MUTATED ZNF80 WILD-TYPE
  I                  3              94
  II                 0              38
  III+IV             3              38
D57V10, binary
                 cls
clus                0   1
  ZNF80 MUTATED     1   6
  ZNF80 WILD-TYPE   3 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZNF80 MUTATED      1    6
  ZNF80 WILD-TYPE    3  168
     clus
vv    ZNF80 MUTATED ZNF80 WILD-TYPE
  NO              1               3
  YES             6             168
D57V11, continuous
D57V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZNF80 MUTATED                                             3
  ZNF80 WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZNF80 MUTATED                                        2              1
  ZNF80 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  ZNF80 MUTATED                     1
  ZNF80 WILD-TYPE                   7
D57V13, multiclass
                                             clus
vv                                            ZNF80 MUTATED ZNF80 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D57V14, continuous

Clustering(58) Variable = CLVS2 MUTATION ANALYSIS
D58V1, survival
                 sevent
clus2              0  1
  CLVS2 MUTATED    5  4
  CLVS2 WILD-TYPE 92 66
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              9             158 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              4              66 
$`CLVS2 MUTATED`
TCGA-18-3416 TCGA-22-1002 TCGA-22-5473 TCGA-34-2600 TCGA-34-5929 TCGA-43-3920 
       28.34         4.31        63.52        61.61         4.96        18.84 
TCGA-60-2723 TCGA-66-2786 TCGA-66-2787 
       22.78        25.97        40.01 

$`CLVS2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57        10.82         7.33         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       13.12        19.30        11.77        31.69        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 
        7.73        14.07        22.95         5.52         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 
        3.98        12.00        24.95         1.94        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CLVS2 MUTATED CLVS2 WILD-TYPE 
           4.31            0.10 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
          63.52          173.79 
  CLVS2 MUTATED CLVS2 WILD-TYPE 
          25.97           16.09 
[1] "4.3 - 63.5 (26.0)"  "0.1 - 173.8 (16.1)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" "CLVS2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE"   "CLVS2 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "CLVS2 MUTATED" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
[1] "hr=" "1.1"
D58V2, continuous
D58V3, binary
                 cls
clus                0   1
  CLVS2 MUTATED     4   5
  CLVS2 WILD-TYPE  43 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLVS2 MUTATED      4    5
  CLVS2 WILD-TYPE   43  126
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  FEMALE             4              43
  MALE               5             126
D58V4, continuous
[1] "Remove cluster labels:" "CLVS2 MUTATED"         
clus
  CLVS2 MUTATED CLVS2 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" "CLVS2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CLVS2 MUTATED                                       0
  CLVS2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CLVS2 MUTATED                                        0
  CLVS2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CLVS2 MUTATED                                                             9
  CLVS2 WILD-TYPE                                                         163
D58V5, multiclass
                                                             clus
vv                                                            CLVS2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            CLVS2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                 vv
clus               T1  T2  T3  T4
  CLVS2 MUTATED     4   4   1   0
  CLVS2 WILD-TYPE  32 112  13  12
D58V6, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  T1             4              32
  T2             4             112
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  CLVS2 MUTATED     8   1   0   0
  CLVS2 WILD-TYPE 109  38  17   5
D58V7, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  N0             8             109
  N1             1              38
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  CLVS2 MUTATED     9   0   0
  CLVS2 WILD-TYPE 156   3   6
D58V8, multiclass
    clus
vv   CLVS2 MUTATED CLVS2 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  CLVS2 MUTATED    8  1      0
  CLVS2 WILD-TYPE 89 37     41
D58V9, multiclass
        clus
vv       CLVS2 MUTATED CLVS2 WILD-TYPE
  I                  8              89
  II                 1              37
  III+IV             0              41
D58V10, binary
                 cls
clus                0   1
  CLVS2 MUTATED     0   9
  CLVS2 WILD-TYPE   4 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  CLVS2 MUTATED      0    9
  CLVS2 WILD-TYPE    4  165
     clus
vv    CLVS2 MUTATED CLVS2 WILD-TYPE
  NO              0               4
  YES             9             165
D58V11, continuous
D58V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CLVS2 MUTATED                                             6
  CLVS2 WILD-TYPE                                          88
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CLVS2 MUTATED                                        3              0
  CLVS2 WILD-TYPE                                     40             28
                 vv
clus              LIFELONG NON-SMOKER
  CLVS2 MUTATED                     0
  CLVS2 WILD-TYPE                   8
D58V13, multiclass
                                             clus
vv                                            CLVS2 MUTATED CLVS2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             6              88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D58V14, continuous

Clustering(59) Variable = OR5M9 MUTATION ANALYSIS
D59V1, survival
                 sevent
clus2              0  1
  OR5M9 MUTATED    2  4
  OR5M9 WILD-TYPE 95 66
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              6             161 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              4              66 
$`OR5M9 MUTATED`
TCGA-21-5786 TCGA-22-4593 TCGA-22-4613 TCGA-43-6771 TCGA-66-2742 TCGA-66-2789 
       21.57        35.08        11.77         5.42        21.07         4.04 

$`OR5M9 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        20.45        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        7.00         6.02         2.79         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  OR5M9 MUTATED OR5M9 WILD-TYPE 
           4.04            0.10 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
          35.08          173.79 
  OR5M9 MUTATED OR5M9 WILD-TYPE 
          16.42           17.88 
[1] "4.0 - 35.1 (16.4)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "OR5M9 MUTATED" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE"   "OR5M9 MUTATED" "OR5M9 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
[1] "hr=" "2.2"
D59V2, continuous
D59V3, binary
                 cls
clus                0   1
  OR5M9 MUTATED     1   7
  OR5M9 WILD-TYPE  46 124
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5M9 MUTATED      1    7
  OR5M9 WILD-TYPE   46  124
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  FEMALE             1              46
  MALE               7             124
D59V4, continuous
[1] "Remove cluster labels:" "OR5M9 MUTATED"         
clus
  OR5M9 MUTATED OR5M9 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR5M9 WILD-TYPE" "OR5M9 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR5M9 MUTATED                                       0
  OR5M9 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR5M9 MUTATED                                        0
  OR5M9 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5M9 MUTATED                                                             8
  OR5M9 WILD-TYPE                                                         164
D59V5, multiclass
                                                             clus
vv                                                            OR5M9 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            OR5M9 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  OR5M9 MUTATED     2   5   0   1
  OR5M9 WILD-TYPE  34 111  14  11
D59V6, multiclass
    clus
vv   OR5M9 MUTATED OR5M9 WILD-TYPE
  T1             2              34
  T2             5             111
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR5M9 MUTATED     6   1   0   1
  OR5M9 WILD-TYPE 111  38  17   4
D59V7, multiclass
    clus
vv   OR5M9 MUTATED OR5M9 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             0              17
  N3             1               4
                 vv
clus               M0  M1  MX
  OR5M9 MUTATED     6   1   1
  OR5M9 WILD-TYPE 159   2   5
D59V8, multiclass
    clus
vv   OR5M9 MUTATED OR5M9 WILD-TYPE
  M0             6             159
  M1             1               2
  MX             1               5
                 vv
clus               I II III+IV
  OR5M9 MUTATED    4  2      2
  OR5M9 WILD-TYPE 93 36     39
D59V9, multiclass
        clus
vv       OR5M9 MUTATED OR5M9 WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             2              39
D59V10, binary
                 cls
clus                0   1
  OR5M9 MUTATED     0   8
  OR5M9 WILD-TYPE   4 166
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5M9 MUTATED      0    8
  OR5M9 WILD-TYPE    4  166
     clus
vv    OR5M9 MUTATED OR5M9 WILD-TYPE
  NO              0               4
  YES             8             166
D59V11, continuous
D59V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5M9 MUTATED                                             4
  OR5M9 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5M9 MUTATED                                        3              1
  OR5M9 WILD-TYPE                                     40             27
                 vv
clus              LIFELONG NON-SMOKER
  OR5M9 MUTATED                     0
  OR5M9 WILD-TYPE                   8
D59V13, multiclass
                                             clus
vv                                            OR5M9 MUTATED OR5M9 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D59V14, continuous

Clustering(60) Variable = SLC17A8 MUTATION ANALYSIS
D60V1, survival
                   sevent
clus2                0  1
  SLC17A8 MUTATED    6  7
  SLC17A8 WILD-TYPE 91 63
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
               13               154 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
                7                63 
$`SLC17A8 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-21-5782 TCGA-22-4613 TCGA-22-5473 TCGA-22-5491 
       79.46        28.34        31.63        11.77        63.52        56.32 
TCGA-34-5231 TCGA-34-5929 TCGA-37-3783 TCGA-37-4141 TCGA-51-4080 TCGA-60-2726 
       50.24         4.96         3.95         0.39         0.39        11.77 
TCGA-66-2787 
       40.01 

$`SLC17A8 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       19.30        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 
       71.34        11.74        30.08        62.86        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 
       14.07        19.76         2.63        61.61        32.84        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        5.52         0.43         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       24.10        22.78         1.22        23.64        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
             0.39              0.10 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
            79.46            173.79 
  SLC17A8 MUTATED SLC17A8 WILD-TYPE 
            28.34             17.42 
[1] "0.4 - 79.5 (28.3)"  "0.1 - 173.8 (17.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED"   "SLC17A8 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED"   "SLC17A8 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED"   "SLC17A8 MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"SLC17A8 WILD-TYPE"   "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
  "SLC17A8 MUTATED" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" "SLC17A8 WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
D60V3, binary
                   cls
clus                  0   1
  SLC17A8 MUTATED     4   9
  SLC17A8 WILD-TYPE  43 122
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC17A8 MUTATED      4    9
  SLC17A8 WILD-TYPE   43  122
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  FEMALE               4                43
  MALE                 9               122
D60V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SLC17A8 MUTATED                                       2
  SLC17A8 WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SLC17A8 MUTATED                                        0
  SLC17A8 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLC17A8 MUTATED                                                            11
  SLC17A8 WILD-TYPE                                                         161
D60V5, multiclass
                                                             clus
vv                                                            SLC17A8 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              11
                                                             clus
vv                                                            SLC17A8 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               161
                   vv
clus                 T1  T2  T3  T4
  SLC17A8 MUTATED     6   4   2   1
  SLC17A8 WILD-TYPE  30 112  12  11
D60V6, multiclass
    clus
vv   SLC17A8 MUTATED SLC17A8 WILD-TYPE
  T1               6                30
  T2               4               112
  T3               2                12
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  SLC17A8 MUTATED     9   3   1   0
  SLC17A8 WILD-TYPE 108  36  16   5
D60V7, multiclass
    clus
vv   SLC17A8 MUTATED SLC17A8 WILD-TYPE
  N0               9               108
  N1               3                36
  N2               1                16
  N3               0                 5
                   vv
clus                 M0  M1  MX
  SLC17A8 MUTATED    12   0   0
  SLC17A8 WILD-TYPE 153   3   6
D60V8, multiclass
    clus
vv   SLC17A8 MUTATED SLC17A8 WILD-TYPE
  M0              12               153
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  SLC17A8 MUTATED    8  2      2
  SLC17A8 WILD-TYPE 89 36     39
D60V9, multiclass
        clus
vv       SLC17A8 MUTATED SLC17A8 WILD-TYPE
  I                    8                89
  II                   2                36
  III+IV               2                39
D60V10, binary
                   cls
clus                  0   1
  SLC17A8 MUTATED     0  13
  SLC17A8 WILD-TYPE   4 161
[1] "tbl2"
                   cls
clus                [,1] [,2]
  SLC17A8 MUTATED      0   13
  SLC17A8 WILD-TYPE    4  161
     clus
vv    SLC17A8 MUTATED SLC17A8 WILD-TYPE
  NO                0                 4
  YES              13               161
D60V11, continuous
D60V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SLC17A8 MUTATED                                             4
  SLC17A8 WILD-TYPE                                          90
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SLC17A8 MUTATED                                        5              1
  SLC17A8 WILD-TYPE                                     38             27
                   vv
clus                LIFELONG NON-SMOKER
  SLC17A8 MUTATED                     2
  SLC17A8 WILD-TYPE                   6
D60V13, multiclass
                                             clus
vv                                            SLC17A8 MUTATED SLC17A8 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    5                38
  CURRENT SMOKER                                            1                27
  LIFELONG NON-SMOKER                                       2                 6
D60V14, continuous

Clustering(61) Variable = TECRL MUTATION ANALYSIS
D61V1, survival
                 sevent
clus2              0  1
  TECRL MUTATED    6  3
  TECRL WILD-TYPE 91 67
  TECRL MUTATED TECRL WILD-TYPE 
              9             158 
  TECRL MUTATED TECRL WILD-TYPE 
              3              67 
$`TECRL MUTATED`
TCGA-22-4599 TCGA-33-6737 TCGA-37-4141 TCGA-39-5024 TCGA-39-5039 TCGA-43-6143 
       38.17        19.76         0.39        70.03        17.88         7.00 
TCGA-43-6770 TCGA-60-2708 TCGA-66-2756 
        2.79        68.45         0.99 

$`TECRL WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        55.17        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6771 
       18.08        11.57        18.84         8.48         6.02         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  TECRL MUTATED TECRL WILD-TYPE 
           0.39            0.10 
  TECRL MUTATED TECRL WILD-TYPE 
          70.03          173.79 
  TECRL MUTATED TECRL WILD-TYPE 
          17.88           17.52 
[1] "0.4 - 70.0 (17.9)"  "0.1 - 173.8 (17.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TECRL WILD-TYPE"   "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE"   "TECRL MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "TECRL MUTATED" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
[1] "hr=" "1.3"
D61V2, continuous
D61V3, binary
                 cls
clus                0   1
  TECRL MUTATED     5   4
  TECRL WILD-TYPE  42 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TECRL MUTATED      5    4
  TECRL WILD-TYPE   42  127
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  FEMALE             5              42
  MALE               4             127
D61V4, continuous
[1] "Remove cluster labels:" "TECRL MUTATED"         
clus
  TECRL MUTATED TECRL WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4601      TCGA-22-4604 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"TECRL WILD-TYPE" "TECRL WILD-TYPE" "TECRL WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TECRL MUTATED                                       1
  TECRL WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TECRL MUTATED                                        0
  TECRL WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TECRL MUTATED                                                             8
  TECRL WILD-TYPE                                                         164
D61V5, multiclass
                                                             clus
vv                                                            TECRL MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            TECRL WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  TECRL MUTATED     1   7   0   1
  TECRL WILD-TYPE  35 109  14  11
D61V6, multiclass
    clus
vv   TECRL MUTATED TECRL WILD-TYPE
  T1             1              35
  T2             7             109
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  TECRL MUTATED     6   1   2   0
  TECRL WILD-TYPE 111  38  15   5
D61V7, multiclass
    clus
vv   TECRL MUTATED TECRL WILD-TYPE
  N0             6             111
  N1             1              38
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  TECRL MUTATED     8   0   1
  TECRL WILD-TYPE 157   3   5
D61V8, multiclass
    clus
vv   TECRL MUTATED TECRL WILD-TYPE
  M0             8             157
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  TECRL MUTATED    4  2      3
  TECRL WILD-TYPE 93 36     38
D61V9, multiclass
        clus
vv       TECRL MUTATED TECRL WILD-TYPE
  I                  4              93
  II                 2              36
  III+IV             3              38
D61V10, binary
                 cls
clus                0   1
  TECRL MUTATED     0   9
  TECRL WILD-TYPE   4 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TECRL MUTATED      0    9
  TECRL WILD-TYPE    4  165
     clus
vv    TECRL MUTATED TECRL WILD-TYPE
  NO              0               4
  YES             9             165
D61V11, continuous
D61V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TECRL MUTATED                                             5
  TECRL WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TECRL MUTATED                                        1              2
  TECRL WILD-TYPE                                     42             26
                 vv
clus              LIFELONG NON-SMOKER
  TECRL MUTATED                     1
  TECRL WILD-TYPE                   7
D61V13, multiclass
                                             clus
vv                                            TECRL MUTATED TECRL WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     1               7
D61V14, continuous

Clustering(62) Variable = OR4D5 MUTATION ANALYSIS
D62V1, survival
                 sevent
clus2              0  1
  OR4D5 MUTATED    6  2
  OR4D5 WILD-TYPE 91 68
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              8             159 
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              2              68 
$`OR4D5 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-21-5786 TCGA-22-4613 TCGA-34-2596 TCGA-39-5016 
       79.46        28.34        21.57        11.77         2.63        74.07 
TCGA-43-3394 TCGA-66-2754 
       11.57         2.01 

$`OR4D5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       19.30        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        14.07        19.76        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 
        7.82         6.81         0.39         3.39        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR4D5 MUTATED OR4D5 WILD-TYPE 
           2.01            0.10 
  OR4D5 MUTATED OR4D5 WILD-TYPE 
          79.46          173.79 
  OR4D5 MUTATED OR4D5 WILD-TYPE 
          16.67           17.88 
[1] "2.0 - 79.5 (16.7)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "OR4D5 MUTATED" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE"   "OR4D5 MUTATED" "OR4D5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
[1] "hr=" "2"  
D62V2, continuous
D62V3, binary
                 cls
clus                0   1
  OR4D5 MUTATED     1   8
  OR4D5 WILD-TYPE  46 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4D5 MUTATED      1    8
  OR4D5 WILD-TYPE   46  123
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  FEMALE             1              46
  MALE               8             123
D62V4, continuous
[1] "Remove cluster labels:" "OR4D5 MUTATED"         
clus
  OR4D5 MUTATED OR4D5 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" "OR4D5 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR4D5 MUTATED                                       2
  OR4D5 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR4D5 MUTATED                                        0
  OR4D5 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4D5 MUTATED                                                             7
  OR4D5 WILD-TYPE                                                         165
D62V5, multiclass
                                                             clus
vv                                                            OR4D5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR4D5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  OR4D5 MUTATED     2   7   0   0
  OR4D5 WILD-TYPE  34 109  14  12
D62V6, multiclass
    clus
vv   OR4D5 MUTATED OR4D5 WILD-TYPE
  T1             2              34
  T2             7             109
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR4D5 MUTATED     4   4   1   0
  OR4D5 WILD-TYPE 113  35  16   5
D62V7, multiclass
    clus
vv   OR4D5 MUTATED OR4D5 WILD-TYPE
  N0             4             113
  N1             4              35
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR4D5 MUTATED     9   0   0
  OR4D5 WILD-TYPE 156   3   6
D62V8, multiclass
    clus
vv   OR4D5 MUTATED OR4D5 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR4D5 MUTATED    3  4      1
  OR4D5 WILD-TYPE 94 34     40
D62V9, multiclass
        clus
vv       OR4D5 MUTATED OR4D5 WILD-TYPE
  I                  3              94
  II                 4              34
  III+IV             1              40
D62V10, binary
                 cls
clus                0   1
  OR4D5 MUTATED     0   9
  OR4D5 WILD-TYPE   4 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4D5 MUTATED      0    9
  OR4D5 WILD-TYPE    4  165
     clus
vv    OR4D5 MUTATED OR4D5 WILD-TYPE
  NO              0               4
  YES             9             165
D62V11, continuous
D62V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4D5 MUTATED                                             3
  OR4D5 WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4D5 MUTATED                                        4              2
  OR4D5 WILD-TYPE                                     39             26
                 vv
clus              LIFELONG NON-SMOKER
  OR4D5 MUTATED                     0
  OR4D5 WILD-TYPE                   8
D62V13, multiclass
                                             clus
vv                                            OR4D5 MUTATED OR4D5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              39
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D62V14, continuous

Clustering(63) Variable = POTEG MUTATION ANALYSIS
D63V1, survival
                 sevent
clus2              0  1
  POTEG MUTATED    5  4
  POTEG WILD-TYPE 92 66
  POTEG MUTATED POTEG WILD-TYPE 
              9             158 
  POTEG MUTATED POTEG WILD-TYPE 
              4              66 
$`POTEG MUTATED`
TCGA-18-3416 TCGA-21-1070 TCGA-21-5782 TCGA-22-5480 TCGA-39-5016 TCGA-39-5019 
       28.34       115.59        31.63        71.34        74.07        44.71 
TCGA-39-5028 TCGA-60-2726 TCGA-66-2756 
        1.71        11.77         0.99 

$`POTEG WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55         9.30        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5021 
        0.43         7.82         6.81         0.39         3.39        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
        1.22        23.64        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  POTEG MUTATED POTEG WILD-TYPE 
           0.99            0.10 
  POTEG MUTATED POTEG WILD-TYPE 
         115.59          173.79 
  POTEG MUTATED POTEG WILD-TYPE 
          31.63           16.78 
[1] "1.0 - 115.6 (31.6)" "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"POTEG WILD-TYPE"   "POTEG MUTATED"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"POTEG WILD-TYPE"   "POTEG MUTATED"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"POTEG WILD-TYPE"   "POTEG MUTATED"   "POTEG MUTATED" "POTEG WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE"   "POTEG MUTATED" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"POTEG WILD-TYPE"   "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "POTEG MUTATED" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"POTEG WILD-TYPE" "POTEG WILD-TYPE" "POTEG WILD-TYPE" 
[1] "hr=" "1.6"
D63V2, continuous
D63V3, binary
                 cls
clus                0   1
  POTEG MUTATED     3   7
  POTEG WILD-TYPE  44 124
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEG MUTATED      3    7
  POTEG WILD-TYPE   44  124
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  FEMALE             3              44
  MALE               7             124
D63V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  POTEG MUTATED                                       1
  POTEG WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  POTEG MUTATED                                        0
  POTEG WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  POTEG MUTATED                                                             9
  POTEG WILD-TYPE                                                         163
D63V5, multiclass
                                                             clus
vv                                                            POTEG MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            POTEG WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                 vv
clus               T1  T2  T3  T4
  POTEG MUTATED     1   5   1   3
  POTEG WILD-TYPE  35 111  13   9
D63V6, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  T1             1              35
  T2             5             111
  T3             1              13
  T4             3               9
                 vv
clus               N0  N1  N2  N3
  POTEG MUTATED     6   4   0   0
  POTEG WILD-TYPE 111  35  17   5
D63V7, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  N0             6             111
  N1             4              35
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  POTEG MUTATED    10   0   0
  POTEG WILD-TYPE 155   3   6
D63V8, multiclass
    clus
vv   POTEG MUTATED POTEG WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  POTEG MUTATED    3  4      3
  POTEG WILD-TYPE 94 34     38
D63V9, multiclass
        clus
vv       POTEG MUTATED POTEG WILD-TYPE
  I                  3              94
  II                 4              34
  III+IV             3              38
D63V10, binary
                 cls
clus                0   1
  POTEG MUTATED     0  10
  POTEG WILD-TYPE   4 164
[1] "tbl2"
                 cls
clus              [,1] [,2]
  POTEG MUTATED      0   10
  POTEG WILD-TYPE    4  164
     clus
vv    POTEG MUTATED POTEG WILD-TYPE
  NO              0               4
  YES            10             164
D63V11, continuous
D63V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  POTEG MUTATED                                             7
  POTEG WILD-TYPE                                          87
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  POTEG MUTATED                                        3              0
  POTEG WILD-TYPE                                     40             28
                 vv
clus              LIFELONG NON-SMOKER
  POTEG MUTATED                     0
  POTEG WILD-TYPE                   8
D63V13, multiclass
                                             clus
vv                                            POTEG MUTATED POTEG WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D63V14, continuous

Clustering(64) Variable = TEX13A MUTATION ANALYSIS
D64V1, survival
                  sevent
clus2               0  1
  TEX13A MUTATED    5  3
  TEX13A WILD-TYPE 92 67
  TEX13A MUTATED TEX13A WILD-TYPE 
               8              159 
  TEX13A MUTATED TEX13A WILD-TYPE 
               3               67 
$`TEX13A MUTATED`
TCGA-21-1070 TCGA-22-1016 TCGA-22-4613 TCGA-43-3394 TCGA-43-6770 TCGA-66-2767 
      115.59        27.02        11.77        11.57         2.79         2.01 
TCGA-66-2791 TCGA-66-2795 
        5.03         4.01 

$`TEX13A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
        0.79        17.88        18.08        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.02         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  TEX13A MUTATED TEX13A WILD-TYPE 
            2.01             0.10 
  TEX13A MUTATED TEX13A WILD-TYPE 
          115.59           173.79 
  TEX13A MUTATED TEX13A WILD-TYPE 
            8.30            18.84 
[1] "2.0 - 115.6 (8.3)"  "0.1 - 173.8 (18.8)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
  "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"TEX13A WILD-TYPE"   "TEX13A MUTATED" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE"   "TEX13A MUTATED" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
[1] "hr=" "1.1"
D64V2, continuous
D64V3, binary
                  cls
clus                 0   1
  TEX13A MUTATED     3   5
  TEX13A WILD-TYPE  44 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TEX13A MUTATED      3    5
  TEX13A WILD-TYPE   44  126
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  FEMALE              3               44
  MALE                5              126
D64V4, continuous
[1] "Remove cluster labels:" "TEX13A MUTATED"        
clus
  TEX13A MUTATED TEX13A WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-4604       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"TEX13A WILD-TYPE" "TEX13A WILD-TYPE" "TEX13A WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TEX13A MUTATED                                       0
  TEX13A WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TEX13A MUTATED                                        0
  TEX13A WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TEX13A MUTATED                                                             8
  TEX13A WILD-TYPE                                                         164
D64V5, multiclass
                                                             clus
vv                                                            TEX13A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            TEX13A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
                  vv
clus                T1  T2  T3  T4
  TEX13A MUTATED     1   5   1   1
  TEX13A WILD-TYPE  35 111  13  11
D64V6, multiclass
    clus
vv   TEX13A MUTATED TEX13A WILD-TYPE
  T1              1               35
  T2              5              111
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  TEX13A MUTATED     5   1   0   2
  TEX13A WILD-TYPE 112  38  17   3
D64V7, multiclass
    clus
vv   TEX13A MUTATED TEX13A WILD-TYPE
  N0              5              112
  N1              1               38
  N2              0               17
  N3              2                3
                  vv
clus                M0  M1  MX
  TEX13A MUTATED     7   0   1
  TEX13A WILD-TYPE 158   3   5
D64V8, multiclass
    clus
vv   TEX13A MUTATED TEX13A WILD-TYPE
  M0              7              158
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  TEX13A MUTATED    4  0      4
  TEX13A WILD-TYPE 93 38     37
D64V9, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  I                   4               93
  II                  0               38
  III+IV              4               37
D64V10, binary
                  cls
clus                 0   1
  TEX13A MUTATED     0   8
  TEX13A WILD-TYPE   4 166
[1] "tbl2"
                  cls
clus               [,1] [,2]
  TEX13A MUTATED      0    8
  TEX13A WILD-TYPE    4  166
     clus
vv    TEX13A MUTATED TEX13A WILD-TYPE
  NO               0                4
  YES              8              166
D64V11, continuous
D64V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TEX13A MUTATED                                             4
  TEX13A WILD-TYPE                                          90
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TEX13A MUTATED                                        2              2
  TEX13A WILD-TYPE                                     41             26
                  vv
clus               LIFELONG NON-SMOKER
  TEX13A MUTATED                     0
  TEX13A WILD-TYPE                   8
D64V13, multiclass
                                             clus
vv                                            TEX13A MUTATED TEX13A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D64V14, continuous

Clustering(65) Variable = HIST2H2BE MUTATION ANALYSIS
D65V1, survival
                     sevent
clus2                  0  1
  HIST2H2BE MUTATED    1  2
  HIST2H2BE WILD-TYPE 96 68
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  3                 164 
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  2                  68 
$`HIST2H2BE MUTATED`
TCGA-18-3414 TCGA-22-5477 TCGA-60-2723 
       13.02        44.22        22.78 

$`HIST2H2BE WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       63.52        14.60         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        24.10         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
              13.02                0.10 
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
              44.22              173.79 
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
              22.78               17.42 
[1] "13.0 - 44.2 (22.8)" "0.1 - 173.8 (17.4)"
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"HIST2H2BE WILD-TYPE"   "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"HIST2H2BE WILD-TYPE"   "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"HIST2H2BE WILD-TYPE"   "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
  "HIST2H2BE MUTATED" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
[1] "hr=" "1.4"
D65V2, continuous
D65V3, binary
                     cls
clus                    0   1
  HIST2H2BE MUTATED     1   2
  HIST2H2BE WILD-TYPE  46 129
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST2H2BE MUTATED      1    2
  HIST2H2BE WILD-TYPE   46  129
        clus
vv       HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  FEMALE                 1                  46
  MALE                   2                 129
D65V4, continuous
[1] "Remove cluster labels:" "HIST2H2BE MUTATED"     
clus
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  2                  34 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3410 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3419          TCGA-21-5782          TCGA-21-5787 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4613          TCGA-22-5472          TCGA-22-5473 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5474          TCGA-22-5478          TCGA-22-5480 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-34-5234 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-4133          TCGA-37-4135          TCGA-37-5819 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2698          TCGA-60-2712          TCGA-60-2715 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2725          TCGA-60-2726          TCGA-70-6722 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-70-6723 
"HIST2H2BE WILD-TYPE" 
                     vv
clus                  LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HIST2H2BE MUTATED                                       0
  HIST2H2BE WILD-TYPE                                     5
                     vv
clus                  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HIST2H2BE MUTATED                                        0
  HIST2H2BE WILD-TYPE                                      1
                     vv
clus                  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HIST2H2BE MUTATED                                                             3
  HIST2H2BE WILD-TYPE                                                         169
D65V5, multiclass
                                                             clus
vv                                                            HIST2H2BE MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 3
                                                             clus
vv                                                            HIST2H2BE WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                         5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                        1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 169
                     vv
clus                   T1  T2  T3  T4
  HIST2H2BE MUTATED     1   1   0   1
  HIST2H2BE WILD-TYPE  35 115  14  11
D65V6, multiclass
    clus
vv   HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  T1                 1                  35
  T2                 1                 115
  T3                 0                  14
  T4                 1                  11
                     vv
clus                   N0  N1  N2  N3
  HIST2H2BE MUTATED     2   1   0   0
  HIST2H2BE WILD-TYPE 115  38  17   5
D65V7, multiclass
    clus
vv   HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  N0                 2                 115
  N1                 1                  38
  N2                 0                  17
  N3                 0                   5
                     vv
clus                   M0  M1  MX
  HIST2H2BE MUTATED     2   1   0
  HIST2H2BE WILD-TYPE 163   2   6
D65V8, multiclass
    clus
vv   HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  M0                 2                 163
  M1                 1                   2
  MX                 0                   6
                     vv
clus                   I II III+IV
  HIST2H2BE MUTATED    2  0      1
  HIST2H2BE WILD-TYPE 95 38     40
D65V9, multiclass
        clus
vv       HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  I                      2                  95
  II                     0                  38
  III+IV                 1                  40
D65V10, binary
                     cls
clus                    0   1
  HIST2H2BE MUTATED     0   3
  HIST2H2BE WILD-TYPE   4 171
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  HIST2H2BE MUTATED      0    3
  HIST2H2BE WILD-TYPE    4  171
     clus
vv    HIST2H2BE MUTATED HIST2H2BE WILD-TYPE
  NO                  0                   4
  YES                 3                 171
D65V11, continuous
D65V12, continuous
[1] "Remove cluster labels:" "HIST2H2BE MUTATED"     
clus
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  2                 125 
         TCGA-18-3407          TCGA-18-3408          TCGA-18-3409 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3415          TCGA-18-3417 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-3419          TCGA-18-3421          TCGA-18-4086 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-18-4721          TCGA-21-1070          TCGA-21-1076 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5787          TCGA-22-1002 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1012          TCGA-22-1016          TCGA-22-4593 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5478          TCGA-22-5480          TCGA-22-5482 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5489          TCGA-22-5492          TCGA-33-4533 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4547          TCGA-33-4583          TCGA-33-4586 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-2596          TCGA-34-2600          TCGA-34-2608 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5234          TCGA-34-5241          TCGA-34-5928 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5929          TCGA-37-4133          TCGA-37-4135 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-5819          TCGA-39-5016          TCGA-39-5021 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5039          TCGA-43-2578          TCGA-43-3920 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-5668          TCGA-43-6143          TCGA-43-6647 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6771          TCGA-46-6025          TCGA-46-6026 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-51-4079          TCGA-51-4080          TCGA-56-1622 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-5897          TCGA-56-6545          TCGA-56-6546 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2698          TCGA-60-2707          TCGA-60-2708 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2715          TCGA-60-2719          TCGA-60-2720 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2721          TCGA-60-2722          TCGA-60-2724 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2725          TCGA-60-2726          TCGA-63-5128 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-63-5131          TCGA-63-6202          TCGA-66-2727 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2734          TCGA-66-2742          TCGA-66-2744 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2754          TCGA-66-2755          TCGA-66-2756 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2757          TCGA-66-2758          TCGA-66-2759 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2763          TCGA-66-2765          TCGA-66-2766 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2767          TCGA-66-2770          TCGA-66-2771 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
                     vv
clus                  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HIST2H2BE MUTATED                                             2
  HIST2H2BE WILD-TYPE                                          92
                     vv
clus                  CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HIST2H2BE MUTATED                                        0              1
  HIST2H2BE WILD-TYPE                                     43             27
                     vv
clus                  LIFELONG NON-SMOKER
  HIST2H2BE MUTATED                     0
  HIST2H2BE WILD-TYPE                   8
D65V13, multiclass
                                             clus
vv                                            HIST2H2BE MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 2
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      0
  CURRENT SMOKER                                              1
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            HIST2H2BE WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       43
  CURRENT SMOKER                                               27
  LIFELONG NON-SMOKER                                           8
D65V14, continuous
[1] "Remove cluster labels:" "HIST2H2BE MUTATED"     
clus
  HIST2H2BE MUTATED HIST2H2BE WILD-TYPE 
                  1                 104 
         TCGA-18-3406          TCGA-18-3417          TCGA-21-1078 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5786          TCGA-21-5787 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-0944          TCGA-22-1002          TCGA-22-1011 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-1012          TCGA-22-1016          TCGA-22-4591 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-4593          TCGA-22-4607          TCGA-22-4613 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-22-5480          TCGA-22-5482          TCGA-22-5492 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4547          TCGA-33-4582 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-33-4583          TCGA-33-4586          TCGA-34-5240 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-34-5241          TCGA-37-4133          TCGA-37-4135 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-37-5819          TCGA-39-5021          TCGA-39-5022 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5024          TCGA-39-5027          TCGA-39-5028 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5029          TCGA-39-5030          TCGA-39-5031 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5035          TCGA-39-5036          TCGA-39-5037 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-39-5039          TCGA-43-2578          TCGA-43-3394 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-3920          TCGA-43-6143          TCGA-43-6647 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-43-6770          TCGA-43-6771          TCGA-56-1622 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-56-5898          TCGA-56-6545          TCGA-56-6546 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2724 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-60-2725          TCGA-60-2726          TCGA-63-6202 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2727          TCGA-66-2734          TCGA-66-2742 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2744          TCGA-66-2754          TCGA-66-2755 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2756          TCGA-66-2757          TCGA-66-2758 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2759          TCGA-66-2763          TCGA-66-2765 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2766          TCGA-66-2767          TCGA-66-2770 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2771          TCGA-66-2773          TCGA-66-2777 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2778          TCGA-66-2780          TCGA-66-2781 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2782          TCGA-66-2783          TCGA-66-2786 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"HIST2H2BE WILD-TYPE" "HIST2H2BE WILD-TYPE" 

Clustering(66) Variable = KCNJ3 MUTATION ANALYSIS
D66V1, survival
                 sevent
clus2              0  1
  KCNJ3 MUTATED    7  4
  KCNJ3 WILD-TYPE 90 66
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
             11             156 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
              4              66 
$`KCNJ3 MUTATED`
TCGA-22-1012 TCGA-22-4599 TCGA-22-4604 TCGA-33-4566 TCGA-37-3789 TCGA-43-2578 
       14.10        38.17        13.12       173.79         0.43        18.08 
TCGA-60-2709 TCGA-66-2759 TCGA-66-2765 TCGA-66-2770 TCGA-66-2785 
       49.48        25.02         2.01        23.01         1.94 

$`KCNJ3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
        1.74        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.70        68.45        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 
        0.99         1.02         2.01         2.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
           0.43            0.10 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
         173.79          141.34 
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
          18.08           17.42 
[1] "0.4 - 173.8 (18.1)" "0.1 - 141.3 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE"   "KCNJ3 MUTATED" "KCNJ3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
[1] "hr=" "1.7"
D66V2, continuous
D66V3, binary
                 cls
clus                0   1
  KCNJ3 MUTATED     3   8
  KCNJ3 WILD-TYPE  44 123
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNJ3 MUTATED      3    8
  KCNJ3 WILD-TYPE   44  123
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  FEMALE             3              44
  MALE               8             123
D66V4, continuous
[1] "Remove cluster labels:" "KCNJ3 MUTATED"         
clus
  KCNJ3 MUTATED KCNJ3 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4601      TCGA-22-4613 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"KCNJ3 WILD-TYPE" "KCNJ3 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  KCNJ3 MUTATED                                       0
  KCNJ3 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  KCNJ3 MUTATED                                        0
  KCNJ3 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KCNJ3 MUTATED                                                            11
  KCNJ3 WILD-TYPE                                                         161
D66V5, multiclass
                                                             clus
vv                                                            KCNJ3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            KCNJ3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
                 vv
clus               T1  T2  T3  T4
  KCNJ3 MUTATED     1  10   0   0
  KCNJ3 WILD-TYPE  35 106  14  12
D66V6, multiclass
    clus
vv   KCNJ3 MUTATED KCNJ3 WILD-TYPE
  T1             1              35
  T2            10             106
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  KCNJ3 MUTATED     9   1   1   0
  KCNJ3 WILD-TYPE 108  38  16   5
D66V7, multiclass
    clus
vv   KCNJ3 MUTATED KCNJ3 WILD-TYPE
  N0             9             108
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  KCNJ3 MUTATED     9   0   1
  KCNJ3 WILD-TYPE 156   3   5
D66V8, multiclass
    clus
vv   KCNJ3 MUTATED KCNJ3 WILD-TYPE
  M0             9             156
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  KCNJ3 MUTATED    9  1      1
  KCNJ3 WILD-TYPE 88 37     40
D66V9, multiclass
        clus
vv       KCNJ3 MUTATED KCNJ3 WILD-TYPE
  I                  9              88
  II                 1              37
  III+IV             1              40
D66V10, binary
                 cls
clus                0   1
  KCNJ3 MUTATED     0  11
  KCNJ3 WILD-TYPE   4 163
[1] "tbl2"
                 cls
clus              [,1] [,2]
  KCNJ3 MUTATED      0   11
  KCNJ3 WILD-TYPE    4  163
     clus
vv    KCNJ3 MUTATED KCNJ3 WILD-TYPE
  NO              0               4
  YES            11             163
D66V11, continuous
D66V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KCNJ3 MUTATED                                             4
  KCNJ3 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KCNJ3 MUTATED                                        2              4
  KCNJ3 WILD-TYPE                                     41             24
                 vv
clus              LIFELONG NON-SMOKER
  KCNJ3 MUTATED                     1
  KCNJ3 WILD-TYPE                   7
D66V13, multiclass
                                             clus
vv                                            KCNJ3 MUTATED KCNJ3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          4              24
  LIFELONG NON-SMOKER                                     1               7
D66V14, continuous

Clustering(67) Variable = NUCB2 MUTATION ANALYSIS
D67V1, survival
                 sevent
clus2              0  1
  NUCB2 MUTATED    3  3
  NUCB2 WILD-TYPE 94 67
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              6             161 
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              3              67 
$`NUCB2 MUTATED`
TCGA-18-3407 TCGA-22-4599 TCGA-43-6647 TCGA-66-2767 TCGA-66-2791 TCGA-85-6561 
        4.47        38.17         6.02         2.01         5.03         0.79 

