		Molecular subtypes	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p34.3)	277 (50%)	282	0.17883	1	0.84028	1	0.14802	1	0.13377	1	1.1809e-06	0.000944	0.11939	1	0.14921	1	0.84596	1	0.45534	1	0.3865	1	0.028555	1	0.42288	1
Amp Peak  2(1q21.3)	350 (63%)	209	0.21118	1	0.062143	1	0.68689	1	0.14998	1	7.1799e-12	5.96e-09	4.8135e-05	0.0376	0.048284	1	0.05405	1	0.65775	1	0.12593	1	0.90707	1	0.85951	1
Amp Peak  3(1q42.2)	304 (54%)	255	0.023027	1	0.03246	1	0.94062	1	0.0062983	1	3.1523e-10	2.59e-07	9.5376e-05	0.0735	0.10217	1	0.11033	1	0.42563	1	0.61988	1	0.17692	1	0.43876	1
Amp Peak  4(2p23.2)	235 (42%)	324	0.34143	1	0.026299	1	0.58209	1	0.013476	1	2.6678e-08	2.16e-05	0.0027869	1	0.31534	1	0.46341	1	0.085481	1	0.33306	1	0.93915	1	0.6106	1
Amp Peak  5(2q31.2)	245 (44%)	314	0.07789	1	0.0022168	1	0.0744	1	0.051974	1	9.1773e-10	7.52e-07	0.0003824	0.289	0.060436	1	0.77556	1	0.18371	1	0.13569	1	0.5224	1	0.34646	1
Amp Peak  6(3q26.2)	465 (83%)	94	0.0067889	1	0.0010126	0.756	0.98924	1	0.45398	1	1.0218e-08	8.31e-06	0.10771	1	0.96898	1	0.11454	1	0.043517	1	0.13329	1	0.16312	1	0.30205	1
Amp Peak  7(4p16.3)	152 (27%)	407	0.95456	1	0.033828	1	0.051823	1	0.69357	1	0.001227	0.913	0.0070541	1	0.33528	1	0.88794	1	0.34829	1	0.35	1	0.4445	1	0.17895	1
Amp Peak  8(4q13.3)	105 (19%)	454	0.91362	1	0.1332	1	0.35395	1	0.17499	1	1.5906e-05	0.0125	0.12502	1	0.56729	1	0.11522	1	0.45934	1	0.71747	1	0.8036	1	0.94778	1
Amp Peak  9(5p15.33)	295 (53%)	264	0.88378	1	0.48496	1	0.62525	1	0.54024	1	4.2186e-07	0.000338	0.34144	1	0.58135	1	0.37616	1	0.16209	1	0.60789	1	0.0067239	1	0.42511	1
Amp Peak 10(6p22.3)	287 (51%)	272	0.13202	1	0.015423	1	0.24948	1	0.15576	1	1.6727e-07	0.000134	0.032743	1	0.024879	1	0.01422	1	0.79322	1	0.66186	1	0.17598	1	0.7397	1
Amp Peak 11(7q36.3)	300 (54%)	259	0.043933	1	0.51492	1	0.26209	1	0.58806	1	1.6514e-06	0.00132	0.21142	1	0.16401	1	0.52832	1	0.98721	1	1	1	0.10315	1	0.3253	1
Amp Peak 12(8p11.21)	196 (35%)	363	0.10526	1	0.0024233	1	0.10195	1	0.29233	1	2.1115e-05	0.0166	0.012167	1	0.13094	1	0.59836	1	0.27074	1	0.105	1	0.84438	1	0.38547	1
Amp Peak 13(8q24.21)	439 (79%)	120	1.0471e-07	8.43e-05	1.2397e-05	0.00981	0.2293	1	0.0031325	1	2.873e-19	2.41e-16	0.0047011	1	0.91751	1	0.63109	1	1.6227e-06	0.00129	0.0014638	1	0.2039	1	0.02687	1
Amp Peak 14(10p15.3)	239 (43%)	320	0.75815	1	0.092025	1	0.069816	1	0.25513	1	4.4375e-11	3.67e-08	0.00010309	0.0794	0.36792	1	0.31567	1	0.28495	1	0.37844	1	0.67055	1	0.47493	1