$`NUCB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         1.02         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 
        1.94        25.97        40.01        22.98         4.04        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       10.06        54.08         4.01        49.05         0.36 

  NUCB2 MUTATED NUCB2 WILD-TYPE 
           0.79            0.10 
  NUCB2 MUTATED NUCB2 WILD-TYPE 
          38.17          173.79 
  NUCB2 MUTATED NUCB2 WILD-TYPE 
           4.75           18.84 
[1] "0.8 - 38.2 (4.8)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"NUCB2 WILD-TYPE"   "NUCB2 MUTATED" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
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"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE"   "NUCB2 MUTATED" 
[1] "hr=" "3"  
D67V2, continuous
D67V3, binary
                 cls
clus                0   1
  NUCB2 MUTATED     2   4
  NUCB2 WILD-TYPE  45 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NUCB2 MUTATED      2    4
  NUCB2 WILD-TYPE   45  127
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  FEMALE             2              45
  MALE               4             127
D67V4, continuous
[1] "Remove cluster labels:" "NUCB2 MUTATED"         
clus
  NUCB2 MUTATED NUCB2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3410      TCGA-18-3414      TCGA-18-3419 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"NUCB2 WILD-TYPE" "NUCB2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  NUCB2 MUTATED                                       0
  NUCB2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  NUCB2 MUTATED                                        0
  NUCB2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  NUCB2 MUTATED                                                             6
  NUCB2 WILD-TYPE                                                         166
D67V5, multiclass
                                                             clus
vv                                                            NUCB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            NUCB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  NUCB2 MUTATED     0   6   0   0
  NUCB2 WILD-TYPE  36 110  14  12
D67V6, multiclass
    clus
vv   NUCB2 MUTATED NUCB2 WILD-TYPE
  T1             0              36
  T2             6             110
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  NUCB2 MUTATED     3   1   0   2
  NUCB2 WILD-TYPE 114  38  17   3
D67V7, multiclass
    clus
vv   NUCB2 MUTATED NUCB2 WILD-TYPE
  N0             3             114
  N1             1              38
  N2             0              17
  N3             2               3
                 vv
clus               M0  M1  MX
  NUCB2 MUTATED     5   0   1
  NUCB2 WILD-TYPE 160   3   5
D67V8, multiclass
    clus
vv   NUCB2 MUTATED NUCB2 WILD-TYPE
  M0             5             160
  M1             0               3
  MX             1               5
                 vv
clus               I II III+IV
  NUCB2 MUTATED    2  2      2
  NUCB2 WILD-TYPE 95 36     39
D67V9, multiclass
        clus
vv       NUCB2 MUTATED NUCB2 WILD-TYPE
  I                  2              95
  II                 2              36
  III+IV             2              39
D67V10, binary
                 cls
clus                0   1
  NUCB2 MUTATED     0   6
  NUCB2 WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  NUCB2 MUTATED      0    6
  NUCB2 WILD-TYPE    4  168
     clus
vv    NUCB2 MUTATED NUCB2 WILD-TYPE
  NO              0               4
  YES             6             168
D67V11, continuous
D67V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  NUCB2 MUTATED                                             4
  NUCB2 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  NUCB2 MUTATED                                        1              1
  NUCB2 WILD-TYPE                                     42             27
                 vv
clus              LIFELONG NON-SMOKER
  NUCB2 MUTATED                     0
  NUCB2 WILD-TYPE                   8
D67V13, multiclass
                                             clus
vv                                            NUCB2 MUTATED NUCB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D67V14, continuous

Clustering(68) Variable = TRHDE MUTATION ANALYSIS
D68V1, survival
                 sevent
clus2              0  1
  TRHDE MUTATED   11  3
  TRHDE WILD-TYPE 86 67
  TRHDE MUTATED TRHDE WILD-TYPE 
             14             153 
  TRHDE MUTATED TRHDE WILD-TYPE 
              3              67 
$`TRHDE MUTATED`
TCGA-18-3409 TCGA-18-3417 TCGA-21-5786 TCGA-22-5473 TCGA-33-4586 TCGA-37-3783 
       79.46        24.92        21.57        63.52        14.07         3.95 
TCGA-37-4141 TCGA-66-2754 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.39         2.01         0.99         2.01         1.02         2.01 
TCGA-66-2782 TCGA-66-2787 
       12.00        40.01 

$`TRHDE WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 
       14.07        22.95         5.52         4.96         0.43         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        6.81         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       18.84         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        0.99         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        24.95         1.94        25.97        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  TRHDE MUTATED TRHDE WILD-TYPE 
           0.39            0.10 
  TRHDE MUTATED TRHDE WILD-TYPE 
          79.46          173.79 
  TRHDE MUTATED TRHDE WILD-TYPE 
          7.975          18.840 
[1] "0.4 - 79.5 (8.0)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE"   "TRHDE MUTATED" "TRHDE WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED"   "TRHDE MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "TRHDE MUTATED" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
[1] "hr=" "1.5"
D68V2, continuous
D68V3, binary
                 cls
clus                0   1
  TRHDE MUTATED     2  12
  TRHDE WILD-TYPE  45 119
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRHDE MUTATED      2   12
  TRHDE WILD-TYPE   45  119
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  FEMALE             2              45
  MALE              12             119
D68V4, continuous
[1] "Remove cluster labels:" "TRHDE MUTATED"         
clus
  TRHDE MUTATED TRHDE WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"TRHDE WILD-TYPE" "TRHDE WILD-TYPE" "TRHDE WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TRHDE MUTATED                                       1
  TRHDE WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TRHDE MUTATED                                        0
  TRHDE WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TRHDE MUTATED                                                            13
  TRHDE WILD-TYPE                                                         159
D68V5, multiclass
                                                             clus
vv                                                            TRHDE MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            TRHDE WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
                 vv
clus               T1  T2  T3  T4
  TRHDE MUTATED     3   8   3   0
  TRHDE WILD-TYPE  33 108  11  12
D68V6, multiclass
    clus
vv   TRHDE MUTATED TRHDE WILD-TYPE
  T1             3              33
  T2             8             108
  T3             3              11
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  TRHDE MUTATED     8   1   4   1
  TRHDE WILD-TYPE 109  38  13   4
D68V7, multiclass
    clus
vv   TRHDE MUTATED TRHDE WILD-TYPE
  N0             8             109
  N1             1              38
  N2             4              13
  N3             1               4
                 vv
clus               M0  M1  MX
  TRHDE MUTATED    13   1   0
  TRHDE WILD-TYPE 152   2   6
D68V8, multiclass
    clus
vv   TRHDE MUTATED TRHDE WILD-TYPE
  M0            13             152
  M1             1               2
  MX             0               6
                 vv
clus               I II III+IV
  TRHDE MUTATED    6  1      6
  TRHDE WILD-TYPE 91 37     35
D68V9, multiclass
        clus
vv       TRHDE MUTATED TRHDE WILD-TYPE
  I                  6              91
  II                 1              37
  III+IV             6              35
D68V10, binary
                 cls
clus                0   1
  TRHDE MUTATED     0  14
  TRHDE WILD-TYPE   4 160
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TRHDE MUTATED      0   14
  TRHDE WILD-TYPE    4  160
     clus
vv    TRHDE MUTATED TRHDE WILD-TYPE
  NO              0               4
  YES            14             160
D68V11, continuous
D68V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TRHDE MUTATED                                             8
  TRHDE WILD-TYPE                                          86
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TRHDE MUTATED                                        3              1
  TRHDE WILD-TYPE                                     40             27
                 vv
clus              LIFELONG NON-SMOKER
  TRHDE MUTATED                     1
  TRHDE WILD-TYPE                   7
D68V13, multiclass
                                             clus
vv                                            TRHDE MUTATED TRHDE WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D68V14, continuous

Clustering(69) Variable = OR14A16 MUTATION ANALYSIS
D69V1, survival
                   sevent
clus2                0  1
  OR14A16 MUTATED    5  4
  OR14A16 WILD-TYPE 92 66
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                9               158 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
                4                66 
$`OR14A16 MUTATED`
TCGA-18-3409 TCGA-33-4566 TCGA-33-6737 TCGA-39-5027 TCGA-51-4080 TCGA-60-2720 
       79.46       173.79        19.76        60.76         0.39         3.16 
TCGA-66-2754 TCGA-66-2789 TCGA-85-6561 
        2.01         4.04         0.79 

$`OR14A16 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 
       97.94        43.10       103.53       141.34        14.07         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        35.34        30.61        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 
       49.05         0.36 

  OR14A16 MUTATED OR14A16 WILD-TYPE 
             0.39              0.10 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
           173.79            141.34 
  OR14A16 MUTATED OR14A16 WILD-TYPE 
             4.04             17.98 
[1] "0.4 - 173.8 (4.0)"  "0.1 - 141.3 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" "OR14A16 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"OR14A16 WILD-TYPE" "OR14A16 WILD-TYPE"   "OR14A16 MUTATED" 
[1] "hr=" "1.4"
D69V2, continuous
D69V3, binary
                   cls
clus                  0   1
  OR14A16 MUTATED     2   8
  OR14A16 WILD-TYPE  45 123
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      2    8
  OR14A16 WILD-TYPE   45  123
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  FEMALE               2                45
  MALE                 8               123
D69V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR14A16 MUTATED                                       2
  OR14A16 WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR14A16 MUTATED                                        0
  OR14A16 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR14A16 MUTATED                                                             8
  OR14A16 WILD-TYPE                                                         164
D69V5, multiclass
                                                             clus
vv                                                            OR14A16 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               8
                                                             clus
vv                                                            OR14A16 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               164
                   vv
clus                 T1  T2  T3  T4
  OR14A16 MUTATED     3   6   0   1
  OR14A16 WILD-TYPE  33 110  14  11
D69V6, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  T1               3                33
  T2               6               110
  T3               0                14
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  OR14A16 MUTATED     6   1   2   1
  OR14A16 WILD-TYPE 111  38  15   4
D69V7, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  N0               6               111
  N1               1                38
  N2               2                15
  N3               1                 4
                   vv
clus                 M0  M1  MX
  OR14A16 MUTATED     9   0   0
  OR14A16 WILD-TYPE 156   3   6
D69V8, multiclass
    clus
vv   OR14A16 MUTATED OR14A16 WILD-TYPE
  M0               9               156
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  OR14A16 MUTATED    4  1      4
  OR14A16 WILD-TYPE 93 37     37
D69V9, multiclass
        clus
vv       OR14A16 MUTATED OR14A16 WILD-TYPE
  I                    4                93
  II                   1                37
  III+IV               4                37
D69V10, binary
                   cls
clus                  0   1
  OR14A16 MUTATED     0  10
  OR14A16 WILD-TYPE   4 164
[1] "tbl2"
                   cls
clus                [,1] [,2]
  OR14A16 MUTATED      0   10
  OR14A16 WILD-TYPE    4  164
     clus
vv    OR14A16 MUTATED OR14A16 WILD-TYPE
  NO                0                 4
  YES              10               164
D69V11, continuous
D69V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR14A16 MUTATED                                             7
  OR14A16 WILD-TYPE                                          87
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR14A16 MUTATED                                        1              2
  OR14A16 WILD-TYPE                                     42             26
                   vv
clus                LIFELONG NON-SMOKER
  OR14A16 MUTATED                     0
  OR14A16 WILD-TYPE                   8
D69V13, multiclass
                                             clus
vv                                            OR14A16 MUTATED OR14A16 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                 8
D69V14, continuous

Clustering(70) Variable = OR6K3 MUTATION ANALYSIS
D70V1, survival
                 sevent
clus2              0  1
  OR6K3 MUTATED    5  3
  OR6K3 WILD-TYPE 92 67
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              8             159 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
              3              67 
$`OR6K3 MUTATED`
TCGA-18-3412 TCGA-18-4083 TCGA-21-1081 TCGA-33-4583 TCGA-34-5240 TCGA-66-2757 
       11.34         6.15         9.30       141.34         7.73         0.99 
TCGA-66-2766 TCGA-66-2785 
        1.02         1.94 

$`OR6K3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR6K3 MUTATED OR6K3 WILD-TYPE 
           0.99            0.10 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
         141.34          173.79 
  OR6K3 MUTATED OR6K3 WILD-TYPE 
           6.94           19.00 
[1] "1.0 - 141.3 (6.9)"  "0.1 - 173.8 (19.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE"   "OR6K3 MUTATED" "OR6K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" "OR6K3 WILD-TYPE" 
[1] "hr=" "1.3"
D70V2, continuous
D70V3, binary
                 cls
clus                0   1
  OR6K3 MUTATED     2   6
  OR6K3 WILD-TYPE  45 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K3 MUTATED      2    6
  OR6K3 WILD-TYPE   45  125
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  FEMALE             2              45
  MALE               6             125
D70V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR6K3 MUTATED                                       1
  OR6K3 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR6K3 MUTATED                                        0
  OR6K3 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR6K3 MUTATED                                                             7
  OR6K3 WILD-TYPE                                                         165
D70V5, multiclass
                                                             clus
vv                                                            OR6K3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR6K3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  OR6K3 MUTATED     2   6   0   0
  OR6K3 WILD-TYPE  34 110  14  12
D70V6, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  T1             2              34
  T2             6             110
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR6K3 MUTATED     4   3   1   0
  OR6K3 WILD-TYPE 113  36  16   5
D70V7, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  N0             4             113
  N1             3              36
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR6K3 MUTATED     8   0   0
  OR6K3 WILD-TYPE 157   3   6
D70V8, multiclass
    clus
vv   OR6K3 MUTATED OR6K3 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR6K3 MUTATED    4  3      1
  OR6K3 WILD-TYPE 93 35     40
D70V9, multiclass
        clus
vv       OR6K3 MUTATED OR6K3 WILD-TYPE
  I                  4              93
  II                 3              35
  III+IV             1              40
D70V10, binary
                 cls
clus                0   1
  OR6K3 MUTATED     0   8
  OR6K3 WILD-TYPE   4 166
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR6K3 MUTATED      0    8
  OR6K3 WILD-TYPE    4  166
     clus
vv    OR6K3 MUTATED OR6K3 WILD-TYPE
  NO              0               4
  YES             8             166
D70V11, continuous
D70V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR6K3 MUTATED                                             5
  OR6K3 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR6K3 MUTATED                                        1              2
  OR6K3 WILD-TYPE                                     42             26
                 vv
clus              LIFELONG NON-SMOKER
  OR6K3 MUTATED                     0
  OR6K3 WILD-TYPE                   8
D70V13, multiclass
                                             clus
vv                                            OR6K3 MUTATED OR6K3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D70V14, continuous

Clustering(71) Variable = SLC6A5 MUTATION ANALYSIS
D71V1, survival
                  sevent
clus2               0  1
  SLC6A5 MUTATED    3  3
  SLC6A5 WILD-TYPE 94 67
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               6              161 
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               3               67 
$`SLC6A5 MUTATED`
TCGA-22-5472 TCGA-22-5473 TCGA-39-5036 TCGA-43-5668 TCGA-46-3768 TCGA-66-2765 
       64.90        63.52        35.64         8.48         9.96         2.01 

$`SLC6A5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 
        0.79        17.88        18.08        11.57        18.84         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.02         2.79         5.42         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         0.99         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
            2.01             0.10 
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
           64.90           173.79 
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
           22.80            17.88 
[1] "2.0 - 64.9 (22.8)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED"   "SLC6A5 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED"   "SLC6A5 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED"   "SLC6A5 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"SLC6A5 WILD-TYPE"   "SLC6A5 MUTATED" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
[1] "hr=" "1"  
D71V2, continuous
D71V3, binary
                  cls
clus                 0   1
  SLC6A5 MUTATED     0   6
  SLC6A5 WILD-TYPE  47 125
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC6A5 MUTATED      0    6
  SLC6A5 WILD-TYPE   47  125
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  FEMALE              0               47
  MALE                6              125
D71V4, continuous
[1] "Remove cluster labels:" "SLC6A5 MUTATED"        
clus
  SLC6A5 MUTATED SLC6A5 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5474       TCGA-22-5477 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"SLC6A5 WILD-TYPE" "SLC6A5 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SLC6A5 MUTATED                                       0
  SLC6A5 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SLC6A5 MUTATED                                        0
  SLC6A5 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SLC6A5 MUTATED                                                             6
  SLC6A5 WILD-TYPE                                                         166
D71V5, multiclass
                                                             clus
vv                                                            SLC6A5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            SLC6A5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
                  vv
clus                T1  T2  T3  T4
  SLC6A5 MUTATED     1   3   2   0
  SLC6A5 WILD-TYPE  35 113  12  12
D71V6, multiclass
    clus
vv   SLC6A5 MUTATED SLC6A5 WILD-TYPE
  T1              1               35
  T2              3              113
  T3              2               12
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  SLC6A5 MUTATED     4   2   0   0
  SLC6A5 WILD-TYPE 113  37  17   5
D71V7, multiclass
    clus
vv   SLC6A5 MUTATED SLC6A5 WILD-TYPE
  N0              4              113
  N1              2               37
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  SLC6A5 MUTATED     6   0   0
  SLC6A5 WILD-TYPE 159   3   6
D71V8, multiclass
    clus
vv   SLC6A5 MUTATED SLC6A5 WILD-TYPE
  M0              6              159
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  SLC6A5 MUTATED    4  1      1
  SLC6A5 WILD-TYPE 93 37     40
D71V9, multiclass
        clus
vv       SLC6A5 MUTATED SLC6A5 WILD-TYPE
  I                   4               93
  II                  1               37
  III+IV              1               40
D71V10, binary
                  cls
clus                 0   1
  SLC6A5 MUTATED     0   6
  SLC6A5 WILD-TYPE   4 168
[1] "tbl2"
                  cls
clus               [,1] [,2]
  SLC6A5 MUTATED      0    6
  SLC6A5 WILD-TYPE    4  168
     clus
vv    SLC6A5 MUTATED SLC6A5 WILD-TYPE
  NO               0                4
  YES              6              168
D71V11, continuous
D71V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SLC6A5 MUTATED                                             4
  SLC6A5 WILD-TYPE                                          90
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SLC6A5 MUTATED                                        2              0
  SLC6A5 WILD-TYPE                                     41             28
                  vv
clus               LIFELONG NON-SMOKER
  SLC6A5 MUTATED                     0
  SLC6A5 WILD-TYPE                   8
D71V13, multiclass
                                             clus
vv                                            SLC6A5 MUTATED SLC6A5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D71V14, continuous

Clustering(72) Variable = OR2AK2 MUTATION ANALYSIS
D72V1, survival
                  sevent
clus2               0  1
  OR2AK2 MUTATED    5  3
  OR2AK2 WILD-TYPE 92 67
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               8              159 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
               3               67 
$`OR2AK2 MUTATED`
TCGA-18-5595 TCGA-21-5786 TCGA-33-4566 TCGA-37-4141 TCGA-56-6545 TCGA-60-2723 
       27.16        21.57       173.79         0.39         2.04        22.78 
TCGA-66-2789 TCGA-85-6560 
        4.04         0.36 

$`OR2AK2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 
       43.76         6.15         2.79        90.51         3.02       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        3.95         0.43         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 
        0.39         0.39         2.07        28.93         0.10         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       24.10         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
            0.36             0.10 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
          173.79           141.34 
  OR2AK2 MUTATED OR2AK2 WILD-TYPE 
          12.805           17.880 
[1] "0.4 - 173.8 (12.8)" "0.1 - 141.3 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" "OR2AK2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2AK2 WILD-TYPE"   "OR2AK2 MUTATED" "OR2AK2 WILD-TYPE" 
[1] "hr=" "1.5"
D72V2, continuous
D72V3, binary
                  cls
clus                 0   1
  OR2AK2 MUTATED     3   5
  OR2AK2 WILD-TYPE  44 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2AK2 MUTATED      3    5
  OR2AK2 WILD-TYPE   44  126
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  FEMALE              3               44
  MALE                5              126
D72V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2AK2 MUTATED                                       0
  OR2AK2 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2AK2 MUTATED                                        0
  OR2AK2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2AK2 MUTATED                                                             8
  OR2AK2 WILD-TYPE                                                         164
D72V5, multiclass
                                                             clus
vv                                                            OR2AK2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            OR2AK2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
                  vv
clus                T1  T2  T3  T4
  OR2AK2 MUTATED     2   6   0   0
  OR2AK2 WILD-TYPE  34 110  14  12
D72V6, multiclass
    clus
vv   OR2AK2 MUTATED OR2AK2 WILD-TYPE
  T1              2               34
  T2              6              110
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR2AK2 MUTATED     6   1   0   1
  OR2AK2 WILD-TYPE 111  38  17   4
D72V7, multiclass
    clus
vv   OR2AK2 MUTATED OR2AK2 WILD-TYPE
  N0              6              111
  N1              1               38
  N2              0               17
  N3              1                4
                  vv
clus                M0  M1  MX
  OR2AK2 MUTATED     8   0   0
  OR2AK2 WILD-TYPE 157   3   6
D72V8, multiclass
    clus
vv   OR2AK2 MUTATED OR2AK2 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR2AK2 MUTATED    6  0      2
  OR2AK2 WILD-TYPE 91 38     39
D72V9, multiclass
        clus
vv       OR2AK2 MUTATED OR2AK2 WILD-TYPE
  I                   6               91
  II                  0               38
  III+IV              2               39
D72V10, binary
                  cls
clus                 0   1
  OR2AK2 MUTATED     0   8
  OR2AK2 WILD-TYPE   4 166
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2AK2 MUTATED      0    8
  OR2AK2 WILD-TYPE    4  166
     clus
vv    OR2AK2 MUTATED OR2AK2 WILD-TYPE
  NO               0                4
  YES              8              166
D72V11, continuous
D72V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2AK2 MUTATED                                             4
  OR2AK2 WILD-TYPE                                          90
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2AK2 MUTATED                                        0              2
  OR2AK2 WILD-TYPE                                     43             26
                  vv
clus               LIFELONG NON-SMOKER
  OR2AK2 MUTATED                     2
  OR2AK2 WILD-TYPE                   6
D72V13, multiclass
                                             clus
vv                                            OR2AK2 MUTATED OR2AK2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      2                6
D72V14, continuous

Clustering(73) Variable = FAM5B MUTATION ANALYSIS
D73V1, survival
                 sevent
clus2              0  1
  FAM5B MUTATED   11  3
  FAM5B WILD-TYPE 86 67
  FAM5B MUTATED FAM5B WILD-TYPE 
             14             153 
  FAM5B MUTATED FAM5B WILD-TYPE 
              3              67 
$`FAM5B MUTATED`
TCGA-18-3421 TCGA-21-5784 TCGA-33-4586 TCGA-39-5016 TCGA-39-5022 TCGA-39-5035 
       43.76        29.85        14.07        74.07        55.17        15.58 
TCGA-43-5668 TCGA-56-6545 TCGA-60-2720 TCGA-66-2744 TCGA-66-2768 TCGA-66-2787 
        8.48         2.04         3.16         0.99         2.01        40.01 
TCGA-66-2791 TCGA-85-6560 
        5.03         0.36 

$`FAM5B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53       141.34        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57        18.84         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 
       11.77        16.96        43.10        21.07         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       25.97        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  FAM5B MUTATED FAM5B WILD-TYPE 
           0.36            0.10 
  FAM5B MUTATED FAM5B WILD-TYPE 
          74.07          173.79 
  FAM5B MUTATED FAM5B WILD-TYPE 
         11.275          18.840 
[1] "0.4 - 74.1 (11.3)"  "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "FAM5B MUTATED" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE"   "FAM5B MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" "FAM5B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FAM5B WILD-TYPE"   "FAM5B MUTATED" "FAM5B WILD-TYPE" 
[1] "hr=" "1.7"
D73V2, continuous
D73V3, binary
                 cls
clus                0   1
  FAM5B MUTATED     4  10
  FAM5B WILD-TYPE  43 121
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5B MUTATED      4   10
  FAM5B WILD-TYPE   43  121
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  FEMALE             4              43
  MALE              10             121
D73V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  FAM5B MUTATED                                       1
  FAM5B WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  FAM5B MUTATED                                        0
  FAM5B WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FAM5B MUTATED                                                            13
  FAM5B WILD-TYPE                                                         159
D73V5, multiclass
                                                             clus
vv                                                            FAM5B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            13
                                                             clus
vv                                                            FAM5B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             159
                 vv
clus               T1  T2  T3  T4
  FAM5B MUTATED     3  11   0   0
  FAM5B WILD-TYPE  33 105  14  12
D73V6, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  T1             3              33
  T2            11             105
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  FAM5B MUTATED     7   5   1   1
  FAM5B WILD-TYPE 110  34  16   4
D73V7, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  N0             7             110
  N1             5              34
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  FAM5B MUTATED    14   0   0
  FAM5B WILD-TYPE 151   3   6
D73V8, multiclass
    clus
vv   FAM5B MUTATED FAM5B WILD-TYPE
  M0            14             151
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  FAM5B MUTATED    7  4      3
  FAM5B WILD-TYPE 90 34     38
D73V9, multiclass
        clus
vv       FAM5B MUTATED FAM5B WILD-TYPE
  I                  7              90
  II                 4              34
  III+IV             3              38
D73V10, binary
                 cls
clus                0   1
  FAM5B MUTATED     0  14
  FAM5B WILD-TYPE   4 160
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FAM5B MUTATED      0   14
  FAM5B WILD-TYPE    4  160
     clus
vv    FAM5B MUTATED FAM5B WILD-TYPE
  NO              0               4
  YES            14             160
D73V11, continuous
D73V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FAM5B MUTATED                                            11
  FAM5B WILD-TYPE                                          83
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FAM5B MUTATED                                        1              1
  FAM5B WILD-TYPE                                     42             27
                 vv
clus              LIFELONG NON-SMOKER
  FAM5B MUTATED                     1
  FAM5B WILD-TYPE                   7
D73V13, multiclass
                                             clus
vv                                            FAM5B MUTATED FAM5B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            11              83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D73V14, continuous

Clustering(74) Variable = OR10A4 MUTATION ANALYSIS
D74V1, survival
                  sevent
clus2               0  1
  OR10A4 MUTATED    4  4
  OR10A4 WILD-TYPE 93 66
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               8              159 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               4               66 
$`OR10A4 MUTATED`
TCGA-18-3411 TCGA-18-3419 TCGA-21-5787 TCGA-33-4566 TCGA-33-4586 TCGA-39-5036 
       46.52         1.61        10.82       173.79        14.07        35.64 
TCGA-60-2719 TCGA-66-2793 
       30.61        10.06 

$`OR10A4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        15.58         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
       22.98         4.04         5.03        30.02        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR10A4 MUTATED OR10A4 WILD-TYPE 
            1.61             0.10 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
          173.79           141.34 
  OR10A4 MUTATED OR10A4 WILD-TYPE 
           22.34            17.88 
[1] "1.6 - 173.8 (22.3)" "0.1 - 141.3 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR10A4 WILD-TYPE"   "OR10A4 MUTATED" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
[1] "hr=" "1.4"
D74V2, continuous
D74V3, binary
                  cls
clus                 0   1
  OR10A4 MUTATED     2   6
  OR10A4 WILD-TYPE  45 125
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A4 MUTATED      2    6
  OR10A4 WILD-TYPE   45  125
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  FEMALE              2               45
  MALE                6              125
D74V4, continuous
[1] "Remove cluster labels:" "OR10A4 MUTATED"        
clus
  OR10A4 MUTATED OR10A4 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-21-5782       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4613 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5472       TCGA-22-5473       TCGA-22-5474       TCGA-22-5477 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR10A4 WILD-TYPE" "OR10A4 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR10A4 MUTATED                                       0
  OR10A4 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR10A4 MUTATED                                        0
  OR10A4 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR10A4 MUTATED                                                             8
  OR10A4 WILD-TYPE                                                         164
D74V5, multiclass
                                                             clus
vv                                                            OR10A4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              8
                                                             clus
vv                                                            OR10A4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              164
                  vv
clus                T1  T2  T3  T4
  OR10A4 MUTATED     1   6   0   1
  OR10A4 WILD-TYPE  35 110  14  11
D74V6, multiclass
    clus
vv   OR10A4 MUTATED OR10A4 WILD-TYPE
  T1              1               35
  T2              6              110
  T3              0               14
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  OR10A4 MUTATED     3   2   3   0
  OR10A4 WILD-TYPE 114  37  14   5
D74V7, multiclass
    clus
vv   OR10A4 MUTATED OR10A4 WILD-TYPE
  N0              3              114
  N1              2               37
  N2              3               14
  N3              0                5
                  vv
clus                M0  M1  MX
  OR10A4 MUTATED     8   0   0
  OR10A4 WILD-TYPE 157   3   6
D74V8, multiclass
    clus
vv   OR10A4 MUTATED OR10A4 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR10A4 MUTATED    3  1      4
  OR10A4 WILD-TYPE 94 37     37
D74V9, multiclass
        clus
vv       OR10A4 MUTATED OR10A4 WILD-TYPE
  I                   3               94
  II                  1               37
  III+IV              4               37
D74V10, binary
                  cls
clus                 0   1
  OR10A4 MUTATED     1   7
  OR10A4 WILD-TYPE   3 167
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR10A4 MUTATED      1    7
  OR10A4 WILD-TYPE    3  167
     clus
vv    OR10A4 MUTATED OR10A4 WILD-TYPE
  NO               1                3
  YES              7              167
D74V11, continuous
D74V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR10A4 MUTATED                                             5
  OR10A4 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR10A4 MUTATED                                        1              2
  OR10A4 WILD-TYPE                                     42             26
                  vv
clus               LIFELONG NON-SMOKER
  OR10A4 MUTATED                     0
  OR10A4 WILD-TYPE                   8
D74V13, multiclass
                                             clus
vv                                            OR10A4 MUTATED OR10A4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D74V14, continuous

Clustering(75) Variable = OR8H1 MUTATION ANALYSIS
D75V1, survival
                 sevent
clus2              0  1
  OR8H1 MUTATED    5  3
  OR8H1 WILD-TYPE 92 67
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              8             159 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
              3              67 
$`OR8H1 MUTATED`
TCGA-21-1071 TCGA-22-5471 TCGA-33-4566 TCGA-33-4586 TCGA-60-2708 TCGA-60-2719 
       46.88        31.69       173.79        14.07        68.45        30.61 
TCGA-66-2756 TCGA-66-2785 
        0.99         1.94 

$`OR8H1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
      115.59        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
       43.10       103.53       141.34        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        10.22        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        9.01        47.87        35.34         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
       21.07         0.99         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR8H1 MUTATED OR8H1 WILD-TYPE 
           0.99            0.10 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
         173.79          141.34 
  OR8H1 MUTATED OR8H1 WILD-TYPE 
          31.15           16.96 
[1] "1.0 - 173.8 (31.1)" "0.1 - 141.3 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
  "OR8H1 MUTATED" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE"   "OR8H1 MUTATED" "OR8H1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" "OR8H1 WILD-TYPE" 
[1] "hr=" "2.5"
D75V2, continuous
D75V3, binary
                 cls
clus                0   1
  OR8H1 MUTATED     2   6
  OR8H1 WILD-TYPE  45 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H1 MUTATED      2    6
  OR8H1 WILD-TYPE   45  125
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  FEMALE             2              45
  MALE               6             125
D75V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR8H1 MUTATED                                       0
  OR8H1 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR8H1 MUTATED                                        0
  OR8H1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR8H1 MUTATED                                                             8
  OR8H1 WILD-TYPE                                                         164
D75V5, multiclass
                                                             clus
vv                                                            OR8H1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            OR8H1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  OR8H1 MUTATED     1   6   0   1
  OR8H1 WILD-TYPE  35 110  14  11
D75V6, multiclass
    clus
vv   OR8H1 MUTATED OR8H1 WILD-TYPE
  T1             1              35
  T2             6             110
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR8H1 MUTATED     6   1   1   0
  OR8H1 WILD-TYPE 111  38  16   5
D75V7, multiclass
    clus
vv   OR8H1 MUTATED OR8H1 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR8H1 MUTATED     8   0   0
  OR8H1 WILD-TYPE 157   3   6
D75V8, multiclass
    clus
vv   OR8H1 MUTATED OR8H1 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR8H1 MUTATED    5  1      2
  OR8H1 WILD-TYPE 92 37     39
D75V9, multiclass
        clus
vv       OR8H1 MUTATED OR8H1 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             2              39
D75V10, binary
                 cls
clus                0   1
  OR8H1 MUTATED     1   7
  OR8H1 WILD-TYPE   3 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8H1 MUTATED      1    7
  OR8H1 WILD-TYPE    3  167
     clus
vv    OR8H1 MUTATED OR8H1 WILD-TYPE
  NO              1               3
  YES             7             167
D75V11, continuous
D75V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR8H1 MUTATED                                             5
  OR8H1 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR8H1 MUTATED                                        1              2
  OR8H1 WILD-TYPE                                     42             26
                 vv
clus              LIFELONG NON-SMOKER
  OR8H1 MUTATED                     0
  OR8H1 WILD-TYPE                   8
D75V13, multiclass
                                             clus
vv                                            OR8H1 MUTATED OR8H1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D75V14, continuous

Clustering(76) Variable = PYHIN1 MUTATION ANALYSIS
D76V1, survival
                  sevent
clus2               0  1
  PYHIN1 MUTATED    8  3
  PYHIN1 WILD-TYPE 89 67
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              156 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               3               67 
$`PYHIN1 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-21-5784 TCGA-22-4599 TCGA-37-3789 TCGA-37-4133 
       79.46       115.59        29.85        38.17         0.43         7.82 
TCGA-39-5030 TCGA-43-6770 TCGA-56-6545 TCGA-66-2773 TCGA-66-2792 
        1.94         2.79         2.04         3.02        30.02 

$`PYHIN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5786 
       60.89        34.78        15.55         9.30        31.63        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        24.13        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 
       55.17        70.03        60.76         1.71        24.33        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         7.00         6.02         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
            0.43             0.10 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
          115.59           173.79 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
            7.82            17.98 
[1] "0.4 - 115.6 (7.8)"  "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "PYHIN1 MUTATED"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "PYHIN1 MUTATED"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
  "PYHIN1 MUTATED"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE"   "PYHIN1 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "PYHIN1 MUTATED" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
[1] "hr=" "1.6"
D76V2, continuous
D76V3, binary
                  cls
clus                 0   1
  PYHIN1 MUTATED     6   5
  PYHIN1 WILD-TYPE  41 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      6    5
  PYHIN1 WILD-TYPE   41  126
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  FEMALE              6               41
  MALE                5              126
D76V4, continuous
[1] "Remove cluster labels:" "PYHIN1 MUTATED"        
clus
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"PYHIN1 WILD-TYPE" "PYHIN1 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PYHIN1 MUTATED                                       1
  PYHIN1 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PYHIN1 MUTATED                                        0
  PYHIN1 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PYHIN1 MUTATED                                                            10
  PYHIN1 WILD-TYPE                                                         162
D76V5, multiclass
                                                             clus
vv                                                            PYHIN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             10
                                                             clus
vv                                                            PYHIN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              162
                  vv
clus                T1  T2  T3  T4
  PYHIN1 MUTATED     1   8   1   1
  PYHIN1 WILD-TYPE  35 108  13  11
D76V6, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  T1              1               35
  T2              8              108
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  PYHIN1 MUTATED     9   1   1   0
  PYHIN1 WILD-TYPE 108  38  16   5
D76V7, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  N0              9              108
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  PYHIN1 MUTATED     9   0   1
  PYHIN1 WILD-TYPE 156   3   5
D76V8, multiclass
    clus
vv   PYHIN1 MUTATED PYHIN1 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  PYHIN1 MUTATED    6  1      3
  PYHIN1 WILD-TYPE 91 37     38
D76V9, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  I                   6               91
  II                  1               37
  III+IV              3               38
D76V10, binary
                  cls
clus                 0   1
  PYHIN1 MUTATED     0  11
  PYHIN1 WILD-TYPE   4 163
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PYHIN1 MUTATED      0   11
  PYHIN1 WILD-TYPE    4  163
     clus
vv    PYHIN1 MUTATED PYHIN1 WILD-TYPE
  NO               0                4
  YES             11              163
D76V11, continuous
D76V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PYHIN1 MUTATED                                             3
  PYHIN1 WILD-TYPE                                          91
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PYHIN1 MUTATED                                        4              3
  PYHIN1 WILD-TYPE                                     39             25
                  vv
clus               LIFELONG NON-SMOKER
  PYHIN1 MUTATED                     1
  PYHIN1 WILD-TYPE                   7
D76V13, multiclass
                                             clus
vv                                            PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      1                7
D76V14, continuous

Clustering(77) Variable = CNTNAP4 MUTATION ANALYSIS
D77V1, survival
                   sevent
clus2                0  1
  CNTNAP4 MUTATED    9  6
  CNTNAP4 WILD-TYPE 88 64
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
               15               152 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
                6                64 
$`CNTNAP4 MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-22-0944 TCGA-22-4604 TCGA-22-4613 TCGA-22-5492 
       12.16        79.46         7.33        13.12        11.77        16.60 
TCGA-33-4532 TCGA-34-5231 TCGA-34-5928 TCGA-39-5027 TCGA-46-6025 TCGA-56-6545 
       82.98        50.24         5.52        60.76         0.95         2.04 
TCGA-60-2698 TCGA-60-2723 TCGA-66-2759 
       10.22        22.78        25.02 

$`CNTNAP4 WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57        10.82         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 
       20.45        35.08        24.13        38.17        34.75        19.30 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.69        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4533 
       71.34        11.74        30.08        62.86        56.32       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       19.76         2.63        61.61        32.84        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
        9.04        10.82         7.73        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
       74.07        44.71        68.58        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
        6.02         2.79         5.42         9.96         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-60-2707 
        0.39         2.07        28.93         0.10         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       35.34        30.61         3.16        26.07        24.10         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
        2.01         0.92         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
             0.95              0.10 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            82.98            173.79 
  CNTNAP4 MUTATED CNTNAP4 WILD-TYPE 
            13.12             18.46 
[1] "0.9 - 83.0 (13.1)"  "0.1 - 173.8 (18.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
  "CNTNAP4 MUTATED"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
  "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" "CNTNAP4 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE"   "CNTNAP4 MUTATED" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" "CNTNAP4 WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
D77V3, binary
                   cls
clus                  0   1
  CNTNAP4 MUTATED     5  11
  CNTNAP4 WILD-TYPE  42 120
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      5   11
  CNTNAP4 WILD-TYPE   42  120
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  FEMALE               5                42
  MALE                11               120
D77V4, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CNTNAP4 MUTATED                                       1
  CNTNAP4 WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CNTNAP4 MUTATED                                        0
  CNTNAP4 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CNTNAP4 MUTATED                                                            15
  CNTNAP4 WILD-TYPE                                                         157
D77V5, multiclass
                                                             clus
vv                                                            CNTNAP4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              15
                                                             clus
vv                                                            CNTNAP4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               157
                   vv
clus                 T1  T2  T3  T4
  CNTNAP4 MUTATED     4  11   1   0
  CNTNAP4 WILD-TYPE  32 105  13  12
D77V6, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  T1               4                32
  T2              11               105
  T3               1                13
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  CNTNAP4 MUTATED     9   5   2   0
  CNTNAP4 WILD-TYPE 108  34  15   5
D77V7, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  N0               9               108
  N1               5                34
  N2               2                15
  N3               0                 5
                   vv
clus                 M0  M1  MX
  CNTNAP4 MUTATED    16   0   0
  CNTNAP4 WILD-TYPE 149   3   6
D77V8, multiclass
    clus
vv   CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  M0              16               149
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  CNTNAP4 MUTATED    8  4      3
  CNTNAP4 WILD-TYPE 89 34     38
D77V9, multiclass
        clus
vv       CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  I                    8                89
  II                   4                34
  III+IV               3                38
D77V10, binary
                   cls
clus                  0   1
  CNTNAP4 MUTATED     0  16
  CNTNAP4 WILD-TYPE   4 158
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CNTNAP4 MUTATED      0   16
  CNTNAP4 WILD-TYPE    4  158
     clus
vv    CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  NO                0                 4
  YES              16               158
D77V11, continuous
D77V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CNTNAP4 MUTATED                                             7
  CNTNAP4 WILD-TYPE                                          87
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CNTNAP4 MUTATED                                        4              3
  CNTNAP4 WILD-TYPE                                     39             25
                   vv
clus                LIFELONG NON-SMOKER
  CNTNAP4 MUTATED                     2
  CNTNAP4 WILD-TYPE                   6
D77V13, multiclass
                                             clus
vv                                            CNTNAP4 MUTATED CNTNAP4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               7                87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    4                39
  CURRENT SMOKER                                            3                25
  LIFELONG NON-SMOKER                                       2                 6
D77V14, continuous