Amp Peak 15(10q22.3)	175 (31%)	384	0.44257	1	0.32654	1	0.60684	1	0.060093	1	0.22734	1	0.9726	1	0.70421	1	0.95495	1	0.21881	1	0.40271	1	0.093393	1	0.57628	1
Amp Peak 16(11q14.1)	247 (44%)	312	0.0068158	1	0.090352	1	0.84677	1	0.29353	1	9.5815e-09	7.8e-06	0.020967	1	0.31884	1	0.12507	1	0.013032	1	0.064389	1	0.12545	1	0.96762	1
Amp Peak 17(12p13.33)	311 (56%)	248	0.036073	1	0.0032609	1	0.28986	1	0.010819	1	1.0993e-09	8.99e-07	1.3556e-05	0.0107	0.14787	1	0.28786	1	0.0097741	1	0.054033	1	0.52258	1	0.61245	1
Amp Peak 18(12p12.1)	294 (53%)	265	0.27314	1	0.013039	1	0.84309	1	0.096781	1	2.0528e-12	1.71e-09	1.0132e-06	0.000812	0.76615	1	0.038609	1	0.026748	1	0.09348	1	0.17658	1	0.13264	1
Amp Peak 19(14q11.2)	142 (25%)	417	0.0047811	1	0.07648	1	0.32258	1	0.0014517	1	0.090861	1	0.14013	1	0.22852	1	0.16947	1	0.42152	1	0.15915	1	0.30533	1	0.30959	1
Amp Peak 20(15q26.3)	156 (28%)	403	0.078572	1	0.95488	1	0.50348	1	0.68926	1	5.9213e-10	4.86e-07	0.64558	1	0.85069	1	0.080269	1	0.23279	1	0.67301	1	0.096735	1	0.17294	1
Amp Peak 21(17q25.3)	205 (37%)	354	0.45333	1	0.26106	1	0.91254	1	0.12259	1	0.016173	1	0.9438	1	0.21377	1	0.21144	1	0.021592	1	0.042666	1	0.50802	1	0.14793	1
Amp Peak 22(18q11.2)	137 (25%)	422	0.95152	1	0.19753	1	0.9758	1	0.52659	1	2.899e-06	0.0023	0.00045648	0.345	0.10894	1	0.34078	1	0.10347	1	0.022647	1	0.28201	1	0.39727	1
Amp Peak 23(19p13.12)	301 (54%)	258	0.00062354	0.468	0.00046285	0.349	0.046053	1	0.052014	1	1.967e-14	1.64e-11	3.8838e-06	0.00308	4.8249e-05	0.0376	0.00019304	0.148	0.18376	1	0.16158	1	0.58692	1	0.7614	1
Amp Peak 24(19q12)	309 (55%)	250	0.073562	1	0.023539	1	0.040171	1	0.1472	1	2.8902e-26	2.43e-23	3.6277e-10	2.98e-07	0.057425	1	0.77122	1	0.40918	1	0.39057	1	0.3615	1	0.78408	1
Amp Peak 25(19q13.2)	235 (42%)	324	0.95676	1	0.042548	1	0.65425	1	0.30736	1	6.2464e-10	5.12e-07	0.00020065	0.153	0.60909	1	0.37625	1	0.47295	1	0.77356	1	0.97689	1	0.61093	1
Amp Peak 26(20p13)	300 (54%)	259	0.18627	1	0.00012619	0.0967	0.2013	1	0.014109	1	9.8044e-12	8.13e-09	2.2341e-09	1.83e-06	0.56852	1	0.44811	1	0.031662	1	0.078514	1	0.24791	1	0.84481	1
Amp Peak 27(20q11.21)	326 (58%)	233	0.0055287	1	3.6807e-08	2.97e-05	0.1845	1	0.00010511	0.0808	1.0135e-22	8.5e-20	8.1023e-13	6.74e-10	0.17971	1	0.02458	1	0.00032926	0.25	0.045827	1	0.551	1	0.89674	1
Amp Peak 28(20q13.33)	387 (69%)	172	0.0076074	1	3.7542e-05	0.0294	0.59895	1	0.0032562	1	1.2127e-15	1.01e-12	2.8013e-08	2.26e-05	0.62026	1	0.3469	1	0.024665	1	0.070152	1	0.43222	1	0.41578	1
Amp Peak 29(22q12.2)	88 (16%)	471	0.60209	1	0.73875	1	0.083599	1	0.35916	1	8.03e-05	0.0622	0.0018661	1	0.98321	1	0.10844	1	0.27546	1	0.28941	1	0.083857	1	0.01662	1
Amp Peak 30(Xp11.23)	162 (29%)	397	0.75882	1	0.25697	1	0.29798	1	0.30833	1	3.2694e-06	0.0026	1.4555e-05	0.0115	0.80801	1	0.10553	1	0.33982	1	0.40157	1	0.20471	1	0.020274	1
Amp Peak 31(Xq28)	222 (40%)	337	0.24105	1	0.3924	1	0.83206	1	0.11732	1	2.4258e-05	0.019	0.15043	1	0.52067	1	0.42479	1	0.47596	1	0.62142	1	0.79946	1	0.56859	1
Del Peak  1(1p36.11)	264 (47%)	295	0.95178	1	0.80401	1	0.038525	1	0.32565	1	5.7575e-05	0.0448	0.18157	1	0.18944	1	0.48613	1	0.93643	1	0.80961	1	0.32365	1	0.068112	1
Del Peak  2(1q32.3)	92 (16%)	467	0.084751	1	0.51752	1	0.47661	1	0.11027	1	6.5623e-09	5.35e-06	0.28381	1	0.98179	1	0.10356	1	0.24414	1	0.37157	1	0.84785	1	0.87739	1
Del Peak  3(2p25.3)	117 (21%)	442	0.97269	1	0.98153	1	0.45398	1	0.48882	1	0.30557	1	0.58743	1	0.051565	1	0.10872	1	0.26923	1	0.79883	1	0.91374	1	1	1
Del Peak  4(2q22.1)	132 (24%)	427	0.072165	1	0.12952	1	0.86688	1	0.15013	1	0.05264	1	0.25098	1	0.36756	1	0.69695	1	0.72345	1	0.23526	1	0.61837	1	0.10568	1
Del Peak  5(2q37.3)	172 (31%)	387	0.010324	1	0.0015771	1	0.7156	1	0.0014625	1	3.0464e-05	0.0239	0.042777	1	0.56161	1	0.66698	1	0.027595	1	0.029587	1	0.0045723	1	0.010639	1
Del Peak  6(3p26.2)	206 (37%)	353	0.083027	1	6.134e-05	0.0477	0.0041237	1	0.022196	1	9.3086e-05	0.0719	5.5114e-05	0.0429	0.72805	1	0.23789	1	0.0013834	1	0.010905	1	0.57923	1	0.79569	1
Del Peak  7(4q22.1)	373 (67%)	186	0.028347	1	0.32774	1	0.92746	1	0.0096555	1	0.027855	1	0.52071	1	0.017231	1	0.05815	1	0.13118	1	0.42009	1	0.079722	1	0.069677	1
Del Peak  8(4q34.3)	404 (72%)	155	0.016511	1	0.13503	1	0.022166	1	0.013417	1	0.18273	1	0.47473	1	0.5918	1	0.29633	1	0.031255	1	0.091131	1	0.37034	1	0.241	1
Del Peak  9(5q11.2)	335 (60%)	224	0.69371	1	0.14363	1	0.42478	1	0.20625	1	2.7368e-08	2.21e-05	0.00079086	0.592	0.89687	1	0.88069	1	0.20851	1	0.42358	1	0.032829	1	0.01451	1
Del Peak 10(5q13.2)	398 (71%)	161	0.70233	1	0.73831	1	0.8876	1	0.80891	1	7.506e-13	6.25e-10	0.060134	1	0.95561	1	0.82143	1	0.40669	1	0.13542	1	0.13443	1	0.031988	1