Clustering(78) Variable = HRAS MUTATION ANALYSIS
D78V1, survival
                sevent
clus2             0  1
  HRAS MUTATED    3  2
  HRAS WILD-TYPE 94 68
  HRAS MUTATED HRAS WILD-TYPE 
             5            162 
  HRAS MUTATED HRAS WILD-TYPE 
             2             68 
$`HRAS MUTATED`
TCGA-18-3414 TCGA-21-5786 TCGA-34-2600 TCGA-34-5240 TCGA-66-2758 
       13.02        21.57        61.61         7.73        20.98 

$`HRAS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
       10.82        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  HRAS MUTATED HRAS WILD-TYPE 
          7.73           0.10 
  HRAS MUTATED HRAS WILD-TYPE 
         61.61         173.79 
  HRAS MUTATED HRAS WILD-TYPE 
         20.98          17.42 
[1] "7.7 - 61.6 (21.0)"  "0.1 - 173.8 (17.4)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HRAS WILD-TYPE" "HRAS WILD-TYPE"   "HRAS MUTATED" "HRAS WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, binary
                cls
clus               0   1
  HRAS MUTATED     2   3
  HRAS WILD-TYPE  45 128
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRAS MUTATED      2    3
  HRAS WILD-TYPE   45  128
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  FEMALE            2             45
  MALE              3            128
D78V4, continuous
[1] "Remove cluster labels:" "HRAS MUTATED"          
clus
  HRAS MUTATED HRAS WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3419 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5787     TCGA-22-4591     TCGA-22-4593 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4595     TCGA-22-4599     TCGA-22-4601     TCGA-22-4604 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"HRAS WILD-TYPE" "HRAS WILD-TYPE" "HRAS WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HRAS MUTATED                                       1
  HRAS WILD-TYPE                                     4
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HRAS MUTATED                                        0
  HRAS WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HRAS MUTATED                                                             4
  HRAS WILD-TYPE                                                         168
D78V5, multiclass
                                                             clus
vv                                                            HRAS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            4
                                                             clus
vv                                                            HRAS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            168
                vv
clus              T1  T2  T3  T4
  HRAS MUTATED     1   3   0   1
  HRAS WILD-TYPE  35 113  14  11
D78V6, multiclass
    clus
vv   HRAS MUTATED HRAS WILD-TYPE
  T1            1             35
  T2            3            113
  T3            0             14
  T4            1             11
                vv
clus              N0  N1  N2  N3
  HRAS MUTATED     3   2   0   0
  HRAS WILD-TYPE 114  37  17   5
D78V7, multiclass
    clus
vv   HRAS MUTATED HRAS WILD-TYPE
  N0            3            114
  N1            2             37
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  HRAS MUTATED     4   1   0
  HRAS WILD-TYPE 161   2   6
D78V8, multiclass
    clus
vv   HRAS MUTATED HRAS WILD-TYPE
  M0            4            161
  M1            1              2
  MX            0              6
                vv
clus              I II III+IV
  HRAS MUTATED    3  1      1
  HRAS WILD-TYPE 94 37     40
D78V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  I                 3             94
  II                1             37
  III+IV            1             40
D78V10, binary
                cls
clus               0   1
  HRAS MUTATED     0   5
  HRAS WILD-TYPE   4 169
[1] "tbl2"
                cls
clus             [,1] [,2]
  HRAS MUTATED      0    5
  HRAS WILD-TYPE    4  169
     clus
vv    HRAS MUTATED HRAS WILD-TYPE
  NO             0              4
  YES            5            169
D78V11, continuous
D78V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HRAS MUTATED                                             3
  HRAS WILD-TYPE                                          91
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HRAS MUTATED                                        0              2
  HRAS WILD-TYPE                                     43             26
                vv
clus             LIFELONG NON-SMOKER
  HRAS MUTATED                     0
  HRAS WILD-TYPE                   8
D78V13, multiclass
                                             clus
vv                                            HRAS MUTATED HRAS WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 0             43
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D78V14, continuous

Clustering(79) Variable = PRIM2 MUTATION ANALYSIS
D79V1, survival
                 sevent
clus2              0  1
  PRIM2 MUTATED    9  3
  PRIM2 WILD-TYPE 88 67
  PRIM2 MUTATED PRIM2 WILD-TYPE 
             12             155 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              3              67 
$`PRIM2 MUTATED`
TCGA-18-3409 TCGA-22-1002 TCGA-22-5480 TCGA-34-5239 TCGA-37-4133 TCGA-56-6546 
       79.46         4.31        71.34        10.82         7.82         1.02 
TCGA-60-2709 TCGA-60-2723 TCGA-66-2727 TCGA-66-2763 TCGA-66-2795 TCGA-85-6560 
       49.48        22.78        16.96         0.99         4.01         0.36 

$`PRIM2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57        10.82         7.33         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22         0.79        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        0.43         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2698 
        0.39         2.07        28.93         0.10         2.04        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.70        68.45        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 
       35.34        30.61         3.16        26.07        24.10         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       23.64        11.77        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 
        0.92         0.99         0.99        20.98        25.02         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-85-6561 
       30.02        10.06        54.08        49.05         0.79 

  PRIM2 MUTATED PRIM2 WILD-TYPE 
           0.36            0.10 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
          79.46          173.79 
  PRIM2 MUTATED PRIM2 WILD-TYPE 
           9.32           18.84 
[1] "0.4 - 79.5 (9.3)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "PRIM2 MUTATED" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE"   "PRIM2 MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"PRIM2 WILD-TYPE"   "PRIM2 MUTATED" "PRIM2 WILD-TYPE" 
[1] "hr=" "1.5"
D79V2, continuous
D79V3, binary
                 cls
clus                0   1
  PRIM2 MUTATED     4   9
  PRIM2 WILD-TYPE  43 122
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      4    9
  PRIM2 WILD-TYPE   43  122
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  FEMALE             4              43
  MALE               9             122
D79V4, continuous
[1] "Remove cluster labels:" "PRIM2 MUTATED"         
clus
  PRIM2 MUTATED PRIM2 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5482 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"PRIM2 WILD-TYPE" "PRIM2 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PRIM2 MUTATED                                       1
  PRIM2 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PRIM2 MUTATED                                        0
  PRIM2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PRIM2 MUTATED                                                            12
  PRIM2 WILD-TYPE                                                         160
D79V5, multiclass
                                                             clus
vv                                                            PRIM2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            PRIM2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
                 vv
clus               T1  T2  T3  T4
  PRIM2 MUTATED     4   6   0   3
  PRIM2 WILD-TYPE  32 110  14   9
D79V6, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  T1             4              32
  T2             6             110
  T3             0              14
  T4             3               9
                 vv
clus               N0  N1  N2  N3
  PRIM2 MUTATED    11   2   0   0
  PRIM2 WILD-TYPE 106  37  17   5
D79V7, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  N0            11             106
  N1             2              37
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  PRIM2 MUTATED    11   0   2
  PRIM2 WILD-TYPE 154   3   4
D79V8, multiclass
    clus
vv   PRIM2 MUTATED PRIM2 WILD-TYPE
  M0            11             154
  M1             0               3
  MX             2               4
                 vv
clus               I II III+IV
  PRIM2 MUTATED    7  0      4
  PRIM2 WILD-TYPE 90 38     37
D79V9, multiclass
        clus
vv       PRIM2 MUTATED PRIM2 WILD-TYPE
  I                  7              90
  II                 0              38
  III+IV             4              37
D79V10, binary
                 cls
clus                0   1
  PRIM2 MUTATED     0  13
  PRIM2 WILD-TYPE   4 161
[1] "tbl2"
                 cls
clus              [,1] [,2]
  PRIM2 MUTATED      0   13
  PRIM2 WILD-TYPE    4  161
     clus
vv    PRIM2 MUTATED PRIM2 WILD-TYPE
  NO              0               4
  YES            13             161
D79V11, continuous
D79V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PRIM2 MUTATED                                             8
  PRIM2 WILD-TYPE                                          86
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PRIM2 MUTATED                                        2              2
  PRIM2 WILD-TYPE                                     41             26
                 vv
clus              LIFELONG NON-SMOKER
  PRIM2 MUTATED                     0
  PRIM2 WILD-TYPE                   8
D79V13, multiclass
                                             clus
vv                                            PRIM2 MUTATED PRIM2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             8              86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          2              26
  LIFELONG NON-SMOKER                                     0               8
D79V14, continuous

Clustering(80) Variable = SPOPL MUTATION ANALYSIS
D80V1, survival
                 sevent
clus2              0  1
  SPOPL MUTATED    4  2
  SPOPL WILD-TYPE 93 68
  SPOPL MUTATED SPOPL WILD-TYPE 
              6             161 
  SPOPL MUTATED SPOPL WILD-TYPE 
              2              68 
$`SPOPL MUTATED`
TCGA-33-4532 TCGA-37-5819 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2793 
       82.98         3.39        12.03         3.98         1.94        10.06 

$`SPOPL WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 
       11.74        30.08        62.86        56.32        16.60       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        0.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2782 TCGA-66-2783 
       19.00         3.02         2.01        19.00        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  SPOPL MUTATED SPOPL WILD-TYPE 
           1.94            0.10 
  SPOPL MUTATED SPOPL WILD-TYPE 
          82.98          173.79 
  SPOPL MUTATED SPOPL WILD-TYPE 
           7.02           18.84 
[1] "1.9 - 83.0 (7.0)"   "0.1 - 173.8 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED"   "SPOPL MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED"   "SPOPL MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED"   "SPOPL MUTATED" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SPOPL WILD-TYPE"   "SPOPL MUTATED" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
[1] "hr=" "1.1"
D80V2, continuous
D80V3, binary
                 cls
clus                0   1
  SPOPL MUTATED     0   6
  SPOPL WILD-TYPE  47 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPOPL MUTATED      0    6
  SPOPL WILD-TYPE   47  125
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  FEMALE             0              47
  MALE               6             125
D80V4, continuous
[1] "Remove cluster labels:" "SPOPL MUTATED"         
clus
  SPOPL MUTATED SPOPL WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-22-5492      TCGA-34-5234      TCGA-37-4133      TCGA-37-4135 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"SPOPL WILD-TYPE" "SPOPL WILD-TYPE" "SPOPL WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SPOPL MUTATED                                       0
  SPOPL WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SPOPL MUTATED                                        0
  SPOPL WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SPOPL MUTATED                                                             6
  SPOPL WILD-TYPE                                                         166
D80V5, multiclass
                                                             clus
vv                                                            SPOPL MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            SPOPL WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  SPOPL MUTATED     0   5   0   1
  SPOPL WILD-TYPE  36 111  14  11
D80V6, multiclass
    clus
vv   SPOPL MUTATED SPOPL WILD-TYPE
  T1             0              36
  T2             5             111
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  SPOPL MUTATED     4   1   1   0
  SPOPL WILD-TYPE 113  38  16   5
D80V7, multiclass
    clus
vv   SPOPL MUTATED SPOPL WILD-TYPE
  N0             4             113
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  SPOPL MUTATED     6   0   0
  SPOPL WILD-TYPE 159   3   6
D80V8, multiclass
    clus
vv   SPOPL MUTATED SPOPL WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  SPOPL MUTATED    4  0      2
  SPOPL WILD-TYPE 93 38     39
D80V9, multiclass
        clus
vv       SPOPL MUTATED SPOPL WILD-TYPE
  I                  4              93
  II                 0              38
  III+IV             2              39
D80V10, binary
                 cls
clus                0   1
  SPOPL MUTATED     0   6
  SPOPL WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SPOPL MUTATED      0    6
  SPOPL WILD-TYPE    4  168
     clus
vv    SPOPL MUTATED SPOPL WILD-TYPE
  NO              0               4
  YES             6             168
D80V11, continuous
D80V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SPOPL MUTATED                                             3
  SPOPL WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SPOPL MUTATED                                        2              1
  SPOPL WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  SPOPL MUTATED                     0
  SPOPL WILD-TYPE                   8
D80V13, multiclass
                                             clus
vv                                            SPOPL MUTATED SPOPL WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D80V14, continuous

Clustering(81) Variable = GPC5 MUTATION ANALYSIS
D81V1, survival
                sevent
clus2             0  1
  GPC5 MUTATED    9  2
  GPC5 WILD-TYPE 88 68
  GPC5 MUTATED GPC5 WILD-TYPE 
            11            156 
  GPC5 MUTATED GPC5 WILD-TYPE 
             2             68 
$`GPC5 MUTATED`
TCGA-18-3409 TCGA-22-1016 TCGA-33-4532 TCGA-33-4583 TCGA-37-4133 TCGA-39-5016 
       79.46        27.02        82.98       141.34         7.82        74.07 
TCGA-43-3920 TCGA-60-2698 TCGA-66-2734 TCGA-66-2742 TCGA-66-2770 
       18.84        10.22        43.10        21.07        23.01 

$`GPC5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 
        0.43         6.81         0.39         3.39        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.57         8.48         7.00         6.02         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       23.64        11.77        16.96         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01         2.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  GPC5 MUTATED GPC5 WILD-TYPE 
          7.82           0.10 
  GPC5 MUTATED GPC5 WILD-TYPE 
        141.34         173.79 
  GPC5 MUTATED GPC5 WILD-TYPE 
        27.020         15.565 
[1] "7.8 - 141.3 (27.0)" "0.1 - 173.8 (15.6)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE"   "GPC5 MUTATED" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GPC5 WILD-TYPE"   "GPC5 MUTATED" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
[1] "hr=" "4.4"
D81V2, continuous
D81V3, binary
                cls
clus               0   1
  GPC5 MUTATED     1  10
  GPC5 WILD-TYPE  46 121
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC5 MUTATED      1   10
  GPC5 WILD-TYPE   46  121
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  FEMALE            1             46
  MALE             10            121
D81V4, continuous
[1] "Remove cluster labels:" "GPC5 MUTATED"          
clus
  GPC5 MUTATED GPC5 WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-22-5492     TCGA-34-5234     TCGA-37-4135     TCGA-37-5819 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"GPC5 WILD-TYPE" "GPC5 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  GPC5 MUTATED                                       2
  GPC5 WILD-TYPE                                     3
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  GPC5 MUTATED                                        0
  GPC5 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GPC5 MUTATED                                                             9
  GPC5 WILD-TYPE                                                         163
D81V5, multiclass
                                                             clus
vv                                                            GPC5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            9
                                                             clus
vv                                                            GPC5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            163
                vv
clus              T1  T2  T3  T4
  GPC5 MUTATED     2   8   0   1
  GPC5 WILD-TYPE  34 108  14  11
D81V6, multiclass
    clus
vv   GPC5 MUTATED GPC5 WILD-TYPE
  T1            2             34
  T2            8            108
  T3            0             14
  T4            1             11
                vv
clus              N0  N1  N2  N3
  GPC5 MUTATED     8   3   0   0
  GPC5 WILD-TYPE 109  36  17   5
D81V7, multiclass
    clus
vv   GPC5 MUTATED GPC5 WILD-TYPE
  N0            8            109
  N1            3             36
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  GPC5 MUTATED    10   1   0
  GPC5 WILD-TYPE 155   2   6
D81V8, multiclass
    clus
vv   GPC5 MUTATED GPC5 WILD-TYPE
  M0           10            155
  M1            1              2
  MX            0              6
                vv
clus              I II III+IV
  GPC5 MUTATED    6  2      2
  GPC5 WILD-TYPE 91 36     39
D81V9, multiclass
        clus
vv       GPC5 MUTATED GPC5 WILD-TYPE
  I                 6             91
  II                2             36
  III+IV            2             39
D81V10, binary
                cls
clus               0   1
  GPC5 MUTATED     0  11
  GPC5 WILD-TYPE   4 163
[1] "tbl2"
                cls
clus             [,1] [,2]
  GPC5 MUTATED      0   11
  GPC5 WILD-TYPE    4  163
     clus
vv    GPC5 MUTATED GPC5 WILD-TYPE
  NO             0              4
  YES           11            163
D81V11, continuous
D81V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GPC5 MUTATED                                             5
  GPC5 WILD-TYPE                                          89
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GPC5 MUTATED                                        5              1
  GPC5 WILD-TYPE                                     38             27
                vv
clus             LIFELONG NON-SMOKER
  GPC5 MUTATED                     0
  GPC5 WILD-TYPE                   8
D81V13, multiclass
                                             clus
vv                                            GPC5 MUTATED GPC5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 5             38
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D81V14, continuous

Clustering(82) Variable = HLA-A MUTATION ANALYSIS
D82V1, survival
                 sevent
clus2              0  1
  HLA-A MUTATED    4  2
  HLA-A WILD-TYPE 93 68
  HLA-A MUTATED HLA-A WILD-TYPE 
              6             161 
  HLA-A MUTATED HLA-A WILD-TYPE 
              2              68 
$`HLA-A MUTATED`
TCGA-18-3419 TCGA-21-5782 TCGA-37-5819 TCGA-39-5024 TCGA-60-2698 TCGA-66-2786 
        1.61        31.63         3.39        70.03        10.22        25.97 

$`HLA-A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        55.17        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  HLA-A MUTATED HLA-A WILD-TYPE 
           1.61            0.10 
  HLA-A MUTATED HLA-A WILD-TYPE 
          70.03          173.79 
  HLA-A MUTATED HLA-A WILD-TYPE 
         18.095          17.880 
[1] "1.6 - 70.0 (18.1)"  "0.1 - 173.8 (17.9)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HLA-A WILD-TYPE"   "HLA-A MUTATED" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE"   "HLA-A MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HLA-A WILD-TYPE" "HLA-A WILD-TYPE" "HLA-A WILD-TYPE" 
[1] "hr=" "1.2"
D82V2, continuous
D82V3, binary
                 cls
clus                0   1
  HLA-A MUTATED     3   3
  HLA-A WILD-TYPE  44 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-A MUTATED      3    3
  HLA-A WILD-TYPE   44  128
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  FEMALE             3              44
  MALE               3             128
D82V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HLA-A MUTATED                                       0
  HLA-A WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HLA-A MUTATED                                        0
  HLA-A WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HLA-A MUTATED                                                             6
  HLA-A WILD-TYPE                                                         166
D82V5, multiclass
                                                             clus
vv                                                            HLA-A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            HLA-A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  HLA-A MUTATED     1   5   0   0
  HLA-A WILD-TYPE  35 111  14  12
D82V6, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  T1             1              35
  T2             5             111
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  HLA-A MUTATED     2   2   2   0
  HLA-A WILD-TYPE 115  37  15   5
D82V7, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  N0             2             115
  N1             2              37
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  HLA-A MUTATED     6   0   0
  HLA-A WILD-TYPE 159   3   6
D82V8, multiclass
    clus
vv   HLA-A MUTATED HLA-A WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  HLA-A MUTATED    2  2      2
  HLA-A WILD-TYPE 95 36     39
D82V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  I                  2              95
  II                 2              36
  III+IV             2              39
D82V10, binary
                 cls
clus                0   1
  HLA-A MUTATED     0   6
  HLA-A WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HLA-A MUTATED      0    6
  HLA-A WILD-TYPE    4  168
     clus
vv    HLA-A MUTATED HLA-A WILD-TYPE
  NO              0               4
  YES             6             168
D82V11, continuous
D82V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HLA-A MUTATED                                             5
  HLA-A WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HLA-A MUTATED                                        1              0
  HLA-A WILD-TYPE                                     42             28
                 vv
clus              LIFELONG NON-SMOKER
  HLA-A MUTATED                     0
  HLA-A WILD-TYPE                   8
D82V13, multiclass
                                             clus
vv                                            HLA-A MUTATED HLA-A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D82V14, continuous

Clustering(83) Variable = OR5AC2 MUTATION ANALYSIS
D83V1, survival
                  sevent
clus2               0  1
  OR5AC2 MUTATED    3  4
  OR5AC2 WILD-TYPE 94 66
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               7              160 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               4               66 
$`OR5AC2 MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-33-4582 TCGA-34-5236 TCGA-39-5027 TCGA-66-2742 
       79.46         4.80       103.53         9.04        60.76        21.07 
TCGA-66-2773 
        3.02 

$`OR5AC2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
       61.61        32.84        50.24        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
       44.71        68.58        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
            3.02             0.10 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
          103.53           173.79 
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
           21.07            17.42 
[1] "3.0 - 103.5 (21.1)" "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
  "OR5AC2 MUTATED" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE"   "OR5AC2 MUTATED" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
[1] "hr=" "1.1"
D83V2, continuous
D83V3, binary
                  cls
clus                 0   1
  OR5AC2 MUTATED     0   7
  OR5AC2 WILD-TYPE  47 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AC2 MUTATED      0    7
  OR5AC2 WILD-TYPE   47  124
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  FEMALE              0               47
  MALE                7              124
D83V4, continuous
[1] "Remove cluster labels:" "OR5AC2 MUTATED"        
clus
  OR5AC2 MUTATED OR5AC2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3414       TCGA-18-3419 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5787       TCGA-22-4591       TCGA-22-4593 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" "OR5AC2 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR5AC2 MUTATED                                       1
  OR5AC2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR5AC2 MUTATED                                        0
  OR5AC2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5AC2 MUTATED                                                             6
  OR5AC2 WILD-TYPE                                                         166
D83V5, multiclass
                                                             clus
vv                                                            OR5AC2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            OR5AC2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
                  vv
clus                T1  T2  T3  T4
  OR5AC2 MUTATED     2   3   2   0
  OR5AC2 WILD-TYPE  34 113  12  12
D83V6, multiclass
    clus
vv   OR5AC2 MUTATED OR5AC2 WILD-TYPE
  T1              2               34
  T2              3              113
  T3              2               12
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR5AC2 MUTATED     6   1   0   0
  OR5AC2 WILD-TYPE 111  38  17   5
D83V7, multiclass
    clus
vv   OR5AC2 MUTATED OR5AC2 WILD-TYPE
  N0              6              111
  N1              1               38
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  OR5AC2 MUTATED     6   1   0
  OR5AC2 WILD-TYPE 159   2   6
D83V8, multiclass
    clus
vv   OR5AC2 MUTATED OR5AC2 WILD-TYPE
  M0              6              159
  M1              1                2
  MX              0                6
                  vv
clus                I II III+IV
  OR5AC2 MUTATED    3  1      2
  OR5AC2 WILD-TYPE 94 37     39
D83V9, multiclass
        clus
vv       OR5AC2 MUTATED OR5AC2 WILD-TYPE
  I                   3               94
  II                  1               37
  III+IV              2               39
D83V10, binary
                  cls
clus                 0   1
  OR5AC2 MUTATED     0   7
  OR5AC2 WILD-TYPE   4 167
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AC2 MUTATED      0    7
  OR5AC2 WILD-TYPE    4  167
     clus
vv    OR5AC2 MUTATED OR5AC2 WILD-TYPE
  NO               0                4
  YES              7              167
D83V11, continuous
D83V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5AC2 MUTATED                                             1
  OR5AC2 WILD-TYPE                                          93
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5AC2 MUTATED                                        4              1
  OR5AC2 WILD-TYPE                                     39             27
                  vv
clus               LIFELONG NON-SMOKER
  OR5AC2 MUTATED                     0
  OR5AC2 WILD-TYPE                   8
D83V13, multiclass
                                             clus
vv                                            OR5AC2 MUTATED OR5AC2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              1               93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   4               39
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D83V14, continuous

Clustering(84) Variable = GABRA2 MUTATION ANALYSIS
D84V1, survival
                  sevent
clus2               0  1
  GABRA2 MUTATED    9  2
  GABRA2 WILD-TYPE 88 68
  GABRA2 MUTATED GABRA2 WILD-TYPE 
              11              156 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
               2               68 
$`GABRA2 MUTATED`
TCGA-18-3409 TCGA-21-1081 TCGA-21-5786 TCGA-34-5231 TCGA-34-5232 TCGA-60-2698 
       79.46         9.30        21.57        50.24        51.78        10.22 
TCGA-66-2744 TCGA-66-2757 TCGA-66-2777 TCGA-66-2783 TCGA-66-2787 
        0.99         0.99         2.01        24.95        40.01 

$`GABRA2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 
       46.88        60.89        34.78        15.55        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       61.61        32.84        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
       21.07         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  GABRA2 MUTATED GABRA2 WILD-TYPE 
            0.99             0.10 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
           79.46           173.79 
  GABRA2 MUTATED GABRA2 WILD-TYPE 
           21.57            17.42 
[1] "1.0 - 79.5 (21.6)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRA2 WILD-TYPE"   "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
  "GABRA2 MUTATED" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
[1] "hr=" "2.4"
D84V2, continuous
D84V3, binary
                  cls
clus                 0   1
  GABRA2 MUTATED     2  10
  GABRA2 WILD-TYPE  45 121
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA2 MUTATED      2   10
  GABRA2 WILD-TYPE   45  121
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  FEMALE              2               45
  MALE               10              121
D84V4, continuous
[1] "Remove cluster labels:" "GABRA2 MUTATED"        
clus
  GABRA2 MUTATED GABRA2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-22-5492       TCGA-34-5234       TCGA-37-4133       TCGA-37-4135 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-37-5819       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" "GABRA2 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  GABRA2 MUTATED                                       1
  GABRA2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  GABRA2 MUTATED                                        0
  GABRA2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GABRA2 MUTATED                                                            11
  GABRA2 WILD-TYPE                                                         161
D84V5, multiclass
                                                             clus
vv                                                            GABRA2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             11
                                                             clus
vv                                                            GABRA2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              161
                  vv
clus                T1  T2  T3  T4
  GABRA2 MUTATED     5   7   0   0
  GABRA2 WILD-TYPE  31 109  14  12
D84V6, multiclass
    clus
vv   GABRA2 MUTATED GABRA2 WILD-TYPE
  T1              5               31
  T2              7              109
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  GABRA2 MUTATED     7   4   0   1
  GABRA2 WILD-TYPE 110  35  17   4
D84V7, multiclass
    clus
vv   GABRA2 MUTATED GABRA2 WILD-TYPE
  N0              7              110
  N1              4               35
  N2              0               17
  N3              1                4
                  vv
clus                M0  M1  MX
  GABRA2 MUTATED    12   0   0
  GABRA2 WILD-TYPE 153   3   6
D84V8, multiclass
    clus
vv   GABRA2 MUTATED GABRA2 WILD-TYPE
  M0             12              153
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  GABRA2 MUTATED    5  5      1
  GABRA2 WILD-TYPE 92 33     40
D84V9, multiclass
        clus
vv       GABRA2 MUTATED GABRA2 WILD-TYPE
  I                   5               92
  II                  5               33
  III+IV              1               40
D84V10, binary
                  cls
clus                 0   1
  GABRA2 MUTATED     0  12
  GABRA2 WILD-TYPE   4 162
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRA2 MUTATED      0   12
  GABRA2 WILD-TYPE    4  162
     clus
vv    GABRA2 MUTATED GABRA2 WILD-TYPE
  NO               0                4
  YES             12              162
D84V11, continuous
D84V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GABRA2 MUTATED                                             8
  GABRA2 WILD-TYPE                                          86
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GABRA2 MUTATED                                        1              1
  GABRA2 WILD-TYPE                                     42             27
                  vv
clus               LIFELONG NON-SMOKER
  GABRA2 MUTATED                     1
  GABRA2 WILD-TYPE                   7
D84V13, multiclass
                                             clus
vv                                            GABRA2 MUTATED GABRA2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1                7
D84V14, continuous

Clustering(85) Variable = GBA3 MUTATION ANALYSIS
D85V1, survival
                sevent
clus2             0  1
  GBA3 MUTATED    6  2
  GBA3 WILD-TYPE 91 68
  GBA3 MUTATED GBA3 WILD-TYPE 
             8            159 
  GBA3 MUTATED GBA3 WILD-TYPE 
             2             68 
$`GBA3 MUTATED`
TCGA-18-3409 TCGA-18-3416 TCGA-18-4086 TCGA-21-5786 TCGA-39-5037 TCGA-43-5668 
       79.46        28.34         2.79        21.57         0.79         8.48 
TCGA-51-4080 TCGA-66-2757 
        0.39         0.99 

$`GBA3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 
       34.78        15.55         9.30        31.63        29.85        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57        18.84         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        5.42         9.96         0.95         0.59         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 
       28.93         0.10         2.04         1.02        10.22        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
        0.99         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  GBA3 MUTATED GBA3 WILD-TYPE 
          0.39           0.10 
  GBA3 MUTATED GBA3 WILD-TYPE 
         79.46         173.79 
  GBA3 MUTATED GBA3 WILD-TYPE 
         5.635         18.080 
[1] "0.4 - 79.5 (5.6)"   "0.1 - 173.8 (18.1)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE"   "GBA3 MUTATED" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"GBA3 WILD-TYPE"   "GBA3 MUTATED" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"GBA3 WILD-TYPE" "GBA3 WILD-TYPE" "GBA3 WILD-TYPE" 
[1] "hr=" "1.2"
D85V2, continuous
D85V3, binary
                cls
clus               0   1
  GBA3 MUTATED     1   8
  GBA3 WILD-TYPE  46 123
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      1    8
  GBA3 WILD-TYPE   46  123
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  FEMALE            1             46
  MALE              8            123
D85V4, continuous
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  GBA3 MUTATED                                       2
  GBA3 WILD-TYPE                                     3
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  GBA3 MUTATED                                        0
  GBA3 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GBA3 MUTATED                                                             7
  GBA3 WILD-TYPE                                                         165
D85V5, multiclass
                                                             clus
vv                                                            GBA3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            GBA3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
                vv
clus              T1  T2  T3  T4
  GBA3 MUTATED     4   4   0   1
  GBA3 WILD-TYPE  32 112  14  11
D85V6, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  T1            4             32
  T2            4            112
  T3            0             14
  T4            1             11
                vv
clus              N0  N1  N2  N3
  GBA3 MUTATED     5   4   0   0
  GBA3 WILD-TYPE 112  35  17   5
D85V7, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  N0            5            112
  N1            4             35
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  GBA3 MUTATED     8   0   0
  GBA3 WILD-TYPE 157   3   6
D85V8, multiclass
    clus
vv   GBA3 MUTATED GBA3 WILD-TYPE
  M0            8            157
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  GBA3 MUTATED    4  3      1
  GBA3 WILD-TYPE 93 35     40
D85V9, multiclass
        clus
vv       GBA3 MUTATED GBA3 WILD-TYPE
  I                 4             93
  II                3             35
  III+IV            1             40
D85V10, binary
                cls
clus               0   1
  GBA3 MUTATED     0   9
  GBA3 WILD-TYPE   4 165
[1] "tbl2"
                cls
clus             [,1] [,2]
  GBA3 MUTATED      0    9
  GBA3 WILD-TYPE    4  165
     clus
vv    GBA3 MUTATED GBA3 WILD-TYPE
  NO             0              4
  YES            9            165
D85V11, continuous
D85V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GBA3 MUTATED                                             4
  GBA3 WILD-TYPE                                          90
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GBA3 MUTATED                                        3              2
  GBA3 WILD-TYPE                                     40             26
                vv
clus             LIFELONG NON-SMOKER
  GBA3 MUTATED                     0
  GBA3 WILD-TYPE                   8
D85V13, multiclass
                                             clus
vv                                            GBA3 MUTATED GBA3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            4             90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 3             40
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D85V14, continuous

Clustering(86) Variable = KIRREL2 MUTATION ANALYSIS
D86V1, survival
                   sevent
clus2                0  1
  KIRREL2 MUTATED    7  4
  KIRREL2 WILD-TYPE 90 66
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               11               156 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
                4                66 
$`KIRREL2 MUTATED`
TCGA-18-3409 TCGA-18-3421 TCGA-18-5592 TCGA-22-4595 TCGA-33-4566 TCGA-33-4586 
       79.46        43.76         3.02        24.13       173.79        14.07 
TCGA-34-5240 TCGA-43-6647 TCGA-51-4081 TCGA-60-2698 TCGA-60-2723 
        7.73         6.02         2.07        10.22        22.78 

$`KIRREL2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       13.02        59.51        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        2.79        90.51        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       20.45        35.08        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60        82.98       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
      141.34        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 
       51.78        32.68         9.04        10.82        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         7.00         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         0.39        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        2.04         1.02        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        24.10         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
             2.07              0.10 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
           173.79            141.34 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
            14.07             17.98 
[1] "2.1 - 173.8 (14.1)" "0.1 - 141.3 (18.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE"   "KIRREL2 MUTATED" "KIRREL2 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
[1] "hr=" "1.8"
D86V2, continuous
D86V3, binary
                   cls
clus                  0   1
  KIRREL2 MUTATED     3   8
  KIRREL2 WILD-TYPE  44 123
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIRREL2 MUTATED      3    8
  KIRREL2 WILD-TYPE   44  123
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  FEMALE               3                44
  MALE                 8               123
D86V4, continuous
[1] "Remove cluster labels:" "KIRREL2 MUTATED"       
clus
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"KIRREL2 WILD-TYPE" "KIRREL2 WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  KIRREL2 MUTATED                                       2
  KIRREL2 WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  KIRREL2 MUTATED                                        0
  KIRREL2 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KIRREL2 MUTATED                                                             9
  KIRREL2 WILD-TYPE                                                         163
D86V5, multiclass
                                                             clus
vv                                                            KIRREL2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               9
                                                             clus
vv                                                            KIRREL2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               163
                   vv
clus                 T1  T2  T3  T4
  KIRREL2 MUTATED     1   8   2   0
  KIRREL2 WILD-TYPE  35 108  12  12
D86V6, multiclass
    clus
vv   KIRREL2 MUTATED KIRREL2 WILD-TYPE
  T1               1                35
  T2               8               108
  T3               2                12
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  KIRREL2 MUTATED     5   4   2   0
  KIRREL2 WILD-TYPE 112  35  15   5
D86V7, multiclass
    clus
vv   KIRREL2 MUTATED KIRREL2 WILD-TYPE
  N0               5               112
  N1               4                35
  N2               2                15
  N3               0                 5
                   vv
clus                 M0  M1  MX
  KIRREL2 MUTATED     9   0   1
  KIRREL2 WILD-TYPE 156   3   5
D86V8, multiclass
    clus
vv   KIRREL2 MUTATED KIRREL2 WILD-TYPE
  M0               9               156
  M1               0                 3
  MX               1                 5
                   vv
clus                 I II III+IV
  KIRREL2 MUTATED    3  5      2
  KIRREL2 WILD-TYPE 94 33     39
D86V9, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  I                    3                94
  II                   5                33
  III+IV               2                39
D86V10, binary
                   cls
clus                  0   1
  KIRREL2 MUTATED     1  10
  KIRREL2 WILD-TYPE   3 164
[1] "tbl2"
                   cls
clus                [,1] [,2]
  KIRREL2 MUTATED      1   10
  KIRREL2 WILD-TYPE    3  164
     clus
vv    KIRREL2 MUTATED KIRREL2 WILD-TYPE
  NO                1                 3
  YES              10               164
D86V11, continuous
D86V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KIRREL2 MUTATED                                             5
  KIRREL2 WILD-TYPE                                          89
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KIRREL2 MUTATED                                        2              4
  KIRREL2 WILD-TYPE                                     41             24
                   vv
clus                LIFELONG NON-SMOKER
  KIRREL2 MUTATED                     0
  KIRREL2 WILD-TYPE                   8
D86V13, multiclass
                                             clus
vv                                            KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               5                89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            4                24
  LIFELONG NON-SMOKER                                       0                 8
D86V14, continuous

Clustering(87) Variable = MS4A14 MUTATION ANALYSIS
D87V1, survival
                  sevent
clus2               0  1
  MS4A14 MUTATED    6  6
  MS4A14 WILD-TYPE 91 64
  MS4A14 MUTATED MS4A14 WILD-TYPE 
              12              155 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
               6               64 
$`MS4A14 MUTATED`
TCGA-18-3409 TCGA-18-3415 TCGA-18-4083 TCGA-22-4595 TCGA-22-4604 TCGA-22-4613 
       79.46        59.51         6.15        24.13        13.12        11.77 
TCGA-39-5021 TCGA-43-3920 TCGA-43-5668 TCGA-60-2726 TCGA-66-2763 TCGA-66-2788 
       68.58        18.84         8.48        11.77         0.99        22.98 

$`MS4A14 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       90.51         3.02        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       34.78        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-5471 
       20.45        35.08        38.17        34.75        19.30        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 
       14.07        19.76         2.63        61.61        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 
        6.81         0.39         3.39        74.07        44.71        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        40.01         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  MS4A14 MUTATED MS4A14 WILD-TYPE 
            0.99             0.10 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
           79.46           173.79 
  MS4A14 MUTATED MS4A14 WILD-TYPE 
           15.98            17.88 
[1] "1.0 - 79.5 (16.0)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE"   "MS4A14 MUTATED" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"MS4A14 WILD-TYPE"   "MS4A14 MUTATED" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" "MS4A14 WILD-TYPE" 
[1] "hr=" "1.1"
D87V2, continuous
D87V3, binary
                  cls
clus                 0   1
  MS4A14 MUTATED     2  10
  MS4A14 WILD-TYPE  45 121
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A14 MUTATED      2   10
  MS4A14 WILD-TYPE   45  121
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  FEMALE              2               45
  MALE               10              121
D87V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  MS4A14 MUTATED                                       1
  MS4A14 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  MS4A14 MUTATED                                        0
  MS4A14 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  MS4A14 MUTATED                                                            11
  MS4A14 WILD-TYPE                                                         161
D87V5, multiclass
                                                             clus
vv                                                            MS4A14 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             11
                                                             clus
vv                                                            MS4A14 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              161
                  vv
clus                T1  T2  T3  T4
  MS4A14 MUTATED     3   8   1   0
  MS4A14 WILD-TYPE  33 108  13  12
D87V6, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  T1              3               33
  T2              8              108
  T3              1               13
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  MS4A14 MUTATED     7   4   1   0
  MS4A14 WILD-TYPE 110  35  16   5
D87V7, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  N0              7              110
  N1              4               35
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  MS4A14 MUTATED    11   0   0
  MS4A14 WILD-TYPE 154   3   6
D87V8, multiclass
    clus
vv   MS4A14 MUTATED MS4A14 WILD-TYPE
  M0             11              154
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  MS4A14 MUTATED    6  4      1
  MS4A14 WILD-TYPE 91 34     40
D87V9, multiclass
        clus
vv       MS4A14 MUTATED MS4A14 WILD-TYPE
  I                   6               91
  II                  4               34
  III+IV              1               40
D87V10, binary
                  cls
clus                 0   1
  MS4A14 MUTATED     1  11
  MS4A14 WILD-TYPE   3 163
[1] "tbl2"
                  cls
clus               [,1] [,2]
  MS4A14 MUTATED      1   11
  MS4A14 WILD-TYPE    3  163
     clus
vv    MS4A14 MUTATED MS4A14 WILD-TYPE
  NO               1                3
  YES             11              163
D87V11, continuous
D87V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  MS4A14 MUTATED                                             4
  MS4A14 WILD-TYPE                                          90
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  MS4A14 MUTATED                                        5              3
  MS4A14 WILD-TYPE                                     38             25
                  vv
clus               LIFELONG NON-SMOKER
  MS4A14 MUTATED                     0
  MS4A14 WILD-TYPE                   8
D87V13, multiclass
                                             clus
vv                                            MS4A14 MUTATED MS4A14 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              4               90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               38
  CURRENT SMOKER                                           3               25
  LIFELONG NON-SMOKER                                      0                8
D87V14, continuous

Clustering(88) Variable = TMEM195 MUTATION ANALYSIS
D88V1, survival
                   sevent
clus2                0  1
  TMEM195 MUTATED    5  3
  TMEM195 WILD-TYPE 92 67
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                8               159 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                3                67 
$`TMEM195 MUTATED`
TCGA-18-3421 TCGA-22-5491 TCGA-33-4566 TCGA-37-5819 TCGA-39-5039 TCGA-66-2744 
       43.76        56.32       173.79         3.39        17.88         0.99 
TCGA-66-2800 TCGA-85-6561 
       49.05         0.79 

$`TMEM195 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        3.95         0.43         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-85-6560 
       54.08         4.01         0.36 

  TMEM195 MUTATED TMEM195 WILD-TYPE 
             0.79              0.10 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
           173.79            141.34 
  TMEM195 MUTATED TMEM195 WILD-TYPE 
            30.82             16.96 
[1] "0.8 - 173.8 (30.8)" "0.1 - 141.3 (17.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM195 WILD-TYPE"   "TMEM195 MUTATED" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
  "TMEM195 MUTATED" "TMEM195 WILD-TYPE"   "TMEM195 MUTATED" 
[1] "hr=" "2.2"
D88V2, continuous
D88V3, binary
                   cls
clus                  0   1
  TMEM195 MUTATED     0   8
  TMEM195 WILD-TYPE  47 123
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      0    8
  TMEM195 WILD-TYPE   47  123
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  FEMALE               0                47
  MALE                 8               123
D88V4, continuous
[1] "Remove cluster labels:" "TMEM195 MUTATED"       
clus
  TMEM195 MUTATED TMEM195 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-21-5787        TCGA-22-4591 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4595        TCGA-22-4599        TCGA-22-4601 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4613        TCGA-22-5472        TCGA-22-5473 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5492 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-60-2698 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-60-2712        TCGA-60-2715        TCGA-60-2725        TCGA-60-2726 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723 
"TMEM195 WILD-TYPE" "TMEM195 WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TMEM195 MUTATED                                       0
  TMEM195 WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TMEM195 MUTATED                                        0
  TMEM195 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TMEM195 MUTATED                                                             8
  TMEM195 WILD-TYPE                                                         164
D88V5, multiclass
                                                             clus
vv                                                            TMEM195 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               8
                                                             clus
vv                                                            TMEM195 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               164
                   vv
clus                 T1  T2  T3  T4
  TMEM195 MUTATED     1   6   0   1
  TMEM195 WILD-TYPE  35 110  14  11
D88V6, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  T1               1                35
  T2               6               110
  T3               0                14
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  TMEM195 MUTATED     6   1   1   0
  TMEM195 WILD-TYPE 111  38  16   5
D88V7, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  N0               6               111
  N1               1                38
  N2               1                16
  N3               0                 5
                   vv
clus                 M0  M1  MX
  TMEM195 MUTATED     8   0   0
  TMEM195 WILD-TYPE 157   3   6
D88V8, multiclass
    clus
vv   TMEM195 MUTATED TMEM195 WILD-TYPE
  M0               8               157
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  TMEM195 MUTATED    3  3      2
  TMEM195 WILD-TYPE 94 35     39
D88V9, multiclass
        clus
vv       TMEM195 MUTATED TMEM195 WILD-TYPE
  I                    3                94
  II                   3                35
  III+IV               2                39
D88V10, binary
                   cls
clus                  0   1
  TMEM195 MUTATED     0   8
  TMEM195 WILD-TYPE   4 166
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM195 MUTATED      0    8
  TMEM195 WILD-TYPE    4  166
     clus
vv    TMEM195 MUTATED TMEM195 WILD-TYPE
  NO                0                 4
  YES               8               166
D88V11, continuous
D88V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TMEM195 MUTATED                                             4
  TMEM195 WILD-TYPE                                          90
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TMEM195 MUTATED                                        2              2
  TMEM195 WILD-TYPE                                     41             26
                   vv
clus                LIFELONG NON-SMOKER
  TMEM195 MUTATED                     0
  TMEM195 WILD-TYPE                   8
D88V13, multiclass
                                             clus
vv                                            TMEM195 MUTATED TMEM195 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    2                41
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                 8
D88V14, continuous

Clustering(89) Variable = TMEM90A MUTATION ANALYSIS
D89V1, survival
                   sevent
clus2                0  1
  TMEM90A MUTATED    3  1
  TMEM90A WILD-TYPE 94 69
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                4               163 
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                1                69 
$`TMEM90A MUTATED`
TCGA-18-3419 TCGA-18-4083 TCGA-37-3783 TCGA-51-4081 
        1.61         6.15         3.95         2.07 

$`TMEM90A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         0.39        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  TMEM90A MUTATED TMEM90A WILD-TYPE 
             1.61              0.10 
  TMEM90A MUTATED TMEM90A WILD-TYPE 
             6.15            173.79 
  TMEM90A MUTATED TMEM90A WILD-TYPE 
             3.01             18.84 
[1] "1.6 - 6.2 (3.0)"    "0.1 - 173.8 (18.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TMEM90A WILD-TYPE"   "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TMEM90A WILD-TYPE"   "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"TMEM90A WILD-TYPE"   "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE"   "TMEM90A MUTATED" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "TMEM90A MUTATED" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
[1] "hr=" "4.3"
D89V2, continuous
D89V3, binary
                   cls
clus                  0   1
  TMEM90A MUTATED     0   4
  TMEM90A WILD-TYPE  47 127
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM90A MUTATED      0    4
  TMEM90A WILD-TYPE   47  127
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  FEMALE               0                47
  MALE                 4               127
D89V4, continuous
[1] "Remove cluster labels:" "TMEM90A MUTATED"       
clus
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                1                35 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5787        TCGA-22-4591        TCGA-22-4593 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  TMEM90A MUTATED                                       0
  TMEM90A WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  TMEM90A MUTATED                                        0
  TMEM90A WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  TMEM90A MUTATED                                                             4
  TMEM90A WILD-TYPE                                                         168
D89V5, multiclass
                                                             clus
vv                                                            TMEM90A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               4
                                                             clus
vv                                                            TMEM90A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               168
                   vv
clus                 T1  T2  T3  T4
  TMEM90A MUTATED     0   3   1   0
  TMEM90A WILD-TYPE  36 113  13  12
D89V6, multiclass
    clus
vv   TMEM90A MUTATED TMEM90A WILD-TYPE
  T1               0                36
  T2               3               113
  T3               1                13
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  TMEM90A MUTATED     0   3   1   0
  TMEM90A WILD-TYPE 117  36  16   5
D89V7, multiclass
    clus
vv   TMEM90A MUTATED TMEM90A WILD-TYPE
  N0               0               117
  N1               3                36
  N2               1                16
  N3               0                 5
                   vv
clus                 M0  M1  MX
  TMEM90A MUTATED     4   0   0
  TMEM90A WILD-TYPE 161   3   6
D89V8, multiclass
    clus
vv   TMEM90A MUTATED TMEM90A WILD-TYPE
  M0               4               161
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  TMEM90A MUTATED    0  3      1
  TMEM90A WILD-TYPE 97 35     40
D89V9, multiclass
        clus
vv       TMEM90A MUTATED TMEM90A WILD-TYPE
  I                    0                97
  II                   3                35
  III+IV               1                40
D89V10, binary
                   cls
clus                  0   1
  TMEM90A MUTATED     0   4
  TMEM90A WILD-TYPE   4 170
[1] "tbl2"
                   cls
clus                [,1] [,2]
  TMEM90A MUTATED      0    4
  TMEM90A WILD-TYPE    4  170
     clus
vv    TMEM90A MUTATED TMEM90A WILD-TYPE
  NO                0                 4
  YES               4               170
D89V11, continuous
D89V12, continuous
[1] "Remove cluster labels:" "TMEM90A MUTATED"       
clus
  TMEM90A MUTATED TMEM90A WILD-TYPE 
                1               126 
       TCGA-18-3407        TCGA-18-3408        TCGA-18-3409        TCGA-18-3412 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-3414        TCGA-18-3415        TCGA-18-3417        TCGA-18-3421 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-18-4086        TCGA-18-4721        TCGA-21-1070        TCGA-21-1076 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-1077        TCGA-21-1078        TCGA-21-1081        TCGA-21-5782 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-21-5787        TCGA-22-1002        TCGA-22-1012        TCGA-22-1016 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4607        TCGA-22-4613        TCGA-22-5471 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5472        TCGA-22-5473        TCGA-22-5474        TCGA-22-5478 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5482        TCGA-22-5489        TCGA-22-5492 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-33-4533        TCGA-33-4547        TCGA-33-4583        TCGA-33-4586 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2608        TCGA-34-5234 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5928        TCGA-34-5929        TCGA-37-4133 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-37-4135        TCGA-37-5819        TCGA-39-5016        TCGA-39-5021 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5039        TCGA-43-2578        TCGA-43-3920 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-43-5668        TCGA-43-6143        TCGA-43-6647        TCGA-43-6771 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-56-1622        TCGA-56-5897        TCGA-56-6545        TCGA-56-6546 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2707        TCGA-60-2708        TCGA-60-2710 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2715        TCGA-60-2719 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2720        TCGA-60-2721        TCGA-60-2722        TCGA-60-2723 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-63-5131        TCGA-63-6202        TCGA-66-2727        TCGA-66-2734 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2791        TCGA-66-2792 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-66-2793        TCGA-66-2794        TCGA-66-2795        TCGA-66-2800 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561 
"TMEM90A WILD-TYPE" "TMEM90A WILD-TYPE" 
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  TMEM90A MUTATED                                             1
  TMEM90A WILD-TYPE                                          93
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  TMEM90A MUTATED                                        0              2
  TMEM90A WILD-TYPE                                     43             26
                   vv
clus                LIFELONG NON-SMOKER
  TMEM90A MUTATED                     0
  TMEM90A WILD-TYPE                   8
D89V13, multiclass
                                             clus
vv                                            TMEM90A MUTATED TMEM90A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               1                93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    0                43
  CURRENT SMOKER                                            2                26
  LIFELONG NON-SMOKER                                       0                 8
D89V14, continuous

Clustering(90) Variable = ZFP42 MUTATION ANALYSIS
D90V1, survival
                 sevent
clus2              0  1
  ZFP42 MUTATED    6  1
  ZFP42 WILD-TYPE 91 69
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              7             160 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
              1              69 
$`ZFP42 MUTATED`
TCGA-18-5592 TCGA-22-5471 TCGA-34-2608 TCGA-37-4141 TCGA-60-2708 TCGA-66-2734 
        3.02        31.69        32.84         0.39        68.45        43.10 
TCGA-66-2759 
       25.02 

$`ZFP42 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       34.75        13.12        19.30        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        3.95         0.43         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
        1.02        10.22        21.70        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  ZFP42 MUTATED ZFP42 WILD-TYPE 
           0.39            0.10 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
          68.45          173.79 
  ZFP42 MUTATED ZFP42 WILD-TYPE 
          31.69           16.78 
[1] "0.4 - 68.5 (31.7)"  "0.1 - 173.8 (16.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZFP42 WILD-TYPE"   "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZFP42 WILD-TYPE"   "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"ZFP42 WILD-TYPE"   "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "ZFP42 MUTATED" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE"   "ZFP42 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" "ZFP42 WILD-TYPE" 
[1] "hr=" "3.5"
D90V2, continuous
D90V3, binary
                 cls
clus                0   1
  ZFP42 MUTATED     3   5
  ZFP42 WILD-TYPE  44 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP42 MUTATED      3    5
  ZFP42 WILD-TYPE   44  126
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D90V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  ZFP42 MUTATED                                       0
  ZFP42 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  ZFP42 MUTATED                                        0
  ZFP42 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  ZFP42 MUTATED                                                             8
  ZFP42 WILD-TYPE                                                         164
D90V5, multiclass
                                                             clus
vv                                                            ZFP42 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            ZFP42 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  ZFP42 MUTATED     1   5   1   1
  ZFP42 WILD-TYPE  35 111  13  11
D90V6, multiclass
    clus
vv   ZFP42 MUTATED ZFP42 WILD-TYPE
  T1             1              35
  T2             5             111
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  ZFP42 MUTATED     6   1   1   0
  ZFP42 WILD-TYPE 111  38  16   5
D90V7, multiclass
    clus
vv   ZFP42 MUTATED ZFP42 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  ZFP42 MUTATED     8   0   0
  ZFP42 WILD-TYPE 157   3   6
D90V8, multiclass
    clus
vv   ZFP42 MUTATED ZFP42 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  ZFP42 MUTATED    4  3      1
  ZFP42 WILD-TYPE 93 35     40
D90V9, multiclass
        clus
vv       ZFP42 MUTATED ZFP42 WILD-TYPE
  I                  4              93
  II                 3              35
  III+IV             1              40
D90V10, binary
                 cls
clus                0   1
  ZFP42 MUTATED     1   7
  ZFP42 WILD-TYPE   3 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  ZFP42 MUTATED      1    7
  ZFP42 WILD-TYPE    3  167
     clus
vv    ZFP42 MUTATED ZFP42 WILD-TYPE
  NO              1               3
  YES             7             167
D90V11, continuous
D90V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  ZFP42 MUTATED                                             4
  ZFP42 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  ZFP42 MUTATED                                        3              0
  ZFP42 WILD-TYPE                                     40             28
                 vv
clus              LIFELONG NON-SMOKER
  ZFP42 MUTATED                     1
  ZFP42 WILD-TYPE                   7
D90V13, multiclass
                                             clus
vv                                            ZFP42 MUTATED ZFP42 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D90V14, continuous

Clustering(91) Variable = LEPROT MUTATION ANALYSIS
D91V1, survival
                  sevent
clus2               0  1
  LEPROT MUTATED    1  3
  LEPROT WILD-TYPE 96 67
  LEPROT MUTATED LEPROT WILD-TYPE 
               4              163 
  LEPROT MUTATED LEPROT WILD-TYPE 
               3               67 
$`LEPROT MUTATED`
TCGA-22-1002 TCGA-22-4595 TCGA-66-2727 TCGA-66-2744 
        4.31        24.13        16.96         0.99 

$`LEPROT WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1011 
       31.63        29.85        21.57        10.82         7.33         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 
       14.10        27.02        20.45        35.08        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 
       23.64        11.77        43.10        21.07         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 
        1.94        25.97        40.01        22.98         4.04         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  LEPROT MUTATED LEPROT WILD-TYPE 
            0.99             0.10 
  LEPROT MUTATED LEPROT WILD-TYPE 
           24.13           173.79 
  LEPROT MUTATED LEPROT WILD-TYPE 
          10.635           18.080 
[1] "1.0 - 24.1 (10.6)"  "0.1 - 173.8 (18.1)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LEPROT WILD-TYPE"   "LEPROT MUTATED" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
[1] "hr=" "3.6"
D91V2, continuous
D91V3, binary
                  cls
clus                 0   1
  LEPROT MUTATED     1   3
  LEPROT WILD-TYPE  46 128
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LEPROT MUTATED      1    3
  LEPROT WILD-TYPE   46  128
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  FEMALE              1               46
  MALE                3              128
D91V4, continuous
[1] "Remove cluster labels:" "LEPROT MUTATED"        
clus
  LEPROT MUTATED LEPROT WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"LEPROT WILD-TYPE" "LEPROT WILD-TYPE" "LEPROT WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  LEPROT MUTATED                                       0
  LEPROT WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  LEPROT MUTATED                                        0
  LEPROT WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LEPROT MUTATED                                                             4
  LEPROT WILD-TYPE                                                         168
D91V5, multiclass
                                                             clus
vv                                                            LEPROT MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              4
                                                             clus
vv                                                            LEPROT WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              168
                  vv
clus                T1  T2  T3  T4
  LEPROT MUTATED     1   2   1   0
  LEPROT WILD-TYPE  35 114  13  12
D91V6, multiclass
    clus
vv   LEPROT MUTATED LEPROT WILD-TYPE
  T1              1               35
  T2              2              114
  T3              1               13
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  LEPROT MUTATED     2   1   1   0
  LEPROT WILD-TYPE 115  38  16   5
D91V7, multiclass
    clus
vv   LEPROT MUTATED LEPROT WILD-TYPE
  N0              2              115
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  LEPROT MUTATED     3   0   0
  LEPROT WILD-TYPE 162   3   6
D91V8, multiclass
    clus
vv   LEPROT MUTATED LEPROT WILD-TYPE
  M0              3              162
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  LEPROT MUTATED    2  1      1
  LEPROT WILD-TYPE 95 37     40
D91V9, multiclass
        clus
vv       LEPROT MUTATED LEPROT WILD-TYPE
  I                   2               95
  II                  1               37
  III+IV              1               40
D91V10, binary
                  cls
clus                 0   1
  LEPROT MUTATED     1   3
  LEPROT WILD-TYPE   3 171
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LEPROT MUTATED      1    3
  LEPROT WILD-TYPE    3  171
     clus
vv    LEPROT MUTATED LEPROT WILD-TYPE
  NO               1                3
  YES              3              171
D91V11, continuous
D91V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LEPROT MUTATED                                             3
  LEPROT WILD-TYPE                                          91
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LEPROT MUTATED                                        0              1
  LEPROT WILD-TYPE                                     43             27
                  vv
clus               LIFELONG NON-SMOKER
  LEPROT MUTATED                     0
  LEPROT WILD-TYPE                   8
D91V13, multiclass
                                             clus
vv                                            LEPROT MUTATED LEPROT WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D91V14, continuous

Clustering(92) Variable = LRRTM3 MUTATION ANALYSIS
D92V1, survival
                  sevent
clus2               0  1
  LRRTM3 MUTATED    4  3
  LRRTM3 WILD-TYPE 93 67
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               7              160 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               3               67 
$`LRRTM3 MUTATED`
TCGA-22-5471 TCGA-22-5473 TCGA-33-4538 TCGA-34-5232 TCGA-51-4080 TCGA-66-2767 
       31.69        63.52        97.94        51.78         0.39         2.01 
TCGA-66-2777 
        2.01 

$`LRRTM3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 
       38.17        34.75        13.12        19.30        11.77        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 
       62.86        56.32        16.60        82.98       114.05        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       61.61        32.84        50.24        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
            0.39             0.10 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
           97.94           173.79 
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
           31.69            17.42 
[1] "0.4 - 97.9 (31.7)"  "0.1 - 173.8 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE"   "LRRTM3 MUTATED" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "LRRTM3 MUTATED" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
[1] "hr=" "1.3"
D92V2, continuous
D92V3, binary
                  cls
clus                 0   1
  LRRTM3 MUTATED     1   7
  LRRTM3 WILD-TYPE  46 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM3 MUTATED      1    7
  LRRTM3 WILD-TYPE   46  124
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  FEMALE              1               46
  MALE                7              124
D92V4, continuous
[1] "Remove cluster labels:" "LRRTM3 MUTATED"        
clus
  LRRTM3 MUTATED LRRTM3 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5474 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" "LRRTM3 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  LRRTM3 MUTATED                                       1
  LRRTM3 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  LRRTM3 MUTATED                                        0
  LRRTM3 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LRRTM3 MUTATED                                                             7
  LRRTM3 WILD-TYPE                                                         165
D92V5, multiclass
                                                             clus
vv                                                            LRRTM3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              7
                                                             clus
vv                                                            LRRTM3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              165
                  vv
clus                T1  T2  T3  T4
  LRRTM3 MUTATED     1   5   1   1
  LRRTM3 WILD-TYPE  35 111  13  11
D92V6, multiclass
    clus
vv   LRRTM3 MUTATED LRRTM3 WILD-TYPE
  T1              1               35
  T2              5              111
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  LRRTM3 MUTATED     3   3   1   1
  LRRTM3 WILD-TYPE 114  36  16   4
D92V7, multiclass
    clus
vv   LRRTM3 MUTATED LRRTM3 WILD-TYPE
  N0              3              114
  N1              3               36
  N2              1               16
  N3              1                4
                  vv
clus                M0  M1  MX
  LRRTM3 MUTATED     7   0   0
  LRRTM3 WILD-TYPE 158   3   6
D92V8, multiclass
    clus
vv   LRRTM3 MUTATED LRRTM3 WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  LRRTM3 MUTATED    3  2      3
  LRRTM3 WILD-TYPE 94 36     38
D92V9, multiclass
        clus
vv       LRRTM3 MUTATED LRRTM3 WILD-TYPE
  I                   3               94
  II                  2               36
  III+IV              3               38
D92V10, binary
                  cls
clus                 0   1
  LRRTM3 MUTATED     1   7
  LRRTM3 WILD-TYPE   3 167
[1] "tbl2"
                  cls
clus               [,1] [,2]
  LRRTM3 MUTATED      1    7
  LRRTM3 WILD-TYPE    3  167
     clus
vv    LRRTM3 MUTATED LRRTM3 WILD-TYPE
  NO               1                3
  YES              7              167
D92V11, continuous
D92V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LRRTM3 MUTATED                                             5
  LRRTM3 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LRRTM3 MUTATED                                        1              1
  LRRTM3 WILD-TYPE                                     42             27
                  vv
clus               LIFELONG NON-SMOKER
  LRRTM3 MUTATED                     0
  LRRTM3 WILD-TYPE                   8
D92V13, multiclass
                                             clus
vv                                            LRRTM3 MUTATED LRRTM3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D92V14, continuous

Clustering(93) Variable = OR4N4 MUTATION ANALYSIS
D93V1, survival
                 sevent
clus2              0  1
  OR4N4 MUTATED    3  4
  OR4N4 WILD-TYPE 94 66
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              7             160 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              4              66 
$`OR4N4 MUTATED`
TCGA-18-3421 TCGA-21-1071 TCGA-22-4613 TCGA-51-4079 TCGA-66-2767 TCGA-66-2771 
       43.76        46.88        11.77         0.39         2.01        19.00 
TCGA-66-2791 
        5.03 

$`OR4N4 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.59         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        1.02         2.01        23.01         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR4N4 MUTATED OR4N4 WILD-TYPE 
           0.39            0.10 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
          46.88          173.79 
  OR4N4 MUTATED OR4N4 WILD-TYPE 
          11.77           17.98 
[1] "0.4 - 46.9 (11.8)"  "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
  "OR4N4 MUTATED" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" "OR4N4 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE"   "OR4N4 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
[1] "hr=" "1.9"
D93V2, continuous
D93V3, binary
                 cls
clus                0   1
  OR4N4 MUTATED     2   7
  OR4N4 WILD-TYPE  45 124
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N4 MUTATED      2    7
  OR4N4 WILD-TYPE   45  124
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  FEMALE             2              45
  MALE               7             124
D93V4, continuous
[1] "Remove cluster labels:" "OR4N4 MUTATED"         
clus
  OR4N4 MUTATED OR4N4 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722 
"OR4N4 WILD-TYPE" "OR4N4 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR4N4 MUTATED                                       0
  OR4N4 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR4N4 MUTATED                                        1
  OR4N4 WILD-TYPE                                      0
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4N4 MUTATED                                                             8
  OR4N4 WILD-TYPE                                                         164
D93V5, multiclass
                                                             clus
vv                                                            OR4N4 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            OR4N4 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  OR4N4 MUTATED     2   6   1   0
  OR4N4 WILD-TYPE  34 110  13  12
D93V6, multiclass
    clus
vv   OR4N4 MUTATED OR4N4 WILD-TYPE
  T1             2              34
  T2             6             110
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR4N4 MUTATED     6   1   0   2
  OR4N4 WILD-TYPE 111  38  17   3
D93V7, multiclass
    clus
vv   OR4N4 MUTATED OR4N4 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             0              17
  N3             2               3
                 vv
clus               M0  M1  MX
  OR4N4 MUTATED     8   0   0
  OR4N4 WILD-TYPE 157   3   6
D93V8, multiclass
    clus
vv   OR4N4 MUTATED OR4N4 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR4N4 MUTATED    5  2      2
  OR4N4 WILD-TYPE 92 36     39
D93V9, multiclass
        clus
vv       OR4N4 MUTATED OR4N4 WILD-TYPE
  I                  5              92
  II                 2              36
  III+IV             2              39
D93V10, binary
                 cls
clus                0   1
  OR4N4 MUTATED     0   9
  OR4N4 WILD-TYPE   4 165
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR4N4 MUTATED      0    9
  OR4N4 WILD-TYPE    4  165
     clus
vv    OR4N4 MUTATED OR4N4 WILD-TYPE
  NO              0               4
  YES             9             165
D93V11, continuous
D93V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4N4 MUTATED                                             5
  OR4N4 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4N4 MUTATED                                        2              1
  OR4N4 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  OR4N4 MUTATED                     1
  OR4N4 WILD-TYPE                   7
D93V13, multiclass
                                             clus
vv                                            OR4N4 MUTATED OR4N4 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     1               7
D93V14, continuous

Clustering(94) Variable = SNAI1 MUTATION ANALYSIS
D94V1, survival
                 sevent
clus2              0  1
  SNAI1 MUTATED    2  1
  SNAI1 WILD-TYPE 95 69
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              3             164 
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              1              69 
$`SNAI1 MUTATED`
TCGA-18-3412 TCGA-18-3419 TCGA-37-4141 
       11.34         1.61         0.39 

$`SNAI1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34        24.92        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  SNAI1 MUTATED SNAI1 WILD-TYPE 
           0.39            0.10 
  SNAI1 MUTATED SNAI1 WILD-TYPE 
          11.34          173.79 
  SNAI1 MUTATED SNAI1 WILD-TYPE 
           1.61           18.46 
[1] "0.4 - 11.3 (1.6)"   "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" "SNAI1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" "SNAI1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" "SNAI1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE"   "SNAI1 MUTATED" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
[1] "hr=" "4.3"
D94V2, continuous
D94V3, binary
                 cls
clus                0   1
  SNAI1 MUTATED     1   3
  SNAI1 WILD-TYPE  46 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SNAI1 MUTATED      1    3
  SNAI1 WILD-TYPE   46  128
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  FEMALE             1              46
  MALE               3             128
D94V4, continuous
[1] "Remove cluster labels:" "SNAI1 MUTATED"         
clus
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SNAI1 MUTATED                                       0
  SNAI1 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SNAI1 MUTATED                                        0
  SNAI1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SNAI1 MUTATED                                                             4
  SNAI1 WILD-TYPE                                                         168
D94V5, multiclass
                                                             clus
vv                                                            SNAI1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             4
                                                             clus
vv                                                            SNAI1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             168
                 vv
clus               T1  T2  T3  T4
  SNAI1 MUTATED     2   2   0   0
  SNAI1 WILD-TYPE  34 114  14  12
D94V6, multiclass
    clus
vv   SNAI1 MUTATED SNAI1 WILD-TYPE
  T1             2              34
  T2             2             114
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  SNAI1 MUTATED     3   1   0   0
  SNAI1 WILD-TYPE 114  38  17   5
D94V7, multiclass
    clus
vv   SNAI1 MUTATED SNAI1 WILD-TYPE
  N0             3             114
  N1             1              38
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  SNAI1 MUTATED     4   0   0
  SNAI1 WILD-TYPE 161   3   6
D94V8, multiclass
    clus
vv   SNAI1 MUTATED SNAI1 WILD-TYPE
  M0             4             161
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  SNAI1 MUTATED    3  1      0
  SNAI1 WILD-TYPE 94 37     41
D94V9, multiclass
        clus
vv       SNAI1 MUTATED SNAI1 WILD-TYPE
  I                  3              94
  II                 1              37
  III+IV             0              41
D94V10, binary
                 cls
clus                0   1
  SNAI1 MUTATED     0   4
  SNAI1 WILD-TYPE   4 170
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SNAI1 MUTATED      0    4
  SNAI1 WILD-TYPE    4  170
     clus
vv    SNAI1 MUTATED SNAI1 WILD-TYPE
  NO              0               4
  YES             4             170
D94V11, continuous
[1] "Remove cluster labels:" "SNAI1 MUTATED"         
clus
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              2             144 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3411      TCGA-18-3414      TCGA-18-3415      TCGA-18-3416 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3417      TCGA-18-3421      TCGA-18-4083      TCGA-18-4086 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-5592      TCGA-21-1070      TCGA-21-1071      TCGA-21-1076 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1077      TCGA-21-1078      TCGA-21-1081      TCGA-21-5782 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-0944 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1002      TCGA-22-1011      TCGA-22-1012      TCGA-22-1016 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4607      TCGA-22-4613      TCGA-22-5471 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5485      TCGA-22-5489 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5491      TCGA-22-5492      TCGA-33-4532      TCGA-33-4533 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4538      TCGA-33-4547      TCGA-33-4566      TCGA-33-4582 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-33-6737      TCGA-34-2596 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-2600      TCGA-34-2608      TCGA-34-5231      TCGA-34-5240 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5241      TCGA-34-5928      TCGA-34-5929      TCGA-37-4133 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5016      TCGA-39-5019 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5021      TCGA-39-5022      TCGA-39-5024      TCGA-39-5027 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-39-5039 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-3920      TCGA-43-5668 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6143      TCGA-43-6647      TCGA-43-6770      TCGA-43-6771 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-51-4079      TCGA-51-4081      TCGA-56-1622      TCGA-60-2707 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-5131 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2757 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
D94V12, continuous
[1] "Remove cluster labels:" "SNAI1 MUTATED"         
clus
  SNAI1 MUTATED SNAI1 WILD-TYPE 
              2             125 
     TCGA-18-3407      TCGA-18-3408      TCGA-18-3409      TCGA-18-3414 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3417      TCGA-18-3421      TCGA-18-4086 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-18-4721      TCGA-21-1070      TCGA-21-1076      TCGA-21-1077 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-21-1078      TCGA-21-1081      TCGA-21-5782      TCGA-21-5787 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-1002      TCGA-22-1012      TCGA-22-1016      TCGA-22-4593 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-4607      TCGA-22-4613      TCGA-22-5471      TCGA-22-5472 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5478      TCGA-22-5480 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5489      TCGA-22-5492      TCGA-33-4533 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4583      TCGA-33-4586      TCGA-34-2596 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-2600      TCGA-34-2608      TCGA-34-5234      TCGA-34-5241 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-34-5928      TCGA-34-5929      TCGA-37-4133      TCGA-37-4135 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5021      TCGA-39-5022 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-2578      TCGA-43-3920      TCGA-43-5668 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-43-6143      TCGA-43-6647      TCGA-43-6771      TCGA-46-6025 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-46-6026      TCGA-51-4079      TCGA-51-4080      TCGA-56-1622 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-6545      TCGA-56-6546      TCGA-60-2698 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2710      TCGA-60-2711 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-63-5128      TCGA-63-5131 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2786      TCGA-66-2787      TCGA-66-2788 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2789      TCGA-66-2791      TCGA-66-2792      TCGA-66-2793 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800      TCGA-85-6560 
"SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" "SNAI1 WILD-TYPE" 
     TCGA-85-6561 
"SNAI1 WILD-TYPE" 
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SNAI1 MUTATED                                             1
  SNAI1 WILD-TYPE                                          93
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SNAI1 MUTATED                                        2              0
  SNAI1 WILD-TYPE                                     41             28
                 vv
clus              LIFELONG NON-SMOKER
  SNAI1 MUTATED                     1
  SNAI1 WILD-TYPE                   7
D94V13, multiclass
                                             clus
vv                                            SNAI1 MUTATED SNAI1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D94V14, continuous

Clustering(95) Variable = APOBEC1 MUTATION ANALYSIS
D95V1, survival
                   sevent
clus2                0  1
  APOBEC1 MUTATED    3  3
  APOBEC1 WILD-TYPE 94 67
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                6               161 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                3                67 
$`APOBEC1 MUTATED`
TCGA-21-5787 TCGA-22-1016 TCGA-34-5236 TCGA-60-2723 TCGA-66-2785 TCGA-85-6560 
       10.82        27.02         9.04        22.78         1.94         0.36 

$`APOBEC1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       31.63        29.85        21.57         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
        0.79        17.88        18.08        11.57        18.84         8.48 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        7.00         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.79 

  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
             0.36              0.10 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
            27.02            173.79 
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
             9.93             18.08 
[1] "0.4 - 27.0 (9.9)"   "0.1 - 173.8 (18.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
  "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"APOBEC1 WILD-TYPE"   "APOBEC1 MUTATED" "APOBEC1 WILD-TYPE" 
[1] "hr=" "2.5"
D95V2, continuous
D95V3, binary
                   cls
clus                  0   1
  APOBEC1 MUTATED     1   6
  APOBEC1 WILD-TYPE  46 125
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APOBEC1 MUTATED      1    6
  APOBEC1 WILD-TYPE   46  125
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  FEMALE               1                46
  MALE                 6               125
D95V4, continuous
[1] "Remove cluster labels:" "APOBEC1 MUTATED"       
clus
  APOBEC1 MUTATED APOBEC1 WILD-TYPE 
                2                34 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3414 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-18-3419        TCGA-21-5782        TCGA-22-4591        TCGA-22-4593 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6723 
"APOBEC1 WILD-TYPE" "APOBEC1 WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  APOBEC1 MUTATED                                       0
  APOBEC1 WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  APOBEC1 MUTATED                                        0
  APOBEC1 WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  APOBEC1 MUTATED                                                             7
  APOBEC1 WILD-TYPE                                                         165
D95V5, multiclass
                                                             clus
vv                                                            APOBEC1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               7
                                                             clus
vv                                                            APOBEC1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               165
                   vv
clus                 T1  T2  T3  T4
  APOBEC1 MUTATED     0   5   2   0
  APOBEC1 WILD-TYPE  36 111  12  12
D95V6, multiclass
    clus
vv   APOBEC1 MUTATED APOBEC1 WILD-TYPE
  T1               0                36
  T2               5               111
  T3               2                12
  T4               0                12
                   vv
clus                 N0  N1  N2  N3
  APOBEC1 MUTATED     4   2   1   0
  APOBEC1 WILD-TYPE 113  37  16   5
D95V7, multiclass
    clus
vv   APOBEC1 MUTATED APOBEC1 WILD-TYPE
  N0               4               113
  N1               2                37
  N2               1                16
  N3               0                 5
                   vv
clus                 M0  M1  MX
  APOBEC1 MUTATED     7   0   0
  APOBEC1 WILD-TYPE 158   3   6
D95V8, multiclass
    clus
vv   APOBEC1 MUTATED APOBEC1 WILD-TYPE
  M0               7               158
  M1               0                 3
  MX               0                 6
                   vv
clus                 I II III+IV
  APOBEC1 MUTATED    3  1      3
  APOBEC1 WILD-TYPE 94 37     38
D95V9, multiclass
        clus
vv       APOBEC1 MUTATED APOBEC1 WILD-TYPE
  I                    3                94
  II                   1                37
  III+IV               3                38
D95V10, binary
                   cls
clus                  0   1
  APOBEC1 MUTATED     1   6
  APOBEC1 WILD-TYPE   3 168
[1] "tbl2"
                   cls
clus                [,1] [,2]
  APOBEC1 MUTATED      1    6
  APOBEC1 WILD-TYPE    3  168
     clus
vv    APOBEC1 MUTATED APOBEC1 WILD-TYPE
  NO                1                 3
  YES               6               168
D95V11, continuous
D95V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  APOBEC1 MUTATED                                             4
  APOBEC1 WILD-TYPE                                          90
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  APOBEC1 MUTATED                                        1              0
  APOBEC1 WILD-TYPE                                     42             28
                   vv
clus                LIFELONG NON-SMOKER
  APOBEC1 MUTATED                     1
  APOBEC1 WILD-TYPE                   7
D95V13, multiclass
                                             clus
vv                                            APOBEC1 MUTATED APOBEC1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               4                90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       1                 7
D95V14, continuous

Clustering(96) Variable = BAGE2 MUTATION ANALYSIS
D96V1, survival
                 sevent
clus2              0  1
  BAGE2 MUTATED    2  1
  BAGE2 WILD-TYPE 95 69
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              3             164 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              1              69 
$`BAGE2 MUTATED`
TCGA-22-4604 TCGA-37-4133 TCGA-60-2725 
       13.12         7.82        23.64 

$`BAGE2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         0.43         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 
        0.10         2.04         1.02        10.22        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  BAGE2 MUTATED BAGE2 WILD-TYPE 
           7.82            0.10 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          23.64          173.79 
  BAGE2 MUTATED BAGE2 WILD-TYPE 
          13.12           17.98 
[1] "7.8 - 23.6 (13.1)"  "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"BAGE2 WILD-TYPE"   "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
  "BAGE2 MUTATED" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
[1] "hr=" "1.2"
D96V2, continuous
D96V3, binary
                 cls
clus                0   1
  BAGE2 MUTATED     0   3
  BAGE2 WILD-TYPE  47 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      0    3
  BAGE2 WILD-TYPE   47  128
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  FEMALE             0              47
  MALE               3             128
D96V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  BAGE2 MUTATED                                       0
  BAGE2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  BAGE2 MUTATED                                        0
  BAGE2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  BAGE2 MUTATED                                                             3
  BAGE2 WILD-TYPE                                                         169
D96V5, multiclass
                                                             clus
vv                                                            BAGE2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             3
                                                             clus
vv                                                            BAGE2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             169
                 vv
clus               T1  T2  T3  T4
  BAGE2 MUTATED     0   2   0   1
  BAGE2 WILD-TYPE  36 114  14  11
D96V6, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  T1             0              36
  T2             2             114
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  BAGE2 MUTATED     2   1   0   0
  BAGE2 WILD-TYPE 115  38  17   5
D96V7, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  N0             2             115
  N1             1              38
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  BAGE2 MUTATED     3   0   0
  BAGE2 WILD-TYPE 162   3   6
D96V8, multiclass
    clus
vv   BAGE2 MUTATED BAGE2 WILD-TYPE
  M0             3             162
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  BAGE2 MUTATED    1  1      1
  BAGE2 WILD-TYPE 96 37     40
D96V9, multiclass
        clus
vv       BAGE2 MUTATED BAGE2 WILD-TYPE
  I                  1              96
  II                 1              37
  III+IV             1              40
D96V10, binary
                 cls
clus                0   1
  BAGE2 MUTATED     0   3
  BAGE2 WILD-TYPE   4 171
[1] "tbl2"
                 cls
clus              [,1] [,2]
  BAGE2 MUTATED      0    3
  BAGE2 WILD-TYPE    4  171
     clus
vv    BAGE2 MUTATED BAGE2 WILD-TYPE
  NO              0               4
  YES             3             171
D96V11, continuous
D96V12, continuous
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2             125 
     TCGA-18-3407      TCGA-18-3408      TCGA-18-3409      TCGA-18-3412 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3414      TCGA-18-3415      TCGA-18-3417      TCGA-18-3419 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4086      TCGA-18-4721      TCGA-21-1070 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-1002      TCGA-22-1012 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4593      TCGA-22-4607      TCGA-22-4613 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5471      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5489 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4583 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4586      TCGA-34-2596      TCGA-34-2600      TCGA-34-2608 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-34-5234      TCGA-34-5241      TCGA-34-5928      TCGA-34-5929 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5016      TCGA-39-5021 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5039      TCGA-43-2578      TCGA-43-3920 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-5668      TCGA-43-6143      TCGA-43-6647      TCGA-43-6771 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-1622      TCGA-56-5897      TCGA-56-6545      TCGA-56-6546 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2707      TCGA-60-2708      TCGA-60-2710 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2715      TCGA-60-2719 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2726      TCGA-63-5128      TCGA-63-5131 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2786      TCGA-66-2787      TCGA-66-2788 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2789      TCGA-66-2791      TCGA-66-2792      TCGA-66-2793 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800      TCGA-85-6560 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-85-6561 
"BAGE2 WILD-TYPE" 
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  BAGE2 MUTATED                                             0
  BAGE2 WILD-TYPE                                          94
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  BAGE2 MUTATED                                        2              1
  BAGE2 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  BAGE2 MUTATED                     0
  BAGE2 WILD-TYPE                   8
D96V13, multiclass
                                             clus
vv                                            BAGE2 MUTATED BAGE2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             0              94
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D96V14, continuous
[1] "Remove cluster labels:" "BAGE2 MUTATED"         
clus
  BAGE2 MUTATED BAGE2 WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5782 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-21-5786      TCGA-21-5787      TCGA-22-0944      TCGA-22-1002 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-1012      TCGA-22-1016      TCGA-22-4591 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-4613      TCGA-22-5472 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5480      TCGA-22-5482 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4582 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-34-5240      TCGA-34-5241 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5021      TCGA-39-5022 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-39-5037      TCGA-39-5039      TCGA-43-2578      TCGA-43-3394 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-3920      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-43-6771      TCGA-56-1622      TCGA-56-5898      TCGA-56-6545 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2707      TCGA-60-2708      TCGA-60-2709 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2713 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2715      TCGA-60-2719      TCGA-60-2720      TCGA-60-2721 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-60-2723      TCGA-60-2724      TCGA-60-2726      TCGA-63-6202 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2786 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" "BAGE2 WILD-TYPE" 