Del Peak 11(6q27)	362 (65%)	197	0.50908	1	0.022867	1	0.21601	1	0.065085	1	7.9969e-09	6.52e-06	1.6242e-05	0.0128	0.84855	1	0.74811	1	0.00052207	0.393	0.055577	1	0.59812	1	0.07502	1
Del Peak 12(7p22.1)	243 (43%)	316	0.56881	1	0.022446	1	0.67779	1	0.65962	1	2.9162e-14	2.43e-11	0.85357	1	0.75611	1	0.74387	1	0.37019	1	0.11532	1	0.788	1	0.90413	1
Del Peak 13(8p23.3)	375 (67%)	184	0.057085	1	0.0084541	1	0.62934	1	0.018522	1	1.1014e-10	9.09e-08	0.056708	1	0.83106	1	0.66524	1	0.92467	1	0.41696	1	0.30929	1	0.1737	1
Del Peak 14(8p21.2)	392 (70%)	167	0.038822	1	0.014637	1	0.23329	1	0.0095627	1	1.0457e-08	8.49e-06	0.37012	1	0.43231	1	0.97814	1	0.32092	1	0.61545	1	0.83988	1	1	1
Del Peak 15(9p24.3)	247 (44%)	312	0.00011684	0.0896	0.080346	1	0.77196	1	0.0091386	1	0.011947	1	0.00036073	0.273	0.73202	1	0.33782	1	0.062855	1	0.39203	1	0.063791	1	0.023223	1
Del Peak 16(9q21.11)	268 (48%)	291	0.010669	1	0.0013553	1	0.13885	1	0.0011201	0.836	4.1649e-15	3.48e-12	3.9843e-07	0.00032	0.073736	1	0.79041	1	0.0013486	1	0.56791	1	0.073999	1	0.50666	1
Del Peak 17(9q34.13)	330 (59%)	229	0.019322	1	0.014445	1	1	1	0.018812	1	1.1547e-08	9.36e-06	0.0098361	1	0.44805	1	0.27697	1	0.22924	1	0.2844	1	0.057751	1	0.15522	1
Del Peak 18(10p15.3)	118 (21%)	441	0.13813	1	0.04065	1	0.096768	1	0.086514	1	0.099449	1	0.4118	1	0.37154	1	0.077853	1	0.083416	1	0.014913	1	0.26709	1	0.11763	1
Del Peak 19(10q23.31)	215 (38%)	344	0.23833	1	0.9805	1	0.00055605	0.418	0.012485	1	0.0019018	1	0.0011542	0.86	0.19696	1	0.015503	1	0.86506	1	0.10267	1	0.04052	1	0.3509	1
Del Peak 20(10q26.3)	186 (33%)	373	0.0084121	1	0.055327	1	0.2502	1	0.40473	1	8.8162e-05	0.0682	0.10397	1	0.3171	1	0.011299	1	0.063593	1	0.055024	1	0.0060687	1	0.094015	1
Del Peak 21(11p15.5)	334 (60%)	225	0.049854	1	0.30594	1	0.72854	1	0.047678	1	2.9062e-11	2.4e-08	0.016728	1	0.91618	1	0.79238	1	0.90025	1	0.33429	1	0.076313	1	0.0097685	1
Del Peak 22(11q25)	193 (35%)	366	0.80951	1	0.21082	1	0.17489	1	0.38042	1	0.14061	1	0.48254	1	0.46754	1	0.55967	1	0.63496	1	0.36655	1	0.73189	1	0.19935	1
Del Peak 23(12q23.1)	193 (35%)	366	0.0031959	1	0.0002042	0.156	0.04086	1	0.017405	1	4.405e-08	3.55e-05	0.02605	1	0.60267	1	0.51755	1	0.0912	1	0.016638	1	0.13228	1	0.022074	1
Del Peak 24(12q24.33)	213 (38%)	346	0.0019529	1	2.6295e-06	0.00209	0.21571	1	0.089147	1	1.1383e-11	9.42e-09	0.05049	1	0.29865	1	0.21385	1	0.20788	1	0.018943	1	0.017468	1	0.016207	1