Clustering(97) Variable = CD5L MUTATION ANALYSIS
D97V1, survival
                sevent
clus2             0  1
  CD5L MUTATED    5  3
  CD5L WILD-TYPE 92 67
  CD5L MUTATED CD5L WILD-TYPE 
             8            159 
  CD5L MUTATED CD5L WILD-TYPE 
             3             67 
$`CD5L MUTATED`
TCGA-22-5472 TCGA-22-5473 TCGA-34-5231 TCGA-34-5236 TCGA-56-6546 TCGA-66-2742 
       64.90        63.52        50.24         9.04         1.02        21.07 
TCGA-66-2768 TCGA-66-2771 
        2.01        19.00 

$`CD5L WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
        2.63        61.61        32.84        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       43.10         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  CD5L MUTATED CD5L WILD-TYPE 
          1.02           0.10 
  CD5L MUTATED CD5L WILD-TYPE 
         64.90         173.79 
  CD5L MUTATED CD5L WILD-TYPE 
        20.035         16.960 
[1] "1.0 - 64.9 (20.0)"  "0.1 - 173.8 (17.0)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "CD5L MUTATED" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "CD5L MUTATED" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"CD5L WILD-TYPE" "CD5L WILD-TYPE"   "CD5L MUTATED"   "CD5L MUTATED" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
  "CD5L MUTATED" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
  "CD5L MUTATED" "CD5L WILD-TYPE"   "CD5L MUTATED" "CD5L WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
[1] "hr=" "1.3"
D97V2, continuous
D97V3, binary
                cls
clus               0   1
  CD5L MUTATED     0   8
  CD5L WILD-TYPE  47 123
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      0    8
  CD5L WILD-TYPE   47  123
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  FEMALE            0             47
  MALE              8            123
D97V4, continuous
[1] "Remove cluster labels:" "CD5L MUTATED"          
clus
  CD5L MUTATED CD5L WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5474     TCGA-22-5477 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5478     TCGA-22-5480     TCGA-22-5482     TCGA-22-5485 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-22-5489     TCGA-22-5491     TCGA-22-5492     TCGA-34-5234 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-37-4133     TCGA-37-4135     TCGA-37-5819     TCGA-60-2698 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" "CD5L WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"CD5L WILD-TYPE" "CD5L WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CD5L MUTATED                                       0
  CD5L WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CD5L MUTATED                                        0
  CD5L WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CD5L MUTATED                                                             8
  CD5L WILD-TYPE                                                         164
D97V5, multiclass
                                                             clus
vv                                                            CD5L MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            8
                                                             clus
vv                                                            CD5L WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            164
                vv
clus              T1  T2  T3  T4
  CD5L MUTATED     1   5   2   0
  CD5L WILD-TYPE  35 111  12  12
D97V6, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  T1            1             35
  T2            5            111
  T3            2             12
  T4            0             12
                vv
clus              N0  N1  N2  N3
  CD5L MUTATED     5   3   0   0
  CD5L WILD-TYPE 112  36  17   5
D97V7, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  N0            5            112
  N1            3             36
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  CD5L MUTATED     6   1   1
  CD5L WILD-TYPE 159   2   5
D97V8, multiclass
    clus
vv   CD5L MUTATED CD5L WILD-TYPE
  M0            6            159
  M1            1              2
  MX            1              5
                vv
clus              I II III+IV
  CD5L MUTATED    3  3      1
  CD5L WILD-TYPE 94 35     40
D97V9, multiclass
        clus
vv       CD5L MUTATED CD5L WILD-TYPE
  I                 3             94
  II                3             35
  III+IV            1             40
D97V10, binary
                cls
clus               0   1
  CD5L MUTATED     0   8
  CD5L WILD-TYPE   4 166
[1] "tbl2"
                cls
clus             [,1] [,2]
  CD5L MUTATED      0    8
  CD5L WILD-TYPE    4  166
     clus
vv    CD5L MUTATED CD5L WILD-TYPE
  NO             0              4
  YES            8            166
D97V11, continuous
D97V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CD5L MUTATED                                             3
  CD5L WILD-TYPE                                          91
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CD5L MUTATED                                        2              0
  CD5L WILD-TYPE                                     41             28
                vv
clus             LIFELONG NON-SMOKER
  CD5L MUTATED                     2
  CD5L WILD-TYPE                   6
D97V13, multiclass
                                             clus
vv                                            CD5L MUTATED CD5L WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    2              6
D97V14, continuous

Clustering(98) Variable = LIN37 MUTATION ANALYSIS
D98V1, survival
                 sevent
clus2              0  1
  LIN37 MUTATED    3  0
  LIN37 WILD-TYPE 94 70
  LIN37 MUTATED LIN37 WILD-TYPE 
              3             164 
  LIN37 MUTATED LIN37 WILD-TYPE 
              0              70 
$`LIN37 MUTATED`
TCGA-18-5592 TCGA-37-3789 TCGA-43-6647 
        3.02         0.43         6.02 

$`LIN37 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         3.95         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         7.00         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  LIN37 MUTATED LIN37 WILD-TYPE 
           0.43            0.10 
  LIN37 MUTATED LIN37 WILD-TYPE 
           6.02          173.79 
  LIN37 MUTATED LIN37 WILD-TYPE 
           3.02           18.46 
[1] "0.4 - 6.0 (3.0)"    "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
  "LIN37 MUTATED" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
[1] "hr="     "1200000"
D98V2, continuous
D98V3, binary
                 cls
clus                0   1
  LIN37 MUTATED     1   2
  LIN37 WILD-TYPE  46 129
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIN37 MUTATED      1    2
  LIN37 WILD-TYPE   46  129
        clus
vv       LIN37 MUTATED LIN37 WILD-TYPE
  FEMALE             1              46
  MALE               2             129
D98V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  LIN37 MUTATED                                       0
  LIN37 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  LIN37 MUTATED                                        0
  LIN37 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  LIN37 MUTATED                                                             3
  LIN37 WILD-TYPE                                                         169
D98V5, multiclass
                                                             clus
vv                                                            LIN37 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             3
                                                             clus
vv                                                            LIN37 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             169
                 vv
clus               T1  T2  T3  T4
  LIN37 MUTATED     0   2   1   0
  LIN37 WILD-TYPE  36 114  13  12
D98V6, multiclass
    clus
vv   LIN37 MUTATED LIN37 WILD-TYPE
  T1             0              36
  T2             2             114
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  LIN37 MUTATED     2   1   0   0
  LIN37 WILD-TYPE 115  38  17   5
D98V7, multiclass
    clus
vv   LIN37 MUTATED LIN37 WILD-TYPE
  N0             2             115
  N1             1              38
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  LIN37 MUTATED     1   0   1
  LIN37 WILD-TYPE 164   3   5
D98V8, multiclass
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              2             172 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-5595      TCGA-21-1070      TCGA-21-1071      TCGA-21-1076 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1077      TCGA-21-1078      TCGA-21-1081      TCGA-21-5782 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5784      TCGA-21-5786      TCGA-21-5787      TCGA-22-0944 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1002      TCGA-22-1011      TCGA-22-1012      TCGA-22-1016 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4591      TCGA-22-4593      TCGA-22-4599      TCGA-22-4601 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4607      TCGA-22-4613      TCGA-22-5471 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4538      TCGA-33-4547      TCGA-33-4566 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4582      TCGA-33-4583      TCGA-33-4586      TCGA-33-6737 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2600      TCGA-34-2608      TCGA-34-5231 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5232      TCGA-34-5234      TCGA-34-5236      TCGA-34-5239 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5240      TCGA-34-5241      TCGA-34-5927      TCGA-34-5928 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5929      TCGA-37-3783      TCGA-37-4133      TCGA-37-4135 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-4141      TCGA-37-5819      TCGA-39-5016      TCGA-39-5019 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5021      TCGA-39-5022      TCGA-39-5024      TCGA-39-5027 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5037      TCGA-39-5039 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-2578      TCGA-43-3394      TCGA-43-3920      TCGA-43-5668 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6143      TCGA-43-6770      TCGA-43-6771      TCGA-46-3765 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-3766      TCGA-46-3767      TCGA-46-3768      TCGA-46-3769 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4081      TCGA-56-1622 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-5897      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2707      TCGA-60-2708      TCGA-60-2709 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2713 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2715      TCGA-60-2719      TCGA-60-2720      TCGA-60-2721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2722      TCGA-60-2723      TCGA-60-2724      TCGA-60-2725 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2726      TCGA-63-5128      TCGA-63-5131      TCGA-63-6202 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2768      TCGA-66-2770 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2786      TCGA-66-2787      TCGA-66-2788 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2789      TCGA-66-2791      TCGA-66-2792      TCGA-66-2793 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800      TCGA-70-6722 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-70-6723      TCGA-85-6175      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
                 vv
clus               I II III+IV
  LIN37 MUTATED    1  2      0
  LIN37 WILD-TYPE 96 36     41
D98V9, multiclass
        clus
vv       LIN37 MUTATED LIN37 WILD-TYPE
  I                  1              96
  II                 2              36
  III+IV             0              41
D98V10, binary
                 cls
clus                0   1
  LIN37 MUTATED     0   3
  LIN37 WILD-TYPE   4 171
[1] "tbl2"
                 cls
clus              [,1] [,2]
  LIN37 MUTATED      0    3
  LIN37 WILD-TYPE    4  171
     clus
vv    LIN37 MUTATED LIN37 WILD-TYPE
  NO              0               4
  YES             3             171
D98V11, continuous
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              2             144 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3411      TCGA-18-3412      TCGA-18-3414      TCGA-18-3415 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3416      TCGA-18-3417      TCGA-18-3419      TCGA-18-3421 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-4083      TCGA-18-4086      TCGA-21-1070      TCGA-21-1071 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4593      TCGA-22-4595      TCGA-22-4599 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4601      TCGA-22-4604      TCGA-22-4607      TCGA-22-4613 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5471      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-33-4532 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4538      TCGA-33-4547      TCGA-33-4566 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4582      TCGA-33-4583      TCGA-33-4586      TCGA-33-6737 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2600      TCGA-34-2608      TCGA-34-5231 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5240      TCGA-34-5241      TCGA-34-5928      TCGA-34-5929 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-39-5016 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5019      TCGA-39-5021      TCGA-39-5022      TCGA-39-5024 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5027      TCGA-39-5028      TCGA-39-5029      TCGA-39-5030 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5031      TCGA-39-5035      TCGA-39-5036      TCGA-39-5037 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5039      TCGA-43-2578      TCGA-43-3394      TCGA-43-3920 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-5668      TCGA-43-6143      TCGA-43-6770      TCGA-43-6771 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-51-4079      TCGA-51-4081      TCGA-56-1622      TCGA-60-2707 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2708      TCGA-60-2709      TCGA-60-2710      TCGA-60-2711 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2713      TCGA-60-2715      TCGA-60-2719 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-5131 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2757 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2785 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
D98V12, continuous
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              1             126 
     TCGA-18-3407      TCGA-18-3408      TCGA-18-3409      TCGA-18-3412 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3414      TCGA-18-3415      TCGA-18-3417      TCGA-18-3419 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4086      TCGA-18-4721      TCGA-21-1070 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-1002      TCGA-22-1012 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4593      TCGA-22-4607      TCGA-22-4613 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5471      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5489 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4583 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4586      TCGA-34-2596      TCGA-34-2600      TCGA-34-2608 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-34-5234      TCGA-34-5241      TCGA-34-5928      TCGA-34-5929 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-39-5016 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5021      TCGA-39-5022      TCGA-39-5024      TCGA-39-5027 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5028      TCGA-39-5029      TCGA-39-5030      TCGA-39-5031 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5035      TCGA-39-5036      TCGA-39-5039      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3920      TCGA-43-5668      TCGA-43-6143      TCGA-43-6771 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-1622      TCGA-56-5897      TCGA-56-6545      TCGA-56-6546 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2707      TCGA-60-2708      TCGA-60-2710 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2715      TCGA-60-2719 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2720      TCGA-60-2721      TCGA-60-2722      TCGA-60-2723 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-5128 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-63-5131      TCGA-63-6202      TCGA-66-2727      TCGA-66-2734 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2770      TCGA-66-2771      TCGA-66-2773      TCGA-66-2777 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2778      TCGA-66-2780      TCGA-66-2781      TCGA-66-2782 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2783      TCGA-66-2785      TCGA-66-2786      TCGA-66-2787 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2788      TCGA-66-2789      TCGA-66-2791      TCGA-66-2792 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2793      TCGA-66-2794      TCGA-66-2795      TCGA-66-2800 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  LIN37 MUTATED                                             1
  LIN37 WILD-TYPE                                          93
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  LIN37 MUTATED                                        1              0
  LIN37 WILD-TYPE                                     42             28
                 vv
clus              LIFELONG NON-SMOKER
  LIN37 MUTATED                     1
  LIN37 WILD-TYPE                   7
D98V13, multiclass
                                             clus
vv                                            LIN37 MUTATED LIN37 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     1               7
D98V14, continuous
[1] "Remove cluster labels:" "LIN37 MUTATED"         
clus
  LIN37 MUTATED LIN37 WILD-TYPE 
              1             104 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5782 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-21-5786      TCGA-21-5787      TCGA-22-0944      TCGA-22-1002 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-1011      TCGA-22-1012      TCGA-22-1016      TCGA-22-4591 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-4613      TCGA-22-5472 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5473      TCGA-22-5474      TCGA-22-5480      TCGA-22-5482 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4533      TCGA-33-4547      TCGA-33-4582 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-33-4583      TCGA-33-4586      TCGA-34-5240      TCGA-34-5241 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-39-5021 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-6143      TCGA-43-6770 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-43-6771      TCGA-56-1622      TCGA-56-5898      TCGA-56-6545 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2707      TCGA-60-2708      TCGA-60-2709 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2713 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2715      TCGA-60-2719      TCGA-60-2720      TCGA-60-2721 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-60-2723      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" "LIN37 WILD-TYPE" 

Clustering(99) Variable = OR4C11 MUTATION ANALYSIS
D99V1, survival
                  sevent
clus2               0  1
  OR4C11 MUTATED    4  3
  OR4C11 WILD-TYPE 93 67
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               7              160 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               3               67 
$`OR4C11 MUTATED`
TCGA-21-1081 TCGA-22-4599 TCGA-22-5474 TCGA-39-5016 TCGA-39-5037 TCGA-66-2763 
        9.30        38.17        14.60        74.07         0.79         0.99 
TCGA-66-2777 
        2.01 

$`OR4C11 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 
      115.59        46.88        60.89        34.78        15.55        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        2.01        23.01        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR4C11 MUTATED OR4C11 WILD-TYPE 
            0.79             0.10 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
           74.07           173.79 
  OR4C11 MUTATED OR4C11 WILD-TYPE 
            9.30            18.46 
[1] "0.8 - 74.1 (9.3)"   "0.1 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE"   "OR4C11 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR4C11 WILD-TYPE"   "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR4C11 MUTATED" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
[1] "hr=" "1.2"
D99V2, continuous
D99V3, binary
                  cls
clus                 0   1
  OR4C11 MUTATED     2   5
  OR4C11 WILD-TYPE  45 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C11 MUTATED      2    5
  OR4C11 WILD-TYPE   45  126
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  FEMALE              2               45
  MALE                5              126
D99V4, continuous
[1] "Remove cluster labels:" "OR4C11 MUTATED"        
clus
  OR4C11 MUTATED OR4C11 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5477 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5478       TCGA-22-5480       TCGA-22-5482       TCGA-22-5485 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-22-5489       TCGA-22-5491       TCGA-22-5492       TCGA-34-5234 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-60-2698 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-60-2712       TCGA-60-2715       TCGA-60-2725       TCGA-60-2726 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
      TCGA-70-6722       TCGA-70-6723 
"OR4C11 WILD-TYPE" "OR4C11 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR4C11 MUTATED                                       1
  OR4C11 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR4C11 MUTATED                                        0
  OR4C11 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR4C11 MUTATED                                                             6
  OR4C11 WILD-TYPE                                                         166
D99V5, multiclass
                                                             clus
vv                                                            OR4C11 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            OR4C11 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
                  vv
clus                T1  T2  T3  T4
  OR4C11 MUTATED     1   6   0   0
  OR4C11 WILD-TYPE  35 110  14  12
D99V6, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  T1              1               35
  T2              6              110
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR4C11 MUTATED     4   3   0   0
  OR4C11 WILD-TYPE 113  36  17   5
D99V7, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  N0              4              113
  N1              3               36
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  OR4C11 MUTATED     7   0   0
  OR4C11 WILD-TYPE 158   3   6
D99V8, multiclass
    clus
vv   OR4C11 MUTATED OR4C11 WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR4C11 MUTATED    4  3      0
  OR4C11 WILD-TYPE 93 35     41
D99V9, multiclass
        clus
vv       OR4C11 MUTATED OR4C11 WILD-TYPE
  I                   4               93
  II                  3               35
  III+IV              0               41
D99V10, binary
                  cls
clus                 0   1
  OR4C11 MUTATED     0   7
  OR4C11 WILD-TYPE   4 167
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR4C11 MUTATED      0    7
  OR4C11 WILD-TYPE    4  167
     clus
vv    OR4C11 MUTATED OR4C11 WILD-TYPE
  NO               0                4
  YES              7              167
D99V11, continuous
D99V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR4C11 MUTATED                                             5
  OR4C11 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR4C11 MUTATED                                        0              2
  OR4C11 WILD-TYPE                                     43             26
                  vv
clus               LIFELONG NON-SMOKER
  OR4C11 MUTATED                     0
  OR4C11 WILD-TYPE                   8
D99V13, multiclass
                                             clus
vv                                            OR4C11 MUTATED OR4C11 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D99V14, continuous

Clustering(100) Variable = OR8K5 MUTATION ANALYSIS
D100V1, survival
                 sevent
clus2              0  1
  OR8K5 MUTATED    5  1
  OR8K5 WILD-TYPE 92 69
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              6             161 
  OR8K5 MUTATED OR8K5 WILD-TYPE 
              1              69 
$`OR8K5 MUTATED`
TCGA-18-3417 TCGA-33-4583 TCGA-34-5927 TCGA-37-3783 TCGA-56-1622 TCGA-66-2787 
       24.92       141.34        22.95         3.95        28.93        40.01 

$`OR8K5 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       173.79       103.53        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82         7.73        14.07         5.52         4.96 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         0.39         2.07         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       25.97        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  OR8K5 MUTATED OR8K5 WILD-TYPE 
           3.95            0.10 
  OR8K5 MUTATED OR8K5 WILD-TYPE 
         141.34          173.79 
  OR8K5 MUTATED OR8K5 WILD-TYPE 
         26.925          16.600 
[1] "4.0 - 141.3 (26.9)" "0.1 - 173.8 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE"   "OR8K5 MUTATED" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K5 WILD-TYPE"   "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR8K5 MUTATED" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" "OR8K5 WILD-TYPE" 
[1] "hr=" "3.8"
D100V2, continuous
D100V3, binary
                 cls
clus                0   1
  OR8K5 MUTATED     1   5
  OR8K5 WILD-TYPE  46 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K5 MUTATED      1    5
  OR8K5 WILD-TYPE   46  126
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  FEMALE             1              46
  MALE               5             126
D100V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR8K5 MUTATED                                       0
  OR8K5 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR8K5 MUTATED                                        0
  OR8K5 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR8K5 MUTATED                                                             6
  OR8K5 WILD-TYPE                                                         166
D100V5, multiclass
                                                             clus
vv                                                            OR8K5 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            OR8K5 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  OR8K5 MUTATED     3   2   1   0
  OR8K5 WILD-TYPE  33 114  13  12
D100V6, multiclass
    clus
vv   OR8K5 MUTATED OR8K5 WILD-TYPE
  T1             3              33
  T2             2             114
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR8K5 MUTATED     4   1   1   0
  OR8K5 WILD-TYPE 113  38  16   5
D100V7, multiclass
    clus
vv   OR8K5 MUTATED OR8K5 WILD-TYPE
  N0             4             113
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR8K5 MUTATED     5   1   0
  OR8K5 WILD-TYPE 160   2   6
D100V8, multiclass
    clus
vv   OR8K5 MUTATED OR8K5 WILD-TYPE
  M0             5             160
  M1             1               2
  MX             0               6
                 vv
clus               I II III+IV
  OR8K5 MUTATED    4  0      2
  OR8K5 WILD-TYPE 93 38     39
D100V9, multiclass
        clus
vv       OR8K5 MUTATED OR8K5 WILD-TYPE
  I                  4              93
  II                 0              38
  III+IV             2              39
D100V10, binary
                 cls
clus                0   1
  OR8K5 MUTATED     0   6
  OR8K5 WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K5 MUTATED      0    6
  OR8K5 WILD-TYPE    4  168
     clus
vv    OR8K5 MUTATED OR8K5 WILD-TYPE
  NO              0               4
  YES             6             168
D100V11, continuous
D100V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR8K5 MUTATED                                             3
  OR8K5 WILD-TYPE                                          91
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR8K5 MUTATED                                        1              0
  OR8K5 WILD-TYPE                                     42             28
                 vv
clus              LIFELONG NON-SMOKER
  OR8K5 MUTATED                     0
  OR8K5 WILD-TYPE                   8
D100V13, multiclass
                                             clus
vv                                            OR8K5 MUTATED OR8K5 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             3              91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          0              28
  LIFELONG NON-SMOKER                                     0               8
D100V14, continuous

Clustering(101) Variable = GABRG3 MUTATION ANALYSIS
D101V1, survival
                  sevent
clus2               0  1
  GABRG3 MUTATED    5  4
  GABRG3 WILD-TYPE 92 66
  GABRG3 MUTATED GABRG3 WILD-TYPE 
               9              158 
  GABRG3 MUTATED GABRG3 WILD-TYPE 
               4               66 
$`GABRG3 MUTATED`
TCGA-18-4721 TCGA-22-4599 TCGA-33-4566 TCGA-33-6737 TCGA-51-4079 TCGA-56-6546 
       90.51        38.17       173.79        19.76         0.39         1.02 
TCGA-60-2724 TCGA-66-2734 TCGA-85-6561 
        1.22        43.10         0.79 

$`GABRG3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 
       43.10       103.53       141.34        14.07         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-60-2698 
        0.39         2.07        28.93         0.10         2.04        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 TCGA-66-2744 
       22.78        23.64        11.77        16.96        21.07         0.99 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 
       49.05         0.36 

  GABRG3 MUTATED GABRG3 WILD-TYPE 
            0.39             0.10 
  GABRG3 MUTATED GABRG3 WILD-TYPE 
          173.79           141.34 
  GABRG3 MUTATED GABRG3 WILD-TYPE 
           19.76            17.42 
[1] "0.4 - 173.8 (19.8)" "0.1 - 141.3 (17.4)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" "GABRG3 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
  "GABRG3 MUTATED" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE"   "GABRG3 MUTATED" 
[1] "hr=" "1.6"
D101V2, continuous
D101V3, binary
                  cls
clus                 0   1
  GABRG3 MUTATED     3   7
  GABRG3 WILD-TYPE  44 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG3 MUTATED      3    7
  GABRG3 WILD-TYPE   44  124
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  FEMALE              3               44
  MALE                7              124
D101V4, continuous
[1] "Remove cluster labels:" "GABRG3 MUTATED"        
clus
  GABRG3 MUTATED GABRG3 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4601       TCGA-22-4604 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" "GABRG3 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  GABRG3 MUTATED                                       0
  GABRG3 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  GABRG3 MUTATED                                        0
  GABRG3 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GABRG3 MUTATED                                                            10
  GABRG3 WILD-TYPE                                                         162
D101V5, multiclass
                                                             clus
vv                                                            GABRG3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             10
                                                             clus
vv                                                            GABRG3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              162
                  vv
clus                T1  T2  T3  T4
  GABRG3 MUTATED     1   8   1   0
  GABRG3 WILD-TYPE  35 108  13  12
D101V6, multiclass
    clus
vv   GABRG3 MUTATED GABRG3 WILD-TYPE
  T1              1               35
  T2              8              108
  T3              1               13
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  GABRG3 MUTATED     8   1   1   0
  GABRG3 WILD-TYPE 109  38  16   5
D101V7, multiclass
    clus
vv   GABRG3 MUTATED GABRG3 WILD-TYPE
  N0              8              109
  N1              1               38
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  GABRG3 MUTATED     8   0   1
  GABRG3 WILD-TYPE 157   3   5
D101V8, multiclass
    clus
vv   GABRG3 MUTATED GABRG3 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  GABRG3 MUTATED    5  2      2
  GABRG3 WILD-TYPE 92 36     39
D101V9, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  I                   5               92
  II                  2               36
  III+IV              2               39
D101V10, binary
                  cls
clus                 0   1
  GABRG3 MUTATED     0  10
  GABRG3 WILD-TYPE   4 164
[1] "tbl2"
                  cls
clus               [,1] [,2]
  GABRG3 MUTATED      0   10
  GABRG3 WILD-TYPE    4  164
     clus
vv    GABRG3 MUTATED GABRG3 WILD-TYPE
  NO               0                4
  YES             10              164
D101V11, continuous
D101V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GABRG3 MUTATED                                             8
  GABRG3 WILD-TYPE                                          86
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GABRG3 MUTATED                                        0              2
  GABRG3 WILD-TYPE                                     43             26
                  vv
clus               LIFELONG NON-SMOKER
  GABRG3 MUTATED                     0
  GABRG3 WILD-TYPE                   8
D101V13, multiclass
                                             clus
vv                                            GABRG3 MUTATED GABRG3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              8               86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   0               43
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D101V14, continuous

Clustering(102) Variable = KRTAP10-7 MUTATION ANALYSIS
D102V1, survival
                     sevent
clus2                  0  1
  KRTAP10-7 MUTATED    3  3
  KRTAP10-7 WILD-TYPE 94 67
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  6                 161 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  3                  67 
$`KRTAP10-7 MUTATED`
TCGA-18-4083 TCGA-18-4086 TCGA-34-5232 TCGA-39-5028 TCGA-66-2767 TCGA-66-2785 
        6.15         2.79        51.78         1.71         2.01         1.94 

$`KRTAP10-7 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
       43.76        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        32.84        50.24        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
               1.71                0.10 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
              51.78              173.79 
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
               2.40               18.84 
[1] "1.7 - 51.8 (2.4)"   "0.1 - 173.8 (18.8)"
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED"   "KRTAP10-7 MUTATED" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED"   "KRTAP10-7 MUTATED" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3406          TCGA-18-3407          TCGA-18-3408 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3409          TCGA-18-3410          TCGA-18-3411 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3412          TCGA-18-3414          TCGA-18-3415 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3416          TCGA-18-3417          TCGA-18-3419 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-18-3421          TCGA-18-4083          TCGA-18-4086 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED"   "KRTAP10-7 MUTATED" 
         TCGA-18-4721          TCGA-18-5592          TCGA-18-5595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1070          TCGA-21-1071          TCGA-21-1076 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-1077          TCGA-21-1078          TCGA-21-1081 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5784          TCGA-21-5786 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5787          TCGA-22-0944          TCGA-22-1002 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1011          TCGA-22-1012          TCGA-22-1016 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4591          TCGA-22-4593          TCGA-22-4595 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4599          TCGA-22-4601          TCGA-22-4604 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4607          TCGA-22-4613          TCGA-22-5471 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5477          TCGA-22-5478          TCGA-22-5480 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5482          TCGA-22-5485          TCGA-22-5489 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5491          TCGA-22-5492          TCGA-33-4532 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4538          TCGA-33-4547 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4566          TCGA-33-4582          TCGA-33-4583 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4586          TCGA-33-6737          TCGA-34-2596 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-2600          TCGA-34-2608          TCGA-34-5231 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5232          TCGA-34-5234          TCGA-34-5236 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5239          TCGA-34-5240          TCGA-34-5241 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5927          TCGA-34-5928          TCGA-34-5929 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-3783          TCGA-37-3789          TCGA-37-4133 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-4135          TCGA-37-4141          TCGA-37-5819 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5016          TCGA-39-5019          TCGA-39-5021 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5022          TCGA-39-5024          TCGA-39-5027 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5028          TCGA-39-5029          TCGA-39-5030 
  "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5031          TCGA-39-5035          TCGA-39-5036 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5037          TCGA-39-5039          TCGA-43-2578 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-3394          TCGA-43-3920          TCGA-43-5668 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-46-3768          TCGA-46-6025 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-46-6026          TCGA-51-4079          TCGA-51-4080 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-51-4081          TCGA-56-1622          TCGA-56-5897 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2698 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2707          TCGA-60-2708          TCGA-60-2709 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2710          TCGA-60-2711          TCGA-60-2712 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2713          TCGA-60-2715          TCGA-60-2719 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2720          TCGA-60-2721          TCGA-60-2722 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2723          TCGA-60-2724          TCGA-60-2725 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2726          TCGA-66-2727          TCGA-66-2734 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2742          TCGA-66-2744          TCGA-66-2754 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2755          TCGA-66-2756          TCGA-66-2757 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2758          TCGA-66-2759          TCGA-66-2763 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2765          TCGA-66-2766          TCGA-66-2767 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" 
         TCGA-66-2768          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2785          TCGA-66-2786 
"KRTAP10-7 WILD-TYPE"   "KRTAP10-7 MUTATED" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2787          TCGA-66-2788          TCGA-66-2789 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2791          TCGA-66-2792          TCGA-66-2793 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2794          TCGA-66-2795          TCGA-66-2800 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6560          TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
[1] "hr=" "3.1"
D102V2, continuous
D102V3, binary
                     cls
clus                    0   1
  KRTAP10-7 MUTATED     1   6
  KRTAP10-7 WILD-TYPE  46 125
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP10-7 MUTATED      1    6
  KRTAP10-7 WILD-TYPE   46  125
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  FEMALE                 1                  46
  MALE                   6                 125
D102V4, continuous
                     vv
clus                  LUNG BASALOID SQUAMOUS CELL CARCINOMA
  KRTAP10-7 MUTATED                                       0
  KRTAP10-7 WILD-TYPE                                     5
                     vv
clus                  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  KRTAP10-7 MUTATED                                        0
  KRTAP10-7 WILD-TYPE                                      1
                     vv
clus                  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  KRTAP10-7 MUTATED                                                             7
  KRTAP10-7 WILD-TYPE                                                         165
D102V5, multiclass
                                                             clus
vv                                                            KRTAP10-7 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 7
                                                             clus
vv                                                            KRTAP10-7 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                         5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                        1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                 165
                     vv
clus                   T1  T2  T3  T4
  KRTAP10-7 MUTATED     2   4   0   1
  KRTAP10-7 WILD-TYPE  34 112  14  11
D102V6, multiclass
    clus
vv   KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  T1                 2                  34
  T2                 4                 112
  T3                 0                  14
  T4                 1                  11
                     vv
clus                   N0  N1  N2  N3
  KRTAP10-7 MUTATED     3   3   0   1
  KRTAP10-7 WILD-TYPE 114  36  17   4
D102V7, multiclass
    clus
vv   KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  N0                 3                 114
  N1                 3                  36
  N2                 0                  17
  N3                 1                   4
                     vv
clus                   M0  M1  MX
  KRTAP10-7 MUTATED     7   0   0
  KRTAP10-7 WILD-TYPE 158   3   6
D102V8, multiclass
    clus
vv   KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  M0                 7                 158
  M1                 0                   3
  MX                 0                   6
                     vv
clus                   I II III+IV
  KRTAP10-7 MUTATED    3  2      2
  KRTAP10-7 WILD-TYPE 94 36     39
D102V9, multiclass
        clus
vv       KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  I                      3                  94
  II                     2                  36
  III+IV                 2                  39
D102V10, binary
                     cls
clus                    0   1
  KRTAP10-7 MUTATED     0   7
  KRTAP10-7 WILD-TYPE   4 167
[1] "tbl2"
                     cls
clus                  [,1] [,2]
  KRTAP10-7 MUTATED      0    7
  KRTAP10-7 WILD-TYPE    4  167
     clus
vv    KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE
  NO                  0                   4
  YES                 7                 167
D102V11, continuous
D102V12, continuous
                     vv
clus                  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  KRTAP10-7 MUTATED                                             3
  KRTAP10-7 WILD-TYPE                                          91
                     vv
clus                  CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  KRTAP10-7 MUTATED                                        2              1
  KRTAP10-7 WILD-TYPE                                     41             27
                     vv
clus                  LIFELONG NON-SMOKER
  KRTAP10-7 MUTATED                     0
  KRTAP10-7 WILD-TYPE                   8
D102V13, multiclass
                                             clus
vv                                            KRTAP10-7 MUTATED
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                 3
  CURRENT REFORMED SMOKER FOR > 15 YEARS                      2
  CURRENT SMOKER                                              1
  LIFELONG NON-SMOKER                                         0
                                             clus
vv                                            KRTAP10-7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS                  91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                       41
  CURRENT SMOKER                                               27
  LIFELONG NON-SMOKER                                           8
D102V14, continuous
[1] "Remove cluster labels:" "KRTAP10-7 MUTATED"     
clus
  KRTAP10-7 MUTATED KRTAP10-7 WILD-TYPE 
                  2                 103 
         TCGA-18-3406          TCGA-18-3417          TCGA-21-1078 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-21-5782          TCGA-21-5786          TCGA-21-5787 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-0944          TCGA-22-1002          TCGA-22-1011 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-1012          TCGA-22-1016          TCGA-22-4591 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-4593          TCGA-22-4607          TCGA-22-4613 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5472          TCGA-22-5473          TCGA-22-5474 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-22-5480          TCGA-22-5482          TCGA-22-5492 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4533          TCGA-33-4547          TCGA-33-4582 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-33-4583          TCGA-33-4586          TCGA-34-5240 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-34-5241          TCGA-37-4133          TCGA-37-4135 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-37-5819          TCGA-39-5021          TCGA-39-5022 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5024          TCGA-39-5027          TCGA-39-5029 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5030          TCGA-39-5031          TCGA-39-5035 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-39-5036          TCGA-39-5037          TCGA-39-5039 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-2578          TCGA-43-3394          TCGA-43-3920 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6143          TCGA-43-6647          TCGA-43-6770 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-43-6771          TCGA-56-1622          TCGA-56-5898 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-56-6545          TCGA-56-6546          TCGA-60-2707 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2708          TCGA-60-2709          TCGA-60-2710 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2711          TCGA-60-2712          TCGA-60-2713 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2715          TCGA-60-2719          TCGA-60-2720 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2721          TCGA-60-2723          TCGA-60-2724 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-60-2725          TCGA-60-2726          TCGA-63-6202 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2727          TCGA-66-2734          TCGA-66-2742 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2744          TCGA-66-2754          TCGA-66-2755 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2756          TCGA-66-2757          TCGA-66-2758 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2759          TCGA-66-2763          TCGA-66-2765 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2766          TCGA-66-2770          TCGA-66-2771 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2773          TCGA-66-2777          TCGA-66-2778 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2780          TCGA-66-2781          TCGA-66-2782 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2783          TCGA-66-2786          TCGA-66-2787 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2788          TCGA-66-2789          TCGA-66-2791 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2792          TCGA-66-2793          TCGA-66-2794 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-66-2795          TCGA-66-2800          TCGA-85-6560 
"KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" "KRTAP10-7 WILD-TYPE" 
         TCGA-85-6561 
"KRTAP10-7 WILD-TYPE" 

Clustering(103) Variable = UGT3A2 MUTATION ANALYSIS
D103V1, survival
                  sevent
clus2               0  1
  UGT3A2 MUTATED    6  3
  UGT3A2 WILD-TYPE 91 67
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
               9              158 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
               3               67 
$`UGT3A2 MUTATED`
TCGA-18-3411 TCGA-18-3421 TCGA-21-1081 TCGA-22-4613 TCGA-34-5240 TCGA-56-5897 
       46.52        43.76         9.30        11.77         7.73         0.10 
TCGA-66-2785 TCGA-66-2789 TCGA-66-2792 
        1.94         4.04        30.02 

$`UGT3A2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       13.02        59.51        28.34        24.92         1.61         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        34.78        15.55        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       19.30        31.69        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        0.39         2.07        28.93         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
            0.10             0.36 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
           46.52           173.79 
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
            9.30            18.46 
[1] "0.1 - 46.5 (9.3)"   "0.4 - 173.8 (18.5)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE"   "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
  "UGT3A2 MUTATED" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
[1] "hr=" "1.2"
D103V2, continuous
D103V3, binary
                  cls
clus                 0   1
  UGT3A2 MUTATED     3   7
  UGT3A2 WILD-TYPE  44 124
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT3A2 MUTATED      3    7
  UGT3A2 WILD-TYPE   44  124
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  FEMALE              3               44
  MALE                7              124
D103V4, continuous
[1] "Remove cluster labels:" "UGT3A2 MUTATED"        
clus
  UGT3A2 MUTATED UGT3A2 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" "UGT3A2 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  UGT3A2 MUTATED                                       1
  UGT3A2 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  UGT3A2 MUTATED                                        0
  UGT3A2 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  UGT3A2 MUTATED                                                             9
  UGT3A2 WILD-TYPE                                                         163
D103V5, multiclass
                                                             clus
vv                                                            UGT3A2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            UGT3A2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
                  vv
clus                T1  T2  T3  T4
  UGT3A2 MUTATED     3   7   0   0
  UGT3A2 WILD-TYPE  33 109  14  12
D103V6, multiclass
    clus
vv   UGT3A2 MUTATED UGT3A2 WILD-TYPE
  T1              3               33
  T2              7              109
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  UGT3A2 MUTATED     4   4   1   1
  UGT3A2 WILD-TYPE 113  35  16   4
D103V7, multiclass
    clus
vv   UGT3A2 MUTATED UGT3A2 WILD-TYPE
  N0              4              113
  N1              4               35
  N2              1               16
  N3              1                4
                  vv
clus                M0  M1  MX
  UGT3A2 MUTATED     9   0   1
  UGT3A2 WILD-TYPE 156   3   5
D103V8, multiclass
    clus
vv   UGT3A2 MUTATED UGT3A2 WILD-TYPE
  M0              9              156
  M1              0                3
  MX              1                5
                  vv
clus                I II III+IV
  UGT3A2 MUTATED    4  4      2
  UGT3A2 WILD-TYPE 93 34     39
D103V9, multiclass
        clus
vv       UGT3A2 MUTATED UGT3A2 WILD-TYPE
  I                   4               93
  II                  4               34
  III+IV              2               39
D103V10, binary
                  cls
clus                 0   1
  UGT3A2 MUTATED     0  10
  UGT3A2 WILD-TYPE   4 164
[1] "tbl2"
                  cls
clus               [,1] [,2]
  UGT3A2 MUTATED      0   10
  UGT3A2 WILD-TYPE    4  164
     clus
vv    UGT3A2 MUTATED UGT3A2 WILD-TYPE
  NO               0                4
  YES             10              164
D103V11, continuous
D103V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  UGT3A2 MUTATED                                             6
  UGT3A2 WILD-TYPE                                          88
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  UGT3A2 MUTATED                                        2              2
  UGT3A2 WILD-TYPE                                     41             26
                  vv
clus               LIFELONG NON-SMOKER
  UGT3A2 MUTATED                     0
  UGT3A2 WILD-TYPE                   8
D103V13, multiclass
                                             clus
vv                                            UGT3A2 MUTATED UGT3A2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              6               88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D103V14, continuous

Clustering(104) Variable = PRB2 MUTATION ANALYSIS
D104V1, survival
                sevent
clus2             0  1
  PRB2 MUTATED    5  2
  PRB2 WILD-TYPE 92 68
  PRB2 MUTATED PRB2 WILD-TYPE 
             7            160 
  PRB2 MUTATED PRB2 WILD-TYPE 
             2             68 
$`PRB2 MUTATED`
TCGA-18-3414 TCGA-18-4721 TCGA-37-4141 TCGA-39-5022 TCGA-60-2711 TCGA-66-2787 
       13.02        90.51         0.39        55.17        29.19        40.01 
TCGA-66-2788 
       22.98 

$`PRB2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        4.96         3.95         0.43         7.82         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        68.58        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       25.97         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  PRB2 MUTATED PRB2 WILD-TYPE 
          0.39           0.10 
  PRB2 MUTATED PRB2 WILD-TYPE 
         90.51         173.79 
  PRB2 MUTATED PRB2 WILD-TYPE 
         29.19          16.78 
[1] "0.4 - 90.5 (29.2)"  "0.1 - 173.8 (16.8)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
  "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE"   "PRB2 MUTATED" "PRB2 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
  "PRB2 MUTATED"   "PRB2 MUTATED" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
[1] "hr=" "2"  
D104V2, continuous
D104V3, binary
                cls
clus               0   1
  PRB2 MUTATED     2   5
  PRB2 WILD-TYPE  45 126
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      2    5
  PRB2 WILD-TYPE   45  126
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  FEMALE            2             45
  MALE              5            126
D104V4, continuous
[1] "Remove cluster labels:" "PRB2 MUTATED"          
clus
  PRB2 MUTATED PRB2 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3419 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5787     TCGA-22-4591     TCGA-22-4593 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4595     TCGA-22-4599     TCGA-22-4601     TCGA-22-4604 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"PRB2 WILD-TYPE" "PRB2 WILD-TYPE" "PRB2 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PRB2 MUTATED                                       0
  PRB2 WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PRB2 MUTATED                                        0
  PRB2 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PRB2 MUTATED                                                             7
  PRB2 WILD-TYPE                                                         165
D104V5, multiclass
                                                             clus
vv                                                            PRB2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            PRB2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
                vv
clus              T1  T2  T3  T4
  PRB2 MUTATED     3   3   0   1
  PRB2 WILD-TYPE  33 113  14  11
D104V6, multiclass
    clus
vv   PRB2 MUTATED PRB2 WILD-TYPE
  T1            3             33
  T2            3            113
  T3            0             14
  T4            1             11
                vv
clus              N0  N1  N2  N3
  PRB2 MUTATED     6   1   0   0
  PRB2 WILD-TYPE 111  38  17   5
D104V7, multiclass
    clus
vv   PRB2 MUTATED PRB2 WILD-TYPE
  N0            6            111
  N1            1             38
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  PRB2 MUTATED     6   1   0
  PRB2 WILD-TYPE 159   2   6
D104V8, multiclass
    clus
vv   PRB2 MUTATED PRB2 WILD-TYPE
  M0            6            159
  M1            1              2
  MX            0              6
                vv
clus              I II III+IV
  PRB2 MUTATED    6  0      1
  PRB2 WILD-TYPE 91 38     40
D104V9, multiclass
        clus
vv       PRB2 MUTATED PRB2 WILD-TYPE
  I                 6             91
  II                0             38
  III+IV            1             40
D104V10, binary
                cls
clus               0   1
  PRB2 MUTATED     0   7
  PRB2 WILD-TYPE   4 167
[1] "tbl2"
                cls
clus             [,1] [,2]
  PRB2 MUTATED      0    7
  PRB2 WILD-TYPE    4  167
     clus
vv    PRB2 MUTATED PRB2 WILD-TYPE
  NO             0              4
  YES            7            167
D104V11, continuous
D104V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PRB2 MUTATED                                             6
  PRB2 WILD-TYPE                                          88
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PRB2 MUTATED                                        0              0
  PRB2 WILD-TYPE                                     43             28
                vv
clus             LIFELONG NON-SMOKER
  PRB2 MUTATED                     1
  PRB2 WILD-TYPE                   7
D104V13, multiclass
                                             clus
vv                                            PRB2 MUTATED PRB2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            6             88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 0             43
  CURRENT SMOKER                                         0             28
  LIFELONG NON-SMOKER                                    1              7
D104V14, continuous

Clustering(105) Variable = HDAC9 MUTATION ANALYSIS
D105V1, survival
                 sevent
clus2              0  1
  HDAC9 MUTATED    8  6
  HDAC9 WILD-TYPE 89 64
  HDAC9 MUTATED HDAC9 WILD-TYPE 
             14             153 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
              6              64 
$`HDAC9 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-22-5472 TCGA-22-5478 TCGA-33-4533 TCGA-33-4566 
       79.46       115.59        64.90         0.79       114.05       173.79 
TCGA-33-6737 TCGA-34-2596 TCGA-34-5240 TCGA-43-3394 TCGA-66-2742 TCGA-66-2759 
       19.76         2.63         7.73        11.57        21.07        25.02 
TCGA-66-2791 TCGA-85-6561 
        5.03         0.79 

$`HDAC9 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        11.77        31.69        63.52        14.60 
TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       16.60        82.98        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       14.07        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
        0.79        17.88        18.08        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        20.98         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01        22.98         4.04        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
        4.01        49.05         0.36 

  HDAC9 MUTATED HDAC9 WILD-TYPE 
           0.79            0.10 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
         173.79          141.34 
  HDAC9 MUTATED HDAC9 WILD-TYPE 
         20.415          16.960 
[1] "0.8 - 173.8 (20.4)" "0.1 - 141.3 (17.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"HDAC9 WILD-TYPE"   "HDAC9 MUTATED"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" "HDAC9 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "HDAC9 MUTATED" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE"   "HDAC9 MUTATED" 
[1] "hr=" "2"  
D105V2, continuous
D105V3, binary
                 cls
clus                0   1
  HDAC9 MUTATED     3  11
  HDAC9 WILD-TYPE  44 120
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HDAC9 MUTATED      3   11
  HDAC9 WILD-TYPE   44  120
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  FEMALE             3              44
  MALE              11             120
D105V4, continuous
[1] "Remove cluster labels:" "HDAC9 MUTATED"         
clus
  HDAC9 MUTATED HDAC9 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5473      TCGA-22-5474 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"HDAC9 WILD-TYPE" "HDAC9 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HDAC9 MUTATED                                       2
  HDAC9 WILD-TYPE                                     3
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HDAC9 MUTATED                                        0
  HDAC9 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HDAC9 MUTATED                                                            12
  HDAC9 WILD-TYPE                                                         160
D105V5, multiclass
                                                             clus
vv                                                            HDAC9 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            12
                                                             clus
vv                                                            HDAC9 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             160
                 vv
clus               T1  T2  T3  T4
  HDAC9 MUTATED     1  12   1   0
  HDAC9 WILD-TYPE  35 104  13  12
D105V6, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  T1             1              35
  T2            12             104
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  HDAC9 MUTATED     8   3   2   1
  HDAC9 WILD-TYPE 109  36  15   4
D105V7, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  N0             8             109
  N1             3              36
  N2             2              15
  N3             1               4
                 vv
clus               M0  M1  MX
  HDAC9 MUTATED    13   1   0
  HDAC9 WILD-TYPE 152   2   6
D105V8, multiclass
    clus
vv   HDAC9 MUTATED HDAC9 WILD-TYPE
  M0            13             152
  M1             1               2
  MX             0               6
                 vv
clus               I II III+IV
  HDAC9 MUTATED    5  3      5
  HDAC9 WILD-TYPE 92 35     36
D105V9, multiclass
        clus
vv       HDAC9 MUTATED HDAC9 WILD-TYPE
  I                  5              92
  II                 3              35
  III+IV             5              36
D105V10, binary
                 cls
clus                0   1
  HDAC9 MUTATED     0  14
  HDAC9 WILD-TYPE   4 160
[1] "tbl2"
                 cls
clus              [,1] [,2]
  HDAC9 MUTATED      0   14
  HDAC9 WILD-TYPE    4  160
     clus
vv    HDAC9 MUTATED HDAC9 WILD-TYPE
  NO              0               4
  YES            14             160
D105V11, continuous
D105V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HDAC9 MUTATED                                             7
  HDAC9 WILD-TYPE                                          87
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HDAC9 MUTATED                                        4              3
  HDAC9 WILD-TYPE                                     39             25
                 vv
clus              LIFELONG NON-SMOKER
  HDAC9 MUTATED                     0
  HDAC9 WILD-TYPE                   8
D105V13, multiclass
                                             clus
vv                                            HDAC9 MUTATED HDAC9 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             7              87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  4              39
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     0               8
D105V14, continuous

Clustering(106) Variable = HAO1 MUTATION ANALYSIS
D106V1, survival
                sevent
clus2             0  1
  HAO1 MUTATED    6  1
  HAO1 WILD-TYPE 91 69
  HAO1 MUTATED HAO1 WILD-TYPE 
             7            160 
  HAO1 MUTATED HAO1 WILD-TYPE 
             1             69 
$`HAO1 MUTATED`
TCGA-21-1070 TCGA-22-4599 TCGA-37-3783 TCGA-43-3920 TCGA-60-2713 TCGA-66-2755 
      115.59        38.17         3.95        18.84        47.87         0.92 
TCGA-66-2785 
        1.94 

$`HAO1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 
       14.10        27.02        20.45        35.08        24.13        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       43.10       173.79       103.53       141.34        14.07        19.76 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
        2.63        61.61        32.84        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        4.96         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 
        0.79        17.88        18.08        11.57         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       29.19         9.01        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  HAO1 MUTATED HAO1 WILD-TYPE 
          0.92           0.10 
  HAO1 MUTATED HAO1 WILD-TYPE 
        115.59         173.79 
  HAO1 MUTATED HAO1 WILD-TYPE 
         18.84          17.42 
[1] "0.9 - 115.6 (18.8)" "0.1 - 173.8 (17.4)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
  "HAO1 MUTATED" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE"   "HAO1 MUTATED" "HAO1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
[1] "hr=" "3.6"
D106V2, continuous
D106V3, binary
                cls
clus               0   1
  HAO1 MUTATED     2   5
  HAO1 WILD-TYPE  45 126
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAO1 MUTATED      2    5
  HAO1 WILD-TYPE   45  126
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  FEMALE            2             45
  MALE              5            126
D106V4, continuous
[1] "Remove cluster labels:" "HAO1 MUTATED"          
clus
  HAO1 MUTATED HAO1 WILD-TYPE 
             1             35 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4601     TCGA-22-4604 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5472     TCGA-22-5473     TCGA-22-5474 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5477     TCGA-22-5478     TCGA-22-5480     TCGA-22-5482 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2698     TCGA-60-2712     TCGA-60-2715     TCGA-60-2725 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
    TCGA-60-2726     TCGA-70-6722     TCGA-70-6723 
"HAO1 WILD-TYPE" "HAO1 WILD-TYPE" "HAO1 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  HAO1 MUTATED                                       0
  HAO1 WILD-TYPE                                     5
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  HAO1 MUTATED                                        0
  HAO1 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  HAO1 MUTATED                                                             7
  HAO1 WILD-TYPE                                                         165
D106V5, multiclass
                                                             clus
vv                                                            HAO1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            7
                                                             clus
vv                                                            HAO1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            165
                vv
clus              T1  T2  T3  T4
  HAO1 MUTATED     0   5   2   0
  HAO1 WILD-TYPE  36 111  12  12
D106V6, multiclass
    clus
vv   HAO1 MUTATED HAO1 WILD-TYPE
  T1            0             36
  T2            5            111
  T3            2             12
  T4            0             12
                vv
clus              N0  N1  N2  N3
  HAO1 MUTATED     6   0   1   0
  HAO1 WILD-TYPE 111  39  16   5
D106V7, multiclass
    clus
vv   HAO1 MUTATED HAO1 WILD-TYPE
  N0            6            111
  N1            0             39
  N2            1             16
  N3            0              5
                vv
clus              M0  M1  MX
  HAO1 MUTATED     7   0   0
  HAO1 WILD-TYPE 158   3   6
D106V8, multiclass
    clus
vv   HAO1 MUTATED HAO1 WILD-TYPE
  M0            7            158
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  HAO1 MUTATED    5  0      2
  HAO1 WILD-TYPE 92 38     39
D106V9, multiclass
        clus
vv       HAO1 MUTATED HAO1 WILD-TYPE
  I                 5             92
  II                0             38
  III+IV            2             39
D106V10, binary
                cls
clus               0   1
  HAO1 MUTATED     0   7
  HAO1 WILD-TYPE   4 167
[1] "tbl2"
                cls
clus             [,1] [,2]
  HAO1 MUTATED      0    7
  HAO1 WILD-TYPE    4  167
     clus
vv    HAO1 MUTATED HAO1 WILD-TYPE
  NO             0              4
  YES            7            167
D106V11, continuous
D106V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  HAO1 MUTATED                                             3
  HAO1 WILD-TYPE                                          91
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  HAO1 MUTATED                                        1              2
  HAO1 WILD-TYPE                                     42             26
                vv
clus             LIFELONG NON-SMOKER
  HAO1 MUTATED                     0
  HAO1 WILD-TYPE                   8
D106V13, multiclass
                                             clus
vv                                            HAO1 MUTATED HAO1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            3             91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 1             42
  CURRENT SMOKER                                         2             26
  LIFELONG NON-SMOKER                                    0              8
D106V14, continuous

Clustering(107) Variable = OR2T12 MUTATION ANALYSIS
D107V1, survival
                  sevent
clus2               0  1
  OR2T12 MUTATED    5  3
  OR2T12 WILD-TYPE 92 67
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               8              159 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               3               67 
$`OR2T12 MUTATED`
TCGA-18-3409 TCGA-18-4086 TCGA-18-5592 TCGA-21-5786 TCGA-22-5473 TCGA-34-5236 
       79.46         2.79         3.02        21.57        63.52         9.04 
TCGA-60-2713 TCGA-66-2777 
       47.87         2.01 

$`OR2T12 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
        6.15        90.51        27.16       115.59        46.88        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5787 
       34.78        15.55         9.30        31.63        29.85        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        7.33         4.31         1.74        14.10        27.02        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 
       35.08        24.13        38.17        34.75        13.12        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        31.69        64.90        14.60        44.22         0.79 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       71.34        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       82.98       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 
      141.34        14.07        19.76         2.63        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       50.24        51.78        32.68        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         3.02        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2T12 MUTATED OR2T12 WILD-TYPE 
            2.01             0.10 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
           79.46           173.79 
  OR2T12 MUTATED OR2T12 WILD-TYPE 
          15.305           17.880 
[1] "2.0 - 79.5 (15.3)"  "0.1 - 173.8 (17.9)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" "OR2T12 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE"   "OR2T12 MUTATED" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
  "OR2T12 MUTATED" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
[1] "hr=" "1.2"
D107V2, continuous
D107V3, binary
                  cls
clus                 0   1
  OR2T12 MUTATED     0   8
  OR2T12 WILD-TYPE  47 123
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T12 MUTATED      0    8
  OR2T12 WILD-TYPE   47  123
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  FEMALE              0               47
  MALE                8              123
D107V4, continuous
[1] "Remove cluster labels:" "OR2T12 MUTATED"        
clus
  OR2T12 MUTATED OR2T12 WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5474 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" "OR2T12 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2T12 MUTATED                                       1
  OR2T12 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2T12 MUTATED                                        0
  OR2T12 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T12 MUTATED                                                             7
  OR2T12 WILD-TYPE                                                         165
D107V5, multiclass
                                                             clus
vv                                                            OR2T12 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              7
                                                             clus
vv                                                            OR2T12 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              165
                  vv
clus                T1  T2  T3  T4
  OR2T12 MUTATED     1   4   3   0
  OR2T12 WILD-TYPE  35 112  11  12
D107V6, multiclass
    clus
vv   OR2T12 MUTATED OR2T12 WILD-TYPE
  T1              1               35
  T2              4              112
  T3              3               11
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR2T12 MUTATED     8   0   0   0
  OR2T12 WILD-TYPE 109  39  17   5
D107V7, multiclass
    clus
vv   OR2T12 MUTATED OR2T12 WILD-TYPE
  N0              8              109
  N1              0               39
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  OR2T12 MUTATED     8   0   0
  OR2T12 WILD-TYPE 157   3   6
D107V8, multiclass
    clus
vv   OR2T12 MUTATED OR2T12 WILD-TYPE
  M0              8              157
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR2T12 MUTATED    5  2      0
  OR2T12 WILD-TYPE 92 36     41
D107V9, multiclass
        clus
vv       OR2T12 MUTATED OR2T12 WILD-TYPE
  I                   5               92
  II                  2               36
  III+IV              0               41
D107V10, binary
                  cls
clus                 0   1
  OR2T12 MUTATED     0   8
  OR2T12 WILD-TYPE   4 166
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR2T12 MUTATED      0    8
  OR2T12 WILD-TYPE    4  166
     clus
vv    OR2T12 MUTATED OR2T12 WILD-TYPE
  NO               0                4
  YES              8              166
D107V11, continuous
D107V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T12 MUTATED                                             2
  OR2T12 WILD-TYPE                                          92
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T12 MUTATED                                        3              2
  OR2T12 WILD-TYPE                                     40             26
                  vv
clus               LIFELONG NON-SMOKER
  OR2T12 MUTATED                     0
  OR2T12 WILD-TYPE                   8
D107V13, multiclass
                                             clus
vv                                            OR2T12 MUTATED OR2T12 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              2               92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   3               40
  CURRENT SMOKER                                           2               26
  LIFELONG NON-SMOKER                                      0                8
D107V14, continuous

Clustering(108) Variable = OR5AS1 MUTATION ANALYSIS
D108V1, survival
                  sevent
clus2               0  1
  OR5AS1 MUTATED    6  1
  OR5AS1 WILD-TYPE 91 69
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               7              160 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
               1               69 
$`OR5AS1 MUTATED`
TCGA-18-3409 TCGA-18-4721 TCGA-33-4566 TCGA-39-5031 TCGA-39-5036 TCGA-43-3920 
       79.46        90.51       173.79        27.35        35.64        18.84 
TCGA-66-2734 
       43.10 

$`OR5AS1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
        1.71        24.33         1.94        15.58         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       18.08        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2742 
       22.78         1.22        23.64        11.77        16.96        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
           18.84             0.10 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
          173.79           141.34 
  OR5AS1 MUTATED OR5AS1 WILD-TYPE 
          43.100           15.565 
[1] "18.8 - 173.8 (43.1)" "0.1 - 141.3 (15.6)" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
  "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE"   "OR5AS1 MUTATED" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" "OR5AS1 WILD-TYPE" 
[1] "hr="     "7.9e+07"
D108V2, continuous
D108V3, binary
                  cls
clus                 0   1
  OR5AS1 MUTATED     2   5
  OR5AS1 WILD-TYPE  45 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AS1 MUTATED      2    5
  OR5AS1 WILD-TYPE   45  126
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  FEMALE              2               45
  MALE                5              126
D108V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR5AS1 MUTATED                                       1
  OR5AS1 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR5AS1 MUTATED                                        0
  OR5AS1 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5AS1 MUTATED                                                             6
  OR5AS1 WILD-TYPE                                                         166
D108V5, multiclass
                                                             clus
vv                                                            OR5AS1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            OR5AS1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
                  vv
clus                T1  T2  T3  T4
  OR5AS1 MUTATED     3   4   0   0
  OR5AS1 WILD-TYPE  33 112  14  12
D108V6, multiclass
    clus
vv   OR5AS1 MUTATED OR5AS1 WILD-TYPE
  T1              3               33
  T2              4              112
  T3              0               14
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  OR5AS1 MUTATED     7   0   0   0
  OR5AS1 WILD-TYPE 110  39  17   5
D108V7, multiclass
    clus
vv   OR5AS1 MUTATED OR5AS1 WILD-TYPE
  N0              7              110
  N1              0               39
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  OR5AS1 MUTATED     7   0   0
  OR5AS1 WILD-TYPE 158   3   6
D108V8, multiclass
    clus
vv   OR5AS1 MUTATED OR5AS1 WILD-TYPE
  M0              7              158
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  OR5AS1 MUTATED    6  0      0
  OR5AS1 WILD-TYPE 91 38     41
D108V9, multiclass
        clus
vv       OR5AS1 MUTATED OR5AS1 WILD-TYPE
  I                   6               91
  II                  0               38
  III+IV              0               41
D108V10, binary
                  cls
clus                 0   1
  OR5AS1 MUTATED     0   7
  OR5AS1 WILD-TYPE   4 167
[1] "tbl2"
                  cls
clus               [,1] [,2]
  OR5AS1 MUTATED      0    7
  OR5AS1 WILD-TYPE    4  167
     clus
vv    OR5AS1 MUTATED OR5AS1 WILD-TYPE
  NO               0                4
  YES              7              167
D108V11, continuous
D108V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5AS1 MUTATED                                             5
  OR5AS1 WILD-TYPE                                          89
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5AS1 MUTATED                                        1              1
  OR5AS1 WILD-TYPE                                     42             27
                  vv
clus               LIFELONG NON-SMOKER
  OR5AS1 MUTATED                     0
  OR5AS1 WILD-TYPE                   8
D108V13, multiclass
                                             clus
vv                                            OR5AS1 MUTATED OR5AS1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              5               89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      0                8
D108V14, continuous

Clustering(109) Variable = SCN7A MUTATION ANALYSIS
D109V1, survival
                 sevent
clus2              0  1
  SCN7A MUTATED    9  5
  SCN7A WILD-TYPE 88 65
  SCN7A MUTATED SCN7A WILD-TYPE 
             14             153 
  SCN7A MUTATED SCN7A WILD-TYPE 
              5              65 
$`SCN7A MUTATED`
TCGA-18-3409 TCGA-21-5787 TCGA-22-5478 TCGA-33-4566 TCGA-33-4583 TCGA-34-2608 
       79.46        10.82         0.79       173.79       141.34        32.84 
TCGA-39-5035 TCGA-43-6143 TCGA-51-4080 TCGA-60-2724 TCGA-66-2763 TCGA-66-2785 
       15.58         7.00         0.39         1.22         0.99         1.94 
TCGA-66-2788 TCGA-66-2795 
       22.98         4.01 

$`SCN7A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       29.85        21.57         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-5231 
      103.53        14.07        19.76         2.63        61.61        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       27.35        35.64         0.79        17.88        18.08        11.57 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
       18.84         8.48         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.95         0.59         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
        3.16        26.07        24.10        22.78        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 
       16.96        43.10        21.07         0.99         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       40.01         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  SCN7A MUTATED SCN7A WILD-TYPE 
           0.39            0.10 
  SCN7A MUTATED SCN7A WILD-TYPE 
         173.79          115.59 
  SCN7A MUTATED SCN7A WILD-TYPE 
           8.91           18.84 
[1] "0.4 - 173.8 (8.9)"  "0.1 - 115.6 (18.8)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
  "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SCN7A WILD-TYPE"   "SCN7A MUTATED" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE"   "SCN7A MUTATED" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
[1] "hr=" "1.6"
D109V2, continuous
D109V3, binary
                 cls
clus                0   1
  SCN7A MUTATED     2  12
  SCN7A WILD-TYPE  45 119
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      2   12
  SCN7A WILD-TYPE   45  119
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  FEMALE             2              45
  MALE              12             119
D109V4, continuous
[1] "Remove cluster labels:" "SCN7A MUTATED"         
clus
  SCN7A MUTATED SCN7A WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-22-4591      TCGA-22-4593 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"SCN7A WILD-TYPE" "SCN7A WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SCN7A MUTATED                                       3
  SCN7A WILD-TYPE                                     2
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SCN7A MUTATED                                        0
  SCN7A WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SCN7A MUTATED                                                            11
  SCN7A WILD-TYPE                                                         161
D109V5, multiclass
                                                             clus
vv                                                            SCN7A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            11
                                                             clus
vv                                                            SCN7A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             161
                 vv
clus               T1  T2  T3  T4
  SCN7A MUTATED     3   8   1   2
  SCN7A WILD-TYPE  33 108  13  10
D109V6, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  T1             3              33
  T2             8             108
  T3             1              13
  T4             2              10
                 vv
clus               N0  N1  N2  N3
  SCN7A MUTATED    10   3   1   0
  SCN7A WILD-TYPE 107  36  16   5
D109V7, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  N0            10             107
  N1             3              36
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  SCN7A MUTATED    13   0   0
  SCN7A WILD-TYPE 152   3   6
D109V8, multiclass
    clus
vv   SCN7A MUTATED SCN7A WILD-TYPE
  M0            13             152
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  SCN7A MUTATED    9  0      4
  SCN7A WILD-TYPE 88 38     37
D109V9, multiclass
        clus
vv       SCN7A MUTATED SCN7A WILD-TYPE
  I                  9              88
  II                 0              38
  III+IV             4              37
D109V10, binary
                 cls
clus                0   1
  SCN7A MUTATED     1  13
  SCN7A WILD-TYPE   3 161
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SCN7A MUTATED      1   13
  SCN7A WILD-TYPE    3  161
     clus
vv    SCN7A MUTATED SCN7A WILD-TYPE
  NO              1               3
  YES            13             161
D109V11, continuous
D109V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SCN7A MUTATED                                            11
  SCN7A WILD-TYPE                                          83
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SCN7A MUTATED                                        2              1
  SCN7A WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  SCN7A MUTATED                     0
  SCN7A WILD-TYPE                   8
D109V13, multiclass
                                             clus
vv                                            SCN7A MUTATED SCN7A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            11              83
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D109V14, continuous

Clustering(110) Variable = SNTG2 MUTATION ANALYSIS
D110V1, survival
                 sevent
clus2              0  1
  SNTG2 MUTATED    5  3
  SNTG2 WILD-TYPE 92 67
  SNTG2 MUTATED SNTG2 WILD-TYPE 
              8             159 
  SNTG2 MUTATED SNTG2 WILD-TYPE 
              3              67 
$`SNTG2 MUTATED`
TCGA-18-3411 TCGA-21-5782 TCGA-21-5787 TCGA-22-5473 TCGA-60-2722 TCGA-60-2723 
       46.52        31.63        10.82        63.52        24.10        22.78 
TCGA-66-2742 TCGA-85-6560 
       21.07         0.36 

$`SNTG2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       21.57         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30        11.77        31.69        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
        0.79        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       26.07         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
       22.98         4.04         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6561 
        4.01        49.05         0.79 

  SNTG2 MUTATED SNTG2 WILD-TYPE 
           0.36            0.10 
  SNTG2 MUTATED SNTG2 WILD-TYPE 
          63.52          173.79 
  SNTG2 MUTATED SNTG2 WILD-TYPE 
          23.44           16.60 
[1] "0.4 - 63.5 (23.4)"  "0.1 - 173.8 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE"   "SNTG2 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
  "SNTG2 MUTATED" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" "SNTG2 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"SNTG2 WILD-TYPE"   "SNTG2 MUTATED" "SNTG2 WILD-TYPE" 
[1] "hr=" "1.2"
D110V2, continuous
D110V3, binary
                 cls
clus                0   1
  SNTG2 MUTATED     3   5
  SNTG2 WILD-TYPE  44 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SNTG2 MUTATED      3    5
  SNTG2 WILD-TYPE   44  126
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D110V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  SNTG2 MUTATED                                       0
  SNTG2 WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  SNTG2 MUTATED                                        0
  SNTG2 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  SNTG2 MUTATED                                                             8
  SNTG2 WILD-TYPE                                                         164
D110V5, multiclass
                                                             clus
vv                                                            SNTG2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             8
                                                             clus
vv                                                            SNTG2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             164
                 vv
clus               T1  T2  T3  T4
  SNTG2 MUTATED     0   7   1   0
  SNTG2 WILD-TYPE  36 109  13  12
D110V6, multiclass
    clus
vv   SNTG2 MUTATED SNTG2 WILD-TYPE
  T1             0              36
  T2             7             109
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  SNTG2 MUTATED     3   3   2   0
  SNTG2 WILD-TYPE 114  36  15   5
D110V7, multiclass
    clus
vv   SNTG2 MUTATED SNTG2 WILD-TYPE
  N0             3             114
  N1             3              36
  N2             2              15
  N3             0               5
                 vv
clus               M0  M1  MX
  SNTG2 MUTATED     7   1   0
  SNTG2 WILD-TYPE 158   2   6
D110V8, multiclass
    clus
vv   SNTG2 MUTATED SNTG2 WILD-TYPE
  M0             7             158
  M1             1               2
  MX             0               6
                 vv
clus               I II III+IV
  SNTG2 MUTATED    3  1      4
  SNTG2 WILD-TYPE 94 37     37
D110V9, multiclass
        clus
vv       SNTG2 MUTATED SNTG2 WILD-TYPE
  I                  3              94
  II                 1              37
  III+IV             4              37
D110V10, binary
                 cls
clus                0   1
  SNTG2 MUTATED     1   7
  SNTG2 WILD-TYPE   3 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  SNTG2 MUTATED      1    7
  SNTG2 WILD-TYPE    3  167
     clus
vv    SNTG2 MUTATED SNTG2 WILD-TYPE
  NO              1               3
  YES             7             167
D110V11, continuous
D110V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  SNTG2 MUTATED                                             5
  SNTG2 WILD-TYPE                                          89
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  SNTG2 MUTATED                                        2              1
  SNTG2 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  SNTG2 MUTATED                     0
  SNTG2 WILD-TYPE                   8
D110V13, multiclass
                                             clus
vv                                            SNTG2 MUTATED SNTG2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             5              89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D110V14, continuous

Clustering(111) Variable = FRG2B MUTATION ANALYSIS
D111V1, survival
                 sevent
clus2              0  1
  FRG2B MUTATED    3  2
  FRG2B WILD-TYPE 94 68
  FRG2B MUTATED FRG2B WILD-TYPE 
              5             162 
  FRG2B MUTATED FRG2B WILD-TYPE 
              2              68 
$`FRG2B MUTATED`
TCGA-18-3416 TCGA-21-5782 TCGA-33-4532 TCGA-34-2596 TCGA-43-6143 
       28.34        31.63        82.98         2.63         7.00 

$`FRG2B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5784 
       46.88        60.89        34.78        15.55         9.30        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 
      173.79       103.53       141.34        14.07        19.76        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 
       17.88        18.08        11.57        18.84         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  FRG2B MUTATED FRG2B WILD-TYPE 
           2.63            0.10 
  FRG2B MUTATED FRG2B WILD-TYPE 
          82.98          173.79 
  FRG2B MUTATED FRG2B WILD-TYPE 
          28.34           17.42 
[1] "2.6 - 83.0 (28.3)"  "0.1 - 173.8 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
  "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" "FRG2B WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE"   "FRG2B MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
[1] "hr=" "1.2"
D111V2, continuous
D111V3, binary
                 cls
clus                0   1
  FRG2B MUTATED     1   4
  FRG2B WILD-TYPE  46 127
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FRG2B MUTATED      1    4
  FRG2B WILD-TYPE   46  127
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  FEMALE             1              46
  MALE               4             127
D111V4, continuous
[1] "Remove cluster labels:" "FRG2B MUTATED"         
clus
  FRG2B MUTATED FRG2B WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4599      TCGA-22-4601      TCGA-22-4604 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5472      TCGA-22-5473      TCGA-22-5474 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  FRG2B MUTATED                                       1
  FRG2B WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  FRG2B MUTATED                                        0
  FRG2B WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FRG2B MUTATED                                                             4
  FRG2B WILD-TYPE                                                         168
D111V5, multiclass
                                                             clus
vv                                                            FRG2B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             4
                                                             clus
vv                                                            FRG2B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             168
                 vv
clus               T1  T2  T3  T4
  FRG2B MUTATED     0   5   0   0
  FRG2B WILD-TYPE  36 111  14  12
D111V6, multiclass
    clus
vv   FRG2B MUTATED FRG2B WILD-TYPE
  T1             0              36
  T2             5             111
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  FRG2B MUTATED     3   2   0   0
  FRG2B WILD-TYPE 114  37  17   5
D111V7, multiclass
    clus
vv   FRG2B MUTATED FRG2B WILD-TYPE
  N0             3             114
  N1             2              37
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  FRG2B MUTATED     5   0   0
  FRG2B WILD-TYPE 160   3   6
D111V8, multiclass
    clus
vv   FRG2B MUTATED FRG2B WILD-TYPE
  M0             5             160
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  FRG2B MUTATED    3  2      0
  FRG2B WILD-TYPE 94 36     41
D111V9, multiclass
        clus
vv       FRG2B MUTATED FRG2B WILD-TYPE
  I                  3              94
  II                 2              36
  III+IV             0              41
D111V10, binary
                 cls
clus                0   1
  FRG2B MUTATED     0   5
  FRG2B WILD-TYPE   4 169
[1] "tbl2"
                 cls
clus              [,1] [,2]
  FRG2B MUTATED      0    5
  FRG2B WILD-TYPE    4  169
     clus
vv    FRG2B MUTATED FRG2B WILD-TYPE
  NO              0               4
  YES             5             169
D111V11, continuous
D111V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FRG2B MUTATED                                             2
  FRG2B WILD-TYPE                                          92
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FRG2B MUTATED                                        2              1
  FRG2B WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  FRG2B MUTATED                     0
  FRG2B WILD-TYPE                   8
D111V13, multiclass
                                             clus
vv                                            FRG2B MUTATED FRG2B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             2              92
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D111V14, continuous
[1] "Remove cluster labels:" "FRG2B MUTATED"         
clus
  FRG2B MUTATED FRG2B WILD-TYPE 
              2             103 
     TCGA-18-3406      TCGA-18-3417      TCGA-21-1078      TCGA-21-5786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-21-5787      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4593 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-4607      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5480      TCGA-22-5482      TCGA-22-5492 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4582      TCGA-33-4583 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-33-4586      TCGA-34-5240      TCGA-34-5241      TCGA-37-4133 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5021      TCGA-39-5022 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-39-5037      TCGA-39-5039      TCGA-43-2578      TCGA-43-3394 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-43-3920      TCGA-43-6647      TCGA-43-6770      TCGA-43-6771 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-56-1622      TCGA-56-5898      TCGA-56-6545      TCGA-56-6546 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2709      TCGA-60-2710 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2711      TCGA-60-2712      TCGA-60-2713      TCGA-60-2715 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2719      TCGA-60-2720      TCGA-60-2721      TCGA-60-2723 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-60-2724      TCGA-60-2725      TCGA-60-2726      TCGA-63-6202 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2727      TCGA-66-2734      TCGA-66-2742      TCGA-66-2744 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2754      TCGA-66-2755      TCGA-66-2756      TCGA-66-2757 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2758      TCGA-66-2759      TCGA-66-2763      TCGA-66-2765 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2766      TCGA-66-2767      TCGA-66-2770      TCGA-66-2771 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2773      TCGA-66-2777      TCGA-66-2778      TCGA-66-2780 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2781      TCGA-66-2782      TCGA-66-2783      TCGA-66-2786 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"FRG2B WILD-TYPE" "FRG2B WILD-TYPE" "FRG2B WILD-TYPE" 

Clustering(112) Variable = OR8K3 MUTATION ANALYSIS
D112V1, survival
                 sevent
clus2              0  1
  OR8K3 MUTATED    5  2
  OR8K3 WILD-TYPE 92 68
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              7             160 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              2              68 
$`OR8K3 MUTATED`
TCGA-18-3409 TCGA-21-1070 TCGA-22-5478 TCGA-37-5819 TCGA-39-5037 TCGA-66-2767 
       79.46       115.59         0.79         3.39         0.79         2.01 
TCGA-66-2793 
       10.06 

$`OR8K3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       14.60        44.22        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 
        3.95         0.43         7.82         6.81         0.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.64        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       18.08        11.57        18.84         8.48         7.00         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
       40.01        22.98         4.04         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
        4.01        49.05         0.36         0.79 

  OR8K3 MUTATED OR8K3 WILD-TYPE 
           0.79            0.10 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
         115.59          173.79 
  OR8K3 MUTATED OR8K3 WILD-TYPE 
           3.39           18.46 
[1] "0.8 - 115.6 (3.4)"  "0.1 - 173.8 (18.5)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
  "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE"   "OR8K3 MUTATED" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR8K3 WILD-TYPE"   "OR8K3 MUTATED" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
[1] "hr=" "1.6"
D112V2, continuous
D112V3, binary
                 cls
clus                0   1
  OR8K3 MUTATED     1   6
  OR8K3 WILD-TYPE  46 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      1    6
  OR8K3 WILD-TYPE   46  125
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  FEMALE             1              46
  MALE               6             125
D112V4, continuous
[1] "Remove cluster labels:" "OR8K3 MUTATED"         
clus
  OR8K3 MUTATED OR8K3 WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5480      TCGA-22-5482 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-60-2698 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"OR8K3 WILD-TYPE" "OR8K3 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR8K3 MUTATED                                       1
  OR8K3 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR8K3 MUTATED                                        0
  OR8K3 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR8K3 MUTATED                                                             6
  OR8K3 WILD-TYPE                                                         166
D112V5, multiclass
                                                             clus
vv                                                            OR8K3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             6
                                                             clus
vv                                                            OR8K3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                 vv
clus               T1  T2  T3  T4
  OR8K3 MUTATED     2   3   1   1
  OR8K3 WILD-TYPE  34 113  13  11
D112V6, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  T1             2              34
  T2             3             113
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR8K3 MUTATED     3   2   1   1
  OR8K3 WILD-TYPE 114  37  16   4
D112V7, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  N0             3             114
  N1             2              37
  N2             1              16
  N3             1               4
                 vv
clus               M0  M1  MX
  OR8K3 MUTATED     7   0   0
  OR8K3 WILD-TYPE 158   3   6
D112V8, multiclass
    clus
vv   OR8K3 MUTATED OR8K3 WILD-TYPE
  M0             7             158
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR8K3 MUTATED    1  1      4
  OR8K3 WILD-TYPE 96 37     37
D112V9, multiclass
        clus
vv       OR8K3 MUTATED OR8K3 WILD-TYPE
  I                  1              96
  II                 1              37
  III+IV             4              37
D112V10, binary
                 cls
clus                0   1
  OR8K3 MUTATED     0   7
  OR8K3 WILD-TYPE   4 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR8K3 MUTATED      0    7
  OR8K3 WILD-TYPE    4  167
     clus
vv    OR8K3 MUTATED OR8K3 WILD-TYPE
  NO              0               4
  YES             7             167
D112V11, continuous
D112V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR8K3 MUTATED                                             4
  OR8K3 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR8K3 MUTATED                                        2              1
  OR8K3 WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  OR8K3 MUTATED                     0
  OR8K3 WILD-TYPE                   8
D112V13, multiclass
                                             clus
vv                                            OR8K3 MUTATED OR8K3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D112V14, continuous

Clustering(113) Variable = OR5T1 MUTATION ANALYSIS
D113V1, survival
                 sevent
clus2              0  1
  OR5T1 MUTATED    7  1
  OR5T1 WILD-TYPE 90 69
  OR5T1 MUTATED OR5T1 WILD-TYPE 
              8             159 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
              1              69 
$`OR5T1 MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-21-5786 TCGA-33-4566 TCGA-66-2744 TCGA-66-2758 
       79.46        46.52        21.57       173.79         0.99        20.98 
TCGA-66-2768 TCGA-66-2787 
        2.01        40.01 