Del Peak 25(13q14.2)	348 (62%)	211	0.025916	1	0.51566	1	0.72294	1	0.68348	1	1.1063e-06	0.000885	9.8046e-06	0.00777	0.00030126	0.229	0.0081291	1	0.030854	1	0.24683	1	0.22092	1	1	1
Del Peak 26(14q23.2)	292 (52%)	267	0.10862	1	0.59964	1	0.82297	1	0.80205	1	0.0022674	1	0.3812	1	0.20188	1	0.49909	1	0.89063	1	0.13322	1	0.48285	1	0.42348	1
Del Peak 27(15q15.1)	351 (63%)	208	0.042262	1	0.00046877	0.353	0.011088	1	0.0062633	1	1.7453e-10	1.44e-07	7.6355e-05	0.0593	0.026518	1	0.16153	1	0.021908	1	0.073568	1	0.24577	1	0.40657	1
Del Peak 28(16p13.3)	297 (53%)	262	0.54218	1	0.077289	1	0.16686	1	0.46168	1	0.085605	1	0.68494	1	0.64517	1	0.086204	1	0.7722	1	0.63371	1	0.14836	1	0.63626	1
Del Peak 29(16q22.1)	441 (79%)	118	0.3634	1	0.31888	1	0.030269	1	0.92458	1	9.0353e-05	0.0698	0.45447	1	0.48229	1	0.306	1	0.52777	1	0.079238	1	0.50536	1	0.18821	1
Del Peak 30(16q23.1)	434 (78%)	125	0.10968	1	0.10456	1	0.14294	1	0.32006	1	3.9296e-05	0.0307	0.49024	1	0.43391	1	0.39729	1	0.56266	1	0.23117	1	0.10103	1	0.026491	1
Del Peak 31(17p12)	472 (84%)	87	0.32182	1	0.7194	1	0.61934	1	0.59075	1	0.69734	1	0.33236	1	0.96736	1	0.35471	1	0.20547	1	0.5557	1	0.49053	1	0.23716	1
Del Peak 32(17q11.2)	456 (82%)	103	0.94995	1	0.062677	1	0.73465	1	0.47727	1	0.00019549	0.149	0.00073257	0.549	0.67119	1	0.10321	1	0.70486	1	0.31469	1	0.077026	1	0.29439	1
Del Peak 33(18q23)	364 (65%)	195	0.66643	1	0.82042	1	0.5659	1	0.37894	1	0.0021956	1	0.67348	1	0.46513	1	0.78593	1	0.13852	1	0.10373	1	0.63741	1	0.33609	1
Del Peak 34(19p13.3)	492 (88%)	67	0.25694	1	0.0039941	1	0.9433	1	0.46179	1	0.0096049	1	0.022781	1	0.61868	1	0.17914	1	0.31387	1	0.0018742	1	0.40304	1	0.27973	1
Del Peak 35(19q13.33)	290 (52%)	269	0.00067455	0.506	0.010053	1	0.063421	1	0.13786	1	0.036249	1	0.0016483	1	0.15608	1	0.054754	1	0.0045004	1	0.031615	1	0.40818	1	0.45404	1
Del Peak 36(19q13.43)	277 (50%)	282	0.01989	1	0.061156	1	0.060321	1	0.16438	1	0.00029766	0.227	0.00010695	0.0821	0.1703	1	0.32814	1	0.51678	1	0.18171	1	0.47231	1	0.17955	1
Del Peak 37(21q22.3)	218 (39%)	341	0.23458	1	0.35875	1	0.70456	1	0.24109	1	0.85544	1	0.30639	1	0.85846	1	0.9007	1	0.1397	1	0.23259	1	0.45766	1	0.86117	1
Del Peak 38(22q13.32)	483 (86%)	76	0.12472	1	0.062077	1	0.022884	1	0.071725	1	0.05921	1	0.10184	1	0.028823	1	0.35567	1	0.095619	1	0.027199	1	0.028633	1	0.50315	1
Del Peak 39(Xp21.1)	356 (64%)	203	0.296	1	0.98007	1	0.11993	1	0.64288	1	0.051017	1	0.012562	1	0.11901	1	0.034897	1	0.57726	1	0.80252	1	0.94278	1	0.22161	1