$`OR5T1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07         4.80        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       26.07        24.10        22.78         1.22        23.64        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       16.96        43.10        21.07         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
        3.98        12.00        24.95         1.94        25.97        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR5T1 MUTATED OR5T1 WILD-TYPE 
           0.99            0.10 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
         173.79          141.34 
  OR5T1 MUTATED OR5T1 WILD-TYPE 
          30.79           16.60 
[1] "1.0 - 173.8 (30.8)" "0.1 - 141.3 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE"   "OR5T1 MUTATED" "OR5T1 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR5T1 MUTATED" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" "OR5T1 WILD-TYPE" 
[1] "hr="     "7.6e+07"
D113V2, continuous
D113V3, binary
                 cls
clus                0   1
  OR5T1 MUTATED     1   9
  OR5T1 WILD-TYPE  46 122
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T1 MUTATED      1    9
  OR5T1 WILD-TYPE   46  122
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  FEMALE             1              46
  MALE               9             122
D113V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR5T1 MUTATED                                       1
  OR5T1 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR5T1 MUTATED                                        0
  OR5T1 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR5T1 MUTATED                                                             9
  OR5T1 WILD-TYPE                                                         163
D113V5, multiclass
                                                             clus
vv                                                            OR5T1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             9
                                                             clus
vv                                                            OR5T1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             163
                 vv
clus               T1  T2  T3  T4
  OR5T1 MUTATED     3   7   0   0
  OR5T1 WILD-TYPE  33 109  14  12
D113V6, multiclass
    clus
vv   OR5T1 MUTATED OR5T1 WILD-TYPE
  T1             3              33
  T2             7             109
  T3             0              14
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR5T1 MUTATED     7   2   1   0
  OR5T1 WILD-TYPE 110  37  16   5
D113V7, multiclass
    clus
vv   OR5T1 MUTATED OR5T1 WILD-TYPE
  N0             7             110
  N1             2              37
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR5T1 MUTATED    10   0   0
  OR5T1 WILD-TYPE 155   3   6
D113V8, multiclass
    clus
vv   OR5T1 MUTATED OR5T1 WILD-TYPE
  M0            10             155
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR5T1 MUTATED    6  2      1
  OR5T1 WILD-TYPE 91 36     40
D113V9, multiclass
        clus
vv       OR5T1 MUTATED OR5T1 WILD-TYPE
  I                  6              91
  II                 2              36
  III+IV             1              40
D113V10, binary
                 cls
clus                0   1
  OR5T1 MUTATED     0  10
  OR5T1 WILD-TYPE   4 164
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR5T1 MUTATED      0   10
  OR5T1 WILD-TYPE    4  164
     clus
vv    OR5T1 MUTATED OR5T1 WILD-TYPE
  NO              0               4
  YES            10             164
D113V11, continuous
D113V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR5T1 MUTATED                                             4
  OR5T1 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR5T1 MUTATED                                        2              3
  OR5T1 WILD-TYPE                                     41             25
                 vv
clus              LIFELONG NON-SMOKER
  OR5T1 MUTATED                     1
  OR5T1 WILD-TYPE                   7
D113V13, multiclass
                                             clus
vv                                            OR5T1 MUTATED OR5T1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          3              25
  LIFELONG NON-SMOKER                                     1               7
D113V14, continuous

Clustering(114) Variable = FCAR MUTATION ANALYSIS
D114V1, survival
                sevent
clus2             0  1
  FCAR MUTATED    5  3
  FCAR WILD-TYPE 92 67
  FCAR MUTATED FCAR WILD-TYPE 
             8            159 
  FCAR MUTATED FCAR WILD-TYPE 
             3             67 
$`FCAR MUTATED`
TCGA-18-3409 TCGA-18-5592 TCGA-21-1077 TCGA-22-5482 TCGA-43-6143 TCGA-51-4081 
       79.46         3.02        34.78        11.74         7.00         2.07 
TCGA-60-2698 TCGA-66-2785 
       10.22         1.94 

$`FCAR WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79        90.51        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
       60.89        15.55         9.30        31.63        29.85        21.57 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82         7.33         4.31         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        24.13        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       44.22         0.79        71.34        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60        82.98       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      103.53       141.34        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 
       17.88        18.08        11.57        18.84         8.48         6.02 
TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        2.79         5.42         9.96         0.95         0.59         0.39 
TCGA-51-4080 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        0.39        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       68.45        49.48        55.40        29.19         9.01        47.87 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        30.61         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  FCAR MUTATED FCAR WILD-TYPE 
          1.94           0.10 
  FCAR MUTATED FCAR WILD-TYPE 
         79.46         173.79 
  FCAR MUTATED FCAR WILD-TYPE 
          8.61          18.84 
[1] "1.9 - 79.5 (8.6)"   "0.1 - 173.8 (18.8)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
  "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE"   "FCAR MUTATED" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
[1] "hr=" "1.2"
D114V2, continuous
D114V3, binary
                cls
clus               0   1
  FCAR MUTATED     0   8
  FCAR WILD-TYPE  47 123
[1] "tbl2"
                cls
clus             [,1] [,2]
  FCAR MUTATED      0    8
  FCAR WILD-TYPE   47  123
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  FEMALE            0             47
  MALE              8            123
D114V4, continuous
[1] "Remove cluster labels:" "FCAR MUTATED"          
clus
  FCAR MUTATED FCAR WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  FCAR MUTATED                                       2
  FCAR WILD-TYPE                                     3
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  FCAR MUTATED                                        0
  FCAR WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  FCAR MUTATED                                                             6
  FCAR WILD-TYPE                                                         166
D114V5, multiclass
                                                             clus
vv                                                            FCAR MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            6
                                                             clus
vv                                                            FCAR WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            166
                vv
clus              T1  T2  T3  T4
  FCAR MUTATED     1   6   1   0
  FCAR WILD-TYPE  35 110  13  12
D114V6, multiclass
    clus
vv   FCAR MUTATED FCAR WILD-TYPE
  T1            1             35
  T2            6            110
  T3            1             13
  T4            0             12
                vv
clus              N0  N1  N2  N3
  FCAR MUTATED     5   3   0   0
  FCAR WILD-TYPE 112  36  17   5
D114V7, multiclass
    clus
vv   FCAR MUTATED FCAR WILD-TYPE
  N0            5            112
  N1            3             36
  N2            0             17
  N3            0              5
                vv
clus              M0  M1  MX
  FCAR MUTATED     8   0   0
  FCAR WILD-TYPE 157   3   6
D114V8, multiclass
    clus
vv   FCAR MUTATED FCAR WILD-TYPE
  M0            8            157
  M1            0              3
  MX            0              6
                vv
clus              I II III+IV
  FCAR MUTATED    3  4      0
  FCAR WILD-TYPE 94 34     41
D114V9, multiclass
        clus
vv       FCAR MUTATED FCAR WILD-TYPE
  I                 3             94
  II                4             34
  III+IV            0             41
D114V10, binary
                cls
clus               0   1
  FCAR MUTATED     0   8
  FCAR WILD-TYPE   4 166
[1] "tbl2"
                cls
clus             [,1] [,2]
  FCAR MUTATED      0    8
  FCAR WILD-TYPE    4  166
     clus
vv    FCAR MUTATED FCAR WILD-TYPE
  NO             0              4
  YES            8            166
D114V11, continuous
D114V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  FCAR MUTATED                                             5
  FCAR WILD-TYPE                                          89
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  FCAR MUTATED                                        2              1
  FCAR WILD-TYPE                                     41             27
                vv
clus             LIFELONG NON-SMOKER
  FCAR MUTATED                     0
  FCAR WILD-TYPE                   8
D114V13, multiclass
                                             clus
vv                                            FCAR MUTATED FCAR WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            5             89
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D114V14, continuous
[1] "Remove cluster labels:" "FCAR MUTATED"          
clus
  FCAR MUTATED FCAR WILD-TYPE 
             2            103 
    TCGA-18-3406     TCGA-18-3417     TCGA-21-1078     TCGA-21-5782 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-21-5786     TCGA-21-5787     TCGA-22-0944     TCGA-22-1002 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-1011     TCGA-22-1012     TCGA-22-1016     TCGA-22-4591 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4607     TCGA-22-4613     TCGA-22-5472 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-22-5473     TCGA-22-5474     TCGA-22-5480     TCGA-22-5492 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4533     TCGA-33-4547     TCGA-33-4582     TCGA-33-4583 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-33-4586     TCGA-34-5240     TCGA-34-5241     TCGA-37-4133 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-37-4135     TCGA-37-5819     TCGA-39-5021     TCGA-39-5022 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5024     TCGA-39-5027     TCGA-39-5028     TCGA-39-5029 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5030     TCGA-39-5031     TCGA-39-5035     TCGA-39-5036 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-39-5037     TCGA-39-5039     TCGA-43-2578     TCGA-43-3394 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-43-3920     TCGA-43-6647     TCGA-43-6770     TCGA-43-6771 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-56-1622     TCGA-56-5898     TCGA-56-6545     TCGA-56-6546 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2707     TCGA-60-2708     TCGA-60-2709     TCGA-60-2710 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2711     TCGA-60-2712     TCGA-60-2713     TCGA-60-2715 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2719     TCGA-60-2720     TCGA-60-2721     TCGA-60-2723 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-60-2724     TCGA-60-2725     TCGA-60-2726     TCGA-63-6202 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2727     TCGA-66-2734     TCGA-66-2742     TCGA-66-2744 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2754     TCGA-66-2755     TCGA-66-2756     TCGA-66-2757 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2758     TCGA-66-2759     TCGA-66-2763     TCGA-66-2765 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2766     TCGA-66-2767     TCGA-66-2770     TCGA-66-2771 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2773     TCGA-66-2777     TCGA-66-2778     TCGA-66-2780 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2781     TCGA-66-2782     TCGA-66-2783     TCGA-66-2786 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"FCAR WILD-TYPE" "FCAR WILD-TYPE" "FCAR WILD-TYPE" 

Clustering(115) Variable = OR2M7 MUTATION ANALYSIS
D115V1, survival
                 sevent
clus2              0  1
  OR2M7 MUTATED    6  2
  OR2M7 WILD-TYPE 91 68
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              8             159 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              2              68 
$`OR2M7 MUTATED`
TCGA-18-3409 TCGA-22-5471 TCGA-22-5473 TCGA-33-4532 TCGA-34-2596 TCGA-39-5024 
       79.46        31.69        63.52        82.98         2.63        70.03 
TCGA-60-2720 TCGA-66-2786 
        3.16        25.97 

$`OR2M7 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 
       34.75        13.12        19.30        11.77        64.90        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2600 TCGA-34-2608 
      103.53       141.34        14.07        19.76        61.61        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
       27.35        15.58        35.64         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34        30.61        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00        24.95         1.94        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  OR2M7 MUTATED OR2M7 WILD-TYPE 
           2.63            0.10 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
          82.98          173.79 
  OR2M7 MUTATED OR2M7 WILD-TYPE 
         47.605          16.600 
[1] "2.6 - 83.0 (47.6)"  "0.1 - 173.8 (16.6)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2M7 WILD-TYPE"   "OR2M7 MUTATED" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE"   "OR2M7 MUTATED" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
[1] "hr=" "3"  
D115V2, continuous
D115V3, binary
                 cls
clus                0   1
  OR2M7 MUTATED     3   5
  OR2M7 WILD-TYPE  44 126
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      3    5
  OR2M7 WILD-TYPE   44  126
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  FEMALE             3              44
  MALE               5             126
D115V4, continuous
[1] "Remove cluster labels:" "OR2M7 MUTATED"         
clus
  OR2M7 MUTATED OR2M7 WILD-TYPE 
              1              35 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3410      TCGA-18-3414 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-18-3419      TCGA-21-5782      TCGA-21-5787      TCGA-22-4591 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4595      TCGA-22-4599      TCGA-22-4601 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-4604      TCGA-22-4613      TCGA-22-5472      TCGA-22-5474 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5477      TCGA-22-5478      TCGA-22-5480      TCGA-22-5482 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-22-5485      TCGA-22-5489      TCGA-22-5491      TCGA-22-5492 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-34-5234      TCGA-37-4133      TCGA-37-4135      TCGA-37-5819 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2698      TCGA-60-2712      TCGA-60-2715      TCGA-60-2725 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
     TCGA-60-2726      TCGA-70-6722      TCGA-70-6723 
"OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" "OR2M7 WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2M7 MUTATED                                       1
  OR2M7 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2M7 MUTATED                                        0
  OR2M7 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2M7 MUTATED                                                             7
  OR2M7 WILD-TYPE                                                         165
D115V5, multiclass
                                                             clus
vv                                                            OR2M7 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             7
                                                             clus
vv                                                            OR2M7 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             165
                 vv
clus               T1  T2  T3  T4
  OR2M7 MUTATED     2   5   1   0
  OR2M7 WILD-TYPE  34 111  13  12
D115V6, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  T1             2              34
  T2             5             111
  T3             1              13
  T4             0              12
                 vv
clus               N0  N1  N2  N3
  OR2M7 MUTATED     6   1   1   0
  OR2M7 WILD-TYPE 111  38  16   5
D115V7, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  N0             6             111
  N1             1              38
  N2             1              16
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2M7 MUTATED     8   0   0
  OR2M7 WILD-TYPE 157   3   6
D115V8, multiclass
    clus
vv   OR2M7 MUTATED OR2M7 WILD-TYPE
  M0             8             157
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR2M7 MUTATED    5  1      1
  OR2M7 WILD-TYPE 92 37     40
D115V9, multiclass
        clus
vv       OR2M7 MUTATED OR2M7 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             1              40
D115V10, binary
                 cls
clus                0   1
  OR2M7 MUTATED     1   7
  OR2M7 WILD-TYPE   3 167
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2M7 MUTATED      1    7
  OR2M7 WILD-TYPE    3  167
     clus
vv    OR2M7 MUTATED OR2M7 WILD-TYPE
  NO              1               3
  YES             7             167
D115V11, continuous
D115V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2M7 MUTATED                                             4
  OR2M7 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2M7 MUTATED                                        3              1
  OR2M7 WILD-TYPE                                     40             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2M7 MUTATED                     0
  OR2M7 WILD-TYPE                   8
D115V13, multiclass
                                             clus
vv                                            OR2M7 MUTATED OR2M7 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  3              40
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D115V14, continuous

Clustering(116) Variable = CPXCR1 MUTATION ANALYSIS
D116V1, survival
                  sevent
clus2               0  1
  CPXCR1 MUTATED    4  1
  CPXCR1 WILD-TYPE 93 69
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               5              162 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               1               69 
$`CPXCR1 MUTATED`
TCGA-18-5592 TCGA-37-3783 TCGA-60-2698 TCGA-60-2710 TCGA-60-2722 
        3.02         3.95        10.22        55.40        24.10 

$`CPXCR1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        5.52         4.96         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 
        8.48         7.00         6.02         2.79         5.42         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 
        0.95         0.59         0.39         0.39         2.07        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        0.10         2.04         1.02        21.70        68.45        49.48 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
            3.02             0.10 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           55.40           173.79 
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
           10.22            17.98 
[1] "3.0 - 55.4 (10.2)"  "0.1 - 173.8 (18.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
  "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"CPXCR1 WILD-TYPE"   "CPXCR1 MUTATED" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
[1] "hr=" "1.5"
D116V2, continuous
D116V3, binary
                  cls
clus                 0   1
  CPXCR1 MUTATED     1   5
  CPXCR1 WILD-TYPE  46 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      1    5
  CPXCR1 WILD-TYPE   46  126
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  FEMALE              1               46
  MALE                5              126
D116V4, continuous
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               2               34 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5782       TCGA-21-5787       TCGA-22-4591 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4595       TCGA-22-4599       TCGA-22-4601 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4604       TCGA-22-4613       TCGA-22-5472       TCGA-22-5473 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-34-5234       TCGA-37-4133       TCGA-37-4135 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-5819       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6723 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CPXCR1 MUTATED                                       0
  CPXCR1 WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CPXCR1 MUTATED                                        0
  CPXCR1 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CPXCR1 MUTATED                                                             6
  CPXCR1 WILD-TYPE                                                         166
D116V5, multiclass
                                                             clus
vv                                                            CPXCR1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              6
                                                             clus
vv                                                            CPXCR1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              166
                  vv
clus                T1  T2  T3  T4
  CPXCR1 MUTATED     1   2   3   0
  CPXCR1 WILD-TYPE  35 114  11  12
D116V6, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  T1              1               35
  T2              2              114
  T3              3               11
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  CPXCR1 MUTATED     1   4   1   0
  CPXCR1 WILD-TYPE 116  35  16   5
D116V7, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  N0              1              116
  N1              4               35
  N2              1               16
  N3              0                5
                  vv
clus                M0  M1  MX
  CPXCR1 MUTATED     6   0   0
  CPXCR1 WILD-TYPE 159   3   6
D116V8, multiclass
    clus
vv   CPXCR1 MUTATED CPXCR1 WILD-TYPE
  M0              6              159
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  CPXCR1 MUTATED    0  4      2
  CPXCR1 WILD-TYPE 97 34     39
D116V9, multiclass
        clus
vv       CPXCR1 MUTATED CPXCR1 WILD-TYPE
  I                   0               97
  II                  4               34
  III+IV              2               39
D116V10, binary
                  cls
clus                 0   1
  CPXCR1 MUTATED     0   6
  CPXCR1 WILD-TYPE   4 168
[1] "tbl2"
                  cls
clus               [,1] [,2]
  CPXCR1 MUTATED      0    6
  CPXCR1 WILD-TYPE    4  168
     clus
vv    CPXCR1 MUTATED CPXCR1 WILD-TYPE
  NO               0                4
  YES              6              168
D116V11, continuous
D116V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CPXCR1 MUTATED                                             3
  CPXCR1 WILD-TYPE                                          91
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CPXCR1 MUTATED                                        1              0
  CPXCR1 WILD-TYPE                                     42             28
                  vv
clus               LIFELONG NON-SMOKER
  CPXCR1 MUTATED                     1
  CPXCR1 WILD-TYPE                   7
D116V13, multiclass
                                             clus
vv                                            CPXCR1 MUTATED CPXCR1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              3               91
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   1               42
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      1                7
D116V14, continuous
[1] "Remove cluster labels:" "CPXCR1 MUTATED"        
clus
  CPXCR1 MUTATED CPXCR1 WILD-TYPE 
               1              104 
      TCGA-18-3406       TCGA-18-3417       TCGA-21-1078       TCGA-21-5782 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-21-5786       TCGA-21-5787       TCGA-22-0944       TCGA-22-1002 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-1011       TCGA-22-1012       TCGA-22-1016       TCGA-22-4591 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-4593       TCGA-22-4607       TCGA-22-4613       TCGA-22-5472 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5473       TCGA-22-5474       TCGA-22-5480       TCGA-22-5482 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4533       TCGA-33-4547       TCGA-33-4582 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-33-4583       TCGA-33-4586       TCGA-34-5240       TCGA-34-5241 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-37-4133       TCGA-37-4135       TCGA-37-5819       TCGA-39-5021 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-6143       TCGA-43-6647 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-43-6770       TCGA-43-6771       TCGA-56-1622       TCGA-56-5898 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-56-6545       TCGA-56-6546       TCGA-60-2707       TCGA-60-2708 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2711       TCGA-60-2712       TCGA-60-2713 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2715       TCGA-60-2719       TCGA-60-2720       TCGA-60-2721 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-60-2723       TCGA-60-2724       TCGA-60-2725       TCGA-60-2726 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-63-6202       TCGA-66-2727       TCGA-66-2734       TCGA-66-2742 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2744       TCGA-66-2754       TCGA-66-2755       TCGA-66-2756 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2757       TCGA-66-2758       TCGA-66-2759       TCGA-66-2763 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2765       TCGA-66-2766       TCGA-66-2767       TCGA-66-2770 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2771       TCGA-66-2773       TCGA-66-2777       TCGA-66-2778 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2780       TCGA-66-2781       TCGA-66-2782       TCGA-66-2783 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2786       TCGA-66-2787       TCGA-66-2788       TCGA-66-2789 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2791       TCGA-66-2792       TCGA-66-2793       TCGA-66-2794 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 
      TCGA-66-2795       TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" "CPXCR1 WILD-TYPE" 

Clustering(117) Variable = COL6A6 MUTATION ANALYSIS
D117V1, survival
                  sevent
clus2               0  1
  COL6A6 MUTATED    9  9
  COL6A6 WILD-TYPE 88 61
  COL6A6 MUTATED COL6A6 WILD-TYPE 
              18              149 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
               9               61 
$`COL6A6 MUTATED`
TCGA-18-3410 TCGA-22-1016 TCGA-22-4613 TCGA-33-4582 TCGA-34-2600 TCGA-34-5231 
        4.80        27.02        11.77       103.53        61.61        50.24 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 TCGA-39-5029 TCGA-43-2578 TCGA-43-3920 
        3.39        74.07        55.17        24.33        18.08        18.84 
TCGA-60-2698 TCGA-60-2711 TCGA-60-2722 TCGA-66-2763 TCGA-66-2782 TCGA-66-2786 
       10.22        29.19        24.10         0.99        12.00        25.97 

$`COL6A6 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       14.10        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       13.12        19.30        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2608 
      173.79       141.34        14.07        19.76         2.63        32.84 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 
       22.95         5.52         4.96         3.95         0.43         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 
        6.81         0.39        44.71        68.58        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.71         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       17.88        11.57         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 
        2.07        28.93         0.10         2.04         1.02        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       68.45        49.48        55.40         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       30.61         3.16        26.07        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 
        0.92         0.99         0.99        20.98        25.02         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 
        2.01        19.00        12.03         3.98        24.95         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       54.08         4.01        49.05         0.36         0.79 

  COL6A6 MUTATED COL6A6 WILD-TYPE 
            0.99             0.10 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
          103.53           173.79 
  COL6A6 MUTATED COL6A6 WILD-TYPE 
          24.215           15.580 
[1] "1.0 - 103.5 (24.2)" "0.1 - 173.8 (15.6)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "COL6A6 MUTATED"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "COL6A6 MUTATED"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5236       TCGA-34-5239       TCGA-34-5240       TCGA-34-5241 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
  "COL6A6 MUTATED"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5022       TCGA-39-5024       TCGA-39-5027       TCGA-39-5028 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5029       TCGA-39-5030       TCGA-39-5031       TCGA-39-5035 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-39-5036       TCGA-39-5037       TCGA-39-5039       TCGA-43-2578 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-43-3394       TCGA-43-3920       TCGA-43-5668       TCGA-43-6143 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-43-6647       TCGA-43-6770       TCGA-43-6771       TCGA-46-3768 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-51-4081       TCGA-56-1622       TCGA-56-5897       TCGA-56-6545 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-56-6546       TCGA-60-2698       TCGA-60-2707       TCGA-60-2708 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2709       TCGA-60-2710       TCGA-60-2711       TCGA-60-2712 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" 
      TCGA-60-2713       TCGA-60-2715       TCGA-60-2719       TCGA-60-2720 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2721       TCGA-60-2722       TCGA-60-2723       TCGA-60-2724 
"COL6A6 WILD-TYPE"   "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2742       TCGA-66-2744       TCGA-66-2754       TCGA-66-2755 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2756       TCGA-66-2757       TCGA-66-2758       TCGA-66-2759 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "COL6A6 MUTATED" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE"   "COL6A6 MUTATED" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" "COL6A6 WILD-TYPE" 
[1] "hr=" "1"  
D117V2, continuous
D117V3, binary
                  cls
clus                 0   1
  COL6A6 MUTATED     6  13
  COL6A6 WILD-TYPE  41 118
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED      6   13
  COL6A6 WILD-TYPE   41  118
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  FEMALE              6               41
  MALE               13              118
D117V4, continuous
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  COL6A6 MUTATED                                       1
  COL6A6 WILD-TYPE                                     4
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  COL6A6 MUTATED                                        0
  COL6A6 WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  COL6A6 MUTATED                                                            18
  COL6A6 WILD-TYPE                                                         154
D117V5, multiclass
                                                             clus
vv                                                            COL6A6 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             18
                                                             clus
vv                                                            COL6A6 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              154
                  vv
clus                T1  T2  T3  T4
  COL6A6 MUTATED     7  10   2   0
  COL6A6 WILD-TYPE  29 106  12  12
D117V6, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  T1              7               29
  T2             10              106
  T3              2               12
  T4              0               12
                  vv
clus                N0  N1  N2  N3
  COL6A6 MUTATED    14   3   2   0
  COL6A6 WILD-TYPE 103  36  15   5
D117V7, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  N0             14              103
  N1              3               36
  N2              2               15
  N3              0                5
                  vv
clus                M0  M1  MX
  COL6A6 MUTATED    19   0   0
  COL6A6 WILD-TYPE 146   3   6
D117V8, multiclass
    clus
vv   COL6A6 MUTATED COL6A6 WILD-TYPE
  M0             19              146
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  COL6A6 MUTATED   11  5      3
  COL6A6 WILD-TYPE 86 33     38
D117V9, multiclass
        clus
vv       COL6A6 MUTATED COL6A6 WILD-TYPE
  I                  11               86
  II                  5               33
  III+IV              3               38
D117V10, binary
                  cls
clus                 0   1
  COL6A6 MUTATED     0  19
  COL6A6 WILD-TYPE   4 155
[1] "tbl2"
                  cls
clus               [,1] [,2]
  COL6A6 MUTATED      0   19
  COL6A6 WILD-TYPE    4  155
     clus
vv    COL6A6 MUTATED COL6A6 WILD-TYPE
  NO               0                4
  YES             19              155
D117V11, continuous
D117V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  COL6A6 MUTATED                                            12
  COL6A6 WILD-TYPE                                          82
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  COL6A6 MUTATED                                        5              1
  COL6A6 WILD-TYPE                                     38             27
                  vv
clus               LIFELONG NON-SMOKER
  COL6A6 MUTATED                     1
  COL6A6 WILD-TYPE                   7
D117V13, multiclass
                                             clus
vv                                            COL6A6 MUTATED COL6A6 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             12               82
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   5               38
  CURRENT SMOKER                                           1               27
  LIFELONG NON-SMOKER                                      1                7
D117V14, continuous

Clustering(118) Variable = GP2 MUTATION ANALYSIS
D118V1, survival
               sevent
clus2            0  1
  GP2 MUTATED    5  4
  GP2 WILD-TYPE 92 66
  GP2 MUTATED GP2 WILD-TYPE 
            9           158 
  GP2 MUTATED GP2 WILD-TYPE 
            4            66 
$`GP2 MUTATED`
TCGA-22-4613 TCGA-34-5239 TCGA-43-5668 TCGA-43-6143 TCGA-51-4079 TCGA-60-2698 
       11.77        10.82         8.48         7.00         0.39        10.22 
TCGA-66-2742 TCGA-66-2789 TCGA-66-2800 
       21.07         4.04        49.05 

$`GP2 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-5471 TCGA-22-5472 
       38.17        34.75        13.12        19.30        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60        82.98       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        4.96         3.95         0.43         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        3.39        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       35.64         0.79        17.88        18.08        11.57        18.84 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       47.87        35.34        30.61         3.16        26.07        24.10 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       22.78         1.22        23.64        11.77        16.96        43.10 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         5.03        30.02        10.06        54.08         4.01 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  GP2 MUTATED GP2 WILD-TYPE 
         0.39          0.10 
  GP2 MUTATED GP2 WILD-TYPE 
        49.05        173.79 
  GP2 MUTATED GP2 WILD-TYPE 
        10.22         18.92 
[1] "0.4 - 49.0 (10.2)"  "0.1 - 173.8 (18.9)"
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED"   "GP2 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-85-6560    TCGA-85-6561 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED"   "GP2 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-85-6560    TCGA-85-6561 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3408    TCGA-18-3409    TCGA-18-3410 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3411    TCGA-18-3412    TCGA-18-3414    TCGA-18-3415    TCGA-18-3416 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-3417    TCGA-18-3419    TCGA-18-3421    TCGA-18-4083    TCGA-18-4086 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-18-4721    TCGA-18-5592    TCGA-18-5595    TCGA-21-1070    TCGA-21-1071 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-1076    TCGA-21-1077    TCGA-21-1078    TCGA-21-1081    TCGA-21-5782 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5784    TCGA-21-5786    TCGA-21-5787    TCGA-22-0944    TCGA-22-1002 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-1011    TCGA-22-1012    TCGA-22-1016    TCGA-22-4591    TCGA-22-4593 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4595    TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-4607 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4613    TCGA-22-5471    TCGA-22-5472    TCGA-22-5473    TCGA-22-5474 
  "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482    TCGA-22-5485 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-33-4532    TCGA-33-4533 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4538    TCGA-33-4547    TCGA-33-4566    TCGA-33-4582    TCGA-33-4583 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-33-4586    TCGA-33-6737    TCGA-34-2596    TCGA-34-2600    TCGA-34-2608 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-34-5231    TCGA-34-5232    TCGA-34-5234    TCGA-34-5236    TCGA-34-5239 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-34-5240    TCGA-34-5241    TCGA-34-5927    TCGA-34-5928    TCGA-34-5929 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-3783    TCGA-37-3789    TCGA-37-4133    TCGA-37-4135    TCGA-37-4141 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-5819    TCGA-39-5016    TCGA-39-5019    TCGA-39-5021    TCGA-39-5022 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5024    TCGA-39-5027    TCGA-39-5028    TCGA-39-5029    TCGA-39-5030 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-39-5031    TCGA-39-5035    TCGA-39-5036    TCGA-39-5037    TCGA-39-5039 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-43-2578    TCGA-43-3394    TCGA-43-3920    TCGA-43-5668    TCGA-43-6143 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED"   "GP2 MUTATED" 
   TCGA-43-6647    TCGA-43-6770    TCGA-43-6771    TCGA-46-3768    TCGA-46-6025 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-46-6026    TCGA-51-4079    TCGA-51-4080    TCGA-51-4081    TCGA-56-1622 
"GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-56-5897    TCGA-56-6545    TCGA-56-6546    TCGA-60-2698    TCGA-60-2707 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-60-2708    TCGA-60-2709    TCGA-60-2710    TCGA-60-2711    TCGA-60-2712 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2713    TCGA-60-2715    TCGA-60-2719    TCGA-60-2720    TCGA-60-2721 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2722    TCGA-60-2723    TCGA-60-2724    TCGA-60-2725    TCGA-60-2726 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2727    TCGA-66-2734    TCGA-66-2742    TCGA-66-2744    TCGA-66-2754 
"GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2755    TCGA-66-2756    TCGA-66-2757    TCGA-66-2758    TCGA-66-2759 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2763    TCGA-66-2765    TCGA-66-2766    TCGA-66-2767    TCGA-66-2768 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2770    TCGA-66-2771    TCGA-66-2773    TCGA-66-2777    TCGA-66-2778 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2780    TCGA-66-2781    TCGA-66-2782    TCGA-66-2783    TCGA-66-2785 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-66-2786    TCGA-66-2787    TCGA-66-2788    TCGA-66-2789    TCGA-66-2791 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" "GP2 WILD-TYPE" 
   TCGA-66-2792    TCGA-66-2793    TCGA-66-2794    TCGA-66-2795    TCGA-66-2800 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE"   "GP2 MUTATED" 
   TCGA-85-6560    TCGA-85-6561 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" 
[1] "hr=" "2"  
D118V2, continuous
D118V3, binary
               cls
clus              0   1
  GP2 MUTATED     2   9
  GP2 WILD-TYPE  45 122
[1] "tbl2"
               cls
clus            [,1] [,2]
  GP2 MUTATED      2    9
  GP2 WILD-TYPE   45  122
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  FEMALE           2            45
  MALE             9           122
D118V4, continuous
[1] "Remove cluster labels:" "GP2 MUTATED"           
clus
  GP2 MUTATED GP2 WILD-TYPE 
            2            34 
   TCGA-18-3406    TCGA-18-3407    TCGA-18-3410    TCGA-18-3414    TCGA-18-3419 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-21-5782    TCGA-21-5787    TCGA-22-4591    TCGA-22-4593    TCGA-22-4595 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-4599    TCGA-22-4601    TCGA-22-4604    TCGA-22-5472    TCGA-22-5473 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5474    TCGA-22-5477    TCGA-22-5478    TCGA-22-5480    TCGA-22-5482 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-22-5485    TCGA-22-5489    TCGA-22-5491    TCGA-22-5492    TCGA-34-5234 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-37-4133    TCGA-37-4135    TCGA-37-5819    TCGA-60-2712    TCGA-60-2715 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
   TCGA-60-2725    TCGA-60-2726    TCGA-70-6722    TCGA-70-6723 
"GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" "GP2 WILD-TYPE" 
               vv
clus            LUNG BASALOID SQUAMOUS CELL CARCINOMA
  GP2 MUTATED                                       1
  GP2 WILD-TYPE                                     4
               vv
clus            LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  GP2 MUTATED                                        0
  GP2 WILD-TYPE                                      1
               vv
clus            LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  GP2 MUTATED                                                            10
  GP2 WILD-TYPE                                                         162
D118V5, multiclass
                                                             clus
vv                                                            GP2 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                 1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)          10
                                                             clus
vv                                                            GP2 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           162
               vv
clus             T1  T2  T3  T4
  GP2 MUTATED     4   4   0   3
  GP2 WILD-TYPE  32 112  14   9
D118V6, multiclass
    clus
vv   GP2 MUTATED GP2 WILD-TYPE
  T1           4            32
  T2           4           112
  T3           0            14
  T4           3             9
               vv
clus             N0  N1  N2  N3
  GP2 MUTATED     7   3   0   1
  GP2 WILD-TYPE 110  36  17   4
D118V7, multiclass
    clus
vv   GP2 MUTATED GP2 WILD-TYPE
  N0           7           110
  N1           3            36
  N2           0            17
  N3           1             4
               vv
clus             M0  M1  MX
  GP2 MUTATED     9   1   0
  GP2 WILD-TYPE 156   2   6
D118V8, multiclass
    clus
vv   GP2 MUTATED GP2 WILD-TYPE
  M0           9           156
  M1           1             2
  MX           0             6
               vv
clus             I II III+IV
  GP2 MUTATED    4  3      4
  GP2 WILD-TYPE 93 35     37
D118V9, multiclass
        clus
vv       GP2 MUTATED GP2 WILD-TYPE
  I                4            93
  II               3            35
  III+IV           4            37
D118V10, binary
               cls
clus              0   1
  GP2 MUTATED     0  11
  GP2 WILD-TYPE   4 163
[1] "tbl2"
               cls
clus            [,1] [,2]
  GP2 MUTATED      0   11
  GP2 WILD-TYPE    4  163
     clus
vv    GP2 MUTATED GP2 WILD-TYPE
  NO            0             4
  YES          11           163
D118V11, continuous
D118V12, continuous
               vv
clus            CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  GP2 MUTATED                                             6
  GP2 WILD-TYPE                                          88
               vv
clus            CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  GP2 MUTATED                                        4              0
  GP2 WILD-TYPE                                     39             28
               vv
clus            LIFELONG NON-SMOKER
  GP2 MUTATED                     0
  GP2 WILD-TYPE                   8
D118V13, multiclass
                                             clus
vv                                            GP2 MUTATED GP2 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS           6            88
  CURRENT REFORMED SMOKER FOR > 15 YEARS                4            39
  CURRENT SMOKER                                        0            28
  LIFELONG NON-SMOKER                                   0             8
D118V14, continuous

Clustering(119) Variable = CCDC85A MUTATION ANALYSIS
D119V1, survival
                   sevent
clus2                0  1
  CCDC85A MUTATED    8  1
  CCDC85A WILD-TYPE 89 69
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                9               158 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                1                69 
$`CCDC85A MUTATED`
TCGA-18-3414 TCGA-21-1070 TCGA-33-4533 TCGA-33-4583 TCGA-39-5016 TCGA-39-5036 
       13.02       115.59       114.05       141.34        74.07        35.64 
TCGA-60-2719 TCGA-66-2763 TCGA-66-2785 
       30.61         0.99         1.94 

$`CCDC85A WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       27.02        20.45        35.08        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       13.12        19.30        11.77        31.69        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       14.60        44.22         0.79        71.34        11.74        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60        82.98        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
      173.79       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 
        0.43         7.82         6.81         0.39         3.39        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 
        1.94        27.35        15.58         0.79        17.88        18.08 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.57        18.84         8.48         7.00         6.02         2.79 
TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        5.42         9.96         0.95         0.59         0.39         0.39 
TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 
        2.07        28.93         0.10         2.04         1.02        10.22 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        68.45        49.48        55.40        29.19         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       47.87        35.34         3.16        26.07        24.10        22.78 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
        1.22        23.64        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         2.01         1.02         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       12.00        24.95        25.97        40.01        22.98         4.04 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-85-6560 TCGA-85-6561 
        0.36         0.79 

  CCDC85A MUTATED CCDC85A WILD-TYPE 
             0.99              0.10 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
           141.34            173.79 
  CCDC85A MUTATED CCDC85A WILD-TYPE 
            35.64             16.78 
[1] "1.0 - 141.3 (35.6)" "0.1 - 173.8 (16.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-21-1076        TCGA-21-1077        TCGA-21-1078        TCGA-21-1081 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5784        TCGA-21-5786        TCGA-21-5787 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1002        TCGA-22-1011        TCGA-22-1012 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-1016        TCGA-22-4591        TCGA-22-4593        TCGA-22-4595 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5480 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5485        TCGA-22-5489        TCGA-22-5491 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5492        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4583 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" 
       TCGA-33-4586        TCGA-33-6737        TCGA-34-2596        TCGA-34-2600 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-2608        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-37-3783 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-3789        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5016        TCGA-39-5019        TCGA-39-5021 
"CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5028 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5031        TCGA-39-5035 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-43-2578 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-3394        TCGA-43-3920        TCGA-43-5668        TCGA-43-6143 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-46-3768 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-51-4079        TCGA-51-4080 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-51-4081        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-56-6546        TCGA-60-2698        TCGA-60-2707        TCGA-60-2708 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2709        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2715        TCGA-60-2719        TCGA-60-2720 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2742        TCGA-66-2744        TCGA-66-2754        TCGA-66-2755 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2756        TCGA-66-2757        TCGA-66-2758        TCGA-66-2759 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2763        TCGA-66-2765        TCGA-66-2766        TCGA-66-2767 
  "CCDC85A MUTATED" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2768        TCGA-66-2770        TCGA-66-2771        TCGA-66-2773 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2777        TCGA-66-2778        TCGA-66-2780        TCGA-66-2781 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2782        TCGA-66-2783        TCGA-66-2785        TCGA-66-2786 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE"   "CCDC85A MUTATED" "CCDC85A WILD-TYPE" 
       TCGA-66-2787        TCGA-66-2788        TCGA-66-2789        TCGA-66-2791 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-66-2800        TCGA-85-6560        TCGA-85-6561 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
[1] "hr=" "9.4"
D119V2, continuous
D119V3, binary
                   cls
clus                  0   1
  CCDC85A MUTATED     4   5
  CCDC85A WILD-TYPE  43 126
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC85A MUTATED      4    5
  CCDC85A WILD-TYPE   43  126
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  FEMALE               4                43
  MALE                 5               126
D119V4, continuous
[1] "Remove cluster labels:" "CCDC85A MUTATED"       
clus
  CCDC85A MUTATED CCDC85A WILD-TYPE 
                1                35 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3410        TCGA-18-3419 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5787        TCGA-22-4591        TCGA-22-4593 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4599        TCGA-22-4601        TCGA-22-4604 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5480        TCGA-22-5482 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-34-5234        TCGA-37-4133        TCGA-37-4135        TCGA-37-5819 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2712        TCGA-60-2715        TCGA-60-2725 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
       TCGA-60-2726        TCGA-70-6722        TCGA-70-6723 
"CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" "CCDC85A WILD-TYPE" 
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  CCDC85A MUTATED                                       1
  CCDC85A WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  CCDC85A MUTATED                                        0
  CCDC85A WILD-TYPE                                      1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  CCDC85A MUTATED                                                             8
  CCDC85A WILD-TYPE                                                         164
D119V5, multiclass
                                                             clus
vv                                                            CCDC85A MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               8
                                                             clus
vv                                                            CCDC85A WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               164
                   vv
clus                 T1  T2  T3  T4
  CCDC85A MUTATED     2   5   1   1
  CCDC85A WILD-TYPE  34 111  13  11
D119V6, multiclass
    clus
vv   CCDC85A MUTATED CCDC85A WILD-TYPE
  T1               2                34
  T2               5               111
  T3               1                13
  T4               1                11
                   vv
clus                 N0  N1  N2  N3
  CCDC85A MUTATED     7   2   0   0
  CCDC85A WILD-TYPE 110  37  17   5
D119V7, multiclass
    clus
vv   CCDC85A MUTATED CCDC85A WILD-TYPE
  N0               7               110
  N1               2                37
  N2               0                17
  N3               0                 5
                   vv
clus                 M0  M1  MX
  CCDC85A MUTATED     8   1   0
  CCDC85A WILD-TYPE 157   2   6
D119V8, multiclass
    clus
vv   CCDC85A MUTATED CCDC85A WILD-TYPE
  M0               8               157
  M1               1                 2
  MX               0                 6
                   vv
clus                 I II III+IV
  CCDC85A MUTATED    6  1      2
  CCDC85A WILD-TYPE 91 37     39
D119V9, multiclass
        clus
vv       CCDC85A MUTATED CCDC85A WILD-TYPE
  I                    6                91
  II                   1                37
  III+IV               2                39
D119V10, binary
                   cls
clus                  0   1
  CCDC85A MUTATED     0   9
  CCDC85A WILD-TYPE   4 165
[1] "tbl2"
                   cls
clus                [,1] [,2]
  CCDC85A MUTATED      0    9
  CCDC85A WILD-TYPE    4  165
     clus
vv    CCDC85A MUTATED CCDC85A WILD-TYPE
  NO                0                 4
  YES               9               165
D119V11, continuous
D119V12, continuous
                   vv
clus                CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  CCDC85A MUTATED                                             8
  CCDC85A WILD-TYPE                                          86
                   vv
clus                CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  CCDC85A MUTATED                                        1              0
  CCDC85A WILD-TYPE                                     42             28
                   vv
clus                LIFELONG NON-SMOKER
  CCDC85A MUTATED                     0
  CCDC85A WILD-TYPE                   8
D119V13, multiclass
                                             clus
vv                                            CCDC85A MUTATED CCDC85A WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS               8                86
  CURRENT REFORMED SMOKER FOR > 15 YEARS                    1                42
  CURRENT SMOKER                                            0                28
  LIFELONG NON-SMOKER                                       0                 8
D119V14, continuous

Clustering(120) Variable = OR2T3 MUTATION ANALYSIS
D120V1, survival
                 sevent
clus2              0  1
  OR2T3 MUTATED    3  2
  OR2T3 WILD-TYPE 94 68
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              5             162 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
              2              68 
$`OR2T3 MUTATED`
TCGA-33-4566 TCGA-43-3920 TCGA-43-6143 TCGA-66-2773 TCGA-66-2787 
      173.79        18.84         7.00         3.02        40.01 

$`OR2T3 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 
       31.63        29.85        21.57        10.82         7.33         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        14.10        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        13.12        19.30        11.77        31.69 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 
       64.90        63.52        14.60        44.22         0.79        71.34 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60        82.98 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       103.53       141.34        14.07 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       19.76         2.63        61.61        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 
        5.52         4.96         3.95         0.43         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64         0.79        17.88        18.08        11.57 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 
        8.48         6.02         2.79         5.42         9.96         0.95 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 
        0.59         0.39         0.39         2.07        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
        2.04         1.02        10.22        21.70        68.45        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 
       55.40        29.19         9.01        47.87        35.34        30.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        26.07        24.10        22.78         1.22        23.64 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        16.96        43.10        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
        1.94        25.97        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  OR2T3 MUTATED OR2T3 WILD-TYPE 
           3.02            0.10 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
         173.79          141.34 
  OR2T3 MUTATED OR2T3 WILD-TYPE 
          18.84           17.42 
[1] "3.0 - 173.8 (18.8)" "0.1 - 141.3 (17.4)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"OR2T3 WILD-TYPE"   "OR2T3 MUTATED" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE"   "OR2T3 MUTATED" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
  "OR2T3 MUTATED" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" "OR2T3 WILD-TYPE" 
[1] "hr=" "2.9"
D120V2, continuous
D120V3, binary
                 cls
clus                0   1
  OR2T3 MUTATED     0   6
  OR2T3 WILD-TYPE  47 125
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T3 MUTATED      0    6
  OR2T3 WILD-TYPE   47  125
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  FEMALE             0              47
  MALE               6             125
D120V4, continuous
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  OR2T3 MUTATED                                       1
  OR2T3 WILD-TYPE                                     4
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  OR2T3 MUTATED                                        0
  OR2T3 WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  OR2T3 MUTATED                                                             5
  OR2T3 WILD-TYPE                                                         167
D120V5, multiclass
                                                             clus
vv                                                            OR2T3 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   1
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             5
                                                             clus
vv                                                            OR2T3 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             167
                 vv
clus               T1  T2  T3  T4
  OR2T3 MUTATED     1   4   0   1
  OR2T3 WILD-TYPE  35 112  14  11
D120V6, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  T1             1              35
  T2             4             112
  T3             0              14
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  OR2T3 MUTATED     6   0   0   0
  OR2T3 WILD-TYPE 111  39  17   5
D120V7, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  N0             6             111
  N1             0              39
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  OR2T3 MUTATED     6   0   0
  OR2T3 WILD-TYPE 159   3   6
D120V8, multiclass
    clus
vv   OR2T3 MUTATED OR2T3 WILD-TYPE
  M0             6             159
  M1             0               3
  MX             0               6
                 vv
clus               I II III+IV
  OR2T3 MUTATED    5  1      0
  OR2T3 WILD-TYPE 92 37     41
D120V9, multiclass
        clus
vv       OR2T3 MUTATED OR2T3 WILD-TYPE
  I                  5              92
  II                 1              37
  III+IV             0              41
D120V10, binary
                 cls
clus                0   1
  OR2T3 MUTATED     0   6
  OR2T3 WILD-TYPE   4 168
[1] "tbl2"
                 cls
clus              [,1] [,2]
  OR2T3 MUTATED      0    6
  OR2T3 WILD-TYPE    4  168
     clus
vv    OR2T3 MUTATED OR2T3 WILD-TYPE
  NO              0               4
  YES             6             168
D120V11, continuous
D120V12, continuous
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  OR2T3 MUTATED                                             4
  OR2T3 WILD-TYPE                                          90
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  OR2T3 MUTATED                                        1              1
  OR2T3 WILD-TYPE                                     42             27
                 vv
clus              LIFELONG NON-SMOKER
  OR2T3 MUTATED                     0
  OR2T3 WILD-TYPE                   8
D120V13, multiclass
                                             clus
vv                                            OR2T3 MUTATED OR2T3 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             4              90
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  1              42
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D120V14, continuous

Clustering(121) Variable = EIF3E MUTATION ANALYSIS
D121V1, survival
                 sevent
clus2              0  1
  EIF3E MUTATED    2  3
  EIF3E WILD-TYPE 95 67
  EIF3E MUTATED EIF3E WILD-TYPE 
              5             162 
  EIF3E MUTATED EIF3E WILD-TYPE 
              3              67 
$`EIF3E MUTATED`
TCGA-18-3410 TCGA-18-3417 TCGA-22-4599 TCGA-34-5239 TCGA-51-4079 
        4.80        24.92        38.17        10.82         0.39 

$`EIF3E WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       115.59        46.88 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 TCGA-21-5784 
       60.89        34.78        15.55         9.30        31.63        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       21.57        10.82         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 
       27.02        20.45        35.08        24.13        34.75        13.12 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
       19.30        11.77        31.69        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       44.22         0.79        71.34        11.74        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60        82.98       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
      173.79       103.53       141.34        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        0.39         2.07        28.93         0.10         2.04         1.02 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       10.22        21.70        68.45        49.48        55.40        29.19 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        47.87        35.34        30.61         3.16        26.07 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       24.10        22.78         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       43.10        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       10.06        54.08         4.01        49.05         0.36         0.79 

  EIF3E MUTATED EIF3E WILD-TYPE 
           0.39            0.10 
  EIF3E MUTATED EIF3E WILD-TYPE 
          38.17          173.79 
  EIF3E MUTATED EIF3E WILD-TYPE 
          10.82           17.98 
[1] "0.4 - 38.2 (10.8)"  "0.1 - 173.8 (18.0)"
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3408      TCGA-18-3409 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3410      TCGA-18-3411      TCGA-18-3412      TCGA-18-3414 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3415      TCGA-18-3416      TCGA-18-3417      TCGA-18-3419 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-18-3421      TCGA-18-4083      TCGA-18-4086      TCGA-18-4721 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-5592      TCGA-18-5595      TCGA-21-1070      TCGA-21-1071 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-1076      TCGA-21-1077      TCGA-21-1078      TCGA-21-1081 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5784      TCGA-21-5786      TCGA-21-5787 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-0944      TCGA-22-1002      TCGA-22-1011      TCGA-22-1012 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-1016      TCGA-22-4591      TCGA-22-4593      TCGA-22-4595 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4599      TCGA-22-4601      TCGA-22-4604      TCGA-22-4607 
  "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4613      TCGA-22-5471      TCGA-22-5472      TCGA-22-5473 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5477      TCGA-22-5478      TCGA-22-5480 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5482      TCGA-22-5485      TCGA-22-5489      TCGA-22-5491 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5492      TCGA-33-4532      TCGA-33-4533      TCGA-33-4538 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4547      TCGA-33-4566      TCGA-33-4582      TCGA-33-4583 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4586      TCGA-33-6737      TCGA-34-2596      TCGA-34-2600 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-2608      TCGA-34-5231      TCGA-34-5232      TCGA-34-5234 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5236      TCGA-34-5239      TCGA-34-5240      TCGA-34-5241 
"EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5927      TCGA-34-5928      TCGA-34-5929      TCGA-37-3783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-3789      TCGA-37-4133      TCGA-37-4135      TCGA-37-4141 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-5819      TCGA-39-5016      TCGA-39-5019      TCGA-39-5021 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5037      TCGA-39-5039      TCGA-43-2578 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-3394      TCGA-43-3920      TCGA-43-5668      TCGA-43-6143 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-6647      TCGA-43-6770      TCGA-43-6771      TCGA-46-3768 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4079      TCGA-51-4080 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE"   "EIF3E MUTATED" "EIF3E WILD-TYPE" 
     TCGA-51-4081      TCGA-56-1622      TCGA-56-5897      TCGA-56-6545 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2698      TCGA-60-2707      TCGA-60-2708 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2709      TCGA-60-2710      TCGA-60-2711      TCGA-60-2712 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2713      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-66-2727      TCGA-66-2734 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2742      TCGA-66-2744      TCGA-66-2754      TCGA-66-2755 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2756      TCGA-66-2757      TCGA-66-2758      TCGA-66-2759 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2763      TCGA-66-2765      TCGA-66-2766      TCGA-66-2767 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2768      TCGA-66-2770      TCGA-66-2771      TCGA-66-2773 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2777      TCGA-66-2778      TCGA-66-2780      TCGA-66-2781 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2782      TCGA-66-2783      TCGA-66-2785      TCGA-66-2786 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2787      TCGA-66-2788      TCGA-66-2789      TCGA-66-2791 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2792      TCGA-66-2793      TCGA-66-2794      TCGA-66-2795 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
[1] "hr=" "2.2"
D121V2, continuous
D121V3, binary
                 cls
clus                0   1
  EIF3E MUTATED     2   3
  EIF3E WILD-TYPE  45 128
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EIF3E MUTATED      2    3
  EIF3E WILD-TYPE   45  128
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  FEMALE             2              45
  MALE               3             128
D121V4, continuous
[1] "Remove cluster labels:" "EIF3E MUTATED"         
clus
  EIF3E MUTATED EIF3E WILD-TYPE 
              2              34 
     TCGA-18-3406      TCGA-18-3407      TCGA-18-3414      TCGA-18-3419 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5782      TCGA-21-5787      TCGA-22-4591      TCGA-22-4593 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4595      TCGA-22-4601      TCGA-22-4604      TCGA-22-4613 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5477 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5478      TCGA-22-5480      TCGA-22-5482      TCGA-22-5485 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5489      TCGA-22-5491      TCGA-22-5492      TCGA-34-5234 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-4133      TCGA-37-4135      TCGA-37-5819      TCGA-60-2698 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2725      TCGA-60-2726 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-70-6722      TCGA-70-6723 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
                 vv
clus              LUNG BASALOID SQUAMOUS CELL CARCINOMA
  EIF3E MUTATED                                       0
  EIF3E WILD-TYPE                                     5
                 vv
clus              LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  EIF3E MUTATED                                        0
  EIF3E WILD-TYPE                                      1
                 vv
clus              LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  EIF3E MUTATED                                                             5
  EIF3E WILD-TYPE                                                         167
D121V5, multiclass
                                                             clus
vv                                                            EIF3E MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                   0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                  0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             5
                                                             clus
vv                                                            EIF3E WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             167
                 vv
clus               T1  T2  T3  T4
  EIF3E MUTATED     0   3   1   1
  EIF3E WILD-TYPE  36 113  13  11
D121V6, multiclass
    clus
vv   EIF3E MUTATED EIF3E WILD-TYPE
  T1             0              36
  T2             3             113
  T3             1              13
  T4             1              11
                 vv
clus               N0  N1  N2  N3
  EIF3E MUTATED     4   1   0   0
  EIF3E WILD-TYPE 113  38  17   5
D121V7, multiclass
    clus
vv   EIF3E MUTATED EIF3E WILD-TYPE
  N0             4             113
  N1             1              38
  N2             0              17
  N3             0               5
                 vv
clus               M0  M1  MX
  EIF3E MUTATED     3   1   0
  EIF3E WILD-TYPE 162   2   6
D121V8, multiclass
    clus
vv   EIF3E MUTATED EIF3E WILD-TYPE
  M0             3             162
  M1             1               2
  MX             0               6
                 vv
clus               I II III+IV
  EIF3E MUTATED    2  0      3
  EIF3E WILD-TYPE 95 38     38
D121V9, multiclass
        clus
vv       EIF3E MUTATED EIF3E WILD-TYPE
  I                  2              95
  II                 0              38
  III+IV             3              38
D121V10, binary
                 cls
clus                0   1
  EIF3E MUTATED     0   5
  EIF3E WILD-TYPE   4 169
[1] "tbl2"
                 cls
clus              [,1] [,2]
  EIF3E MUTATED      0    5
  EIF3E WILD-TYPE    4  169
     clus
vv    EIF3E MUTATED EIF3E WILD-TYPE
  NO              0               4
  YES             5             169
D121V11, continuous
D121V12, continuous
[1] "Remove cluster labels:" "EIF3E MUTATED"         
clus
  EIF3E MUTATED EIF3E WILD-TYPE 
              2             125 
     TCGA-18-3407      TCGA-18-3408      TCGA-18-3409      TCGA-18-3412 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-3414      TCGA-18-3415      TCGA-18-3419      TCGA-18-3421 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-18-4086      TCGA-18-4721      TCGA-21-1070      TCGA-21-1076 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-1077      TCGA-21-1078      TCGA-21-1081      TCGA-21-5782 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5787      TCGA-22-1002      TCGA-22-1012      TCGA-22-1016 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4593      TCGA-22-4607      TCGA-22-4613      TCGA-22-5471 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5472      TCGA-22-5473      TCGA-22-5474      TCGA-22-5478 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5480      TCGA-22-5482      TCGA-22-5489      TCGA-22-5492 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4583      TCGA-33-4586 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-2596      TCGA-34-2600      TCGA-34-2608      TCGA-34-5234 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-34-5241      TCGA-34-5928      TCGA-34-5929      TCGA-37-4133 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5016      TCGA-39-5021 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5022      TCGA-39-5024      TCGA-39-5027      TCGA-39-5028 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5029      TCGA-39-5030      TCGA-39-5031      TCGA-39-5035 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5036      TCGA-39-5039      TCGA-43-2578      TCGA-43-3920 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-5668      TCGA-43-6143      TCGA-43-6647      TCGA-43-6771 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-46-6025      TCGA-46-6026      TCGA-51-4080      TCGA-56-1622 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-5897      TCGA-56-6545      TCGA-56-6546      TCGA-60-2698 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2707      TCGA-60-2708      TCGA-60-2710      TCGA-60-2711 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2712      TCGA-60-2715      TCGA-60-2719      TCGA-60-2720 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2721      TCGA-60-2722      TCGA-60-2723      TCGA-60-2724 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2725      TCGA-60-2726      TCGA-63-5128      TCGA-63-5131 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2785      TCGA-66-2786      TCGA-66-2787      TCGA-66-2788 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2789      TCGA-66-2791      TCGA-66-2792      TCGA-66-2793 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2794      TCGA-66-2795      TCGA-66-2800      TCGA-85-6560 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-85-6561 
"EIF3E WILD-TYPE" 
                 vv
clus              CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  EIF3E MUTATED                                             1
  EIF3E WILD-TYPE                                          93
                 vv
clus              CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  EIF3E MUTATED                                        2              1
  EIF3E WILD-TYPE                                     41             27
                 vv
clus              LIFELONG NON-SMOKER
  EIF3E MUTATED                     0
  EIF3E WILD-TYPE                   8
D121V13, multiclass
                                             clus
vv                                            EIF3E MUTATED EIF3E WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS             1              93
  CURRENT REFORMED SMOKER FOR > 15 YEARS                  2              41
  CURRENT SMOKER                                          1              27
  LIFELONG NON-SMOKER                                     0               8
D121V14, continuous
[1] "Remove cluster labels:" "EIF3E MUTATED"         
clus
  EIF3E MUTATED EIF3E WILD-TYPE 
              1             104 
     TCGA-18-3406      TCGA-21-1078      TCGA-21-5782      TCGA-21-5786 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-21-5787      TCGA-22-0944      TCGA-22-1002      TCGA-22-1011 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-1012      TCGA-22-1016      TCGA-22-4591      TCGA-22-4593 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-4607      TCGA-22-4613      TCGA-22-5472      TCGA-22-5473 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-22-5474      TCGA-22-5480      TCGA-22-5482      TCGA-22-5492 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4533      TCGA-33-4547      TCGA-33-4582      TCGA-33-4583 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-33-4586      TCGA-34-5240      TCGA-34-5241      TCGA-37-4133 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-37-4135      TCGA-37-5819      TCGA-39-5021      TCGA-39-5022 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5024      TCGA-39-5027      TCGA-39-5028      TCGA-39-5029 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5030      TCGA-39-5031      TCGA-39-5035      TCGA-39-5036 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-39-5037      TCGA-39-5039      TCGA-43-2578      TCGA-43-3394 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-3920      TCGA-43-6143      TCGA-43-6647      TCGA-43-6770 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-43-6771      TCGA-56-1622      TCGA-56-5898      TCGA-56-6545 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-56-6546      TCGA-60-2707      TCGA-60-2708      TCGA-60-2709 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2710      TCGA-60-2711      TCGA-60-2712      TCGA-60-2713 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2715      TCGA-60-2719      TCGA-60-2720      TCGA-60-2721 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-60-2723      TCGA-60-2724      TCGA-60-2725      TCGA-60-2726 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-63-6202      TCGA-66-2727      TCGA-66-2734      TCGA-66-2742 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2744      TCGA-66-2754      TCGA-66-2755      TCGA-66-2756 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2757      TCGA-66-2758      TCGA-66-2759      TCGA-66-2763 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2765      TCGA-66-2766      TCGA-66-2767      TCGA-66-2770 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2771      TCGA-66-2773      TCGA-66-2777      TCGA-66-2778 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2780      TCGA-66-2781      TCGA-66-2782      TCGA-66-2783 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2786      TCGA-66-2787      TCGA-66-2788      TCGA-66-2789 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2791      TCGA-66-2792      TCGA-66-2793      TCGA-66-2794 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 
     TCGA-66-2795      TCGA-66-2800      TCGA-85-6560      TCGA-85-6561 
"EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" "EIF3E WILD-TYPE" 

Clustering(122) Variable = PRR23B MUTATION ANALYSIS
D122V1, survival
                  sevent
clus2               0  1
  PRR23B MUTATED    6  2
  PRR23B WILD-TYPE 91 68
  PRR23B MUTATED PRR23B WILD-TYPE 
               8              159 
  PRR23B MUTATED PRR23B WILD-TYPE 
               2               68 
$`PRR23B MUTATED`
TCGA-21-5782 TCGA-33-4533 TCGA-33-4583 TCGA-39-5019 TCGA-60-2723 TCGA-66-2755 
       31.63       114.05       141.34        44.71        22.78         0.92 
TCGA-66-2763 TCGA-66-2782 
        0.99        12.00 

$`PRR23B WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 
      115.59        46.88        60.89        34.78        15.55         9.30 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5482 
       63.52        14.60        44.22         0.79        71.34        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 
       30.08        62.86        56.32        16.60        82.98        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 
       43.10       173.79       103.53        14.07        19.76         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       61.61        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        3.95         0.43         7.82         6.81         0.39         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64         0.79 
TCGA-39-5039 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 
       17.88        18.08        11.57        18.84         8.48         7.00 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.02         2.79         5.42         9.96         0.95         0.59 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        0.39         0.39         2.07        28.93         0.10         2.04 
TCGA-56-6546 TCGA-60-2698 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
        1.02        10.22        21.70        68.45        49.48        55.40 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       29.19         9.01        47.87        35.34        30.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       26.07        24.10         1.22        23.64        11.77        16.96 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       43.10        21.07         0.99         2.01         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-85-6560 TCGA-85-6561 
       49.05         0.36         0.79 

  PRR23B MUTATED PRR23B WILD-TYPE 
            0.92             0.10 
  PRR23B MUTATED PRR23B WILD-TYPE 
          141.34           173.79 
  PRR23B MUTATED PRR23B WILD-TYPE 
          27.205           16.960 
[1] "0.9 - 141.3 (27.2)" "0.1 - 173.8 (17.0)"
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3408       TCGA-18-3409 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3410       TCGA-18-3411       TCGA-18-3412       TCGA-18-3414 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3415       TCGA-18-3416       TCGA-18-3417       TCGA-18-3419 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3421       TCGA-18-4083       TCGA-18-4086       TCGA-18-4721 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-5592       TCGA-18-5595       TCGA-21-1070       TCGA-21-1071 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-1076       TCGA-21-1077       TCGA-21-1078       TCGA-21-1081 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-0944       TCGA-22-1002       TCGA-22-1011       TCGA-22-1012 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-1016       TCGA-22-4591       TCGA-22-4593       TCGA-22-4595 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4599       TCGA-22-4601       TCGA-22-4604       TCGA-22-4607 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5471       TCGA-22-5472       TCGA-22-5473 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5474       TCGA-22-5477       TCGA-22-5478       TCGA-22-5480 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5492       TCGA-33-4532       TCGA-33-4533       TCGA-33-4538 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-33-4547       TCGA-33-4566       TCGA-33-4582       TCGA-33-4583 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
      TCGA-33-4586       TCGA-33-6737       TCGA-34-2596       TCGA-34-2600 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-2608       TCGA-34-5231       TCGA-34-5232       TCGA-34-5234 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-5927       TCGA-34-5928       TCGA-34-5929       TCGA-37-3783 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-37-3789       TCGA-37-4133       TCGA-37-4135       TCGA-37-4141 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-37-5819       TCGA-39-5016       TCGA-39-5019       TCGA-39-5021 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-21-5782       TCGA-21-5784       TCGA-21-5786       TCGA-21-5787 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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      TCGA-22-5482       TCGA-22-5485       TCGA-22-5489       TCGA-22-5491 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
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      TCGA-46-6025       TCGA-46-6026       TCGA-51-4079       TCGA-51-4080 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" "PRR23B WILD-TYPE" 
      TCGA-60-2725       TCGA-60-2726       TCGA-66-2727       TCGA-66-2734 
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"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE"   "PRR23B MUTATED" 
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      TCGA-66-2763       TCGA-66-2765       TCGA-66-2766       TCGA-66-2767 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2768       TCGA-66-2770       TCGA-66-2771       TCGA-66-2773 
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      TCGA-66-2777       TCGA-66-2778       TCGA-66-2780       TCGA-66-2781 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2782       TCGA-66-2783       TCGA-66-2785       TCGA-66-2786 
  "PRR23B MUTATED" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2787       TCGA-66-2788       TCGA-66-2789       TCGA-66-2791 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2792       TCGA-66-2793       TCGA-66-2794       TCGA-66-2795 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-66-2800       TCGA-85-6560       TCGA-85-6561 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
[1] "hr=" "2.8"
D122V2, continuous
D122V3, binary
                  cls
clus                 0   1
  PRR23B MUTATED     4   5
  PRR23B WILD-TYPE  43 126
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PRR23B MUTATED      4    5
  PRR23B WILD-TYPE   43  126
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  FEMALE              4               43
  MALE                5              126
D122V4, continuous
[1] "Remove cluster labels:" "PRR23B MUTATED"        
clus
  PRR23B MUTATED PRR23B WILD-TYPE 
               1               35 
      TCGA-18-3406       TCGA-18-3407       TCGA-18-3410       TCGA-18-3414 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-18-3419       TCGA-21-5787       TCGA-22-4591       TCGA-22-4593 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4595       TCGA-22-4599       TCGA-22-4601       TCGA-22-4604 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-4613       TCGA-22-5472       TCGA-22-5473       TCGA-22-5474 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5477       TCGA-22-5478       TCGA-22-5480       TCGA-22-5482 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-22-5485       TCGA-22-5489       TCGA-22-5491       TCGA-22-5492 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-34-5234       TCGA-37-4133       TCGA-37-4135       TCGA-37-5819 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2698       TCGA-60-2712       TCGA-60-2715       TCGA-60-2725 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
      TCGA-60-2726       TCGA-70-6722       TCGA-70-6723 
"PRR23B WILD-TYPE" "PRR23B WILD-TYPE" "PRR23B WILD-TYPE" 
                  vv
clus               LUNG BASALOID SQUAMOUS CELL CARCINOMA
  PRR23B MUTATED                                       0
  PRR23B WILD-TYPE                                     5
                  vv
clus               LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  PRR23B MUTATED                                        0
  PRR23B WILD-TYPE                                      1
                  vv
clus               LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  PRR23B MUTATED                                                             9
  PRR23B WILD-TYPE                                                         163
D122V5, multiclass
                                                             clus
vv                                                            PRR23B MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    0
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              9
                                                             clus
vv                                                            PRR23B WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              163
                  vv
clus                T1  T2  T3  T4
  PRR23B MUTATED     1   6   1   1
  PRR23B WILD-TYPE  35 110  13  11
D122V6, multiclass
    clus
vv   PRR23B MUTATED PRR23B WILD-TYPE
  T1              1               35
  T2              6              110
  T3              1               13
  T4              1               11
                  vv
clus                N0  N1  N2  N3
  PRR23B MUTATED     9   0   0   0
  PRR23B WILD-TYPE 108  39  17   5
D122V7, multiclass
    clus
vv   PRR23B MUTATED PRR23B WILD-TYPE
  N0              9              108
  N1              0               39
  N2              0               17
  N3              0                5
                  vv
clus                M0  M1  MX
  PRR23B MUTATED     9   0   0
  PRR23B WILD-TYPE 156   3   6
D122V8, multiclass
    clus
vv   PRR23B MUTATED PRR23B WILD-TYPE
  M0              9              156
  M1              0                3
  MX              0                6
                  vv
clus                I II III+IV
  PRR23B MUTATED    7  2      0
  PRR23B WILD-TYPE 90 36     41
D122V9, multiclass
        clus
vv       PRR23B MUTATED PRR23B WILD-TYPE
  I                   7               90
  II                  2               36
  III+IV              0               41
D122V10, binary
                  cls
clus                 0   1
  PRR23B MUTATED     0   9
  PRR23B WILD-TYPE   4 165
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PRR23B MUTATED      0    9
  PRR23B WILD-TYPE    4  165
     clus
vv    PRR23B MUTATED PRR23B WILD-TYPE
  NO               0                4
  YES              9              165
D122V11, continuous
D122V12, continuous
                  vv
clus               CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  PRR23B MUTATED                                             7
  PRR23B WILD-TYPE                                          87
                  vv
clus               CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  PRR23B MUTATED                                        2              0
  PRR23B WILD-TYPE                                     41             28
                  vv
clus               LIFELONG NON-SMOKER
  PRR23B MUTATED                     0
  PRR23B WILD-TYPE                   8
D122V13, multiclass
                                             clus
vv                                            PRR23B MUTATED PRR23B WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS              7               87
  CURRENT REFORMED SMOKER FOR > 15 YEARS                   2               41
  CURRENT SMOKER                                           0               28
  LIFELONG NON-SMOKER                                      0                8
D122V14, continuous

Clustering(123) Variable = RTN1 MUTATION ANALYSIS
D123V1, survival
                sevent
clus2             0  1
  RTN1 MUTATED    6  4
  RTN1 WILD-TYPE 91 66
  RTN1 MUTATED RTN1 WILD-TYPE 
            10            157 
  RTN1 MUTATED RTN1 WILD-TYPE 
             4             66 
$`RTN1 MUTATED`
TCGA-18-3409 TCGA-22-5482 TCGA-33-4566 TCGA-33-4583 TCGA-39-5019 TCGA-43-6143 
       79.46        11.74       173.79       141.34        44.71         7.00 
TCGA-43-6647 TCGA-60-2698 TCGA-66-2754 TCGA-66-2789 
        6.02        10.22         2.01         4.04 

$`RTN1 WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       115.59 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-5782 
       46.88        60.89        34.78        15.55         9.30        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 
       29.85        21.57        10.82         7.33         4.31         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 
       14.10        27.02        20.45        35.08        24.13        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       34.75        13.12        19.30        11.77        31.69        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5485 
       63.52        14.60        44.22         0.79        71.34        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60        82.98       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 
       43.10       103.53        14.07        19.76         2.63        61.61 
TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 
        7.73        14.07        22.95         5.52         4.96         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        15.58        35.64         0.79        17.88 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6770 TCGA-43-6771 
       18.08        11.57        18.84         8.48         2.79         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96         0.95         0.59         0.39         0.39         2.07 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-60-2707 TCGA-60-2708 
       28.93         0.10         2.04         1.02        21.70        68.45 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 
       49.48        55.40        29.19         9.01        47.87        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       30.61         3.16        26.07        24.10        22.78         1.22 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 
       23.64        11.77        16.96        43.10        21.07         0.99 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 
       24.95         1.94        25.97        40.01        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-85-6560 
       30.02        10.06        54.08         4.01        49.05         0.36 
TCGA-85-6561 
        0.79 

  RTN1 MUTATED RTN1 WILD-TYPE 
          2.01           0.10 
  RTN1 MUTATED RTN1 WILD-TYPE 
        173.79         115.59 
  RTN1 MUTATED RTN1 WILD-TYPE 
         10.98          18.08 
[1] "2.0 - 173.8 (11.0)" "0.1 - 115.6 (18.1)"
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3408     TCGA-18-3409 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-18-3410     TCGA-18-3411     TCGA-18-3412     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3415     TCGA-18-3416     TCGA-18-3417     TCGA-18-3419 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3421     TCGA-18-4083     TCGA-18-4086     TCGA-18-4721 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-5592     TCGA-18-5595     TCGA-21-1070     TCGA-21-1071 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-1076     TCGA-21-1077     TCGA-21-1078     TCGA-21-1081 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-21-5782     TCGA-21-5784     TCGA-21-5786     TCGA-21-5787 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-0944     TCGA-22-1002     TCGA-22-1011     TCGA-22-1012 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-1016     TCGA-22-4591     TCGA-22-4593     TCGA-22-4595 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4599     TCGA-22-4601     TCGA-22-4604     TCGA-22-4607 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4613     TCGA-22-5471     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5482     TCGA-22-5485     TCGA-22-5489     TCGA-22-5491 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5492     TCGA-33-4532     TCGA-33-4533     TCGA-33-4538 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-33-4547     TCGA-33-4566     TCGA-33-4582     TCGA-33-4583 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-33-4586     TCGA-33-6737     TCGA-34-2596     TCGA-34-2600 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-2608     TCGA-34-5231     TCGA-34-5232     TCGA-34-5234 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5236     TCGA-34-5239     TCGA-34-5240     TCGA-34-5241 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5927     TCGA-34-5928     TCGA-34-5929     TCGA-37-3783 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-3789     TCGA-37-4133     TCGA-37-4135     TCGA-37-4141 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-37-5819     TCGA-39-5016     TCGA-39-5019     TCGA-39-5021 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-39-5022     TCGA-39-5024     TCGA-39-5027     TCGA-39-5028 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5029     TCGA-39-5030     TCGA-39-5031     TCGA-39-5035 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-39-5036     TCGA-39-5037     TCGA-39-5039     TCGA-43-2578 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-43-3394     TCGA-43-3920     TCGA-43-5668     TCGA-43-6143 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" 
    TCGA-43-6647     TCGA-43-6770     TCGA-43-6771     TCGA-46-3768 
  "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-46-6025     TCGA-46-6026     TCGA-51-4079     TCGA-51-4080 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-51-4081     TCGA-56-1622     TCGA-56-5897     TCGA-56-6545 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-56-6546     TCGA-60-2698     TCGA-60-2707     TCGA-60-2708 
"RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2709     TCGA-60-2710     TCGA-60-2711     TCGA-60-2712 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2713     TCGA-60-2715     TCGA-60-2719     TCGA-60-2720 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2721     TCGA-60-2722     TCGA-60-2723     TCGA-60-2724 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2725     TCGA-60-2726     TCGA-66-2727     TCGA-66-2734 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2742     TCGA-66-2744     TCGA-66-2754     TCGA-66-2755 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2756     TCGA-66-2757     TCGA-66-2758     TCGA-66-2759 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2763     TCGA-66-2765     TCGA-66-2766     TCGA-66-2767 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2768     TCGA-66-2770     TCGA-66-2771     TCGA-66-2773 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2777     TCGA-66-2778     TCGA-66-2780     TCGA-66-2781 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2782     TCGA-66-2783     TCGA-66-2785     TCGA-66-2786 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2787     TCGA-66-2788     TCGA-66-2789     TCGA-66-2791 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE"   "RTN1 MUTATED" "RTN1 WILD-TYPE" 
    TCGA-66-2792     TCGA-66-2793     TCGA-66-2794     TCGA-66-2795 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-66-2800     TCGA-85-6560     TCGA-85-6561 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
[1] "hr=" "2.1"
D123V2, continuous
D123V3, binary
                cls
clus               0   1
  RTN1 MUTATED     1  11
  RTN1 WILD-TYPE  46 120
[1] "tbl2"
                cls
clus             [,1] [,2]
  RTN1 MUTATED      1   11
  RTN1 WILD-TYPE   46  120
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  FEMALE            1             46
  MALE             11            120
D123V4, continuous
[1] "Remove cluster labels:" "RTN1 MUTATED"          
clus
  RTN1 MUTATED RTN1 WILD-TYPE 
             2             34 
    TCGA-18-3406     TCGA-18-3407     TCGA-18-3410     TCGA-18-3414 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-18-3419     TCGA-21-5782     TCGA-21-5787     TCGA-22-4591 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4593     TCGA-22-4595     TCGA-22-4599     TCGA-22-4601 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-4604     TCGA-22-4613     TCGA-22-5472     TCGA-22-5473 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5474     TCGA-22-5477     TCGA-22-5478     TCGA-22-5480 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-22-5485     TCGA-22-5489     TCGA-22-5491     TCGA-22-5492 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-34-5234     TCGA-37-4133     TCGA-37-4135     TCGA-37-5819 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-60-2712     TCGA-60-2715     TCGA-60-2725     TCGA-60-2726 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
    TCGA-70-6722     TCGA-70-6723 
"RTN1 WILD-TYPE" "RTN1 WILD-TYPE" 
                vv
clus             LUNG BASALOID SQUAMOUS CELL CARCINOMA
  RTN1 MUTATED                                       2
  RTN1 WILD-TYPE                                     3
                vv
clus             LUNG PAPILLARY SQUAMOUS CELL CARCINOMA
  RTN1 MUTATED                                        0
  RTN1 WILD-TYPE                                      1
                vv
clus             LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  RTN1 MUTATED                                                            10
  RTN1 WILD-TYPE                                                         162
D123V5, multiclass
                                                             clus
vv                                                            RTN1 MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                  2
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                 0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)           10
                                                             clus
vv                                                            RTN1 WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    3
  LUNG PAPILLARY SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)            162
                vv
clus              T1  T2  T3  T4
  RTN1 MUTATED     3   8   0   1
  RTN1 WILD-TYPE  33 108  14  11
D123V6, multiclass
    clus
vv   RTN1 MUTATED RTN1 WILD-TYPE
  T1            3             33
  T2            8            108
  T3            0             14
  T4            1             11
                vv
clus              N0  N1  N2  N3
  RTN1 MUTATED     8   2   1   1
  RTN1 WILD-TYPE 109  37  16   4
D123V7, multiclass
    clus
vv   RTN1 MUTATED RTN1 WILD-TYPE
  N0            8            109
  N1            2             37
  N2            1             16
  N3            1              4
                vv
clus              M0  M1  MX
  RTN1 MUTATED    11   0   1
  RTN1 WILD-TYPE 154   3   5
D123V8, multiclass
    clus
vv   RTN1 MUTATED RTN1 WILD-TYPE
  M0           11            154
  M1            0              3
  MX            1              5
                vv
clus              I II III+IV
  RTN1 MUTATED    5  4      2
  RTN1 WILD-TYPE 92 34     39
D123V9, multiclass
        clus
vv       RTN1 MUTATED RTN1 WILD-TYPE
  I                 5             92
  II                4             34
  III+IV            2             39
D123V10, binary
                cls
clus               0   1
  RTN1 MUTATED     0  12
  RTN1 WILD-TYPE   4 162
[1] "tbl2"
                cls
clus             [,1] [,2]
  RTN1 MUTATED      0   12
  RTN1 WILD-TYPE    4  162
     clus
vv    RTN1 MUTATED RTN1 WILD-TYPE
  NO             0              4
  YES           12            162
D123V11, continuous
D123V12, continuous
                vv
clus             CURRENT REFORMED SMOKER FOR < OR = 15 YEARS
  RTN1 MUTATED                                             9
  RTN1 WILD-TYPE                                          85
                vv
clus             CURRENT REFORMED SMOKER FOR > 15 YEARS CURRENT SMOKER
  RTN1 MUTATED                                        2              1
  RTN1 WILD-TYPE                                     41             27
                vv
clus             LIFELONG NON-SMOKER
  RTN1 MUTATED                     0
  RTN1 WILD-TYPE                   8
D123V13, multiclass
                                             clus
vv                                            RTN1 MUTATED RTN1 WILD-TYPE
  CURRENT REFORMED SMOKER FOR < OR = 15 YEARS            9             85
  CURRENT REFORMED SMOKER FOR > 15 YEARS                 2             41
  CURRENT SMOKER                                         1             27
  LIFELONG NON-SMOKER                                    0              8
D123V14, continuous
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                 "NUMBERPACKYEARSSMOKED" 
                                     V12 
                    "STOPPEDSMOKINGYEAR" 
                                     V13 
        "TOBACCOSMOKINGHISTORYINDICATOR" 
                                     V14 
             "YEAROFTOBACCOSMOKINGONSET" 
> q(save="no")
